Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0999270 | RHN52891.1 | 94.787 | 633 | 32 | 1 | 1 | 632 | 57 | 689 | 0.0 | 1219 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0999270 | A0A396HKA5 | 94.787 | 633 | 32 | 1 | 1 | 632 | 57 | 689 | 0.0 | 1219 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0999270 | Msa1131670 | 0.806545 | 7.809647e-50 | -8.615850e-47 |
Msa0999270 | Msa1207460 | 0.800284 | 1.549020e-48 | -8.615850e-47 |
Msa0999270 | Msa1262990 | 0.826532 | 2.576216e-54 | -8.615850e-47 |
Msa0999270 | Msa1308330 | 0.804273 | 2.338283e-49 | -8.615850e-47 |
Msa0999270 | Msa1317480 | 0.805120 | 1.555807e-49 | -8.615850e-47 |
Msa0279210 | Msa0999270 | 0.824888 | 6.324454e-54 | -8.615850e-47 |
Msa0279250 | Msa0999270 | 0.827131 | 1.853449e-54 | -8.615850e-47 |
Msa0318970 | Msa0999270 | 0.824869 | 6.389695e-54 | -8.615850e-47 |
Msa0545550 | Msa0999270 | 0.803904 | 2.790361e-49 | -8.615850e-47 |
Msa0899500 | Msa0999270 | 0.919414 | 4.640734e-87 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0999270 | MtrunA17_Chr6g0485461 | 94.787 | 633 | 32 | 1 | 1 | 632 | 57 | 689 | 0.0 | 1219 |
Msa0999270 | MtrunA17_Chr8g0390551 | 56.508 | 653 | 249 | 11 | 1 | 631 | 1 | 640 | 0.0 | 652 |
Msa0999270 | MtrunA17_Chr2g0331801 | 47.222 | 180 | 95 | 0 | 1 | 180 | 1 | 180 | 2.09e-51 | 183 |
Msa0999270 | MtrunA17_Chr4g0004491 | 52.299 | 174 | 82 | 1 | 1 | 174 | 4 | 176 | 2.50e-51 | 181 |
Msa0999270 | MtrunA17_Chr8g0370931 | 33.333 | 189 | 116 | 2 | 4 | 182 | 20 | 208 | 1.79e-29 | 121 |
Msa0999270 | MtrunA17_Chr6g0487991 | 32.418 | 182 | 113 | 2 | 5 | 176 | 1 | 182 | 1.02e-25 | 113 |
Msa0999270 | MtrunA17_Chr6g0464791 | 30.208 | 192 | 124 | 2 | 1 | 182 | 3 | 194 | 5.37e-24 | 106 |
Msa0999270 | MtrunA17_Chr1g0209771 | 29.208 | 202 | 126 | 3 | 1 | 192 | 3 | 197 | 1.07e-23 | 102 |
Msa0999270 | MtrunA17_Chr2g0324121 | 33.526 | 173 | 106 | 2 | 1 | 164 | 1 | 173 | 2.09e-23 | 104 |
Msa0999270 | MtrunA17_Chr7g0214961 | 28.000 | 175 | 117 | 2 | 4 | 169 | 2 | 176 | 2.15e-18 | 88.2 |
Msa0999270 | MtrunA17_Chr1g0210081 | 28.729 | 181 | 114 | 4 | 2 | 169 | 5 | 183 | 1.84e-15 | 78.6 |
Msa0999270 | MtrunA17_Chr4g0042021 | 25.143 | 175 | 119 | 2 | 12 | 176 | 9 | 181 | 9.14e-13 | 70.5 |
Msa0999270 | MtrunA17_Chr7g0262101 | 25.904 | 166 | 118 | 1 | 12 | 172 | 19 | 184 | 8.28e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0999270 | AT4G32350.1 | 59.459 | 185 | 75 | 0 | 1 | 185 | 1 | 185 | 3.04e-71 | 244 |
Msa0999270 | AT4G32350.1 | 33.333 | 306 | 160 | 9 | 330 | 631 | 466 | 731 | 7.49e-30 | 125 |
Msa0999270 | AT4G32350.3 | 59.459 | 185 | 75 | 0 | 1 | 185 | 1 | 185 | 3.04e-71 | 244 |
