AlfalfaGEDB | Msa0545550

M. sativa cultivar zhongmu-4 / Msa0545550

KEGG: K14007
GO: -
PFAM: PF04811.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545550	XP_013455821.1	98.792	745	9	0	1	745	1	745	0.0	1517

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545550	sp\|Q1E6U9\|SEC24_COCIM	22.349	613	371	21	3	585	206	743	6.97e-22	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545550	A0A072UJN9	98.792	745	9	0	1	745	1	745	0.0	1517

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0169960	Msa0545550	-0.804757	1.853180e-49	-8.615850e-47
Msa0545550	Msa0656060	0.916585	1.492401e-85	-8.615850e-47
Msa0545550	Msa0812330	0.822497	2.294978e-53	-8.615850e-47
Msa0545550	Msa0899500	0.808345	3.242360e-50	-8.615850e-47
Msa0545550	Msa0999270	0.803904	2.790361e-49	-8.615850e-47
Msa0545550	Msa1360380	-0.800938	1.139346e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545550	MtrunA17_Chr4g0026291	98.792	745	9	0	1	745	1	745	0.0	1517
Msa0545550	MtrunA17_Chr7g0271481	22.798	579	354	22	3	554	303	815	3.29e-21	99.4
Msa0545550	MtrunA17_Chr1g0210851	23.543	429	260	14	3	401	396	786	9.14e-16	82.0
Msa0545550	MtrunA17_Chr8g0338351	22.205	662	413	25	52	663	57	666	1.26e-14	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545550	AT2G27460.1	78.743	748	153	4	1	745	1	745	0.0	1204
Msa0545550	AT3G07100.1	22.688	573	362	20	3	554	321	833	9.98e-23	104
Msa0545550	AT2G21630.1	22.633	676	410	26	45	663	48	667	6.42e-14	76.3
Msa0545550	AT4G32640.2	22.685	432	260	15	3	401	379	769	6.44e-13	73.2
Msa0545550	AT4G32640.1	22.685	432	260	15	3	401	379	769	6.44e-13	73.2

