Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640230 | XP_013455625.1 | 98.940 | 566 | 6 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640230 | sp|P45457|ACEA2_SOYBN | 88.730 | 559 | 61 | 1 | 8 | 566 | 1 | 557 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640230 | A0A072UJP2 | 98.940 | 566 | 6 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0640230 | Msa0679110 | 0.934103 | 6.773255e-96 | -8.615850e-47 |
| Msa0640230 | Msa1200420 | 0.830233 | 3.295273e-55 | -8.615850e-47 |
| Msa0543780 | Msa0640230 | 0.938106 | 1.163647e-98 | -8.615850e-47 |
| Msa0599540 | Msa0640230 | 0.926582 | 3.845947e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640230 | MtrunA17_Chr4g0024191 | 98.940 | 566 | 6 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640230 | AT3G21720.1 | 77.562 | 566 | 126 | 1 | 1 | 566 | 12 | 576 | 0.0 | 957 |
Find 140 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCATCAGTTTATTT+TGG | 0.128571 | 4_3:-38374671 | Msa0640230:CDS |
| TCTCATCCTCGTTAACATTT+TGG | 0.176405 | 4_3:+38374485 | None:intergenic |
| TGTTACTGAAGATCAATTTA+AGG | 0.237060 | 4_3:-38373559 | Msa0640230:CDS |
| TTTGTCTTAGGTTTCCTCTT+AGG | 0.247843 | 4_3:+38375322 | None:intergenic |
| ATGATCCCTTGTATCAATAT+TGG | 0.254265 | 4_3:+38374684 | None:intergenic |
| CACCACACGCTGATCTTATC+TGG | 0.275848 | 4_3:-38374267 | Msa0640230:CDS |
| CTATCAATGCCCGCTGTTCC+TGG | 0.278022 | 4_3:+38373522 | None:intergenic |
| AGTATAGCTCTTTCACATTC+TGG | 0.278293 | 4_3:+38373470 | None:intergenic |
| TAAAACCCTTCTCTAGTTCT+AGG | 0.287639 | 4_3:+38374340 | None:intergenic |
| TTTGTCGAACGTGGTGCTGC+TGG | 0.290119 | 4_3:-38374889 | Msa0640230:CDS |
| GGTCTCAAATAATCAATAAA+AGG | 0.302353 | 4_3:+38374976 | None:intergenic |
| TTGAGGCATAGGTTTGTCTT+AGG | 0.310375 | 4_3:+38375310 | None:intergenic |
| AAGGCTTCAATTTGATGTTA+TGG | 0.316260 | 4_3:-38374764 | Msa0640230:CDS |
| ATGGCACAAGGATTTGCTTC+TGG | 0.324415 | 4_3:-38374604 | Msa0640230:CDS |
| AAAAGATGTTCAACTTTGTT+CGG | 0.327767 | 4_3:+38375075 | None:intergenic |
| TCACATGGCCGGGAAAGTTT+TGG | 0.333776 | 4_3:-38374824 | Msa0640230:CDS |
| TAGGTGTGAGAAACCTCTTT+TGG | 0.344319 | 4_3:-38374375 | Msa0640230:CDS |
| TTGTCTTAGGTTTCCTCTTA+GGG | 0.348543 | 4_3:+38375323 | None:intergenic |
| TGTGTGCACTCAACCACATT+TGG | 0.352120 | 4_3:+38374229 | None:intergenic |
| CGCGGTTCTGTTGGCTTGGT+GGG | 0.353855 | 4_3:+38375251 | None:intergenic |
| AAAGATGTTCAACTTTGTTC+GGG | 0.357887 | 4_3:+38375076 | None:intergenic |
| AGGCTTCAATTTGATGTTAT+GGG | 0.358560 | 4_3:-38374763 | Msa0640230:CDS |
| GGCTACTTCGGACTCGAATC+TGG | 0.358775 | 4_3:+38375419 | None:intergenic |
| ATTCCTAAGATCGCTCAGTT+AGG | 0.369228 | 4_3:-38374094 | Msa0640230:CDS |
| GCGTTCTTGCTCGATCTTCT+CGG | 0.369562 | 4_3:+38374998 | None:intergenic |
| CGGTTAGTGAGCATATTAAT+AGG | 0.379671 | 4_3:-38374798 | Msa0640230:CDS |
| AACATTCGGTGCACTTGATC+CGG | 0.382426 | 4_3:-38375223 | Msa0640230:CDS |
| AACCGCAACCAAAACTTTCC+CGG | 0.383568 | 4_3:+38374816 | None:intergenic |
| TACCCTAACTGAGCGATCTT+AGG | 0.383967 | 4_3:+38374091 | None:intergenic |
| AGGGAGATTTCTGAGAGATT+AGG | 0.384886 | 4_3:-38374394 | Msa0640230:CDS |
| GCCATTTGAGTGACTTGAAC+CGG | 0.391193 | 4_3:+38375204 | None:intergenic |
| AAAGAGTGGAGCTGAACTTC+AGG | 0.398181 | 4_3:-38374581 | Msa0640230:CDS |
| ATACACTTGCTCATCAGAAA+TGG | 0.399650 | 4_3:-38373931 | Msa0640230:CDS |
| TATGGGAGTCGAAACTGTTT+TGG | 0.409170 | 4_3:-38374746 | Msa0640230:CDS |
| AAAGAGTTTGGCAACAGTTA+TGG | 0.409607 | 4_3:-38374623 | Msa0640230:CDS |
| GTGTCACCATCAGCTATTAT+CGG | 0.409854 | 4_3:+38374955 | None:intergenic |
| CACTCAAATGGCAAAACACT+TGG | 0.421562 | 4_3:-38375193 | Msa0640230:CDS |
| GCGGGCATTGATAGAGATAA+TGG | 0.439134 | 4_3:-38373513 | Msa0640230:CDS |
| TCGACGCGGTTCTGTTGGCT+TGG | 0.439953 | 4_3:+38375247 | None:intergenic |
| CGAGAAATGTCTTTCAATTG+AGG | 0.440558 | 4_3:-38374422 | Msa0640230:CDS |
| TGTTCTCGACGCGGTTCTGT+TGG | 0.442873 | 4_3:+38375242 | None:intergenic |
| GAGTCTGAAGGGAAAGAGTT+TGG | 0.453937 | 4_3:-38374635 | Msa0640230:CDS |
| AAGATCAGGACCAGGTTCAT+TGG | 0.454150 | 4_3:+38375122 | None:intergenic |
| GGATAACTCATTTGAGGCAT+AGG | 0.457391 | 4_3:+38375299 | None:intergenic |
| AGAAATGCGGTCACATGGCC+GGG | 0.459846 | 4_3:-38374834 | Msa0640230:CDS |
| TTCCTAAGATCGCTCAGTTA+GGG | 0.462132 | 4_3:-38374093 | Msa0640230:CDS |
| ACGCGGTTCTGTTGGCTTGG+TGG | 0.462179 | 4_3:+38375250 | None:intergenic |
| TAATCACTTCAACATTTGCT+AGG | 0.466556 | 4_3:-38374024 | Msa0640230:CDS |
| TTGGACACAATTTACGTCTC+AGG | 0.472223 | 4_3:-38375174 | Msa0640230:CDS |
| AGCTGAACTTCAGGCATTGG+AGG | 0.474914 | 4_3:-38374572 | Msa0640230:CDS |
| AAGAAATGCGGTCACATGGC+CGG | 0.477163 | 4_3:-38374835 | Msa0640230:CDS |
| TGCGCAGTTGAAGACTTTCT+CGG | 0.480621 | 4_3:-38374533 | Msa0640230:CDS |
| TGCTTGCACCTCGGCTACTT+CGG | 0.480788 | 4_3:+38375407 | None:intergenic |
| TCGGTACCTCAAAACTATCC+AGG | 0.481959 | 4_3:-38373888 | Msa0640230:CDS |
| AAAGACGTAGTTTCCCTAAG+AGG | 0.484308 | 4_3:-38375336 | Msa0640230:CDS |
| TTGTCGAACGTGGTGCTGCT+GGG | 0.484649 | 4_3:-38374888 | Msa0640230:CDS |
| CACACAACCACCAATGAACC+TGG | 0.503080 | 4_3:-38375132 | Msa0640230:CDS |
| TGGAGCTGAACTTCAGGCAT+TGG | 0.503758 | 4_3:-38374575 | Msa0640230:CDS |
| GTTACCGCGGCTATTGTTCG+TGG | 0.504473 | 4_3:-38374301 | Msa0640230:CDS |
| AAACTCTTTCCCTTCAGACT+CGG | 0.508721 | 4_3:+38374637 | None:intergenic |
| GTTGAAGACTTTCTCGGAAG+CGG | 0.511981 | 4_3:-38374527 | Msa0640230:CDS |