Msa0999270 | AT4G32350.3 | 33.333 | 306 | 160 | 9 | 330 | 631 | 466 | 731 | 7.49e-30 | 125 |
Msa0999270 | AT1G79910.1 | 54.444 | 180 | 82 | 0 | 1 | 180 | 1 | 180 | 4.79e-62 | 211 |
Msa0999270 | AT1G52315.1 | 42.458 | 179 | 98 | 2 | 10 | 185 | 10 | 186 | 3.12e-37 | 142 |
Msa0999270 | AT1G79910.3 | 52.459 | 122 | 58 | 0 | 59 | 180 | 4 | 125 | 1.03e-35 | 137 |
Msa0999270 | AT1G79910.2 | 52.066 | 121 | 58 | 0 | 60 | 180 | 46 | 166 | 1.39e-34 | 135 |
Msa0999270 | AT4G35730.1 | 34.921 | 189 | 113 | 2 | 4 | 182 | 20 | 208 | 1.06e-30 | 126 |
Msa0999270 | AT4G32350.2 | 53.608 | 97 | 45 | 0 | 89 | 185 | 1 | 97 | 3.93e-30 | 126 |
Msa0999270 | AT4G32350.2 | 33.333 | 306 | 160 | 9 | 330 | 631 | 378 | 643 | 1.28e-29 | 124 |
Msa0999270 | AT1G25420.1 | 32.642 | 193 | 120 | 2 | 1 | 183 | 3 | 195 | 1.26e-27 | 114 |
Msa0999270 | AT1G34220.2 | 32.642 | 193 | 120 | 2 | 1 | 183 | 3 | 195 | 1.29e-26 | 115 |
Msa0999270 | AT1G52315.2 | 39.669 | 121 | 68 | 2 | 68 | 185 | 18 | 136 | 2.11e-22 | 98.6 |
Msa0999270 | AT1G25420.4 | 30.952 | 168 | 107 | 1 | 25 | 183 | 1 | 168 | 6.56e-22 | 97.1 |
Msa0999270 | AT1G34220.1 | 28.700 | 223 | 119 | 3 | 1 | 183 | 3 | 225 | 8.61e-22 | 100 |
Msa0999270 | AT2G19710.1 | 25.275 | 182 | 126 | 2 | 5 | 176 | 4 | 185 | 3.40e-20 | 95.9 |
Msa0999270 | AT2G14830.1 | 32.086 | 187 | 116 | 2 | 1 | 177 | 1 | 186 | 4.82e-19 | 90.1 |
Msa0999270 | AT4G29440.1 | 24.176 | 182 | 128 | 2 | 5 | 176 | 4 | 185 | 5.47e-18 | 89.0 |
Msa0999270 | AT1G25420.3 | 31.496 | 127 | 78 | 1 | 66 | 183 | 1 | 127 | 3.80e-17 | 82.0 |
Msa0999270 | AT1G25420.2 | 31.496 | 127 | 78 | 1 | 66 | 183 | 1 | 127 | 3.80e-17 | 82.0 |
Msa0999270 | AT1G13340.1 | 28.090 | 178 | 118 | 2 | 2 | 169 | 5 | 182 | 3.35e-16 | 81.6 |
Msa0999270 | AT4G29440.2 | 23.490 | 149 | 105 | 1 | 37 | 176 | 9 | 157 | 8.26e-13 | 72.4 |
Find 155 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCCTCAGTTCAAAATCTT+TGG | 0.187180 | 6_4:+81067836 | None:intergenic |
CGACCTTCGGCAAATATTTC+AGG | 0.230293 | 6_4:-81068086 | Msa0999270:CDS |
AGCTTCAGCATCTTCTTTAT+TGG | 0.239165 | 6_4:+81066679 | None:intergenic |
GGATTGGATGTTAATGCTTA+TGG | 0.259710 | 6_4:-81070116 | Msa0999270:CDS |
GAGAAAGAATCCCCTGTTCT+TGG | 0.262807 | 6_4:-81066782 | Msa0999270:CDS |
AGAAAGATTAATGACTTAAA+TGG | 0.263511 | 6_4:+81070878 | None:intergenic |
CCAAGTGTGTGTAATTGTTT+AGG | 0.270453 | 6_4:-81065908 | Msa0999270:three_prime_UTR |
AAATCTAAGCTCCCTGAAAA+AGG | 0.293667 | 6_4:-81067424 | Msa0999270:CDS |
TGCTTTCTCAGGCACATTGA+TGG | 0.308029 | 6_4:+81066520 | None:intergenic |
ACCATATCTGGTGTCTTATC+AGG | 0.313507 | 6_4:+81066452 | None:intergenic |