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Find 206 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTACAACAAAGGGGAG+GGG	0.584927	4_1:-35952250	None:intergenic
AAACTTGTTCAGTATAGCAA+TGG	0.522079	4_1:+35950989	Msa0545550:CDS
AAAGTACAACAAAGGGGAGG+GGG	0.473481	4_1:-35952249	None:intergenic
AAATCCTTCCTCTCACAAAA+TGG	0.338303	4_1:-35952186	None:intergenic
AAATTGAGTGAGTCAAGCAC+CGG	0.620533	4_1:+35943716	Msa0545550:five_prime_UTR
AAATTTCTGAGTATTGAAAG+TGG	0.602100	4_1:+35946887	Msa0545550:CDS
AACAAATGAGTACACTGATT+TGG	0.387569	4_1:+35946856	Msa0545550:CDS
AACAACCAATCACCGGCATA+CGG	0.516528	4_1:+35943933	Msa0545550:CDS
AACCCTTTCTTCTGTATGTA+TGG	0.352187	4_1:+35952352	Msa0545550:three_prime_UTR
AACTTCATGGGAGAGAACTC+CGG	0.501996	4_1:+35946341	Msa0545550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGATCATTGTGATGATAAT+AGG	+	chr4_1:35944359-35944378	Msa0545550:intron	30.0%
CAGTAAACAAACAAAACAAG+TGG	-	chr4_1:35944616-35944635	None:intergenic	30.0%
TTAAAATTTACAGGCCCATT+AGG	-	chr4_1:35945210-35945229	None:intergenic	30.0%
TATGGTGATTTGAATTTGTG+TGG	+	chr4_1:35945303-35945322	Msa0545550:intron	30.0%
TCAAACCAAATGACGTTTAA+TGG	+	chr4_1:35945439-35945458	Msa0545550:intron	30.0%
ATAAAAGACAAAGAAAGCCT+AGG	+	chr4_1:35945475-35945494	Msa0545550:intron	30.0%
TAATCTGATAAACATTGCCT+AGG	-	chr4_1:35945495-35945514	None:intergenic	30.0%
GTTTCAATAAGACCAAGAAT+AGG	-	chr4_1:35945639-35945658	None:intergenic	30.0%
ATAAAAGGATGCAATCTTCA+AGG	+	chr4_1:35945662-35945681	Msa0545550:intron	30.0%
AAATGATGTCCAGCATATTT+AGG	-	chr4_1:35945792-35945811	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	35943698	35952496	35943698	ID=Msa0545550;Name=Msa0545550
chr4_1	mRNA	35943698	35952496	35943698	ID=Msa0545550-mRNA-1;Parent=Msa0545550;Name=Msa0545550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=127\|1\|1\|1\|0.92\|0.86\|15\|365\|745
chr4_1	exon	35943698	35944155	35943698	ID=Msa0545550-mRNA-1:exon:9100;Parent=Msa0545550-mRNA-1
chr4_1	exon	35944248	35944316	35944248	ID=Msa0545550-mRNA-1:exon:9101;Parent=Msa0545550-mRNA-1
chr4_1	exon	35945865	35945918	35945865	ID=Msa0545550-mRNA-1:exon:9102;Parent=Msa0545550-mRNA-1
chr4_1	exon	35946004	35946170	35946004	ID=Msa0545550-mRNA-1:exon:9103;Parent=Msa0545550-mRNA-1
chr4_1	exon	35946288	35946474	35946288	ID=Msa0545550-mRNA-1:exon:9104;Parent=Msa0545550-mRNA-1
chr4_1	exon	35946589	35946734	35946589	ID=Msa0545550-mRNA-1:exon:9105;Parent=Msa0545550-mRNA-1
chr4_1	exon	35946809	35946963	35946809	ID=Msa0545550-mRNA-1:exon:9106;Parent=Msa0545550-mRNA-1
chr4_1	exon	35947818	35947899	35947818	ID=Msa0545550-mRNA-1:exon:9107;Parent=Msa0545550-mRNA-1
chr4_1	exon	35947986	35948101	35947986	ID=Msa0545550-mRNA-1:exon:9108;Parent=Msa0545550-mRNA-1
chr4_1	exon	35948995	35949093	35948995	ID=Msa0545550-mRNA-1:exon:9109;Parent=Msa0545550-mRNA-1
chr4_1	exon	35950503	35950629	35950503	ID=Msa0545550-mRNA-1:exon:9110;Parent=Msa0545550-mRNA-1
chr4_1	exon	35950893	35951170	35950893	ID=Msa0545550-mRNA-1:exon:9111;Parent=Msa0545550-mRNA-1
chr4_1	exon	35951582	35951796	35951582	ID=Msa0545550-mRNA-1:exon:9112;Parent=Msa0545550-mRNA-1
chr4_1	exon	35951900	35952387	35951900	ID=Msa0545550-mRNA-1:exon:9113;Parent=Msa0545550-mRNA-1
chr4_1	exon	35952408	35952496	35952408	ID=Msa0545550-mRNA-1:exon:9114;Parent=Msa0545550-mRNA-1
chr4_1	five_prime_UTR	35943698	35943824	35943698	ID=Msa0545550-mRNA-1:five_prime_utr;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35943825	35944155	35943825	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35944248	35944316	35944248	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35945865	35945918	35945865	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35946004	35946170	35946004	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35946288	35946474	35946288	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35946589	35946734	35946589	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35946809	35946963	35946809	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35947818	35947899	35947818	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35947986	35948101	35947986	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35948995	35949093	35948995	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35950503	35950629	35950503	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35950893	35951170	35950893	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35951582	35951796	35951582	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	CDS	35951900	35952111	35951900	ID=Msa0545550-mRNA-1:cds;Parent=Msa0545550-mRNA-1
chr4_1	three_prime_UTR	35952112	35952387	35952112	ID=Msa0545550-mRNA-1:three_prime_utr;Parent=Msa0545550-mRNA-1
chr4_1	three_prime_UTR	35952408	35952496	35952408	ID=Msa0545550-mRNA-1:three_prime_utr;Parent=Msa0545550-mRNA-1