| TACACTTGCTCATCAGAAAT+GGG | 0.513240 | 4_3:-38373930 | Msa0640230:CDS |
| TCAACCGCTGCAATGGGAAA+AGG | 0.513835 | 4_3:-38373854 | Msa0640230:intron |
| TGGCAGCATGGTGGTTGCTA+AGG | 0.514689 | 4_3:-38373493 | Msa0640230:CDS |
| TAAGGATAATCAGCAAGATC+AGG | 0.515265 | 4_3:+38375108 | None:intergenic |
| TGTTGCGTCAACCGCTGCAA+TGG | 0.518520 | 4_3:-38373861 | Msa0640230:CDS |
| TATGAGTGATATTGAAATGA+GGG | 0.519337 | 4_3:-38374122 | Msa0640230:CDS |
| TTCAATCCAATATTGATACA+AGG | 0.519422 | 4_3:-38374690 | Msa0640230:CDS |
| TCCGGTTCAAGTCACTCAAA+TGG | 0.523770 | 4_3:-38375205 | Msa0640230:CDS |
| GTCTTTCAATTGAGGAAGGT+AGG | 0.525513 | 4_3:-38374414 | Msa0640230:CDS |
| AGAACCGCGTCGAGAACATT+CGG | 0.526479 | 4_3:-38375237 | Msa0640230:CDS |
| AATCACTTCAACATTTGCTA+GGG | 0.528772 | 4_3:-38374023 | Msa0640230:CDS |
| TGGCAGTTCATAACTGTTGG+AGG | 0.529681 | 4_3:-38374064 | Msa0640230:CDS |
| GCTGATGGTGACACTGGATT+CGG | 0.531005 | 4_3:-38374946 | Msa0640230:CDS |
| AAAGGAGGAGGTTGAACGAG+TGG | 0.536117 | 4_3:-38374462 | Msa0640230:CDS |
| GTTGCGTCAACCGCTGCAAT+GGG | 0.541092 | 4_3:-38373860 | Msa0640230:CDS |
| TCTTTCAATTGAGGAAGGTA+GGG | 0.543833 | 4_3:-38374413 | Msa0640230:CDS |
| AAGGAAACATGGACTAGGCC+AGG | 0.547173 | 4_3:-38373540 | Msa0640230:CDS |
| ATCAGGACCAGGTTCATTGG+TGG | 0.547518 | 4_3:+38375125 | None:intergenic |
| GAAGCATCCCAATTAAAAGA+TGG | 0.548954 | 4_3:+38374148 | None:intergenic |
| GGATTTGCTTCTGGAAAGAG+TGG | 0.553663 | 4_3:-38374595 | Msa0640230:CDS |
| GACTAAGAAATGCGGTCACA+TGG | 0.553775 | 4_3:-38374839 | Msa0640230:CDS |
| TGGACTAGGCCAGGAACAGC+GGG | 0.558531 | 4_3:-38373531 | Msa0640230:CDS |
| GCAAGTCCCAATCCCAAAAG+AGG | 0.559513 | 4_3:+38374362 | None:intergenic |
| ATAATAGCTGATGGTGACAC+TGG | 0.566898 | 4_3:-38374952 | Msa0640230:CDS |
| ATGTTAACGAGGATGAGAAA+AGG | 0.568265 | 4_3:-38374480 | Msa0640230:CDS |
| TTGTTCGGGACAGTGTCGTA+AGG | 0.568513 | 4_3:+38375090 | None:intergenic |
| GAGTGCACACAGTTTGCTGA+AGG | 0.569482 | 4_3:-38374217 | Msa0640230:CDS |
| TCAATCCAATATTGATACAA+GGG | 0.570551 | 4_3:-38374689 | Msa0640230:CDS |
| ACGAGGATGAGAAAAGGAGG+AGG | 0.572283 | 4_3:-38374474 | Msa0640230:CDS |
| AAGTATCCACAGATATTGCT+CGG | 0.578731 | 4_3:-38374184 | Msa0640230:CDS |
| ACACAATTTACGTCTCAGGC+TGG | 0.581139 | 4_3:-38375170 | Msa0640230:CDS |
| TGCTGCTGGGATTCACATTG+AGG | 0.582685 | 4_3:-38374875 | Msa0640230:CDS |
| CTTGCTCATCAGAAATGGGC+CGG | 0.586178 | 4_3:-38373926 | Msa0640230:CDS |
| GACTTGCCTAGAACTAGAGA+AGG | 0.586444 | 4_3:-38374346 | Msa0640230:CDS |
| GTATGAGTGATATTGAAATG+AGG | 0.589454 | 4_3:-38374123 | Msa0640230:CDS |
| AAATGTCTTTCAATTGAGGA+AGG | 0.590744 | 4_3:-38374418 | Msa0640230:CDS |
| AAGTAGCCGAGGTGCAAGCA+TGG | 0.591579 | 4_3:-38375404 | Msa0640230:CDS |
| TTCAGGCATTGGAGGATCAG+TGG | 0.592167 | 4_3:-38374564 | Msa0640230:CDS |
| TGTCGAAAGGATTCAAAGAG+AGG | 0.592801 | 4_3:-38373972 | Msa0640230:CDS |
| CGTGACGAATCCGAGTCTGA+AGG | 0.594026 | 4_3:-38374647 | Msa0640230:CDS |
| TTAACGAGGATGAGAAAAGG+AGG | 0.595598 | 4_3:-38374477 | Msa0640230:CDS |
| ACACGCTGATCTTATCTGGA+TGG | 0.596230 | 4_3:-38374263 | Msa0640230:CDS |
| CGGTACCTCAAAACTATCCA+GGG | 0.597608 | 4_3:-38373887 | Msa0640230:CDS |
| GTGTGGCAGTTCATAACTGT+TGG | 0.599082 | 4_3:-38374067 | Msa0640230:CDS |
| AAAGGATTCAAAGAGAGGAA+AGG | 0.602995 | 4_3:-38373967 | Msa0640230:CDS |
| GTGACGAATCCGAGTCTGAA+GGG | 0.606532 | 4_3:-38374646 | Msa0640230:CDS |
| TTAATAGGCTAGTTGCTGCA+AGG | 0.610273 | 4_3:-38374783 | Msa0640230:CDS |
| TTGGCAACAGTTATGGCACA+AGG | 0.611584 | 4_3:-38374616 | Msa0640230:CDS |
| CAAAGAGAGGAAAGGAACAA+TGG | 0.612502 | 4_3:-38373959 | Msa0640230:CDS |
| AAGATCAATTTAAGGAAACA+TGG | 0.613442 | 4_3:-38373551 | Msa0640230:CDS |
| AATTTAAGGAAACATGGACT+AGG | 0.614157 | 4_3:-38373545 | Msa0640230:CDS |
| GTTTAAAGGTTCTGTTACCG+CGG | 0.615374 | 4_3:-38374314 | Msa0640230:CDS |
| CGGTTGACGCAACACCACCC+TGG | 0.615584 | 4_3:+38373870 | None:intergenic |
| GGAAACAGCAAGTCCAAATG+TGG | 0.619509 | 4_3:-38374242 | Msa0640230:CDS |
| ATGGACTAGGCCAGGAACAG+CGG | 0.623476 | 4_3:-38373532 | Msa0640230:CDS |
| TTGAGACCGATAATAGCTGA+TGG | 0.627292 | 4_3:-38374961 | Msa0640230:CDS |
| GTGACCGCATTTCTTAGTCA+CGG | 0.630979 | 4_3:+38374843 | None:intergenic |
| CAAGAGCCAAAATGTTAACG+AGG | 0.635217 | 4_3:-38374491 | Msa0640230:CDS |
| ACAGAAAGCAAAGAGAAGAG+AGG | 0.637146 | 4_3:-38375032 | Msa0640230:CDS |
| ACTTGCCTAGAACTAGAGAA+GGG | 0.637521 | 4_3:-38374345 | Msa0640230:CDS |
| ATTCGAGTCCGAAGTAGCCG+AGG | 0.641135 | 4_3:-38375415 | Msa0640230:CDS |
| GAATGCTAGCTTATGTCGAA+AGG | 0.643433 | 4_3:-38373985 | Msa0640230:CDS |
| TCGCTCAGTTAGGGTATGTG+TGG | 0.644468 | 4_3:-38374084 | Msa0640230:CDS |
| TGATAGAGATAATGGCAGCA+TGG | 0.645388 | 4_3:-38373505 | Msa0640230:CDS |
| CCGGTGCGAATTACTATGAT+CGG | 0.645865 | 4_3:-38373907 | Msa0640230:CDS |
| TAATCAGCAAGATCAGGACC+AGG | 0.662714 | 4_3:+38375114 | None:intergenic |
| TAGCCGAGGTGCAAGCATGG+TGG | 0.664228 | 4_3:-38375401 | Msa0640230:CDS |
| AGTGCACACAGTTTGCTGAA+GGG | 0.671542 | 4_3:-38374216 | Msa0640230:CDS |
| TTGTATCCGAGCAATATCTG+TGG | 0.672590 | 4_3:+38374178 | None:intergenic |
| AAGCATGGTGGAACACTGAG+AGG | 0.675672 | 4_3:-38375389 | Msa0640230:CDS |
| GATGGTGACACTGGATTCGG+TGG | 0.684262 | 4_3:-38374943 | Msa0640230:CDS |
| GTTCCACCATGCTTGCACCT+CGG | 0.691495 | 4_3:+38375398 | None:intergenic |
| CCGATCATAGTAATTCGCAC+CGG | 0.697391 | 4_3:+38373907 | None:intergenic |
| ATCCAGATAAGATCAGCGTG+TGG | 0.728979 | 4_3:+38374265 | None:intergenic |