TTTAATCTGATGTACTATTA+GGG | 0.319518 | 6_4:-81066174 | Msa0999270:three_prime_UTR |
CTTCTCAGAAAGGTGTCTAT+TGG | 0.334001 | 6_4:-81067318 | Msa0999270:CDS |
AGCAGCTAAATCATCATAAT+CGG | 0.338559 | 6_4:+81066295 | None:intergenic |
CATCGTCAAACAAAATTTGT+AGG | 0.342651 | 6_4:+81066612 | None:intergenic |
GTAAATCACCATCGTCAAAT+TGG | 0.342652 | 6_4:+81067236 | None:intergenic |
GACCTTCTTCTTGCTTTCTC+AGG | 0.347634 | 6_4:+81066509 | None:intergenic |
CTAACGGTGGGCACAAATAT+CGG | 0.349940 | 6_4:-81067498 | Msa0999270:CDS |
TTCCTAGCAGTGGCAGTGTC+CGG | 0.359272 | 6_4:+81067175 | None:intergenic |
TAATTCTGAACATGATTTGC+AGG | 0.366825 | 6_4:-81066840 | Msa0999270:CDS |
GGTGCACGAGGGACCATATC+TGG | 0.373763 | 6_4:+81066440 | None:intergenic |
CGCGAAGAATCGCGAAGATT+CGG | 0.389889 | 6_4:+81070785 | None:intergenic |
TCTCTGGCCTCTCCAAGAAC+AGG | 0.393346 | 6_4:+81066770 | None:intergenic |
ACTTCATCATACCTAGTGAT+TGG | 0.394060 | 6_4:+81067394 | None:intergenic |
CTGTAGTACGGCTTTACCTT+AGG | 0.394422 | 6_4:+81067034 | None:intergenic |
GTCGTGGATTCGCCGCGAAA+TGG | 0.396749 | 6_4:-81070674 | Msa0999270:intron |
ATCTCAGACTTGCCTTGTAA+TGG | 0.403884 | 6_4:+81067547 | None:intergenic |
CTCGTCTTGAGTTTAGAATT+AGG | 0.406118 | 6_4:+81066983 | None:intergenic |
TTCTCAGGCACATTGATGGT+TGG | 0.412764 | 6_4:+81066524 | None:intergenic |
CTCTGAGAGTTATCAAGATC+AGG | 0.413449 | 6_4:+81067079 | None:intergenic |
AGAGAAAATCCGATCAGGTT+TGG | 0.415957 | 6_4:-81066864 | Msa0999270:CDS |
TCCTAGCAGTGGCAGTGTCC+GGG | 0.416483 | 6_4:+81067176 | None:intergenic |
TGATGTATTGAAGGATTTGT+TGG | 0.419272 | 6_4:+81066911 | None:intergenic |
GATTGATAATATTTCAGCTC+TGG | 0.419842 | 6_4:+81066091 | None:intergenic |
ATAGCTTCCCTGCATTCCTC+AGG | 0.419858 | 6_4:+81068160 | None:intergenic |
AAGTCGTCATGCACATCAAA+TGG | 0.425691 | 6_4:-81066483 | Msa0999270:CDS |
AATATAGTAGAAAATTATAA+AGG | 0.426004 | 6_4:+81065935 | None:intergenic |
ATCATCATAATCGGGTAAGT+TGG | 0.426333 | 6_4:+81066304 | None:intergenic |
TCATCATAATCGGGTAAGTT+GGG | 0.434205 | 6_4:+81066305 | None:intergenic |
TACCAGAGTTACGCGACCTT+CGG | 0.439317 | 6_4:-81068099 | Msa0999270:CDS |
ACTATGCTTGACGGCTTACT+CGG | 0.452205 | 6_4:-81070696 | Msa0999270:CDS |
ATGGTGATTTACATGATAGA+AGG | 0.454702 | 6_4:-81067225 | Msa0999270:CDS |
CCACCATGATTAACAGCAAA+TGG | 0.456593 | 6_4:+81067106 | None:intergenic |
TGCCGAAGGTCGCGTAACTC+TGG | 0.462005 | 6_4:+81068097 | None:intergenic |
ATTTGTGCCCACCGTTAGAA+TGG | 0.465435 | 6_4:+81067503 | None:intergenic |
CTCTCAGAGAAAAGTTCAAA+AGG | 0.466399 | 6_4:-81067065 | Msa0999270:CDS |
GATGTATTGAAGGATTTGTT+GGG | 0.468522 | 6_4:+81066912 | None:intergenic |