Gene Sequence

>Msa0545550

ATGGCGGTGAGAGCCACAGTCTCCCGCTTCCCATCGGACACCGACGCACGCGAAGTTTCCGGCCTATTATGGGGAGTAACCGTCGCCCCCTTCGCCGCCGTCGACGAAAACAACCAATCACCGGCATACGGATCCAGCGGCGAGCTTTTACCCCGGTGCGAGAATTGCTGGGCGTACTTCAACACCTACTGTGAACTCGAACAATGGTCGTGGGGTTGTTCTCTCTGCGGGAATCTCAATGGTCTTTCTTCTGAAGCTATTGAGCGGTATTCTCGTCCGCAATCTTGTGCTGAAATGATGTCTTCGTTTGTAGATCTTGAATTGCCGCAGGAAGAAGAGTCGTCTGGTGATGCTGCATTGCAAGCTTGTCCTGTTTATGTTGCGGCGGTTGACTTATCATCTTCCGAGGAGTTTCTGGAACTCACTAAAAGTGCATTGCTGGCAGCTTTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCATAAACTAGGACTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTCATCCCTCCAGAGGGAACCTTATCAACTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCCGTGGACACTTGTAAGGACCGTATTGCATCTGCACTCGAAACACTTAGACCAACAACTTCATGGGAGAGAACTCCGGGAGCAGGTCAAGGAATGGATGGTGTTCTGCTAGGTGGGCGCGGTTTTGGGGCGGCAATGGAATCTCTCTGTAGTTATCTTGGATCTGAATATGGGAGCACTTTTGCATTAGCTAGAGTCTTTGCATTCTTGTCTGGTCCTCCTGATTATGGAGCTGGACAATTGGACACAAGGCGATATGGTGAGCAATATGCCAGCAAAAGGGAGGATGCAGATCGTGCTTTACTCCCGGAGCAGACACCATTTTATAAAGATCTGGCAGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGCTCCTTATTTTTTTATACAAGTACCGAGGATTCAACTTTGCCTCAGGACATGTATCGAATGCTGAGTAGGCCATATGCTTTTAGTTGTGTCCTGCGATTAAGAACCTCAACTGAATTTAAGCCTGGAAATTCGTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACGTCATATGCTGTGATTCTTATGCTACATATGCTTATGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAGAAGTAAATCAGATGTTCCTACACTCCAGATTGCATTTCAGTACTCAGTTGTAGTTCCTCCTCAGGAGCTTTCCAATTCAGGAGGGGTCTCTACAAGCAGAACCAAGCATCATTCCCTTCAGCGGCGGCTAAGGATCCGAACAGTGCAGTTTGGCGTTGCTCAGAACATCAACGAACTTTACGACAGCTGTGATCCGGAAGTTGTTCTATCTTTGCTCGTGCACAAGGTTATACTTGCCTCTTTGGAGGAAGGAGTTCGAGAGGGTAGACTTTTGCTTCAAGAATGGCTAGTGATCCTTGTAGCTCAGTACAATGATGCTTATAAACTTGTTCAGTATAGCAATGGAAATTCAATAAGATCTCAGATTGATGTTGCCTTCTCTCAATGTCCTCAACTGCAGCCGCTACCGCGCCTAATCTTTGCTCTCCTTCGAAACCCTCTTCTTCGCTTTCACGAAGAAGGTGTTCATCCTGATTATCGCATCTATCTTCAATGTCTGTTTAGTGCGTTGGAACCGAGTTCCCTTCATCGTGCTGTGTATCCAGTATTGACATCATATGCCACTCCAGACAAACAAGCATATCCTCGCCATTCCTTGAGTCGTGCTGCATTGCTTACCAGTGGCAGTCCAATATTTTTCCTGGATGCATTCACAATTCTGATTGTGTTTTATTCTTCAACTGCGGACCCAACACTTCCTTTTCCGCCACCCCACGATTGTTTGTTAAGGACTACAATCAACAAATTGAAGAAAGAGAGATGCATCACTCCTAAACTCATTTTTATTCAAGGAGGGCAGGATGATGCCTCAATTTTCGAGAACTTTCTGATTGAAGAGCAGGACGTTGATGGAAGCGGTCTTACAAGTGTGATGGGTTTTGTTTCCTTCCTTGAAGATATAACTGTGAAAGTTTTAGAATTCATAAAATAG

Protein sequence

>Msa0545550

MAVRATVSRFPSDTDAREVSGLLWGVTVAPFAAVDENNQSPAYGSSGELLPRCENCWAYFNTYCELEQWSWGCSLCGNLNGLSSEAIERYSRPQSCAEMMSSFVDLELPQEEESSGDAALQACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPPEGTLSTELEDVMPLLQFLAPVDTCKDRIASALETLRPTTSWERTPGAGQGMDGVLLGGRGFGAAMESLCSYLGSEYGSTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKREDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFFYTSTEDSTLPQDMYRMLSRPYAFSCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHVICCDSYATYAYDFVFENNVGFSRSKSDVPTLQIAFQYSVVVPPQELSNSGGVSTSRTKHHSLQRRLRIRTVQFGVAQNINELYDSCDPEVVLSLLVHKVILASLEEGVREGRLLLQEWLVILVAQYNDAYKLVQYSNGNSIRSQIDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLHRAVYPVLTSYATPDKQAYPRHSLSRAALLTSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRTTINKLKKERCITPKLIFIQGGQDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITVKVLEFIK*