Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599540 | XP_013455625.1 | 98.763 | 566 | 7 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599540 | sp|P45457|ACEA2_SOYBN | 88.730 | 559 | 61 | 1 | 8 | 566 | 1 | 557 | 0.0 | 1058 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599540 | A0A072UJP2 | 98.763 | 566 | 7 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1177 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543780 | Msa0599540 | 0.943931 | 4.922443e-103 | -8.615850e-47 |
| Msa0599540 | Msa0640230 | 0.926582 | 3.845947e-91 | -8.615850e-47 |
| Msa0599540 | Msa0679110 | 0.919957 | 2.347872e-87 | -8.615850e-47 |
| Msa0599540 | Msa1200420 | 0.844357 | 7.950420e-59 | -8.615850e-47 |
| Msa0599540 | Msa1253450 | 0.807479 | 4.953711e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599540 | MtrunA17_Chr4g0024191 | 98.763 | 566 | 7 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599540 | AT3G21720.1 | 77.562 | 566 | 126 | 1 | 1 | 566 | 12 | 576 | 0.0 | 954 |
Find 141 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCATCAGTTTATTT+TGG | 0.128571 | 4_2:-39335478 | Msa0599540:CDS |
| TCTCATCCTCGTTAACATTT+TGG | 0.176405 | 4_2:+39335292 | None:intergenic |
| TTTGTCGAACGCGGTGCTGC+TGG | 0.231397 | 4_2:-39335696 | Msa0599540:CDS |
| TGTTACTGAAGATCAATTTA+AGG | 0.237060 | 4_2:-39334364 | Msa0599540:CDS |
| TTTGTCTTAGGTTTCCTCTT+AGG | 0.247843 | 4_2:+39336129 | None:intergenic |
| ATGATCCCTTGTATCAATAT+TGG | 0.254265 | 4_2:+39335491 | None:intergenic |
| TAGGCGTGAGAAAACTCTTT+TGG | 0.264721 | 4_2:-39335182 | Msa0599540:CDS |
| CACCACACGCTGATCTTATC+TGG | 0.275848 | 4_2:-39335074 | Msa0599540:CDS |
| CTATCAATGCCCACTGTTCC+TGG | 0.282019 | 4_2:+39334327 | None:intergenic |
| TAAAACCCTTCTCTAGTTCT+AGG | 0.287639 | 4_2:+39335147 | None:intergenic |
| GGTCTCAAATAATCAATAAA+AGG | 0.302353 | 4_2:+39335783 | None:intergenic |
| TTGAGGCATAGGTTTGTCTT+AGG | 0.310375 | 4_2:+39336117 | None:intergenic |
| AAGGCTTCAATTTGATGTTA+TGG | 0.316260 | 4_2:-39335571 | Msa0599540:CDS |
| ATGGCACAAGGATTTGCTTC+TGG | 0.324415 | 4_2:-39335411 | Msa0599540:CDS |
| TGTATAGATCCTTCACATTC+TGG | 0.326097 | 4_2:+39334275 | None:intergenic |
| AAAAGATGTTCAACTTTGTT+CGG | 0.327767 | 4_2:+39335882 | None:intergenic |
| TCACATGGCCGGGAAAGTTT+TGG | 0.333776 | 4_2:-39335631 | Msa0599540:CDS |
| ATTCCTAAGATTGCTCAGTT+AGG | 0.340296 | 4_2:-39334901 | Msa0599540:CDS |
| TTGTCTTAGGTTTCCTCTTA+GGG | 0.348543 | 4_2:+39336130 | None:intergenic |
| AAAGATGTTCAACTTTGTTC+GGG | 0.357887 | 4_2:+39335883 | None:intergenic |
| AGGCTTCAATTTGATGTTAT+GGG | 0.358560 | 4_2:-39335570 | Msa0599540:CDS |
| GGCTACTTCGGACTCGAATC+TGG | 0.358775 | 4_2:+39336226 | None:intergenic |
| TTGCTAGGGATTTCGCTAAC+AGG | 0.361380 | 4_2:-39334816 | Msa0599540:CDS |
| TGCTGTTCTGTTGGCTTGGT+GGG | 0.371779 | 4_2:+39336058 | None:intergenic |
| AACATTCGGTGCACTTGATC+CGG | 0.382426 | 4_2:-39336030 | Msa0599540:CDS |
| AACCGCAACCAAAACTTTCC+CGG | 0.383568 | 4_2:+39335623 | None:intergenic |
| TACCCTAACTGAGCAATCTT+AGG | 0.384881 | 4_2:+39334898 | None:intergenic |
| TGTGTGCACTCAACCACATT+AGG | 0.387148 | 4_2:+39335036 | None:intergenic |
| GCCATTTGAGTGACTTGAAC+CGG | 0.391193 | 4_2:+39336011 | None:intergenic |
| CAGGGGAATGTTAGCTTATG+TGG | 0.394492 | 4_2:-39334797 | Msa0599540:CDS |
| AAAGAGTGGAGCTGAACTTC+AGG | 0.398181 | 4_2:-39335388 | Msa0599540:CDS |
| ATACACTTGCTCATCAGAAA+TGG | 0.399650 | 4_2:-39334738 | Msa0599540:CDS |
| TATGGGAGTTGAAACTGTTT+TGG | 0.403754 | 4_2:-39335553 | Msa0599540:CDS |
| TTGTCGAACGCGGTGCTGCT+GGG | 0.408084 | 4_2:-39335695 | Msa0599540:CDS |
| AAAGAGTTTGGCAACAGTTA+TGG | 0.409607 | 4_2:-39335430 | Msa0599540:CDS |
| TGCGCAGTTGAAAACTTTCT+CGG | 0.415239 | 4_2:-39335340 | Msa0599540:CDS |
| CGGTTAGTGAGCATATTAAT+CGG | 0.418541 | 4_2:-39335605 | Msa0599540:CDS |
| TTCCTAAGATTGCTCAGTTA+GGG | 0.418668 | 4_2:-39334900 | Msa0599540:CDS |
| CACTCAAATGGCAAAACACT+TGG | 0.421562 | 4_2:-39336000 | Msa0599540:CDS |
| GTGGGCATTGATAGAGATAA+TGG | 0.425327 | 4_2:-39334318 | Msa0599540:CDS |
| CGATAACTCATTTGAGGCAT+AGG | 0.439464 | 4_2:+39336106 | None:intergenic |
| AGGGAGATTTCTGAGAGATT+AGG | 0.440762 | 4_2:-39335201 | Msa0599540:CDS |
| TCGATGCTGTTCTGTTGGCT+TGG | 0.443029 | 4_2:+39336054 | None:intergenic |
| CGAGAAATGTCTTTCGATTG+AGG | 0.451441 | 4_2:-39335229 | Msa0599540:CDS |
| GAGTCTGAAGGGAAAGAGTT+TGG | 0.453937 | 4_2:-39335442 | Msa0599540:CDS |
| AGAAATGCGGTCACATGGCC+GGG | 0.459846 | 4_2:-39335641 | Msa0599540:CDS |
| TAATCACTTCAACATTTGCT+AGG | 0.466556 | 4_2:-39334831 | Msa0599540:CDS |
| TTGGACACTATTTACGTCTC+AGG | 0.466802 | 4_2:-39335981 | Msa0599540:CDS |
| AAGATCAGGACCAGGTTCAT+TGG | 0.467216 | 4_2:+39335929 | None:intergenic |
| GTGTCACCATCAGCTATAAT+CGG | 0.468614 | 4_2:+39335762 | None:intergenic |
| AGCTGAACTTCAGGCATTGG+AGG | 0.474914 | 4_2:-39335379 | Msa0599540:CDS |
| TGTTCTCGATGCTGTTCTGT+TGG | 0.475355 | 4_2:+39336049 | None:intergenic |
| AAGAAATGCGGTCACATGGC+CGG | 0.477163 | 4_2:-39335642 | Msa0599540:CDS |
| ATGCTGTTCTGTTGGCTTGG+TGG | 0.477703 | 4_2:+39336057 | None:intergenic |
| TGCTTGCACCTCGGCTACTT+CGG | 0.480788 | 4_2:+39336214 | None:intergenic |
| TCGGTACCTCAAAACTATCC+AGG | 0.481959 | 4_2:-39334695 | Msa0599540:CDS |
| AAAGACGTAGTTTCCCTAAG+AGG | 0.484308 | 4_2:-39336143 | Msa0599540:CDS |
| GTTACCGCTGCTGTTGTTCG+CGG | 0.494880 | 4_2:-39335108 | Msa0599540:CDS |
| TGGAGCTGAACTTCAGGCAT+TGG | 0.503758 | 4_2:-39335382 | Msa0599540:CDS |
| AAACTCTTTCCCTTCAGACT+CGG | 0.508721 | 4_2:+39335444 | None:intergenic |
| TACACTTGCTCATCAGAAAT+GGG | 0.513240 | 4_2:-39334737 | Msa0599540:CDS |
| TCAACCGCTGCAATGGGAAA+AGG | 0.513835 | 4_2:-39334661 | Msa0599540:intron |
| GTTGAAAACTTTCTCGGAAG+CGG | 0.514423 | 4_2:-39335334 | Msa0599540:CDS |
| TGGCAGCATGGTGGTTGCTA+AGG | 0.514689 | 4_2:-39334298 | Msa0599540:CDS |
| TAAGGATAATCAGCAAGATC+AGG | 0.515265 | 4_2:+39335915 | None:intergenic |
| GTCTTTCGATTGAGGAAGGT+AGG | 0.515406 | 4_2:-39335221 | Msa0599540:CDS |
| GCTGATGGTGACACTGGATT+CGG | 0.515523 | 4_2:-39335753 | Msa0599540:CDS |
| AGAACAGCATCGAGAACATT+CGG | 0.518231 | 4_2:-39336044 | Msa0599540:CDS |
| TGTTGCGTCAACCGCTGCAA+TGG | 0.518520 | 4_2:-39334668 | Msa0599540:CDS |
| TTCAATCCAATATTGATACA+AGG | 0.519422 | 4_2:-39335497 | Msa0599540:CDS |
| TCCGGTTCAAGTCACTCAAA+TGG | 0.523770 | 4_2:-39336012 | Msa0599540:CDS |
| TGCTAGGGATTTCGCTAACA+GGG | 0.526659 | 4_2:-39334815 | Msa0599540:CDS |
| AATCACTTCAACATTTGCTA+GGG | 0.528772 | 4_2:-39334830 | Msa0599540:CDS |
| TGGCAGTTCATAACTGTTGG+TGG | 0.532855 | 4_2:-39334871 | Msa0599540:CDS |
| AAAGGAGGAGGTTGAACGAG+TGG | 0.536117 | 4_2:-39335269 | Msa0599540:CDS |
| GTTGCGTCAACCGCTGCAAT+GGG | 0.541092 | 4_2:-39334667 | Msa0599540:CDS |
| AAGGAAACATGGACTAGGCC+AGG | 0.547173 | 4_2:-39334345 | Msa0599540:CDS |
| CACACAACTACCAATGAACC+TGG | 0.547976 | 4_2:-39335939 | Msa0599540:CDS |
| GAAGCATCCCAATTAAAAGA+TGG | 0.548954 | 4_2:+39334955 | None:intergenic |
| GGATTTGCTTCTGGAAAGAG+TGG | 0.553663 | 4_2:-39335402 | Msa0599540:CDS |
| GACTAAGAAATGCGGTCACA+TGG | 0.553775 | 4_2:-39335646 | Msa0599540:CDS |
| TTGAGACCGATTATAGCTGA+TGG | 0.561163 | 4_2:-39335768 | Msa0599540:CDS |
| ATTATAGCTGATGGTGACAC+TGG | 0.566898 | 4_2:-39335759 | Msa0599540:CDS |
| ATGTTAACGAGGATGAGAAA+AGG | 0.568265 | 4_2:-39335287 | Msa0599540:CDS |
| TGCTGCTGGGATTCACATTG+AGG | 0.568298 | 4_2:-39335682 | Msa0599540:CDS |
| TTGTTCGGGACAGTGTCGTA+AGG | 0.568513 | 4_2:+39335897 | None:intergenic |
| TCAATCCAATATTGATACAA+GGG | 0.570551 | 4_2:-39335496 | Msa0599540:CDS |
| ACGAGGATGAGAAAAGGAGG+AGG | 0.572283 | 4_2:-39335281 | Msa0599540:CDS |
| TTCATTGGTAGTTGTGTGTG+TGG | 0.576063 | 4_2:+39335944 | None:intergenic |
| AAGTATCCACAGATATTGCT+CGG | 0.578731 | 4_2:-39334991 | Msa0599540:CDS |
| AAATGTCTTTCGATTGAGGA+AGG | 0.585258 | 4_2:-39335225 | Msa0599540:CDS |
| CTTGCTCATCAGAAATGGGC+CGG | 0.586178 | 4_2:-39334733 | Msa0599540:CDS |
| GACTTGCCTAGAACTAGAGA+AGG | 0.586444 | 4_2:-39335153 | Msa0599540:CDS |
| GAATGTTAGCTTATGTGGAA+AGG | 0.590349 | 4_2:-39334792 | Msa0599540:CDS |
| AAGTAGCCGAGGTGCAAGCA+TGG | 0.591579 | 4_2:-39336211 | Msa0599540:CDS |
| TATGAGTGATATCGAAATGA+GGG | 0.592706 | 4_2:-39334929 | Msa0599540:CDS |
| ATGGACTAGGCCAGGAACAG+TGG | 0.593862 | 4_2:-39334337 | Msa0599540:CDS |
| CGTGACGAATCCGAGTCTGA+AGG | 0.594026 | 4_2:-39335454 | Msa0599540:CDS |
| TCTTTCGATTGAGGAAGGTA+GGG | 0.594046 | 4_2:-39335220 | Msa0599540:CDS |
| TTAACGAGGATGAGAAAAGG+AGG | 0.595598 | 4_2:-39335284 | Msa0599540:CDS |
| ACACGCTGATCTTATCTGGA+TGG | 0.596230 | 4_2:-39335070 | Msa0599540:CDS |
| CGGTACCTCAAAACTATCCA+GGG | 0.597608 | 4_2:-39334694 | Msa0599540:CDS |
| TTCAGGCATTGGAGGATCAG+TGG | 0.599344 | 4_2:-39335371 | Msa0599540:CDS |
| TTAATCGGCTTGTTGCTGCA+AGG | 0.599835 | 4_2:-39335590 | Msa0599540:CDS |
| ACACTATTTACGTCTCAGGT+TGG | 0.601758 | 4_2:-39335977 | Msa0599540:CDS |
| TGTGGAAAGGATTCAAAGAG+AGG | 0.604516 | 4_2:-39334779 | Msa0599540:CDS |
| GTGACGAATCCGAGTCTGAA+GGG | 0.606532 | 4_2:-39335453 | Msa0599540:CDS |
| GTATGAGTGATATCGAAATG+AGG | 0.607660 | 4_2:-39334930 | Msa0599540:CDS |
| GCGTTCTTGCTCGATCCTCT+CGG | 0.608934 | 4_2:+39335805 | None:intergenic |
| GTGTGGCAGTTCATAACTGT+TGG | 0.609872 | 4_2:-39334874 | Msa0599540:CDS |
| TTGGCAACAGTTATGGCACA+AGG | 0.611584 | 4_2:-39335423 | Msa0599540:CDS |
| CAAAGAGAGGAAAGGAACAA+TGG | 0.612502 | 4_2:-39334766 | Msa0599540:CDS |
| AAGATCAATTTAAGGAAACA+TGG | 0.613442 | 4_2:-39334356 | Msa0599540:CDS |
| AATTTAAGGAAACATGGACT+AGG | 0.614157 | 4_2:-39334350 | Msa0599540:CDS |
| CGGTTGACGCAACACCACCC+TGG | 0.615584 | 4_2:+39334677 | None:intergenic |
| TGGACTAGGCCAGGAACAGT+GGG | 0.628373 | 4_2:-39334336 | Msa0599540:CDS |
| GTGACCGCATTTCTTAGTCA+CGG | 0.630979 | 4_2:+39335650 | None:intergenic |
| TTGCTCAGTTAGGGTATGTG+TGG | 0.632689 | 4_2:-39334891 | Msa0599540:CDS |
| CAAGAGCCAAAATGTTAACG+AGG | 0.635217 | 4_2:-39335298 | Msa0599540:CDS |
| ACAGAAAGCAAAGAGAAGAG+AGG | 0.637146 | 4_2:-39335839 | Msa0599540:CDS |
| ACTTGCCTAGAACTAGAGAA+GGG | 0.637521 | 4_2:-39335152 | Msa0599540:CDS |
| AAAGGATTCAAAGAGAGGAA+AGG | 0.638459 | 4_2:-39334774 | Msa0599540:CDS |
| GGAAACAGCAAGTCCTAATG+TGG | 0.639029 | 4_2:-39335049 | Msa0599540:CDS |
| GCTAGGGATTTCGCTAACAG+GGG | 0.639333 | 4_2:-39334814 | Msa0599540:CDS |
| ATTCGAGTCCGAAGTAGCCG+AGG | 0.641135 | 4_2:-39336222 | Msa0599540:CDS |
| TGATAGAGATAATGGCAGCA+TGG | 0.645388 | 4_2:-39334310 | Msa0599540:CDS |
| CCGGTGCGAATTACTATGAT+CGG | 0.645865 | 4_2:-39334714 | Msa0599540:CDS |
| TTGCTAAGGCCAGAATGTGA+AGG | 0.649256 | 4_2:-39334284 | None:intergenic |
| TAATCAGCAAGATCAGGACC+AGG | 0.662714 | 4_2:+39335921 | None:intergenic |
| TAGCCGAGGTGCAAGCATGG+TGG | 0.664228 | 4_2:-39336208 | Msa0599540:CDS |
| TTGTATCCGAGCAATATCTG+TGG | 0.672590 | 4_2:+39334985 | None:intergenic |
| AAGCATGGTGGAACACTGAG+AGG | 0.675672 | 4_2:-39336196 | Msa0599540:CDS |
| GTTCCACCATGCTTGCACCT+CGG | 0.691495 | 4_2:+39336205 | None:intergenic |
| CCGATCATAGTAATTCGCAC+CGG | 0.697391 | 4_2:+39334714 | None:intergenic |
| GATGGTGACACTGGATTCGG+TGG | 0.700372 | 4_2:-39335750 | Msa0599540:CDS |
| GAGGATGAGTATGAGCCGAG+AGG | 0.718491 | 4_2:-39335820 | Msa0599540:CDS |
| ATCCAGATAAGATCAGCGTG+TGG | 0.728979 | 4_2:+39335072 | None:intergenic |
| TCTTCCGTGACTAAGAAATG+CGG | 0.729667 | 4_2:-39335654 | Msa0599540:CDS |
| ACAACCGCGAACAACAGCAG+CGG | 0.731208 | 4_2:+39335104 | None:intergenic |
| TACCTCAAAACTATCCAGGG+TGG | 0.741495 | 4_2:-39334691 | Msa0599540:CDS |
| TAGAGATAATGGCAGCATGG+TGG | 0.765792 | 4_2:-39334307 | Msa0599540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAATGTTACAATTA+AGG | - | chr4_2:39335897-39335916 | Msa0599540:CDS | 10.0% |
| !!! | AATTTTTTTGAAAAAAACAA+TGG | - | chr4_2:39336101-39336120 | Msa0599540:CDS | 10.0% |
| !!! | TTACGATTTTAATTTTTTAT+AGG | - | chr4_2:39336139-39336158 | Msa0599540:CDS | 10.0% |
| !! | ATAAATTAATGTTACAATTA+AGG | - | chr4_2:39335897-39335916 | Msa0599540:CDS | 10.0% |
| !!! | AATTTTTTTGAAAAAAACAA+TGG | - | chr4_2:39336101-39336120 | Msa0599540:CDS | 10.0% |
| !!! | TTACGATTTTAATTTTTTAT+AGG | - | chr4_2:39336139-39336158 | Msa0599540:CDS | 10.0% |
| !!! | GTTTTTTTCAAAAAAATTAG+CGG | + | chr4_2:39336099-39336118 | None:intergenic | 15.0% |
| !!! | GTTTTTTTCAAAAAAATTAG+CGG | + | chr4_2:39336099-39336118 | None:intergenic | 15.0% |
| ! | AAAAGATGTTCAACTTTGTT+CGG | + | chr4_2:39334647-39334666 | None:intergenic | 25.0% |
| ! | GGTCTCAAATAATCAATAAA+AGG | + | chr4_2:39334746-39334765 | None:intergenic | 25.0% |
| ! | TTCAATCCAATATTGATACA+AGG | - | chr4_2:39335029-39335048 | Msa0599540:CDS | 25.0% |
| ! | TCAATCCAATATTGATACAA+GGG | - | chr4_2:39335030-39335049 | Msa0599540:CDS | 25.0% |
| ! | TGTTACTGAAGATCAATTTA+AGG | - | chr4_2:39336162-39336181 | Msa0599540:CDS | 25.0% |
| ! | AAGATCAATTTAAGGAAACA+TGG | - | chr4_2:39336170-39336189 | Msa0599540:CDS | 25.0% |
| ! | AAAAGATGTTCAACTTTGTT+CGG | + | chr4_2:39334647-39334666 | None:intergenic | 25.0% |
| ! | GGTCTCAAATAATCAATAAA+AGG | + | chr4_2:39334746-39334765 | None:intergenic | 25.0% |
| ! | TTCAATCCAATATTGATACA+AGG | - | chr4_2:39335029-39335048 | Msa0599540:CDS | 25.0% |
| ! | TCAATCCAATATTGATACAA+GGG | - | chr4_2:39335030-39335049 | Msa0599540:CDS | 25.0% |
| ! | TGTTACTGAAGATCAATTTA+AGG | - | chr4_2:39336162-39336181 | Msa0599540:CDS | 25.0% |
| ! | AAGATCAATTTAAGGAAACA+TGG | - | chr4_2:39336170-39336189 | Msa0599540:CDS | 25.0% |
| !!! | CTTTTTCGATAACTCATTTG+AGG | + | chr4_2:39334429-39334448 | None:intergenic | 30.0% |
| AAAGATGTTCAACTTTGTTC+GGG | + | chr4_2:39334646-39334665 | None:intergenic | 30.0% | |
| AAGGCTTCAATTTGATGTTA+TGG | - | chr4_2:39334955-39334974 | Msa0599540:CDS | 30.0% | |
| AGGCTTCAATTTGATGTTAT+GGG | - | chr4_2:39334956-39334975 | Msa0599540:CDS | 30.0% | |
| ATGATCCCTTGTATCAATAT+TGG | + | chr4_2:39335038-39335057 | None:intergenic | 30.0% | |
| ! | AAGGGATCATCAGTTTATTT+TGG | - | chr4_2:39335048-39335067 | Msa0599540:CDS | 30.0% |
| !! | AGGGATCATCAGTTTATTTT+GGG | - | chr4_2:39335049-39335068 | Msa0599540:CDS | 30.0% |
| !! | GAAGGGTTTTATAGGTTTAA+AGG | - | chr4_2:39335391-39335410 | Msa0599540:CDS | 30.0% |
| ! | ATCTTTCGCCATCTTTTAAT+TGG | - | chr4_2:39335563-39335582 | Msa0599540:CDS | 30.0% |
| !! | TCTTTCGCCATCTTTTAATT+GGG | - | chr4_2:39335564-39335583 | Msa0599540:CDS | 30.0% |
| !! | ATCTTTTAATTGGGATGCTT+CGG | - | chr4_2:39335573-39335592 | Msa0599540:CDS | 30.0% |
| TATGAGTGATATCGAAATGA+GGG | - | chr4_2:39335597-39335616 | Msa0599540:CDS | 30.0% | |
| TAATCACTTCAACATTTGCT+AGG | - | chr4_2:39335695-39335714 | Msa0599540:CDS | 30.0% | |
| ! | AATCACTTCAACATTTGCTA+GGG | - | chr4_2:39335696-39335715 | Msa0599540:CDS | 30.0% |
| AGTGACTCTAAGTAATATCA+AGG | + | chr4_2:39335961-39335980 | None:intergenic | 30.0% | |
| CATCAAAAACCTTGATGTTA+CGG | - | chr4_2:39336028-39336047 | Msa0599540:CDS | 30.0% | |
| ATCAAAAACCTTGATGTTAC+GGG | - | chr4_2:39336029-39336048 | Msa0599540:CDS | 30.0% | |
| !! | ATAACGAGGGTTTTCTAAAA+AGG | + | chr4_2:39336075-39336094 | None:intergenic | 30.0% |
| AAAAATTAGCGGTATAACGA+GGG | + | chr4_2:39336088-39336107 | None:intergenic | 30.0% | |
| AAAAAATTAGCGGTATAACG+AGG | + | chr4_2:39336089-39336108 | None:intergenic | 30.0% | |
| AATTTAAGGAAACATGGACT+AGG | - | chr4_2:39336176-39336195 | Msa0599540:CDS | 30.0% | |
| !!! | CTTTTTCGATAACTCATTTG+AGG | + | chr4_2:39334429-39334448 | None:intergenic | 30.0% |
| AAAGATGTTCAACTTTGTTC+GGG | + | chr4_2:39334646-39334665 | None:intergenic | 30.0% | |
| AAGGCTTCAATTTGATGTTA+TGG | - | chr4_2:39334955-39334974 | Msa0599540:CDS | 30.0% | |
| AGGCTTCAATTTGATGTTAT+GGG | - | chr4_2:39334956-39334975 | Msa0599540:CDS | 30.0% | |
| ATGATCCCTTGTATCAATAT+TGG | + | chr4_2:39335038-39335057 | None:intergenic | 30.0% | |
| ! | AAGGGATCATCAGTTTATTT+TGG | - | chr4_2:39335048-39335067 | Msa0599540:CDS | 30.0% |
| !! | AGGGATCATCAGTTTATTTT+GGG | - | chr4_2:39335049-39335068 | Msa0599540:CDS | 30.0% |
| !! | GAAGGGTTTTATAGGTTTAA+AGG | - | chr4_2:39335391-39335410 | Msa0599540:CDS | 30.0% |
| ! | ATCTTTCGCCATCTTTTAAT+TGG | - | chr4_2:39335563-39335582 | Msa0599540:CDS | 30.0% |
| !! | TCTTTCGCCATCTTTTAATT+GGG | - | chr4_2:39335564-39335583 | Msa0599540:CDS | 30.0% |
| !! | ATCTTTTAATTGGGATGCTT+CGG | - | chr4_2:39335573-39335592 | Msa0599540:CDS | 30.0% |
| TATGAGTGATATCGAAATGA+GGG | - | chr4_2:39335597-39335616 | Msa0599540:CDS | 30.0% | |
| TAATCACTTCAACATTTGCT+AGG | - | chr4_2:39335695-39335714 | Msa0599540:CDS | 30.0% | |
| ! | AATCACTTCAACATTTGCTA+GGG | - | chr4_2:39335696-39335715 | Msa0599540:CDS | 30.0% |
| AGTGACTCTAAGTAATATCA+AGG | + | chr4_2:39335961-39335980 | None:intergenic | 30.0% | |
| CATCAAAAACCTTGATGTTA+CGG | - | chr4_2:39336028-39336047 | Msa0599540:CDS | 30.0% | |
| ATCAAAAACCTTGATGTTAC+GGG | - | chr4_2:39336029-39336048 | Msa0599540:CDS | 30.0% | |
| !! | ATAACGAGGGTTTTCTAAAA+AGG | + | chr4_2:39336075-39336094 | None:intergenic | 30.0% |
| AAAAATTAGCGGTATAACGA+GGG | + | chr4_2:39336088-39336107 | None:intergenic | 30.0% | |
| AAAAAATTAGCGGTATAACG+AGG | + | chr4_2:39336089-39336108 | None:intergenic | 30.0% | |
| AATTTAAGGAAACATGGACT+AGG | - | chr4_2:39336176-39336195 | Msa0599540:CDS | 30.0% | |
| ! | TTTTGCTGAGTATGGTCTTT+GGG | + | chr4_2:39334366-39334385 | None:intergenic | 35.0% |
| TTGTCTTAGGTTTCCTCTTA+GGG | + | chr4_2:39334399-39334418 | None:intergenic | 35.0% | |
| TTTGTCTTAGGTTTCCTCTT+AGG | + | chr4_2:39334400-39334419 | None:intergenic | 35.0% | |
| ATGAGTTATCGAAAAAGCTC+TGG | - | chr4_2:39334432-39334451 | Msa0599540:intron | 35.0% | |
| TAAGGATAATCAGCAAGATC+AGG | + | chr4_2:39334614-39334633 | None:intergenic | 35.0% | |
| CGGTTAGTGAGCATATTAAT+CGG | - | chr4_2:39334921-39334940 | Msa0599540:CDS | 35.0% | |
| ! | TATGGGAGTTGAAACTGTTT+TGG | - | chr4_2:39334973-39334992 | Msa0599540:CDS | 35.0% |
| AAAGAGTTTGGCAACAGTTA+TGG | - | chr4_2:39335096-39335115 | Msa0599540:CDS | 35.0% | |
| ! | TCTCATCCTCGTTAACATTT+TGG | + | chr4_2:39335237-39335256 | None:intergenic | 35.0% |
| ATGTTAACGAGGATGAGAAA+AGG | - | chr4_2:39335239-39335258 | Msa0599540:CDS | 35.0% | |
| AAATGTCTTTCGATTGAGGA+AGG | - | chr4_2:39335301-39335320 | Msa0599540:CDS | 35.0% | |
| !!! | TGAGAAAACTCTTTTGGGAT+TGG | - | chr4_2:39335350-39335369 | Msa0599540:CDS | 35.0% |
| !!! | GAGAAAACTCTTTTGGGATT+GGG | - | chr4_2:39335351-39335370 | Msa0599540:CDS | 35.0% |
| !! | TAAAACCCTTCTCTAGTTCT+AGG | + | chr4_2:39335382-39335401 | None:intergenic | 35.0% |
| !! | GAACTAGAGAAGGGTTTTAT+AGG | - | chr4_2:39335383-39335402 | Msa0599540:CDS | 35.0% |
| AAGTATCCACAGATATTGCT+CGG | - | chr4_2:39335535-39335554 | Msa0599540:CDS | 35.0% | |
| ! | GAAGCATCCCAATTAAAAGA+TGG | + | chr4_2:39335574-39335593 | None:intergenic | 35.0% |
| !! | TCTTTTAATTGGGATGCTTC+GGG | - | chr4_2:39335574-39335593 | Msa0599540:CDS | 35.0% |
| GTATGAGTGATATCGAAATG+AGG | - | chr4_2:39335596-39335615 | Msa0599540:CDS | 35.0% | |
| ATTCCTAAGATTGCTCAGTT+AGG | - | chr4_2:39335625-39335644 | Msa0599540:CDS | 35.0% | |
| TTCCTAAGATTGCTCAGTTA+GGG | - | chr4_2:39335626-39335645 | Msa0599540:CDS | 35.0% | |
| ! | GAATGTTAGCTTATGTGGAA+AGG | - | chr4_2:39335734-39335753 | Msa0599540:CDS | 35.0% |
| AAAGGATTCAAAGAGAGGAA+AGG | - | chr4_2:39335752-39335771 | Msa0599540:CDS | 35.0% | |
| ATACACTTGCTCATCAGAAA+TGG | - | chr4_2:39335788-39335807 | Msa0599540:CDS | 35.0% | |
| TACACTTGCTCATCAGAAAT+GGG | - | chr4_2:39335789-39335808 | Msa0599540:CDS | 35.0% | |
| CTTAGAGTCACTATCAAATG+TGG | - | chr4_2:39335969-39335988 | Msa0599540:CDS | 35.0% | |
| AAATGTGGCTAACGTCAATT+TGG | - | chr4_2:39335984-39336003 | Msa0599540:CDS | 35.0% | |
| AATGTGGCTAACGTCAATTT+GGG | - | chr4_2:39335985-39336004 | Msa0599540:CDS | 35.0% | |
| ! | TTTTGCTGAGTATGGTCTTT+GGG | + | chr4_2:39334366-39334385 | None:intergenic | 35.0% |
| TTGTCTTAGGTTTCCTCTTA+GGG | + | chr4_2:39334399-39334418 | None:intergenic | 35.0% | |
| TTTGTCTTAGGTTTCCTCTT+AGG | + | chr4_2:39334400-39334419 | None:intergenic | 35.0% | |
| ATGAGTTATCGAAAAAGCTC+TGG | - | chr4_2:39334432-39334451 | Msa0599540:intron | 35.0% | |
| TAAGGATAATCAGCAAGATC+AGG | + | chr4_2:39334614-39334633 | None:intergenic | 35.0% | |
| CGGTTAGTGAGCATATTAAT+CGG | - | chr4_2:39334921-39334940 | Msa0599540:CDS | 35.0% | |
| ! | TATGGGAGTTGAAACTGTTT+TGG | - | chr4_2:39334973-39334992 | Msa0599540:CDS | 35.0% |
| AAAGAGTTTGGCAACAGTTA+TGG | - | chr4_2:39335096-39335115 | Msa0599540:CDS | 35.0% | |
| ! | TCTCATCCTCGTTAACATTT+TGG | + | chr4_2:39335237-39335256 | None:intergenic | 35.0% |
| ATGTTAACGAGGATGAGAAA+AGG | - | chr4_2:39335239-39335258 | Msa0599540:CDS | 35.0% | |
| AAATGTCTTTCGATTGAGGA+AGG | - | chr4_2:39335301-39335320 | Msa0599540:CDS | 35.0% | |
| !!! | TGAGAAAACTCTTTTGGGAT+TGG | - | chr4_2:39335350-39335369 | Msa0599540:CDS | 35.0% |
| !!! | GAGAAAACTCTTTTGGGATT+GGG | - | chr4_2:39335351-39335370 | Msa0599540:CDS | 35.0% |
| !! | TAAAACCCTTCTCTAGTTCT+AGG | + | chr4_2:39335382-39335401 | None:intergenic | 35.0% |
| !! | GAACTAGAGAAGGGTTTTAT+AGG | - | chr4_2:39335383-39335402 | Msa0599540:CDS | 35.0% |
| AAGTATCCACAGATATTGCT+CGG | - | chr4_2:39335535-39335554 | Msa0599540:CDS | 35.0% | |
| ! | GAAGCATCCCAATTAAAAGA+TGG | + | chr4_2:39335574-39335593 | None:intergenic | 35.0% |
| !! | TCTTTTAATTGGGATGCTTC+GGG | - | chr4_2:39335574-39335593 | Msa0599540:CDS | 35.0% |
| GTATGAGTGATATCGAAATG+AGG | - | chr4_2:39335596-39335615 | Msa0599540:CDS | 35.0% | |
| ATTCCTAAGATTGCTCAGTT+AGG | - | chr4_2:39335625-39335644 | Msa0599540:CDS | 35.0% | |
| TTCCTAAGATTGCTCAGTTA+GGG | - | chr4_2:39335626-39335645 | Msa0599540:CDS | 35.0% | |
| ! | GAATGTTAGCTTATGTGGAA+AGG | - | chr4_2:39335734-39335753 | Msa0599540:CDS | 35.0% |