GTGGATGCCCTGAGGAATGC+AGG | 0.469109 | 6_4:-81068168 | Msa0999270:CDS |
TCTCCCTTATGTTCCTCTCA+AGG | 0.471480 | 6_4:+81066262 | None:intergenic |
ATTGGTGATCTGTTGGTGAA+TGG | 0.476009 | 6_4:-81070137 | Msa0999270:CDS |
ACCAATTGGATGTTCTTCTC+AGG | 0.479571 | 6_4:-81067272 | Msa0999270:CDS |
TGCCCACCGTTAGAATGGTC+AGG | 0.479577 | 6_4:+81067508 | None:intergenic |
CGATCTTCAACTATGCTTGA+CGG | 0.482981 | 6_4:-81070705 | Msa0999270:exon |
TTACCTTGGAGCAGAAGGTT+CGG | 0.485215 | 6_4:-81067902 | Msa0999270:CDS |
CATAAATCTGACCATTCAGT+TGG | 0.486560 | 6_4:-81067574 | Msa0999270:CDS |
TCTGTAGTAGAAGCAGCGTC+AGG | 0.488188 | 6_4:+81066884 | None:intergenic |
TGATTAAGTTGACGAAGAAT+CGG | 0.489278 | 6_4:-81070214 | Msa0999270:CDS |
ACCTGATAAGACACCAGATA+TGG | 0.491819 | 6_4:-81066453 | Msa0999270:CDS |
GCGGCCTTGAGAGGAACATA+AGG | 0.494047 | 6_4:-81066266 | Msa0999270:exon |
TGATCTGTTGGTGAATGGAT+TGG | 0.495157 | 6_4:-81070132 | Msa0999270:CDS |
GTAATGGTTTCCCAACTGAA+TGG | 0.496753 | 6_4:+81067563 | None:intergenic |
GTTGATGCAAGAGATTTCTT+CGG | 0.497967 | 6_4:-81067880 | Msa0999270:CDS |
AGTATGCTAAAACCACCAAT+TGG | 0.501031 | 6_4:-81067286 | Msa0999270:CDS |
GAACCATTTGCTGTTAATCA+TGG | 0.501739 | 6_4:-81067109 | Msa0999270:CDS |
GTAAGTTGGGATGCACATGC+CGG | 0.504587 | 6_4:+81066318 | None:intergenic |
TCCTGAGAAGAACATCCAAT+TGG | 0.510314 | 6_4:+81067271 | None:intergenic |
CCTAAACAATTACACACACT+TGG | 0.512555 | 6_4:+81065908 | None:intergenic |
TCTTCACATATTGACAATGA+TGG | 0.515554 | 6_4:-81066938 | Msa0999270:CDS |
TAAGTTGGGATGCACATGCC+GGG | 0.518395 | 6_4:+81066319 | None:intergenic |
GATTGAAATCCTGCATGACT+CGG | 0.522678 | 6_4:+81067148 | None:intergenic |
TGTCCGGGGTTTCTCTCACA+CGG | 0.524180 | 6_4:+81067191 | None:intergenic |
TGAGAAGAACATCCAATTGG+TGG | 0.524489 | 6_4:+81067274 | None:intergenic |
CATGCACATCAAATGGATGA+TGG | 0.527228 | 6_4:-81066476 | Msa0999270:CDS |
CAATGATCACACAATTATGC+TGG | 0.527403 | 6_4:+81066200 | None:intergenic |
GAAGAGCTTACTTCTCAGAA+AGG | 0.527409 | 6_4:-81067328 | Msa0999270:CDS |
GCAGCTAAATCATCATAATC+GGG | 0.528846 | 6_4:+81066296 | None:intergenic |
GCTAGGCTTGCGGCCTTGAG+AGG | 0.528998 | 6_4:-81066275 | Msa0999270:CDS |
ACTACAGAGAAAATCCGATC+AGG | 0.529429 | 6_4:-81066869 | Msa0999270:CDS |
CAAATATTTCAGGAGAGATA+CGG | 0.534258 | 6_4:-81068076 | Msa0999270:CDS |
CTGAAGCTGCGAGAAAATCA+AGG | 0.534261 | 6_4:-81066664 | Msa0999270:CDS |
AGGAAGTCTCCGAGTCATGC+AGG | 0.534848 | 6_4:-81067157 | Msa0999270:CDS |
GGGTATTGATGAAGATTACA+TGG | 0.536768 | 6_4:-81066154 | Msa0999270:three_prime_UTR |
ATCTCTTGTGATTGTTCGTG+AGG | 0.537452 | 6_4:+81066401 | None:intergenic |