| TCTTCCGTGACTAAGAAATG+CGG | 0.729667 | 4_3:-38374847 | Msa0640230:CDS |
| ACAACCACGAACAATAGCCG+CGG | 0.738778 | 4_3:+38374297 | None:intergenic |
| TACCTCAAAACTATCCAGGG+TGG | 0.741495 | 4_3:-38373884 | Msa0640230:CDS |
| TAGAGATAATGGCAGCATGG+TGG | 0.765792 | 4_3:-38373502 | Msa0640230:CDS |
| TGCACCGAATGTTCTCGACG+CGG | 0.778136 | 4_3:+38375233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTAATGTTACAATTA+AGG | - | chr4_3:38375091-38375110 | Msa0640230:CDS | 10.0% |
| !!! | AATTTTTTTGAAAAAAACAA+TGG | - | chr4_3:38375294-38375313 | Msa0640230:CDS | 10.0% |
| !!! | TTACGATTTTAATTTTTTAT+AGG | - | chr4_3:38375332-38375351 | Msa0640230:CDS | 10.0% |
| !! | TATAATTAATGTTACAATTA+AGG | - | chr4_3:38375091-38375110 | Msa0640230:CDS | 10.0% |
| !!! | AATTTTTTTGAAAAAAACAA+TGG | - | chr4_3:38375294-38375313 | Msa0640230:CDS | 10.0% |
| !!! | TTACGATTTTAATTTTTTAT+AGG | - | chr4_3:38375332-38375351 | Msa0640230:CDS | 10.0% |
| !!! | GTTTTTTTCAAAAAAATTAG+CGG | + | chr4_3:38375292-38375311 | None:intergenic | 15.0% |
| !!! | GTTTTTTTCAAAAAAATTAG+CGG | + | chr4_3:38375292-38375311 | None:intergenic | 15.0% |
| ! | AAAAGATGTTCAACTTTGTT+CGG | + | chr4_3:38373842-38373861 | None:intergenic | 25.0% |
| ! | GGTCTCAAATAATCAATAAA+AGG | + | chr4_3:38373941-38373960 | None:intergenic | 25.0% |
| ! | TTCAATCCAATATTGATACA+AGG | - | chr4_3:38374224-38374243 | Msa0640230:CDS | 25.0% |
| ! | TCAATCCAATATTGATACAA+GGG | - | chr4_3:38374225-38374244 | Msa0640230:CDS | 25.0% |
| ! | TATGAGTGATATTGAAATGA+GGG | - | chr4_3:38374792-38374811 | Msa0640230:CDS | 25.0% |
| ! | TGTTACTGAAGATCAATTTA+AGG | - | chr4_3:38375355-38375374 | Msa0640230:CDS | 25.0% |
| ! | AAGATCAATTTAAGGAAACA+TGG | - | chr4_3:38375363-38375382 | Msa0640230:CDS | 25.0% |
| ! | AAAAGATGTTCAACTTTGTT+CGG | + | chr4_3:38373842-38373861 | None:intergenic | 25.0% |
| ! | GGTCTCAAATAATCAATAAA+AGG | + | chr4_3:38373941-38373960 | None:intergenic | 25.0% |
| ! | TTCAATCCAATATTGATACA+AGG | - | chr4_3:38374224-38374243 | Msa0640230:CDS | 25.0% |
| ! | TCAATCCAATATTGATACAA+GGG | - | chr4_3:38374225-38374244 | Msa0640230:CDS | 25.0% |
| ! | TATGAGTGATATTGAAATGA+GGG | - | chr4_3:38374792-38374811 | Msa0640230:CDS | 25.0% |
| ! | TGTTACTGAAGATCAATTTA+AGG | - | chr4_3:38375355-38375374 | Msa0640230:CDS | 25.0% |
| ! | AAGATCAATTTAAGGAAACA+TGG | - | chr4_3:38375363-38375382 | Msa0640230:CDS | 25.0% |
| ! | CTTTTTGGATAACTCATTTG+AGG | + | chr4_3:38373624-38373643 | None:intergenic | 30.0% |
| ATGAGTTATCCAAAAAGCTA+TGG | - | chr4_3:38373627-38373646 | Msa0640230:intron | 30.0% | |
| AAAGATGTTCAACTTTGTTC+GGG | + | chr4_3:38373841-38373860 | None:intergenic | 30.0% | |
| AAGGCTTCAATTTGATGTTA+TGG | - | chr4_3:38374150-38374169 | Msa0640230:CDS | 30.0% | |
| AGGCTTCAATTTGATGTTAT+GGG | - | chr4_3:38374151-38374170 | Msa0640230:CDS | 30.0% | |
| ATGATCCCTTGTATCAATAT+TGG | + | chr4_3:38374233-38374252 | None:intergenic | 30.0% | |
| ! | AAGGGATCATCAGTTTATTT+TGG | - | chr4_3:38374243-38374262 | Msa0640230:CDS | 30.0% |
| !! | AGGGATCATCAGTTTATTTT+GGG | - | chr4_3:38374244-38374263 | Msa0640230:CDS | 30.0% |
| AAATGTCTTTCAATTGAGGA+AGG | - | chr4_3:38374496-38374515 | Msa0640230:CDS | 30.0% | |
| ! | ATCTTTCGCCATCTTTTAAT+TGG | - | chr4_3:38374758-38374777 | Msa0640230:CDS | 30.0% |
| !! | TCTTTCGCCATCTTTTAATT+GGG | - | chr4_3:38374759-38374778 | Msa0640230:CDS | 30.0% |
| !! | ATCTTTTAATTGGGATGCTT+CGG | - | chr4_3:38374768-38374787 | Msa0640230:CDS | 30.0% |
| GTATGAGTGATATTGAAATG+AGG | - | chr4_3:38374791-38374810 | Msa0640230:CDS | 30.0% | |
| TAATCACTTCAACATTTGCT+AGG | - | chr4_3:38374890-38374909 | Msa0640230:CDS | 30.0% | |
| ! | AATCACTTCAACATTTGCTA+GGG | - | chr4_3:38374891-38374910 | Msa0640230:CDS | 30.0% |
| AGTGACTCTAAGTAATATCA+AGG | + | chr4_3:38375154-38375173 | None:intergenic | 30.0% | |
| CATCAAAAACCTTGATGTTA+CGG | - | chr4_3:38375221-38375240 | Msa0640230:CDS | 30.0% | |
| ATCAAAAACCTTGATGTTAC+GGG | - | chr4_3:38375222-38375241 | Msa0640230:CDS | 30.0% | |
| !! | ATAACGAGGGTTTTCTAAAA+AGG | + | chr4_3:38375268-38375287 | None:intergenic | 30.0% |
| AAAAATTAGCGGTATAACGA+GGG | + | chr4_3:38375281-38375300 | None:intergenic | 30.0% | |
| AAAAAATTAGCGGTATAACG+AGG | + | chr4_3:38375282-38375301 | None:intergenic | 30.0% | |
| AATTTAAGGAAACATGGACT+AGG | - | chr4_3:38375369-38375388 | Msa0640230:CDS | 30.0% | |
| ! | CTTTTTGGATAACTCATTTG+AGG | + | chr4_3:38373624-38373643 | None:intergenic | 30.0% |
| ATGAGTTATCCAAAAAGCTA+TGG | - | chr4_3:38373627-38373646 | Msa0640230:intron | 30.0% | |
| AAAGATGTTCAACTTTGTTC+GGG | + | chr4_3:38373841-38373860 | None:intergenic | 30.0% | |
| AAGGCTTCAATTTGATGTTA+TGG | - | chr4_3:38374150-38374169 | Msa0640230:CDS | 30.0% | |
| AGGCTTCAATTTGATGTTAT+GGG | - | chr4_3:38374151-38374170 | Msa0640230:CDS | 30.0% | |
| ATGATCCCTTGTATCAATAT+TGG | + | chr4_3:38374233-38374252 | None:intergenic | 30.0% | |
| ! | AAGGGATCATCAGTTTATTT+TGG | - | chr4_3:38374243-38374262 | Msa0640230:CDS | 30.0% |
| !! | AGGGATCATCAGTTTATTTT+GGG | - | chr4_3:38374244-38374263 | Msa0640230:CDS | 30.0% |
| AAATGTCTTTCAATTGAGGA+AGG | - | chr4_3:38374496-38374515 | Msa0640230:CDS | 30.0% | |
| ! | ATCTTTCGCCATCTTTTAAT+TGG | - | chr4_3:38374758-38374777 | Msa0640230:CDS | 30.0% |
| !! | TCTTTCGCCATCTTTTAATT+GGG | - | chr4_3:38374759-38374778 | Msa0640230:CDS | 30.0% |
| !! | ATCTTTTAATTGGGATGCTT+CGG | - | chr4_3:38374768-38374787 | Msa0640230:CDS | 30.0% |