| AAAGGATTCAAAGAGAGGAA+AGG | - | chr4_2:39335752-39335771 | Msa0599540:CDS | 35.0% | |
| ATACACTTGCTCATCAGAAA+TGG | - | chr4_2:39335788-39335807 | Msa0599540:CDS | 35.0% | |
| TACACTTGCTCATCAGAAAT+GGG | - | chr4_2:39335789-39335808 | Msa0599540:CDS | 35.0% | |
| CTTAGAGTCACTATCAAATG+TGG | - | chr4_2:39335969-39335988 | Msa0599540:CDS | 35.0% | |
| AAATGTGGCTAACGTCAATT+TGG | - | chr4_2:39335984-39336003 | Msa0599540:CDS | 35.0% | |
| AATGTGGCTAACGTCAATTT+GGG | - | chr4_2:39335985-39336004 | Msa0599540:CDS | 35.0% | |
| ! | CTTTTGCTGAGTATGGTCTT+TGG | + | chr4_2:39334367-39334386 | None:intergenic | 40.0% |
| ! | ACTACGTCTTTTGCTGAGTA+TGG | + | chr4_2:39334374-39334393 | None:intergenic | 40.0% |
| AAAGACGTAGTTTCCCTAAG+AGG | - | chr4_2:39334383-39334402 | Msa0599540:intron | 40.0% | |
| TTGAGGCATAGGTTTGTCTT+AGG | + | chr4_2:39334412-39334431 | None:intergenic | 40.0% | |
| ! | CGATAACTCATTTGAGGCAT+AGG | + | chr4_2:39334423-39334442 | None:intergenic | 40.0% |
| ! | AGAACAGCATCGAGAACATT+CGG | - | chr4_2:39334482-39334501 | Msa0599540:intron | 40.0% |
| CACTCAAATGGCAAAACACT+TGG | - | chr4_2:39334526-39334545 | Msa0599540:intron | 40.0% | |
| TTGGACACTATTTACGTCTC+AGG | - | chr4_2:39334545-39334564 | Msa0599540:intron | 40.0% | |
| ACACTATTTACGTCTCAGGT+TGG | - | chr4_2:39334549-39334568 | Msa0599540:intron | 40.0% | |
| ! | TTCATTGGTAGTTGTGTGTG+TGG | + | chr4_2:39334585-39334604 | None:intergenic | 40.0% |
| ACAGAAAGCAAAGAGAAGAG+AGG | - | chr4_2:39334687-39334706 | Msa0599540:CDS | 40.0% | |
| TTGAGACCGATTATAGCTGA+TGG | - | chr4_2:39334758-39334777 | Msa0599540:CDS | 40.0% | |
| GTGTCACCATCAGCTATAAT+CGG | + | chr4_2:39334767-39334786 | None:intergenic | 40.0% | |
| ! | ATTATAGCTGATGGTGACAC+TGG | - | chr4_2:39334767-39334786 | Msa0599540:CDS | 40.0% |
| ! | TGTAAGCTTTTTGTCGAACG+CGG | - | chr4_2:39334821-39334840 | Msa0599540:CDS | 40.0% |
| TCTTCCGTGACTAAGAAATG+CGG | - | chr4_2:39334872-39334891 | Msa0599540:CDS | 40.0% | |
| AAACTCTTTCCCTTCAGACT+CGG | + | chr4_2:39335085-39335104 | None:intergenic | 40.0% | |
| TGCGCAGTTGAAAACTTTCT+CGG | - | chr4_2:39335186-39335205 | Msa0599540:CDS | 40.0% | |
| GTTGAAAACTTTCTCGGAAG+CGG | - | chr4_2:39335192-39335211 | Msa0599540:CDS | 40.0% | |
| CAAGAGCCAAAATGTTAACG+AGG | - | chr4_2:39335228-39335247 | Msa0599540:CDS | 40.0% | |
| TTAACGAGGATGAGAAAAGG+AGG | - | chr4_2:39335242-39335261 | Msa0599540:CDS | 40.0% | |
| CGAGAAATGTCTTTCGATTG+AGG | - | chr4_2:39335297-39335316 | Msa0599540:CDS | 40.0% | |
| TCTTTCGATTGAGGAAGGTA+GGG | - | chr4_2:39335306-39335325 | Msa0599540:CDS | 40.0% | |
| ! | AGGGAGATTTCTGAGAGATT+AGG | - | chr4_2:39335325-39335344 | Msa0599540:CDS | 40.0% |
| ! | TAGGCGTGAGAAAACTCTTT+TGG | - | chr4_2:39335344-39335363 | Msa0599540:CDS | 40.0% |
| ! | AGGCGTGAGAAAACTCTTTT+GGG | - | chr4_2:39335345-39335364 | Msa0599540:CDS | 40.0% |
| ACTTGCCTAGAACTAGAGAA+GGG | - | chr4_2:39335374-39335393 | Msa0599540:CDS | 40.0% | |
| TTGTATCCGAGCAATATCTG+TGG | + | chr4_2:39335544-39335563 | None:intergenic | 40.0% | |
| TACCCTAACTGAGCAATCTT+AGG | + | chr4_2:39335631-39335650 | None:intergenic | 40.0% | |
| TGTGGAAAGGATTCAAAGAG+AGG | - | chr4_2:39335747-39335766 | Msa0599540:CDS | 40.0% | |
| CAAAGAGAGGAAAGGAACAA+TGG | - | chr4_2:39335760-39335779 | Msa0599540:CDS | 40.0% | |
| ! | CGTCAATTTGGGATCAATAG+TGG | - | chr4_2:39335996-39336015 | Msa0599540:CDS | 40.0% |
| !! | GTGGGCATTGATAGAGATAA+TGG | - | chr4_2:39336208-39336227 | Msa0599540:CDS | 40.0% |
| ! | TGATAGAGATAATGGCAGCA+TGG | - | chr4_2:39336216-39336235 | Msa0599540:CDS | 40.0% |
| ! | CTTTTGCTGAGTATGGTCTT+TGG | + | chr4_2:39334367-39334386 | None:intergenic | 40.0% |
| ! | ACTACGTCTTTTGCTGAGTA+TGG | + | chr4_2:39334374-39334393 | None:intergenic | 40.0% |
| AAAGACGTAGTTTCCCTAAG+AGG | - | chr4_2:39334383-39334402 | Msa0599540:intron | 40.0% | |
| TTGAGGCATAGGTTTGTCTT+AGG | + | chr4_2:39334412-39334431 | None:intergenic | 40.0% | |
| ! | CGATAACTCATTTGAGGCAT+AGG | + | chr4_2:39334423-39334442 | None:intergenic | 40.0% |
| ! | AGAACAGCATCGAGAACATT+CGG | - | chr4_2:39334482-39334501 | Msa0599540:intron | 40.0% |
| CACTCAAATGGCAAAACACT+TGG | - | chr4_2:39334526-39334545 | Msa0599540:intron | 40.0% | |
| TTGGACACTATTTACGTCTC+AGG | - | chr4_2:39334545-39334564 | Msa0599540:intron | 40.0% | |
| ACACTATTTACGTCTCAGGT+TGG | - | chr4_2:39334549-39334568 | Msa0599540:intron | 40.0% | |
| ! | TTCATTGGTAGTTGTGTGTG+TGG | + | chr4_2:39334585-39334604 | None:intergenic | 40.0% |
| ACAGAAAGCAAAGAGAAGAG+AGG | - | chr4_2:39334687-39334706 | Msa0599540:CDS | 40.0% | |
| TTGAGACCGATTATAGCTGA+TGG | - | chr4_2:39334758-39334777 | Msa0599540:CDS | 40.0% | |
| GTGTCACCATCAGCTATAAT+CGG | + | chr4_2:39334767-39334786 | None:intergenic | 40.0% | |
| ! | ATTATAGCTGATGGTGACAC+TGG | - | chr4_2:39334767-39334786 | Msa0599540:CDS | 40.0% |
| ! | TGTAAGCTTTTTGTCGAACG+CGG | - | chr4_2:39334821-39334840 | Msa0599540:CDS | 40.0% |
| TCTTCCGTGACTAAGAAATG+CGG | - | chr4_2:39334872-39334891 | Msa0599540:CDS | 40.0% | |
| AAACTCTTTCCCTTCAGACT+CGG | + | chr4_2:39335085-39335104 | None:intergenic | 40.0% | |
| TGCGCAGTTGAAAACTTTCT+CGG | - | chr4_2:39335186-39335205 | Msa0599540:CDS | 40.0% | |
| GTTGAAAACTTTCTCGGAAG+CGG | - | chr4_2:39335192-39335211 | Msa0599540:CDS | 40.0% | |
| CAAGAGCCAAAATGTTAACG+AGG | - | chr4_2:39335228-39335247 | Msa0599540:CDS | 40.0% | |