TGGATGTTAATGCTTATGGA+AGG | 0.538899 | 6_4:-81070112 | Msa0999270:CDS |
CAGAATTATCCAAACCTGAT+CGG | 0.539142 | 6_4:+81066855 | None:intergenic |
TGCTCCAAGGTAAAAGACTT+CGG | 0.539298 | 6_4:+81067912 | None:intergenic |
CGGCCTTGAGAGGAACATAA+GGG | 0.541190 | 6_4:-81066265 | Msa0999270:exon |
AGAATCGGATCGATGTGATA+AGG | 0.542820 | 6_4:-81070199 | Msa0999270:CDS |
GTCCGGGGTTTCTCTCACAC+GGG | 0.543703 | 6_4:+81067192 | None:intergenic |
TGGTGATTTACATGATAGAA+GGG | 0.549826 | 6_4:-81067224 | Msa0999270:CDS |
TCGATGTGATAAGGAGGAAG+AGG | 0.553696 | 6_4:-81070190 | Msa0999270:CDS |
TCACGAACAATCACAAGAGA+TGG | 0.557525 | 6_4:-81066399 | Msa0999270:CDS |
ATAAATCTGACCATTCAGTT+GGG | 0.559105 | 6_4:-81067573 | Msa0999270:CDS |
GGGATGGCATTACTGTAGTA+CGG | 0.562596 | 6_4:+81067022 | None:intergenic |
CTTGACGGCTTACTCGGTCG+TGG | 0.565345 | 6_4:-81070690 | Msa0999270:CDS |
TCAAAAGGATGAAACTCCTA+AGG | 0.565572 | 6_4:-81067050 | Msa0999270:CDS |
CCTAGCAGTGGCAGTGTCCG+GGG | 0.566606 | 6_4:+81067177 | None:intergenic |
CACCCGTGTGAGAGAAACCC+CGG | 0.569000 | 6_4:-81067194 | Msa0999270:CDS |
ATTATGATGATTTAGCTGCT+AGG | 0.570267 | 6_4:-81066292 | Msa0999270:CDS |
CTCTGGCCTCTCCAAGAACA+GGG | 0.570679 | 6_4:+81066771 | None:intergenic |
TTCCTAGCAACGGATTGCCA+TGG | 0.571107 | 6_4:+81067353 | None:intergenic |
TGCCTGAGAAAGCAAGAAGA+AGG | 0.573909 | 6_4:-81066511 | Msa0999270:CDS |
TGATTTAGCTGCTAGGCTTG+CGG | 0.576201 | 6_4:-81066285 | Msa0999270:CDS |
GGCGCAGGCACTCGAAATCA+CGG | 0.578205 | 6_4:-81066718 | Msa0999270:CDS |
CAGATAGATCAAAAGAAGCC+CGG | 0.578269 | 6_4:-81066337 | Msa0999270:CDS |
GAACGATTCTTCAACTCAGA+AGG | 0.584971 | 6_4:+81070747 | None:intergenic |
GATGTCAAAATCCTCTGCTA+AGG | 0.585023 | 6_4:-81067817 | Msa0999270:intron |
GGATTGCCATGGCTATCCCT+TGG | 0.591113 | 6_4:+81067364 | None:intergenic |
ACAATTGCACATCACCAACA+TGG | 0.593064 | 6_4:+81066054 | None:intergenic |
CAACCGAACCTTCTGCTCCA+AGG | 0.593201 | 6_4:+81067899 | None:intergenic |
TCAGAAAGGTGTCTATTGGA+AGG | 0.593385 | 6_4:-81067314 | Msa0999270:CDS |
TAGCTTCCCTGCATTCCTCA+GGG | 0.593501 | 6_4:+81068161 | None:intergenic |
AAAGGTGTCTATTGGAAGGA+GGG | 0.594393 | 6_4:-81067310 | Msa0999270:CDS |
TCAGTTGGGAAACCATTACA+AGG | 0.596326 | 6_4:-81067559 | Msa0999270:CDS |
AGAGAAAGAGAACTAAGTAG+TGG | 0.596999 | 6_4:+81070824 | None:intergenic |
AGCCATGGCAATCCGTTGCT+AGG | 0.597124 | 6_4:-81067355 | Msa0999270:CDS |
CCCCGGACACTGCCACTGCT+AGG | 0.597507 | 6_4:-81067177 | Msa0999270:CDS |
ACAAGATGTCAATGTTAACT+CGG | 0.603860 | 6_4:+81069273 | None:intergenic |
GAACGATATTGGTGATCTGT+TGG | 0.606795 | 6_4:-81070144 | Msa0999270:CDS |