| GTATGAGTGATATTGAAATG+AGG | - | chr4_3:38374791-38374810 | Msa0640230:CDS | 30.0% | |
| TAATCACTTCAACATTTGCT+AGG | - | chr4_3:38374890-38374909 | Msa0640230:CDS | 30.0% | |
| ! | AATCACTTCAACATTTGCTA+GGG | - | chr4_3:38374891-38374910 | Msa0640230:CDS | 30.0% |
| AGTGACTCTAAGTAATATCA+AGG | + | chr4_3:38375154-38375173 | None:intergenic | 30.0% | |
| CATCAAAAACCTTGATGTTA+CGG | - | chr4_3:38375221-38375240 | Msa0640230:CDS | 30.0% | |
| ATCAAAAACCTTGATGTTAC+GGG | - | chr4_3:38375222-38375241 | Msa0640230:CDS | 30.0% | |
| !! | ATAACGAGGGTTTTCTAAAA+AGG | + | chr4_3:38375268-38375287 | None:intergenic | 30.0% |
| AAAAATTAGCGGTATAACGA+GGG | + | chr4_3:38375281-38375300 | None:intergenic | 30.0% | |
| AAAAAATTAGCGGTATAACG+AGG | + | chr4_3:38375282-38375301 | None:intergenic | 30.0% | |
| AATTTAAGGAAACATGGACT+AGG | - | chr4_3:38375369-38375388 | Msa0640230:CDS | 30.0% | |
| ! | TTTTGCTGAGTATGGTCTTT+GGG | + | chr4_3:38373561-38373580 | None:intergenic | 35.0% |
| TTGTCTTAGGTTTCCTCTTA+GGG | + | chr4_3:38373594-38373613 | None:intergenic | 35.0% | |
| TTTGTCTTAGGTTTCCTCTT+AGG | + | chr4_3:38373595-38373614 | None:intergenic | 35.0% | |
| TAAGGATAATCAGCAAGATC+AGG | + | chr4_3:38373809-38373828 | None:intergenic | 35.0% | |
| CGGTTAGTGAGCATATTAAT+AGG | - | chr4_3:38374116-38374135 | Msa0640230:CDS | 35.0% | |
| AAAGAGTTTGGCAACAGTTA+TGG | - | chr4_3:38374291-38374310 | Msa0640230:CDS | 35.0% | |
| ! | TCTCATCCTCGTTAACATTT+TGG | + | chr4_3:38374432-38374451 | None:intergenic | 35.0% |
| ATGTTAACGAGGATGAGAAA+AGG | - | chr4_3:38374434-38374453 | Msa0640230:CDS | 35.0% | |
| CGAGAAATGTCTTTCAATTG+AGG | - | chr4_3:38374492-38374511 | Msa0640230:CDS | 35.0% | |
| TCTTTCAATTGAGGAAGGTA+GGG | - | chr4_3:38374501-38374520 | Msa0640230:CDS | 35.0% | |
| !! | TAAAACCCTTCTCTAGTTCT+AGG | + | chr4_3:38374577-38374596 | None:intergenic | 35.0% |
| ! | GAAGGGTTTTACAGGTTTAA+AGG | - | chr4_3:38374586-38374605 | Msa0640230:CDS | 35.0% |
| AAGTATCCACAGATATTGCT+CGG | - | chr4_3:38374730-38374749 | Msa0640230:CDS | 35.0% | |
| ! | GAAGCATCCCAATTAAAAGA+TGG | + | chr4_3:38374769-38374788 | None:intergenic | 35.0% |
| !! | TCTTTTAATTGGGATGCTTC+GGG | - | chr4_3:38374769-38374788 | Msa0640230:CDS | 35.0% |
| AAAGGATTCAAAGAGAGGAA+AGG | - | chr4_3:38374947-38374966 | Msa0640230:CDS | 35.0% | |
| ATACACTTGCTCATCAGAAA+TGG | - | chr4_3:38374983-38375002 | Msa0640230:CDS | 35.0% | |
| TACACTTGCTCATCAGAAAT+GGG | - | chr4_3:38374984-38375003 | Msa0640230:CDS | 35.0% | |
| CTTAGAGTCACTATCAAATG+TGG | - | chr4_3:38375162-38375181 | Msa0640230:CDS | 35.0% | |
| AAATGTGGCTAACGTCAATT+TGG | - | chr4_3:38375177-38375196 | Msa0640230:CDS | 35.0% | |
| AATGTGGCTAACGTCAATTT+GGG | - | chr4_3:38375178-38375197 | Msa0640230:CDS | 35.0% | |
| ! | TTTTGCTGAGTATGGTCTTT+GGG | + | chr4_3:38373561-38373580 | None:intergenic | 35.0% |
| TTGTCTTAGGTTTCCTCTTA+GGG | + | chr4_3:38373594-38373613 | None:intergenic | 35.0% | |
| TTTGTCTTAGGTTTCCTCTT+AGG | + | chr4_3:38373595-38373614 | None:intergenic | 35.0% | |
| TAAGGATAATCAGCAAGATC+AGG | + | chr4_3:38373809-38373828 | None:intergenic | 35.0% | |
| CGGTTAGTGAGCATATTAAT+AGG | - | chr4_3:38374116-38374135 | Msa0640230:CDS | 35.0% | |
| AAAGAGTTTGGCAACAGTTA+TGG | - | chr4_3:38374291-38374310 | Msa0640230:CDS | 35.0% | |
| ! | TCTCATCCTCGTTAACATTT+TGG | + | chr4_3:38374432-38374451 | None:intergenic | 35.0% |
| ATGTTAACGAGGATGAGAAA+AGG | - | chr4_3:38374434-38374453 | Msa0640230:CDS | 35.0% | |
| CGAGAAATGTCTTTCAATTG+AGG | - | chr4_3:38374492-38374511 | Msa0640230:CDS | 35.0% | |
| TCTTTCAATTGAGGAAGGTA+GGG | - | chr4_3:38374501-38374520 | Msa0640230:CDS | 35.0% | |
| !! | TAAAACCCTTCTCTAGTTCT+AGG | + | chr4_3:38374577-38374596 | None:intergenic | 35.0% |
| ! | GAAGGGTTTTACAGGTTTAA+AGG | - | chr4_3:38374586-38374605 | Msa0640230:CDS | 35.0% |
| AAGTATCCACAGATATTGCT+CGG | - | chr4_3:38374730-38374749 | Msa0640230:CDS | 35.0% | |
| ! | GAAGCATCCCAATTAAAAGA+TGG | + | chr4_3:38374769-38374788 | None:intergenic | 35.0% |
| !! | TCTTTTAATTGGGATGCTTC+GGG | - | chr4_3:38374769-38374788 | Msa0640230:CDS | 35.0% |
| AAAGGATTCAAAGAGAGGAA+AGG | - | chr4_3:38374947-38374966 | Msa0640230:CDS | 35.0% | |
| ATACACTTGCTCATCAGAAA+TGG | - | chr4_3:38374983-38375002 | Msa0640230:CDS | 35.0% | |
| TACACTTGCTCATCAGAAAT+GGG | - | chr4_3:38374984-38375003 | Msa0640230:CDS | 35.0% | |
| CTTAGAGTCACTATCAAATG+TGG | - | chr4_3:38375162-38375181 | Msa0640230:CDS | 35.0% | |
| AAATGTGGCTAACGTCAATT+TGG | - | chr4_3:38375177-38375196 | Msa0640230:CDS | 35.0% | |
| AATGTGGCTAACGTCAATTT+GGG | - | chr4_3:38375178-38375197 | Msa0640230:CDS | 35.0% | |
| ! | CTTTTGCTGAGTATGGTCTT+TGG | + | chr4_3:38373562-38373581 | None:intergenic | 40.0% |
| ! | ACTACGTCTTTTGCTGAGTA+TGG | + | chr4_3:38373569-38373588 | None:intergenic | 40.0% |
| AAAGACGTAGTTTCCCTAAG+AGG | - | chr4_3:38373578-38373597 | Msa0640230:intron | 40.0% | |
| TTGAGGCATAGGTTTGTCTT+AGG | + | chr4_3:38373607-38373626 | None:intergenic | 40.0% | |
| ! | GGATAACTCATTTGAGGCAT+AGG | + | chr4_3:38373618-38373637 | None:intergenic | 40.0% |
| ! | GAGAAGTCTCCATAGCTTTT+TGG | + | chr4_3:38373639-38373658 | None:intergenic | 40.0% |
| CACTCAAATGGCAAAACACT+TGG | - | chr4_3:38373721-38373740 | Msa0640230:intron | 40.0% | |
| TTGGACACAATTTACGTCTC+AGG | - | chr4_3:38373740-38373759 | Msa0640230:intron | 40.0% | |
| ACAGAAAGCAAAGAGAAGAG+AGG | - | chr4_3:38373882-38373901 | Msa0640230:CDS | 40.0% | |