| TTAACGAGGATGAGAAAAGG+AGG | - | chr4_2:39335242-39335261 | Msa0599540:CDS | 40.0% | |
| CGAGAAATGTCTTTCGATTG+AGG | - | chr4_2:39335297-39335316 | Msa0599540:CDS | 40.0% | |
| TCTTTCGATTGAGGAAGGTA+GGG | - | chr4_2:39335306-39335325 | Msa0599540:CDS | 40.0% | |
| ! | AGGGAGATTTCTGAGAGATT+AGG | - | chr4_2:39335325-39335344 | Msa0599540:CDS | 40.0% |
| ! | TAGGCGTGAGAAAACTCTTT+TGG | - | chr4_2:39335344-39335363 | Msa0599540:CDS | 40.0% |
| ! | AGGCGTGAGAAAACTCTTTT+GGG | - | chr4_2:39335345-39335364 | Msa0599540:CDS | 40.0% |
| ACTTGCCTAGAACTAGAGAA+GGG | - | chr4_2:39335374-39335393 | Msa0599540:CDS | 40.0% | |
| TTGTATCCGAGCAATATCTG+TGG | + | chr4_2:39335544-39335563 | None:intergenic | 40.0% | |
| TACCCTAACTGAGCAATCTT+AGG | + | chr4_2:39335631-39335650 | None:intergenic | 40.0% | |
| TGTGGAAAGGATTCAAAGAG+AGG | - | chr4_2:39335747-39335766 | Msa0599540:CDS | 40.0% | |
| CAAAGAGAGGAAAGGAACAA+TGG | - | chr4_2:39335760-39335779 | Msa0599540:CDS | 40.0% | |
| ! | CGTCAATTTGGGATCAATAG+TGG | - | chr4_2:39335996-39336015 | Msa0599540:CDS | 40.0% |
| !! | GTGGGCATTGATAGAGATAA+TGG | - | chr4_2:39336208-39336227 | Msa0599540:CDS | 40.0% |
| ! | TGATAGAGATAATGGCAGCA+TGG | - | chr4_2:39336216-39336235 | Msa0599540:CDS | 40.0% |
| TGTTCTCGATGCTGTTCTGT+TGG | + | chr4_2:39334480-39334499 | None:intergenic | 45.0% | |
| !! | AACATTCGGTGCACTTGATC+CGG | - | chr4_2:39334496-39334515 | Msa0599540:intron | 45.0% |
| TCCGGTTCAAGTCACTCAAA+TGG | - | chr4_2:39334514-39334533 | Msa0599540:intron | 45.0% | |
| GCCATTTGAGTGACTTGAAC+CGG | + | chr4_2:39334518-39334537 | None:intergenic | 45.0% | |
| CACACAACTACCAATGAACC+TGG | - | chr4_2:39334587-39334606 | Msa0599540:intron | 45.0% | |
| AAGATCAGGACCAGGTTCAT+TGG | + | chr4_2:39334600-39334619 | None:intergenic | 45.0% | |
| TAATCAGCAAGATCAGGACC+AGG | + | chr4_2:39334608-39334627 | None:intergenic | 45.0% | |
| GTGACCGCATTTCTTAGTCA+CGG | + | chr4_2:39334879-39334898 | None:intergenic | 45.0% | |
| GACTAAGAAATGCGGTCACA+TGG | - | chr4_2:39334880-39334899 | Msa0599540:CDS | 45.0% | |
| AACCGCAACCAAAACTTTCC+CGG | + | chr4_2:39334906-39334925 | None:intergenic | 45.0% | |
| !! | TTAATCGGCTTGTTGCTGCA+AGG | - | chr4_2:39334936-39334955 | Msa0599540:CDS | 45.0% |
| GAGTCTGAAGGGAAAGAGTT+TGG | - | chr4_2:39335084-39335103 | Msa0599540:CDS | 45.0% | |
| TTGGCAACAGTTATGGCACA+AGG | - | chr4_2:39335103-39335122 | Msa0599540:CDS | 45.0% | |
| ! | ATGGCACAAGGATTTGCTTC+TGG | - | chr4_2:39335115-39335134 | Msa0599540:CDS | 45.0% |
| ! | GGATTTGCTTCTGGAAAGAG+TGG | - | chr4_2:39335124-39335143 | Msa0599540:CDS | 45.0% |
| AAAGAGTGGAGCTGAACTTC+AGG | - | chr4_2:39335138-39335157 | Msa0599540:CDS | 45.0% | |
| GTCTTTCGATTGAGGAAGGT+AGG | - | chr4_2:39335305-39335324 | Msa0599540:CDS | 45.0% | |
| GACTTGCCTAGAACTAGAGA+AGG | - | chr4_2:39335373-39335392 | Msa0599540:CDS | 45.0% | |
| ATCCAGATAAGATCAGCGTG+TGG | + | chr4_2:39335457-39335476 | None:intergenic | 45.0% | |
| ACACGCTGATCTTATCTGGA+TGG | - | chr4_2:39335456-39335475 | Msa0599540:CDS | 45.0% | |
| GGAAACAGCAAGTCCTAATG+TGG | - | chr4_2:39335477-39335496 | Msa0599540:CDS | 45.0% | |
| TGTGTGCACTCAACCACATT+AGG | + | chr4_2:39335493-39335512 | None:intergenic | 45.0% | |
| TTGCTCAGTTAGGGTATGTG+TGG | - | chr4_2:39335635-39335654 | Msa0599540:CDS | 45.0% | |
| GTGTGGCAGTTCATAACTGT+TGG | - | chr4_2:39335652-39335671 | Msa0599540:CDS | 45.0% | |
| TGGCAGTTCATAACTGTTGG+TGG | - | chr4_2:39335655-39335674 | Msa0599540:CDS | 45.0% | |
| TTGCTAGGGATTTCGCTAAC+AGG | - | chr4_2:39335710-39335729 | Msa0599540:CDS | 45.0% | |
| TGCTAGGGATTTCGCTAACA+GGG | - | chr4_2:39335711-39335730 | Msa0599540:CDS | 45.0% | |
| ! | CAGGGGAATGTTAGCTTATG+TGG | - | chr4_2:39335729-39335748 | Msa0599540:CDS | 45.0% |
| CCGATCATAGTAATTCGCAC+CGG | + | chr4_2:39335815-39335834 | None:intergenic | 45.0% | |
| CCGGTGCGAATTACTATGAT+CGG | - | chr4_2:39335812-39335831 | Msa0599540:CDS | 45.0% | |
| TCGGTACCTCAAAACTATCC+AGG | - | chr4_2:39335831-39335850 | Msa0599540:CDS | 45.0% | |
| CGGTACCTCAAAACTATCCA+GGG | - | chr4_2:39335832-39335851 | Msa0599540:CDS | 45.0% | |
| TACCTCAAAACTATCCAGGG+TGG | - | chr4_2:39335835-39335854 | Msa0599540:CDS | 45.0% | |
| ! | CTTACCTTTTCCCATTGCAG+CGG | + | chr4_2:39335872-39335891 | None:intergenic | 45.0% |
| AGATCTGACCCGTAACATCA+AGG | + | chr4_2:39336040-39336059 | None:intergenic | 45.0% | |
| ! | TAGAGATAATGGCAGCATGG+TGG | - | chr4_2:39336219-39336238 | Msa0599540:CDS | 45.0% |
| TGTTCTCGATGCTGTTCTGT+TGG | + | chr4_2:39334480-39334499 | None:intergenic | 45.0% | |
| !! | AACATTCGGTGCACTTGATC+CGG | - | chr4_2:39334496-39334515 | Msa0599540:intron | 45.0% |
| TCCGGTTCAAGTCACTCAAA+TGG | - | chr4_2:39334514-39334533 | Msa0599540:intron | 45.0% | |
| GCCATTTGAGTGACTTGAAC+CGG | + | chr4_2:39334518-39334537 | None:intergenic | 45.0% | |
| CACACAACTACCAATGAACC+TGG | - | chr4_2:39334587-39334606 | Msa0599540:intron | 45.0% | |
| AAGATCAGGACCAGGTTCAT+TGG | + | chr4_2:39334600-39334619 | None:intergenic | 45.0% | |
| TAATCAGCAAGATCAGGACC+AGG | + | chr4_2:39334608-39334627 | None:intergenic | 45.0% | |
| GTGACCGCATTTCTTAGTCA+CGG | + | chr4_2:39334879-39334898 | None:intergenic | 45.0% | |
| GACTAAGAAATGCGGTCACA+TGG | - | chr4_2:39334880-39334899 | Msa0599540:CDS | 45.0% | |
| AACCGCAACCAAAACTTTCC+CGG | + | chr4_2:39334906-39334925 | None:intergenic | 45.0% | |
| !! | TTAATCGGCTTGTTGCTGCA+AGG | - | chr4_2:39334936-39334955 | Msa0599540:CDS | 45.0% |