GGATGTTAATGCTTATGGAA+GGG | 0.608856 | 6_4:-81070111 | Msa0999270:intron |
AAGGATTCAAGCCAATCACT+AGG | 0.610407 | 6_4:-81067405 | Msa0999270:CDS |
TGGATGCCCTGAGGAATGCA+GGG | 0.611806 | 6_4:-81068167 | Msa0999270:CDS |
GTGCTTCAACACAAAATCAC+AGG | 0.613053 | 6_4:+81069231 | None:intergenic |
GAAAGGTGTCTATTGGAAGG+AGG | 0.613520 | 6_4:-81067311 | Msa0999270:CDS |
AGAATGTTATGTCAATCAAG+AGG | 0.615113 | 6_4:-81068044 | Msa0999270:intron |
TCTCCTGAAATATTTGCCGA+AGG | 0.621342 | 6_4:+81068083 | None:intergenic |
GTCCTGACCATTCTAACGGT+GGG | 0.623146 | 6_4:-81067510 | Msa0999270:CDS |
GAAACTGATCGAGGTGCACG+AGG | 0.623244 | 6_4:+81066428 | None:intergenic |
AAAAGTCCTGACCATTCTAA+CGG | 0.623323 | 6_4:-81067514 | Msa0999270:CDS |
GCACAAATATCGGAATGGTA+AGG | 0.624321 | 6_4:-81067488 | Msa0999270:CDS |
AAGCATAGTTGAAGATCGAT+CGG | 0.624435 | 6_4:+81070710 | None:intergenic |
GTGATTTACATGATAGAAGG+GGG | 0.626943 | 6_4:-81067222 | Msa0999270:CDS |
CGGGGTTTCTCTCACACGGG+TGG | 0.633535 | 6_4:+81067195 | None:intergenic |
ATCGGATCGATGTGATAAGG+AGG | 0.633916 | 6_4:-81070196 | Msa0999270:CDS |
GGTGGGCACAAATATCGGAA+TGG | 0.637524 | 6_4:-81067493 | Msa0999270:CDS |
AGAATCCCCTGTTCTTGGAG+AGG | 0.640686 | 6_4:-81066777 | Msa0999270:CDS |
GAAATATTATCAATCAGCCA+TGG | 0.641095 | 6_4:-81066083 | Msa0999270:three_prime_UTR |
GGTGATTTACATGATAGAAG+GGG | 0.642871 | 6_4:-81067223 | Msa0999270:CDS |
TCAGTTTCTGTAGCACTGAG+AGG | 0.643895 | 6_4:+81069209 | None:intergenic |
AGTGTTCTGAGTAGAAATTG+AGG | 0.645961 | 6_4:-81065958 | Msa0999270:three_prime_UTR |
ACTCAGTCGAGCATGTCTAG+TGG | 0.647004 | 6_4:+81066817 | None:intergenic |
ATGATGAAGTCAATCTACCA+AGG | 0.648498 | 6_4:-81067381 | Msa0999270:CDS |
CACCAACATGGACATAGCCA+TGG | 0.650396 | 6_4:+81066066 | None:intergenic |
AGTCCTGACCATTCTAACGG+TGG | 0.653470 | 6_4:-81067511 | Msa0999270:CDS |
CCATTTGCTGTTAATCATGG+TGG | 0.653627 | 6_4:-81067106 | Msa0999270:CDS |
TGATGAAGTCAATCTACCAA+GGG | 0.661992 | 6_4:-81067380 | Msa0999270:CDS |
ACTCGGAGACTTCCTAGCAG+TGG | 0.663654 | 6_4:+81067165 | None:intergenic |
AATCTACCAAGGGATAGCCA+TGG | 0.679655 | 6_4:-81067370 | Msa0999270:CDS |
TGAGGACAACACCTTAGCAG+AGG | 0.682039 | 6_4:+81067806 | None:intergenic |
AGCCATGGCTATGTCCATGT+TGG | 0.683738 | 6_4:-81066068 | Msa0999270:three_prime_UTR |
TCTCAGTGCTACAGAAACTG+AGG | 0.697538 | 6_4:-81069207 | Msa0999270:intron |
CGAGTGCACCAATTTGACGA+TGG | 0.698820 | 6_4:-81067244 | Msa0999270:CDS |
TCTGGCCTCTCCAAGAACAG+GGG | 0.703078 | 6_4:+81066772 | None:intergenic |
TGAGGAAGAGAAACTGATCG+AGG | 0.716604 | 6_4:+81066419 | None:intergenic |
AAACTGATCGAGGTGCACGA+GGG | 0.725458 | 6_4:+81066429 | None:intergenic |