| TTGAGACCGATAATAGCTGA+TGG | - | chr4_3:38373953-38373972 | Msa0640230:CDS | 40.0% | |
| GTGTCACCATCAGCTATTAT+CGG | + | chr4_3:38373962-38373981 | None:intergenic | 40.0% | |
| ! | ATAATAGCTGATGGTGACAC+TGG | - | chr4_3:38373962-38373981 | Msa0640230:CDS | 40.0% |
| ! | TGTAAGCTTTTTGTCGAACG+TGG | - | chr4_3:38374016-38374035 | Msa0640230:CDS | 40.0% |
| TCTTCCGTGACTAAGAAATG+CGG | - | chr4_3:38374067-38374086 | Msa0640230:CDS | 40.0% | |
| ! | TTAATAGGCTAGTTGCTGCA+AGG | - | chr4_3:38374131-38374150 | Msa0640230:CDS | 40.0% |
| ! | TATGGGAGTCGAAACTGTTT+TGG | - | chr4_3:38374168-38374187 | Msa0640230:CDS | 40.0% |
| AAACTCTTTCCCTTCAGACT+CGG | + | chr4_3:38374280-38374299 | None:intergenic | 40.0% | |
| CAAGAGCCAAAATGTTAACG+AGG | - | chr4_3:38374423-38374442 | Msa0640230:CDS | 40.0% | |
| TTAACGAGGATGAGAAAAGG+AGG | - | chr4_3:38374437-38374456 | Msa0640230:CDS | 40.0% | |
| GTCTTTCAATTGAGGAAGGT+AGG | - | chr4_3:38374500-38374519 | Msa0640230:CDS | 40.0% | |
| ! | AGGGAGATTTCTGAGAGATT+AGG | - | chr4_3:38374520-38374539 | Msa0640230:CDS | 40.0% |
| ! | TAGGTGTGAGAAACCTCTTT+TGG | - | chr4_3:38374539-38374558 | Msa0640230:CDS | 40.0% |
| ! | AGGTGTGAGAAACCTCTTTT+GGG | - | chr4_3:38374540-38374559 | Msa0640230:CDS | 40.0% |
| !!! | TGAGAAACCTCTTTTGGGAT+TGG | - | chr4_3:38374545-38374564 | Msa0640230:CDS | 40.0% |
| !!! | GAGAAACCTCTTTTGGGATT+GGG | - | chr4_3:38374546-38374565 | Msa0640230:CDS | 40.0% |
| ACTTGCCTAGAACTAGAGAA+GGG | - | chr4_3:38374569-38374588 | Msa0640230:CDS | 40.0% | |
| ! | GAACTAGAGAAGGGTTTTAC+AGG | - | chr4_3:38374578-38374597 | Msa0640230:CDS | 40.0% |
| GTTTAAAGGTTCTGTTACCG+CGG | - | chr4_3:38374600-38374619 | Msa0640230:CDS | 40.0% | |
| TTGTATCCGAGCAATATCTG+TGG | + | chr4_3:38374739-38374758 | None:intergenic | 40.0% | |
| ATTCCTAAGATCGCTCAGTT+AGG | - | chr4_3:38374820-38374839 | Msa0640230:CDS | 40.0% | |
| TTCCTAAGATCGCTCAGTTA+GGG | - | chr4_3:38374821-38374840 | Msa0640230:CDS | 40.0% | |
| ! | TTGCTAGGGATTTTGCTAAC+AGG | - | chr4_3:38374905-38374924 | Msa0640230:CDS | 40.0% |
| ! | TGCTAGGGATTTTGCTAACA+GGG | - | chr4_3:38374906-38374925 | Msa0640230:CDS | 40.0% |
| ! | GAATGCTAGCTTATGTCGAA+AGG | - | chr4_3:38374929-38374948 | Msa0640230:CDS | 40.0% |
| TGTCGAAAGGATTCAAAGAG+AGG | - | chr4_3:38374942-38374961 | Msa0640230:CDS | 40.0% | |
| CAAAGAGAGGAAAGGAACAA+TGG | - | chr4_3:38374955-38374974 | Msa0640230:CDS | 40.0% | |
| ! | CGTCAATTTGGGATCAATAG+TGG | - | chr4_3:38375189-38375208 | Msa0640230:CDS | 40.0% |
| ! | TGATAGAGATAATGGCAGCA+TGG | - | chr4_3:38375409-38375428 | Msa0640230:CDS | 40.0% |
| ! | CTTTTGCTGAGTATGGTCTT+TGG | + | chr4_3:38373562-38373581 | None:intergenic | 40.0% |
| ! | ACTACGTCTTTTGCTGAGTA+TGG | + | chr4_3:38373569-38373588 | None:intergenic | 40.0% |
| AAAGACGTAGTTTCCCTAAG+AGG | - | chr4_3:38373578-38373597 | Msa0640230:intron | 40.0% | |
| TTGAGGCATAGGTTTGTCTT+AGG | + | chr4_3:38373607-38373626 | None:intergenic | 40.0% | |
| ! | GGATAACTCATTTGAGGCAT+AGG | + | chr4_3:38373618-38373637 | None:intergenic | 40.0% |
| ! | GAGAAGTCTCCATAGCTTTT+TGG | + | chr4_3:38373639-38373658 | None:intergenic | 40.0% |
| CACTCAAATGGCAAAACACT+TGG | - | chr4_3:38373721-38373740 | Msa0640230:intron | 40.0% | |
| TTGGACACAATTTACGTCTC+AGG | - | chr4_3:38373740-38373759 | Msa0640230:intron | 40.0% | |
| ACAGAAAGCAAAGAGAAGAG+AGG | - | chr4_3:38373882-38373901 | Msa0640230:CDS | 40.0% | |
| TTGAGACCGATAATAGCTGA+TGG | - | chr4_3:38373953-38373972 | Msa0640230:CDS | 40.0% | |
| GTGTCACCATCAGCTATTAT+CGG | + | chr4_3:38373962-38373981 | None:intergenic | 40.0% | |
| ! | ATAATAGCTGATGGTGACAC+TGG | - | chr4_3:38373962-38373981 | Msa0640230:CDS | 40.0% |
| ! | TGTAAGCTTTTTGTCGAACG+TGG | - | chr4_3:38374016-38374035 | Msa0640230:CDS | 40.0% |
| TCTTCCGTGACTAAGAAATG+CGG | - | chr4_3:38374067-38374086 | Msa0640230:CDS | 40.0% | |
| ! | TTAATAGGCTAGTTGCTGCA+AGG | - | chr4_3:38374131-38374150 | Msa0640230:CDS | 40.0% |
| ! | TATGGGAGTCGAAACTGTTT+TGG | - | chr4_3:38374168-38374187 | Msa0640230:CDS | 40.0% |
| AAACTCTTTCCCTTCAGACT+CGG | + | chr4_3:38374280-38374299 | None:intergenic | 40.0% | |
| CAAGAGCCAAAATGTTAACG+AGG | - | chr4_3:38374423-38374442 | Msa0640230:CDS | 40.0% | |
| TTAACGAGGATGAGAAAAGG+AGG | - | chr4_3:38374437-38374456 | Msa0640230:CDS | 40.0% | |
| GTCTTTCAATTGAGGAAGGT+AGG | - | chr4_3:38374500-38374519 | Msa0640230:CDS | 40.0% | |
| ! | AGGGAGATTTCTGAGAGATT+AGG | - | chr4_3:38374520-38374539 | Msa0640230:CDS | 40.0% |
| ! | TAGGTGTGAGAAACCTCTTT+TGG | - | chr4_3:38374539-38374558 | Msa0640230:CDS | 40.0% |
| ! | AGGTGTGAGAAACCTCTTTT+GGG | - | chr4_3:38374540-38374559 | Msa0640230:CDS | 40.0% |
| !!! | TGAGAAACCTCTTTTGGGAT+TGG | - | chr4_3:38374545-38374564 | Msa0640230:CDS | 40.0% |
| !!! | GAGAAACCTCTTTTGGGATT+GGG | - | chr4_3:38374546-38374565 | Msa0640230:CDS | 40.0% |
| ACTTGCCTAGAACTAGAGAA+GGG | - | chr4_3:38374569-38374588 | Msa0640230:CDS | 40.0% | |
| ! | GAACTAGAGAAGGGTTTTAC+AGG | - | chr4_3:38374578-38374597 | Msa0640230:CDS | 40.0% |
| GTTTAAAGGTTCTGTTACCG+CGG | - | chr4_3:38374600-38374619 | Msa0640230:CDS | 40.0% | |
| TTGTATCCGAGCAATATCTG+TGG | + | chr4_3:38374739-38374758 | None:intergenic | 40.0% | |
| ATTCCTAAGATCGCTCAGTT+AGG | - | chr4_3:38374820-38374839 | Msa0640230:CDS | 40.0% | |
| TTCCTAAGATCGCTCAGTTA+GGG | - | chr4_3:38374821-38374840 | Msa0640230:CDS | 40.0% | |
| ! | TTGCTAGGGATTTTGCTAAC+AGG | - | chr4_3:38374905-38374924 | Msa0640230:CDS | 40.0% |
| ! | TGCTAGGGATTTTGCTAACA+GGG | - | chr4_3:38374906-38374925 | Msa0640230:CDS | 40.0% |