| GAGTCTGAAGGGAAAGAGTT+TGG | - | chr4_2:39335084-39335103 | Msa0599540:CDS | 45.0% | |
| TTGGCAACAGTTATGGCACA+AGG | - | chr4_2:39335103-39335122 | Msa0599540:CDS | 45.0% | |
| ! | ATGGCACAAGGATTTGCTTC+TGG | - | chr4_2:39335115-39335134 | Msa0599540:CDS | 45.0% |
| ! | GGATTTGCTTCTGGAAAGAG+TGG | - | chr4_2:39335124-39335143 | Msa0599540:CDS | 45.0% |
| AAAGAGTGGAGCTGAACTTC+AGG | - | chr4_2:39335138-39335157 | Msa0599540:CDS | 45.0% | |
| GTCTTTCGATTGAGGAAGGT+AGG | - | chr4_2:39335305-39335324 | Msa0599540:CDS | 45.0% | |
| GACTTGCCTAGAACTAGAGA+AGG | - | chr4_2:39335373-39335392 | Msa0599540:CDS | 45.0% | |
| ATCCAGATAAGATCAGCGTG+TGG | + | chr4_2:39335457-39335476 | None:intergenic | 45.0% | |
| ACACGCTGATCTTATCTGGA+TGG | - | chr4_2:39335456-39335475 | Msa0599540:CDS | 45.0% | |
| GGAAACAGCAAGTCCTAATG+TGG | - | chr4_2:39335477-39335496 | Msa0599540:CDS | 45.0% | |
| TGTGTGCACTCAACCACATT+AGG | + | chr4_2:39335493-39335512 | None:intergenic | 45.0% | |
| TTGCTCAGTTAGGGTATGTG+TGG | - | chr4_2:39335635-39335654 | Msa0599540:CDS | 45.0% | |
| GTGTGGCAGTTCATAACTGT+TGG | - | chr4_2:39335652-39335671 | Msa0599540:CDS | 45.0% | |
| TGGCAGTTCATAACTGTTGG+TGG | - | chr4_2:39335655-39335674 | Msa0599540:CDS | 45.0% | |
| TTGCTAGGGATTTCGCTAAC+AGG | - | chr4_2:39335710-39335729 | Msa0599540:CDS | 45.0% | |
| TGCTAGGGATTTCGCTAACA+GGG | - | chr4_2:39335711-39335730 | Msa0599540:CDS | 45.0% | |
| ! | CAGGGGAATGTTAGCTTATG+TGG | - | chr4_2:39335729-39335748 | Msa0599540:CDS | 45.0% |
| CCGATCATAGTAATTCGCAC+CGG | + | chr4_2:39335815-39335834 | None:intergenic | 45.0% | |
| CCGGTGCGAATTACTATGAT+CGG | - | chr4_2:39335812-39335831 | Msa0599540:CDS | 45.0% | |
| TCGGTACCTCAAAACTATCC+AGG | - | chr4_2:39335831-39335850 | Msa0599540:CDS | 45.0% | |
| CGGTACCTCAAAACTATCCA+GGG | - | chr4_2:39335832-39335851 | Msa0599540:CDS | 45.0% | |
| TACCTCAAAACTATCCAGGG+TGG | - | chr4_2:39335835-39335854 | Msa0599540:CDS | 45.0% | |
| ! | CTTACCTTTTCCCATTGCAG+CGG | + | chr4_2:39335872-39335891 | None:intergenic | 45.0% |
| AGATCTGACCCGTAACATCA+AGG | + | chr4_2:39336040-39336059 | None:intergenic | 45.0% | |
| ! | TAGAGATAATGGCAGCATGG+TGG | - | chr4_2:39336219-39336238 | Msa0599540:CDS | 45.0% |
| ! | AAGCATGGTGGAACACTGAG+AGG | - | chr4_2:39334330-39334349 | Msa0599540:CDS | 50.0% |
| !! | TGCTGTTCTGTTGGCTTGGT+GGG | + | chr4_2:39334471-39334490 | None:intergenic | 50.0% |
| !! | ATGCTGTTCTGTTGGCTTGG+TGG | + | chr4_2:39334472-39334491 | None:intergenic | 50.0% |
| ! | TCGATGCTGTTCTGTTGGCT+TGG | + | chr4_2:39334475-39334494 | None:intergenic | 50.0% |
| TTGTTCGGGACAGTGTCGTA+AGG | + | chr4_2:39334632-39334651 | None:intergenic | 50.0% | |
| ! | GCTGATGGTGACACTGGATT+CGG | - | chr4_2:39334773-39334792 | Msa0599540:CDS | 50.0% |
| TGCTGCTGGGATTCACATTG+AGG | - | chr4_2:39334844-39334863 | Msa0599540:CDS | 50.0% | |
| AAGAAATGCGGTCACATGGC+CGG | - | chr4_2:39334884-39334903 | Msa0599540:CDS | 50.0% | |
| ! | TCACATGGCCGGGAAAGTTT+TGG | - | chr4_2:39334895-39334914 | Msa0599540:CDS | 50.0% |
| GTGACGAATCCGAGTCTGAA+GGG | - | chr4_2:39335073-39335092 | Msa0599540:CDS | 50.0% | |
| TGGAGCTGAACTTCAGGCAT+TGG | - | chr4_2:39335144-39335163 | Msa0599540:CDS | 50.0% | |
| !! | AGCTGAACTTCAGGCATTGG+AGG | - | chr4_2:39335147-39335166 | Msa0599540:CDS | 50.0% |
| !! | TTCAGGCATTGGAGGATCAG+TGG | - | chr4_2:39335155-39335174 | Msa0599540:CDS | 50.0% |
| ACGAGGATGAGAAAAGGAGG+AGG | - | chr4_2:39335245-39335264 | Msa0599540:CDS | 50.0% | |
| AAAGGAGGAGGTTGAACGAG+TGG | - | chr4_2:39335257-39335276 | Msa0599540:CDS | 50.0% | |
| CACCACACGCTGATCTTATC+TGG | - | chr4_2:39335452-39335471 | Msa0599540:CDS | 50.0% | |
| GCTAGGGATTTCGCTAACAG+GGG | - | chr4_2:39335712-39335731 | Msa0599540:CDS | 50.0% | |
| CTTGCTCATCAGAAATGGGC+CGG | - | chr4_2:39335793-39335812 | Msa0599540:CDS | 50.0% | |
| !! | CACCACCCTGGATAGTTTTG+AGG | + | chr4_2:39335840-39335859 | None:intergenic | 50.0% |
| TCAACCGCTGCAATGGGAAA+AGG | - | chr4_2:39335865-39335884 | Msa0599540:CDS | 50.0% | |
| !! | AAGGAAACATGGACTAGGCC+AGG | - | chr4_2:39336181-39336200 | Msa0599540:CDS | 50.0% |
| CTATCAATGCCCACTGTTCC+TGG | + | chr4_2:39336202-39336221 | None:intergenic | 50.0% | |
| ! | AAGCATGGTGGAACACTGAG+AGG | - | chr4_2:39334330-39334349 | Msa0599540:CDS | 50.0% |
| !! | TGCTGTTCTGTTGGCTTGGT+GGG | + | chr4_2:39334471-39334490 | None:intergenic | 50.0% |
| !! | ATGCTGTTCTGTTGGCTTGG+TGG | + | chr4_2:39334472-39334491 | None:intergenic | 50.0% |
| ! | TCGATGCTGTTCTGTTGGCT+TGG | + | chr4_2:39334475-39334494 | None:intergenic | 50.0% |
| TTGTTCGGGACAGTGTCGTA+AGG | + | chr4_2:39334632-39334651 | None:intergenic | 50.0% | |
| ! | GCTGATGGTGACACTGGATT+CGG | - | chr4_2:39334773-39334792 | Msa0599540:CDS | 50.0% |
| TGCTGCTGGGATTCACATTG+AGG | - | chr4_2:39334844-39334863 | Msa0599540:CDS | 50.0% | |
| AAGAAATGCGGTCACATGGC+CGG | - | chr4_2:39334884-39334903 | Msa0599540:CDS | 50.0% | |
| ! | TCACATGGCCGGGAAAGTTT+TGG | - | chr4_2:39334895-39334914 | Msa0599540:CDS | 50.0% |
| GTGACGAATCCGAGTCTGAA+GGG | - | chr4_2:39335073-39335092 | Msa0599540:CDS | 50.0% | |
| TGGAGCTGAACTTCAGGCAT+TGG | - | chr4_2:39335144-39335163 | Msa0599540:CDS | 50.0% | |
| !! | AGCTGAACTTCAGGCATTGG+AGG | - | chr4_2:39335147-39335166 | Msa0599540:CDS | 50.0% |
| !! | TTCAGGCATTGGAGGATCAG+TGG | - | chr4_2:39335155-39335174 | Msa0599540:CDS | 50.0% |
| ACGAGGATGAGAAAAGGAGG+AGG | - | chr4_2:39335245-39335264 | Msa0599540:CDS | 50.0% | |
| AAAGGAGGAGGTTGAACGAG+TGG | - | chr4_2:39335257-39335276 | Msa0599540:CDS | 50.0% | |
| CACCACACGCTGATCTTATC+TGG | - | chr4_2:39335452-39335471 | Msa0599540:CDS | 50.0% | |
| GCTAGGGATTTCGCTAACAG+GGG | - | chr4_2:39335712-39335731 | Msa0599540:CDS | 50.0% | |
| CTTGCTCATCAGAAATGGGC+CGG | - | chr4_2:39335793-39335812 | Msa0599540:CDS | 50.0% | |
| !! | CACCACCCTGGATAGTTTTG+AGG | + | chr4_2:39335840-39335859 | None:intergenic | 50.0% |
| TCAACCGCTGCAATGGGAAA+AGG | - | chr4_2:39335865-39335884 | Msa0599540:CDS | 50.0% | |
| !! | AAGGAAACATGGACTAGGCC+AGG | - | chr4_2:39336181-39336200 | Msa0599540:CDS | 50.0% |
| CTATCAATGCCCACTGTTCC+TGG | + | chr4_2:39336202-39336221 | None:intergenic | 50.0% | |
| GGCTACTTCGGACTCGAATC+TGG | + | chr4_2:39334303-39334322 | None:intergenic | 55.0% | |
| ATTCGAGTCCGAAGTAGCCG+AGG | - | chr4_2:39334304-39334323 | Msa0599540:CDS | 55.0% | |
| TGCTTGCACCTCGGCTACTT+CGG | + | chr4_2:39334315-39334334 | None:intergenic | 55.0% | |
| AAGTAGCCGAGGTGCAAGCA+TGG | - | chr4_2:39334315-39334334 | Msa0599540:CDS | 55.0% | |
| GTTCCACCATGCTTGCACCT+CGG | + | chr4_2:39334324-39334343 | None:intergenic | 55.0% | |
| GAGGATGAGTATGAGCCGAG+AGG | - | chr4_2:39334706-39334725 | Msa0599540:CDS | 55.0% | |
| GCGTTCTTGCTCGATCCTCT+CGG | + | chr4_2:39334724-39334743 | None:intergenic | 55.0% | |
| GATGGTGACACTGGATTCGG+TGG | - | chr4_2:39334776-39334795 | Msa0599540:CDS | 55.0% | |
| AGAAATGCGGTCACATGGCC+GGG | - | chr4_2:39334885-39334904 | Msa0599540:CDS | 55.0% | |
| !!! | GGCCGGGAAAGTTTTGGTTG+CGG | - | chr4_2:39334901-39334920 | Msa0599540:CDS | 55.0% |
| CGTGACGAATCCGAGTCTGA+AGG | - | chr4_2:39335072-39335091 | Msa0599540:CDS | 55.0% | |
| GTTACCGCTGCTGTTGTTCG+CGG | - | chr4_2:39335418-39335437 | Msa0599540:CDS | 55.0% | |
| ACAACCGCGAACAACAGCAG+CGG | + | chr4_2:39335425-39335444 | None:intergenic | 55.0% | |
| TGTTGCGTCAACCGCTGCAA+TGG | - | chr4_2:39335858-39335877 | Msa0599540:CDS | 55.0% | |
| GTTGCGTCAACCGCTGCAAT+GGG | - | chr4_2:39335859-39335878 | Msa0599540:CDS | 55.0% | |
| !! | ATGGACTAGGCCAGGAACAG+TGG | - | chr4_2:39336189-39336208 | Msa0599540:CDS | 55.0% |
| ! | TGGACTAGGCCAGGAACAGT+GGG | - | chr4_2:39336190-39336209 | Msa0599540:CDS | 55.0% |
| TGGCAGCATGGTGGTTGCTA+AGG | - | chr4_2:39336228-39336247 | Msa0599540:CDS | 55.0% | |
| GGCTACTTCGGACTCGAATC+TGG | + | chr4_2:39334303-39334322 | None:intergenic | 55.0% | |
| ATTCGAGTCCGAAGTAGCCG+AGG | - | chr4_2:39334304-39334323 | Msa0599540:CDS | 55.0% | |
| TGCTTGCACCTCGGCTACTT+CGG | + | chr4_2:39334315-39334334 | None:intergenic | 55.0% | |
| AAGTAGCCGAGGTGCAAGCA+TGG | - | chr4_2:39334315-39334334 | Msa0599540:CDS | 55.0% | |
| GTTCCACCATGCTTGCACCT+CGG | + | chr4_2:39334324-39334343 | None:intergenic | 55.0% | |
| GAGGATGAGTATGAGCCGAG+AGG | - | chr4_2:39334706-39334725 | Msa0599540:CDS | 55.0% | |
| GCGTTCTTGCTCGATCCTCT+CGG | + | chr4_2:39334724-39334743 | None:intergenic | 55.0% | |
| GATGGTGACACTGGATTCGG+TGG | - | chr4_2:39334776-39334795 | Msa0599540:CDS | 55.0% | |
| AGAAATGCGGTCACATGGCC+GGG | - | chr4_2:39334885-39334904 | Msa0599540:CDS | 55.0% | |
| !!! | GGCCGGGAAAGTTTTGGTTG+CGG | - | chr4_2:39334901-39334920 | Msa0599540:CDS | 55.0% |
| CGTGACGAATCCGAGTCTGA+AGG | - | chr4_2:39335072-39335091 | Msa0599540:CDS | 55.0% | |
| GTTACCGCTGCTGTTGTTCG+CGG | - | chr4_2:39335418-39335437 | Msa0599540:CDS | 55.0% | |
| ACAACCGCGAACAACAGCAG+CGG | + | chr4_2:39335425-39335444 | None:intergenic | 55.0% | |
| TGTTGCGTCAACCGCTGCAA+TGG | - | chr4_2:39335858-39335877 | Msa0599540:CDS | 55.0% | |
| GTTGCGTCAACCGCTGCAAT+GGG | - | chr4_2:39335859-39335878 | Msa0599540:CDS | 55.0% | |
| !! | ATGGACTAGGCCAGGAACAG+TGG | - | chr4_2:39336189-39336208 | Msa0599540:CDS | 55.0% |
| ! | TGGACTAGGCCAGGAACAGT+GGG | - | chr4_2:39336190-39336209 | Msa0599540:CDS | 55.0% |
| TGGCAGCATGGTGGTTGCTA+AGG | - | chr4_2:39336228-39336247 | Msa0599540:CDS | 55.0% | |
| TAGCCGAGGTGCAAGCATGG+TGG | - | chr4_2:39334318-39334337 | Msa0599540:CDS | 60.0% | |
| !! | TTTGTCGAACGCGGTGCTGC+TGG | - | chr4_2:39334830-39334849 | Msa0599540:CDS | 60.0% |
| !! | TTGTCGAACGCGGTGCTGCT+GGG | - | chr4_2:39334831-39334850 | Msa0599540:CDS | 60.0% |
| TAGCCGAGGTGCAAGCATGG+TGG | - | chr4_2:39334318-39334337 | Msa0599540:CDS | 60.0% | |
| !! | TTTGTCGAACGCGGTGCTGC+TGG | - | chr4_2:39334830-39334849 | Msa0599540:CDS | 60.0% |
| !! | TTGTCGAACGCGGTGCTGCT+GGG | - | chr4_2:39334831-39334850 | Msa0599540:CDS | 60.0% |
| CGGTTGACGCAACACCACCC+TGG | + | chr4_2:39335852-39335871 | None:intergenic | 65.0% | |
| CGGTTGACGCAACACCACCC+TGG | + | chr4_2:39335852-39335871 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 39334287 | 39336261 | 39334287 | ID=Msa0599540;Name=Msa0599540 |
| chr4_2 | mRNA | 39334287 | 39336261 | 39334287 | ID=Msa0599540-mRNA-1;Parent=Msa0599540;Name=Msa0599540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|566 |
| chr4_2 | exon | 39334662 | 39336261 | 39334662 | ID=Msa0599540-mRNA-1:exon:8603;Parent=Msa0599540-mRNA-1 |
| chr4_2 | exon | 39334287 | 39334387 | 39334287 | ID=Msa0599540-mRNA-1:exon:8602;Parent=Msa0599540-mRNA-1 |
| chr4_2 | CDS | 39334662 | 39336261 | 39334662 | ID=Msa0599540-mRNA-1:cds;Parent=Msa0599540-mRNA-1 |
| chr4_2 | CDS | 39334287 | 39334387 | 39334287 | ID=Msa0599540-mRNA-1:cds;Parent=Msa0599540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