| ! | GAATGCTAGCTTATGTCGAA+AGG | - | chr4_3:38374929-38374948 | Msa0640230:CDS | 40.0% |
| TGTCGAAAGGATTCAAAGAG+AGG | - | chr4_3:38374942-38374961 | Msa0640230:CDS | 40.0% | |
| CAAAGAGAGGAAAGGAACAA+TGG | - | chr4_3:38374955-38374974 | Msa0640230:CDS | 40.0% | |
| ! | CGTCAATTTGGGATCAATAG+TGG | - | chr4_3:38375189-38375208 | Msa0640230:CDS | 40.0% |
| ! | TGATAGAGATAATGGCAGCA+TGG | - | chr4_3:38375409-38375428 | Msa0640230:CDS | 40.0% |
| !! | AACATTCGGTGCACTTGATC+CGG | - | chr4_3:38373691-38373710 | Msa0640230:intron | 45.0% |
| TCCGGTTCAAGTCACTCAAA+TGG | - | chr4_3:38373709-38373728 | Msa0640230:intron | 45.0% | |
| GCCATTTGAGTGACTTGAAC+CGG | + | chr4_3:38373713-38373732 | None:intergenic | 45.0% | |
| ACACAATTTACGTCTCAGGC+TGG | - | chr4_3:38373744-38373763 | Msa0640230:intron | 45.0% | |
| AAGATCAGGACCAGGTTCAT+TGG | + | chr4_3:38373795-38373814 | None:intergenic | 45.0% | |
| TAATCAGCAAGATCAGGACC+AGG | + | chr4_3:38373803-38373822 | None:intergenic | 45.0% | |
| GTGACCGCATTTCTTAGTCA+CGG | + | chr4_3:38374074-38374093 | None:intergenic | 45.0% | |
| GACTAAGAAATGCGGTCACA+TGG | - | chr4_3:38374075-38374094 | Msa0640230:CDS | 45.0% | |
| AACCGCAACCAAAACTTTCC+CGG | + | chr4_3:38374101-38374120 | None:intergenic | 45.0% | |
| GAGTCTGAAGGGAAAGAGTT+TGG | - | chr4_3:38374279-38374298 | Msa0640230:CDS | 45.0% | |
| TTGGCAACAGTTATGGCACA+AGG | - | chr4_3:38374298-38374317 | Msa0640230:CDS | 45.0% | |
| ! | ATGGCACAAGGATTTGCTTC+TGG | - | chr4_3:38374310-38374329 | Msa0640230:CDS | 45.0% |
| ! | GGATTTGCTTCTGGAAAGAG+TGG | - | chr4_3:38374319-38374338 | Msa0640230:CDS | 45.0% |
| AAAGAGTGGAGCTGAACTTC+AGG | - | chr4_3:38374333-38374352 | Msa0640230:CDS | 45.0% | |
| TGCGCAGTTGAAGACTTTCT+CGG | - | chr4_3:38374381-38374400 | Msa0640230:CDS | 45.0% | |
| GTTGAAGACTTTCTCGGAAG+CGG | - | chr4_3:38374387-38374406 | Msa0640230:CDS | 45.0% | |
| GACTTGCCTAGAACTAGAGA+AGG | - | chr4_3:38374568-38374587 | Msa0640230:CDS | 45.0% | |
| ATCCAGATAAGATCAGCGTG+TGG | + | chr4_3:38374652-38374671 | None:intergenic | 45.0% | |
| ACACGCTGATCTTATCTGGA+TGG | - | chr4_3:38374651-38374670 | Msa0640230:CDS | 45.0% | |
| GGAAACAGCAAGTCCAAATG+TGG | - | chr4_3:38374672-38374691 | Msa0640230:CDS | 45.0% | |
| TGTGTGCACTCAACCACATT+TGG | + | chr4_3:38374688-38374707 | None:intergenic | 45.0% | |
| !! | AGTGCACACAGTTTGCTGAA+GGG | - | chr4_3:38374698-38374717 | Msa0640230:CDS | 45.0% |
| TACCCTAACTGAGCGATCTT+AGG | + | chr4_3:38374826-38374845 | None:intergenic | 45.0% | |
| GTGTGGCAGTTCATAACTGT+TGG | - | chr4_3:38374847-38374866 | Msa0640230:CDS | 45.0% | |
| TGGCAGTTCATAACTGTTGG+AGG | - | chr4_3:38374850-38374869 | Msa0640230:CDS | 45.0% | |
| ! | GCTAGGGATTTTGCTAACAG+GGG | - | chr4_3:38374907-38374926 | Msa0640230:CDS | 45.0% |
| CCGATCATAGTAATTCGCAC+CGG | + | chr4_3:38375010-38375029 | None:intergenic | 45.0% | |
| CCGGTGCGAATTACTATGAT+CGG | - | chr4_3:38375007-38375026 | Msa0640230:CDS | 45.0% | |
| TCGGTACCTCAAAACTATCC+AGG | - | chr4_3:38375026-38375045 | Msa0640230:CDS | 45.0% | |
| CGGTACCTCAAAACTATCCA+GGG | - | chr4_3:38375027-38375046 | Msa0640230:CDS | 45.0% | |
| TACCTCAAAACTATCCAGGG+TGG | - | chr4_3:38375030-38375049 | Msa0640230:CDS | 45.0% | |
| ! | CTTACCTTTTCCCATTGCAG+CGG | + | chr4_3:38375067-38375086 | None:intergenic | 45.0% |
| AGATCTGACCCGTAACATCA+AGG | + | chr4_3:38375233-38375252 | None:intergenic | 45.0% | |
| !! | GCGGGCATTGATAGAGATAA+TGG | - | chr4_3:38375401-38375420 | Msa0640230:CDS | 45.0% |
| ! | TAGAGATAATGGCAGCATGG+TGG | - | chr4_3:38375412-38375431 | Msa0640230:CDS | 45.0% |
| !! | AACATTCGGTGCACTTGATC+CGG | - | chr4_3:38373691-38373710 | Msa0640230:intron | 45.0% |
| TCCGGTTCAAGTCACTCAAA+TGG | - | chr4_3:38373709-38373728 | Msa0640230:intron | 45.0% | |
| GCCATTTGAGTGACTTGAAC+CGG | + | chr4_3:38373713-38373732 | None:intergenic | 45.0% | |
| ACACAATTTACGTCTCAGGC+TGG | - | chr4_3:38373744-38373763 | Msa0640230:intron | 45.0% | |
| AAGATCAGGACCAGGTTCAT+TGG | + | chr4_3:38373795-38373814 | None:intergenic | 45.0% | |
| TAATCAGCAAGATCAGGACC+AGG | + | chr4_3:38373803-38373822 | None:intergenic | 45.0% | |
| GTGACCGCATTTCTTAGTCA+CGG | + | chr4_3:38374074-38374093 | None:intergenic | 45.0% | |
| GACTAAGAAATGCGGTCACA+TGG | - | chr4_3:38374075-38374094 | Msa0640230:CDS | 45.0% | |
| AACCGCAACCAAAACTTTCC+CGG | + | chr4_3:38374101-38374120 | None:intergenic | 45.0% | |
| GAGTCTGAAGGGAAAGAGTT+TGG | - | chr4_3:38374279-38374298 | Msa0640230:CDS | 45.0% | |
| TTGGCAACAGTTATGGCACA+AGG | - | chr4_3:38374298-38374317 | Msa0640230:CDS | 45.0% | |
| ! | ATGGCACAAGGATTTGCTTC+TGG | - | chr4_3:38374310-38374329 | Msa0640230:CDS | 45.0% |
| ! | GGATTTGCTTCTGGAAAGAG+TGG | - | chr4_3:38374319-38374338 | Msa0640230:CDS | 45.0% |
| AAAGAGTGGAGCTGAACTTC+AGG | - | chr4_3:38374333-38374352 | Msa0640230:CDS | 45.0% | |
| TGCGCAGTTGAAGACTTTCT+CGG | - | chr4_3:38374381-38374400 | Msa0640230:CDS | 45.0% | |
| GTTGAAGACTTTCTCGGAAG+CGG | - | chr4_3:38374387-38374406 | Msa0640230:CDS | 45.0% | |
| GACTTGCCTAGAACTAGAGA+AGG | - | chr4_3:38374568-38374587 | Msa0640230:CDS | 45.0% | |
| ATCCAGATAAGATCAGCGTG+TGG | + | chr4_3:38374652-38374671 | None:intergenic | 45.0% | |
| ACACGCTGATCTTATCTGGA+TGG | - | chr4_3:38374651-38374670 | Msa0640230:CDS | 45.0% | |
| GGAAACAGCAAGTCCAAATG+TGG | - | chr4_3:38374672-38374691 | Msa0640230:CDS | 45.0% | |
| TGTGTGCACTCAACCACATT+TGG | + | chr4_3:38374688-38374707 | None:intergenic | 45.0% | |
| !! | AGTGCACACAGTTTGCTGAA+GGG | - | chr4_3:38374698-38374717 | Msa0640230:CDS | 45.0% |
| TACCCTAACTGAGCGATCTT+AGG | + | chr4_3:38374826-38374845 | None:intergenic | 45.0% | |
| GTGTGGCAGTTCATAACTGT+TGG | - | chr4_3:38374847-38374866 | Msa0640230:CDS | 45.0% | |
| TGGCAGTTCATAACTGTTGG+AGG | - | chr4_3:38374850-38374869 | Msa0640230:CDS | 45.0% | |
| ! | GCTAGGGATTTTGCTAACAG+GGG | - | chr4_3:38374907-38374926 | Msa0640230:CDS | 45.0% |
| CCGATCATAGTAATTCGCAC+CGG | + | chr4_3:38375010-38375029 | None:intergenic | 45.0% | |
| CCGGTGCGAATTACTATGAT+CGG | - | chr4_3:38375007-38375026 | Msa0640230:CDS | 45.0% | |
| TCGGTACCTCAAAACTATCC+AGG | - | chr4_3:38375026-38375045 | Msa0640230:CDS | 45.0% | |
| CGGTACCTCAAAACTATCCA+GGG | - | chr4_3:38375027-38375046 | Msa0640230:CDS | 45.0% | |
| TACCTCAAAACTATCCAGGG+TGG | - | chr4_3:38375030-38375049 | Msa0640230:CDS | 45.0% | |
| ! | CTTACCTTTTCCCATTGCAG+CGG | + | chr4_3:38375067-38375086 | None:intergenic | 45.0% |
| AGATCTGACCCGTAACATCA+AGG | + | chr4_3:38375233-38375252 | None:intergenic | 45.0% | |
| !! | GCGGGCATTGATAGAGATAA+TGG | - | chr4_3:38375401-38375420 | Msa0640230:CDS | 45.0% |
| ! | TAGAGATAATGGCAGCATGG+TGG | - | chr4_3:38375412-38375431 | Msa0640230:CDS | 45.0% |
| ! | AAGCATGGTGGAACACTGAG+AGG | - | chr4_3:38373525-38373544 | Msa0640230:CDS | 50.0% |
| AGAACCGCGTCGAGAACATT+CGG | - | chr4_3:38373677-38373696 | Msa0640230:intron | 50.0% | |
| CACACAACCACCAATGAACC+TGG | - | chr4_3:38373782-38373801 | Msa0640230:intron | 50.0% | |
| ATCAGGACCAGGTTCATTGG+TGG | + | chr4_3:38373792-38373811 | None:intergenic | 50.0% | |
| TTGTTCGGGACAGTGTCGTA+AGG | + | chr4_3:38373827-38373846 | None:intergenic | 50.0% | |
| GCGTTCTTGCTCGATCTTCT+CGG | + | chr4_3:38373919-38373938 | None:intergenic | 50.0% | |
| ! | GCTGATGGTGACACTGGATT+CGG | - | chr4_3:38373968-38373987 | Msa0640230:CDS | 50.0% |
| TGCTGCTGGGATTCACATTG+AGG | - | chr4_3:38374039-38374058 | Msa0640230:CDS | 50.0% | |
| AAGAAATGCGGTCACATGGC+CGG | - | chr4_3:38374079-38374098 | Msa0640230:CDS | 50.0% | |
| ! | TCACATGGCCGGGAAAGTTT+TGG | - | chr4_3:38374090-38374109 | Msa0640230:CDS | 50.0% |
| GTGACGAATCCGAGTCTGAA+GGG | - | chr4_3:38374268-38374287 | Msa0640230:CDS | 50.0% | |
| TGGAGCTGAACTTCAGGCAT+TGG | - | chr4_3:38374339-38374358 | Msa0640230:CDS | 50.0% | |
| !! | AGCTGAACTTCAGGCATTGG+AGG | - | chr4_3:38374342-38374361 | Msa0640230:CDS | 50.0% |
| !! | TTCAGGCATTGGAGGATCAG+TGG | - | chr4_3:38374350-38374369 | Msa0640230:CDS | 50.0% |
| ACGAGGATGAGAAAAGGAGG+AGG | - | chr4_3:38374440-38374459 | Msa0640230:CDS | 50.0% | |
| AAAGGAGGAGGTTGAACGAG+TGG | - | chr4_3:38374452-38374471 | Msa0640230:CDS | 50.0% | |
| GCAAGTCCCAATCCCAAAAG+AGG | + | chr4_3:38374555-38374574 | None:intergenic | 50.0% | |
| ACAACCACGAACAATAGCCG+CGG | + | chr4_3:38374620-38374639 | None:intergenic | 50.0% | |
| CACCACACGCTGATCTTATC+TGG | - | chr4_3:38374647-38374666 | Msa0640230:CDS | 50.0% | |
| !! | GAGTGCACACAGTTTGCTGA+AGG | - | chr4_3:38374697-38374716 | Msa0640230:CDS | 50.0% |
| TCGCTCAGTTAGGGTATGTG+TGG | - | chr4_3:38374830-38374849 | Msa0640230:CDS | 50.0% | |
| CTTGCTCATCAGAAATGGGC+CGG | - | chr4_3:38374988-38375007 | Msa0640230:CDS | 50.0% | |
| !! | CACCACCCTGGATAGTTTTG+AGG | + | chr4_3:38375035-38375054 | None:intergenic | 50.0% |
| TCAACCGCTGCAATGGGAAA+AGG | - | chr4_3:38375060-38375079 | Msa0640230:CDS | 50.0% | |
| !! | AAGGAAACATGGACTAGGCC+AGG | - | chr4_3:38375374-38375393 | Msa0640230:CDS | 50.0% |
| ! | AAGCATGGTGGAACACTGAG+AGG | - | chr4_3:38373525-38373544 | Msa0640230:CDS | 50.0% |
| AGAACCGCGTCGAGAACATT+CGG | - | chr4_3:38373677-38373696 | Msa0640230:intron | 50.0% | |
| CACACAACCACCAATGAACC+TGG | - | chr4_3:38373782-38373801 | Msa0640230:intron | 50.0% | |
| ATCAGGACCAGGTTCATTGG+TGG | + | chr4_3:38373792-38373811 | None:intergenic | 50.0% | |
| TTGTTCGGGACAGTGTCGTA+AGG | + | chr4_3:38373827-38373846 | None:intergenic | 50.0% | |
| GCGTTCTTGCTCGATCTTCT+CGG | + | chr4_3:38373919-38373938 | None:intergenic | 50.0% | |
| ! | GCTGATGGTGACACTGGATT+CGG | - | chr4_3:38373968-38373987 | Msa0640230:CDS | 50.0% |
| TGCTGCTGGGATTCACATTG+AGG | - | chr4_3:38374039-38374058 | Msa0640230:CDS | 50.0% | |
| AAGAAATGCGGTCACATGGC+CGG | - | chr4_3:38374079-38374098 | Msa0640230:CDS | 50.0% | |
| ! | TCACATGGCCGGGAAAGTTT+TGG | - | chr4_3:38374090-38374109 | Msa0640230:CDS | 50.0% |
| GTGACGAATCCGAGTCTGAA+GGG | - | chr4_3:38374268-38374287 | Msa0640230:CDS | 50.0% | |
| TGGAGCTGAACTTCAGGCAT+TGG | - | chr4_3:38374339-38374358 | Msa0640230:CDS | 50.0% | |
| !! | AGCTGAACTTCAGGCATTGG+AGG | - | chr4_3:38374342-38374361 | Msa0640230:CDS | 50.0% |
| !! | TTCAGGCATTGGAGGATCAG+TGG | - | chr4_3:38374350-38374369 | Msa0640230:CDS | 50.0% |
| ACGAGGATGAGAAAAGGAGG+AGG | - | chr4_3:38374440-38374459 | Msa0640230:CDS | 50.0% | |
| AAAGGAGGAGGTTGAACGAG+TGG | - | chr4_3:38374452-38374471 | Msa0640230:CDS | 50.0% | |
| GCAAGTCCCAATCCCAAAAG+AGG | + | chr4_3:38374555-38374574 | None:intergenic | 50.0% | |
| ACAACCACGAACAATAGCCG+CGG | + | chr4_3:38374620-38374639 | None:intergenic | 50.0% | |
| CACCACACGCTGATCTTATC+TGG | - | chr4_3:38374647-38374666 | Msa0640230:CDS | 50.0% | |
| !! | GAGTGCACACAGTTTGCTGA+AGG | - | chr4_3:38374697-38374716 | Msa0640230:CDS | 50.0% |
| TCGCTCAGTTAGGGTATGTG+TGG | - | chr4_3:38374830-38374849 | Msa0640230:CDS | 50.0% | |
| CTTGCTCATCAGAAATGGGC+CGG | - | chr4_3:38374988-38375007 | Msa0640230:CDS | 50.0% | |
| !! | CACCACCCTGGATAGTTTTG+AGG | + | chr4_3:38375035-38375054 | None:intergenic | 50.0% |
| TCAACCGCTGCAATGGGAAA+AGG | - | chr4_3:38375060-38375079 | Msa0640230:CDS | 50.0% | |
| !! | AAGGAAACATGGACTAGGCC+AGG | - | chr4_3:38375374-38375393 | Msa0640230:CDS | 50.0% |
| GGCTACTTCGGACTCGAATC+TGG | + | chr4_3:38373498-38373517 | None:intergenic | 55.0% | |
| ATTCGAGTCCGAAGTAGCCG+AGG | - | chr4_3:38373499-38373518 | Msa0640230:CDS | 55.0% | |
| TGCTTGCACCTCGGCTACTT+CGG | + | chr4_3:38373510-38373529 | None:intergenic | 55.0% | |
| AAGTAGCCGAGGTGCAAGCA+TGG | - | chr4_3:38373510-38373529 | Msa0640230:CDS | 55.0% | |
| GTTCCACCATGCTTGCACCT+CGG | + | chr4_3:38373519-38373538 | None:intergenic | 55.0% | |
| TGTTCTCGACGCGGTTCTGT+TGG | + | chr4_3:38373675-38373694 | None:intergenic | 55.0% | |
| TGCACCGAATGTTCTCGACG+CGG | + | chr4_3:38373684-38373703 | None:intergenic | 55.0% | |
| GATGGTGACACTGGATTCGG+TGG | - | chr4_3:38373971-38373990 | Msa0640230:CDS | 55.0% | |
| !! | TTTGTCGAACGTGGTGCTGC+TGG | - | chr4_3:38374025-38374044 | Msa0640230:CDS | 55.0% |
| !! | TTGTCGAACGTGGTGCTGCT+GGG | - | chr4_3:38374026-38374045 | Msa0640230:CDS | 55.0% |
| AGAAATGCGGTCACATGGCC+GGG | - | chr4_3:38374080-38374099 | Msa0640230:CDS | 55.0% | |
| !!! | GGCCGGGAAAGTTTTGGTTG+CGG | - | chr4_3:38374096-38374115 | Msa0640230:CDS | 55.0% |
| CGTGACGAATCCGAGTCTGA+AGG | - | chr4_3:38374267-38374286 | Msa0640230:CDS | 55.0% | |
| GTTACCGCGGCTATTGTTCG+TGG | - | chr4_3:38374613-38374632 | Msa0640230:CDS | 55.0% | |
| TGTTGCGTCAACCGCTGCAA+TGG | - | chr4_3:38375053-38375072 | Msa0640230:CDS | 55.0% | |
| GTTGCGTCAACCGCTGCAAT+GGG | - | chr4_3:38375054-38375073 | Msa0640230:CDS | 55.0% | |
| !! | ATGGACTAGGCCAGGAACAG+CGG | - | chr4_3:38375382-38375401 | Msa0640230:CDS | 55.0% |
| CTATCAATGCCCGCTGTTCC+TGG | + | chr4_3:38375395-38375414 | None:intergenic | 55.0% | |
| TGGCAGCATGGTGGTTGCTA+AGG | - | chr4_3:38375421-38375440 | Msa0640230:CDS | 55.0% | |
| GGCTACTTCGGACTCGAATC+TGG | + | chr4_3:38373498-38373517 | None:intergenic | 55.0% | |
| ATTCGAGTCCGAAGTAGCCG+AGG | - | chr4_3:38373499-38373518 | Msa0640230:CDS | 55.0% | |
| TGCTTGCACCTCGGCTACTT+CGG | + | chr4_3:38373510-38373529 | None:intergenic | 55.0% | |
| AAGTAGCCGAGGTGCAAGCA+TGG | - | chr4_3:38373510-38373529 | Msa0640230:CDS | 55.0% | |
| GTTCCACCATGCTTGCACCT+CGG | + | chr4_3:38373519-38373538 | None:intergenic | 55.0% | |
| TGTTCTCGACGCGGTTCTGT+TGG | + | chr4_3:38373675-38373694 | None:intergenic | 55.0% | |
| TGCACCGAATGTTCTCGACG+CGG | + | chr4_3:38373684-38373703 | None:intergenic | 55.0% | |
| GATGGTGACACTGGATTCGG+TGG | - | chr4_3:38373971-38373990 | Msa0640230:CDS | 55.0% | |
| !! | TTTGTCGAACGTGGTGCTGC+TGG | - | chr4_3:38374025-38374044 | Msa0640230:CDS | 55.0% |
| !! | TTGTCGAACGTGGTGCTGCT+GGG | - | chr4_3:38374026-38374045 | Msa0640230:CDS | 55.0% |
| AGAAATGCGGTCACATGGCC+GGG | - | chr4_3:38374080-38374099 | Msa0640230:CDS | 55.0% | |
| !!! | GGCCGGGAAAGTTTTGGTTG+CGG | - | chr4_3:38374096-38374115 | Msa0640230:CDS | 55.0% |
| CGTGACGAATCCGAGTCTGA+AGG | - | chr4_3:38374267-38374286 | Msa0640230:CDS | 55.0% | |
| GTTACCGCGGCTATTGTTCG+TGG | - | chr4_3:38374613-38374632 | Msa0640230:CDS | 55.0% | |
| TGTTGCGTCAACCGCTGCAA+TGG | - | chr4_3:38375053-38375072 | Msa0640230:CDS | 55.0% | |
| GTTGCGTCAACCGCTGCAAT+GGG | - | chr4_3:38375054-38375073 | Msa0640230:CDS | 55.0% | |
| !! | ATGGACTAGGCCAGGAACAG+CGG | - | chr4_3:38375382-38375401 | Msa0640230:CDS | 55.0% |
| CTATCAATGCCCGCTGTTCC+TGG | + | chr4_3:38375395-38375414 | None:intergenic | 55.0% | |
| TGGCAGCATGGTGGTTGCTA+AGG | - | chr4_3:38375421-38375440 | Msa0640230:CDS | 55.0% | |
| TAGCCGAGGTGCAAGCATGG+TGG | - | chr4_3:38373513-38373532 | Msa0640230:CDS | 60.0% | |
| !! | CGCGGTTCTGTTGGCTTGGT+GGG | + | chr4_3:38373666-38373685 | None:intergenic | 60.0% |
| !! | ACGCGGTTCTGTTGGCTTGG+TGG | + | chr4_3:38373667-38373686 | None:intergenic | 60.0% |
| ! | TCGACGCGGTTCTGTTGGCT+TGG | + | chr4_3:38373670-38373689 | None:intergenic | 60.0% |
| ! | TGGACTAGGCCAGGAACAGC+GGG | - | chr4_3:38375383-38375402 | Msa0640230:CDS | 60.0% |
| TAGCCGAGGTGCAAGCATGG+TGG | - | chr4_3:38373513-38373532 | Msa0640230:CDS | 60.0% | |
| !! | CGCGGTTCTGTTGGCTTGGT+GGG | + | chr4_3:38373666-38373685 | None:intergenic | 60.0% |
| !! | ACGCGGTTCTGTTGGCTTGG+TGG | + | chr4_3:38373667-38373686 | None:intergenic | 60.0% |
| ! | TCGACGCGGTTCTGTTGGCT+TGG | + | chr4_3:38373670-38373689 | None:intergenic | 60.0% |
| ! | TGGACTAGGCCAGGAACAGC+GGG | - | chr4_3:38375383-38375402 | Msa0640230:CDS | 60.0% |
| CGGTTGACGCAACACCACCC+TGG | + | chr4_3:38375047-38375066 | None:intergenic | 65.0% | |
| CGGTTGACGCAACACCACCC+TGG | + | chr4_3:38375047-38375066 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 38373482 | 38375454 | 38373482 | ID=Msa0640230;Name=Msa0640230 |
| chr4_3 | mRNA | 38373482 | 38375454 | 38373482 | ID=Msa0640230-mRNA-1;Parent=Msa0640230;Name=Msa0640230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|566 |
| chr4_3 | exon | 38373855 | 38375454 | 38373855 | ID=Msa0640230-mRNA-1:exon:8672;Parent=Msa0640230-mRNA-1 |
| chr4_3 | exon | 38373482 | 38373582 | 38373482 | ID=Msa0640230-mRNA-1:exon:8671;Parent=Msa0640230-mRNA-1 |
| chr4_3 | CDS | 38373855 | 38375454 | 38373855 | ID=Msa0640230-mRNA-1:cds;Parent=Msa0640230-mRNA-1 |
| chr4_3 | CDS | 38373482 | 38373582 | 38373482 | ID=Msa0640230-mRNA-1:cds;Parent=Msa0640230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