AGACGAGACGAATCAAAACG+TGG | 0.739618 | 6_4:-81066635 | Msa0999270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAGTAGAAAATTATAA+AGG | + | chr6_4:81070839-81070858 | None:intergenic | 10.0% |
!!! | GTTAATGTGTTTTTTTTTTT+TGG | - | chr6_4:81066517-81066536 | Msa0999270:CDS | 15.0% |
!! | TTTCATAATTAGAAATAGAA+TGG | - | chr6_4:81066903-81066922 | Msa0999270:CDS | 15.0% |
!! | TTGAAATATTCATAATCTTA+GGG | + | chr6_4:81067019-81067038 | None:intergenic | 15.0% |
!!! | TTTGAAATATTCATAATCTT+AGG | + | chr6_4:81067020-81067039 | None:intergenic | 15.0% |
!! | AGATTATGAATATTTCAAAT+TGG | - | chr6_4:81067021-81067040 | Msa0999270:CDS | 15.0% |
!!! | ACTATTTTCTTAATTTAACT+TGG | - | chr6_4:81067433-81067452 | Msa0999270:CDS | 15.0% |
!!! | TTTTAAATTTCTATAAGAGA+TGG | + | chr6_4:81067737-81067756 | None:intergenic | 15.0% |
!! | ATAGAAATTTAAAAGTCATA+TGG | - | chr6_4:81067743-81067762 | Msa0999270:intron | 15.0% |
!! | AAACTAAAAAGTAAATGAAA+TGG | + | chr6_4:81067847-81067866 | None:intergenic | 15.0% |
!! | ATTATAAGAATAATGATTGA+TGG | - | chr6_4:81068111-81068130 | Msa0999270:CDS | 15.0% |
!!! | AAAATTATTCATTTTGTAGT+TGG | - | chr6_4:81068330-81068349 | Msa0999270:intron | 15.0% |
!! | TATGTATAATTGTAATGATA+TGG | + | chr6_4:81068775-81068794 | None:intergenic | 15.0% |
!!! | GAAGATTTTTGTTTTAATAT+AGG | + | chr6_4:81070031-81070050 | None:intergenic | 15.0% |
!! | AGAAAGATTAATGACTTAAA+TGG | + | chr6_4:81065896-81065915 | None:intergenic | 20.0% |
!! | ATTGAAATGTAGTTATGATT+CGG | - | chr6_4:81066197-81066216 | Msa0999270:three_prime_UTR | 20.0% |
!!! | TTAATTTTGAAGTAAATCGT+TGG | - | chr6_4:81066243-81066262 | Msa0999270:three_prime_UTR | 20.0% |
!! | TATGAAATTGTTGCAATTTA+TGG | - | chr6_4:81066737-81066756 | Msa0999270:CDS | 20.0% |
!!! | AATGGATTATGAATATGTTT+TGG | - | chr6_4:81066854-81066873 | Msa0999270:CDS | 20.0% |
!! | ATTAATCTAAACAAAACAGT+GGG | + | chr6_4:81066958-81066977 | None:intergenic | 20.0% |
!! | ATAGTAAGTGGTTAATTATA+GGG | + | chr6_4:81067077-81067096 | None:intergenic | 20.0% |
!! | TAGTAAGTTGTTAAACTATA+AGG | + | chr6_4:81067109-81067128 | None:intergenic | 20.0% |
!! | TTAACAACTTACTATTAATG+TGG | - | chr6_4:81067115-81067134 | Msa0999270:CDS | 20.0% |
!! | AGATTATGACTATTTCAAAA+GGG | + | chr6_4:81067232-81067251 | None:intergenic | 20.0% |
!!! | TAGTCTTTTGTTTAATGTAT+TGG | - | chr6_4:81067303-81067322 | Msa0999270:CDS | 20.0% |
!!! | ACTTGTGAGAATTTTAAATT+TGG | - | chr6_4:81067387-81067406 | Msa0999270:CDS | 20.0% |
!!! | GAGGTATAAATCTATTTTAA+TGG | - | chr6_4:81067583-81067602 | Msa0999270:CDS | 20.0% |
!!! | TGTAACTTTTTTTATTTCTC+AGG | - | chr6_4:81067624-81067643 | Msa0999270:intron | 20.0% |
!!! | GTAACTTTTTTTATTTCTCA+GGG | - | chr6_4:81067625-81067644 | Msa0999270:intron | 20.0% |
!!! | TAACTTTTTTTATTTCTCAG+GGG | - | chr6_4:81067626-81067645 | Msa0999270:intron | 20.0% |
!! | TCATAAATAGTGATTTAGAA+TGG | + | chr6_4:81067888-81067907 | None:intergenic | 20.0% |
!! | TAGACTCTATCTAATTATAA+CGG | - | chr6_4:81068082-81068101 | Msa0999270:CDS | 20.0% |
!!! | TGTTTTAATATCTTTTACAG+TGG | - | chr6_4:81068584-81068603 | Msa0999270:intron | 20.0% |
!! | AAAACTAATAGAACAATGTA+AGG | + | chr6_4:81068992-81069011 | None:intergenic | 20.0% |
!! | ATCAATCATGTAAATAATGA+GGG | + | chr6_4:81069063-81069082 | None:intergenic | 20.0% |
!! | AATCAATCATGTAAATAATG+AGG | + | chr6_4:81069064-81069083 | None:intergenic | 20.0% |
!! | AATGTAAGCATATGTTAAAA+TGG | + | chr6_4:81069121-81069140 | None:intergenic | 20.0% |
!!! | CAAATGTATTTTATTGGTAT+TGG | + | chr6_4:81069156-81069175 | None:intergenic | 20.0% |
!!! | TTAGAATTAGGTTTTACATA+AGG | + | chr6_4:81069779-81069798 | None:intergenic | 20.0% |
!!! | TTTTAATATAGGAAATTCTC+TGG | + | chr6_4:81070020-81070039 | None:intergenic | 20.0% |
!! | TATTAAAACAAAAATCTTCG+AGG | - | chr6_4:81070032-81070051 | Msa0999270:intron | 20.0% |
!!! | TTTTAATCTGATGTACTATT+AGG | - | chr6_4:81070596-81070615 | Msa0999270:intron | 20.0% |
!! | TTTAATCTGATGTACTATTA+GGG | - | chr6_4:81070597-81070616 | Msa0999270:intron | 20.0% |
! | TTGTTAATGTAGTTATGATG+AGG | - | chr6_4:81066360-81066379 | Msa0999270:CDS | 25.0% |
!!! | AAGTTTTTGAAGAACGATAT+TGG | - | chr6_4:81066616-81066635 | Msa0999270:CDS | 25.0% |
!! | ACTTGATTTTGTTGAATTTG+TGG | - | chr6_4:81066691-81066710 | Msa0999270:CDS | 25.0% |
! | AGTTATGTGAGACTATTATA+TGG | - | chr6_4:81066764-81066783 | Msa0999270:CDS | 25.0% |
! | GATTAATCTAAACAAAACAG+TGG | + | chr6_4:81066959-81066978 | None:intergenic | 25.0% |
! | ATTCTATTAAACTGTCAAGT+TGG | - | chr6_4:81067050-81067069 | Msa0999270:CDS | 25.0% |
! | GATAGTAAGTGGTTAATTAT+AGG | + | chr6_4:81067078-81067097 | None:intergenic | 25.0% |
! | TTAACCACTTACTATCAATT+AGG | - | chr6_4:81067082-81067101 | Msa0999270:CDS | 25.0% |
! | TCAGTATGTGGTTAAATATA+GGG | + | chr6_4:81067142-81067161 | None:intergenic | 25.0% |
! | ATCAGTATGTGGTTAAATAT+AGG | + | chr6_4:81067143-81067162 | None:intergenic | 25.0% |
!! | AAATTGATAGTATCAGTATG+TGG | + | chr6_4:81067154-81067173 | None:intergenic | 25.0% |
! | ATCCTTCTTAGATTATGTTA+GGG | + | chr6_4:81067180-81067199 | None:intergenic | 25.0% |
! | AATCCTTCTTAGATTATGTT+AGG | + | chr6_4:81067181-81067200 | None:intergenic | 25.0% |
! | GAGATTATGACTATTTCAAA+AGG | + | chr6_4:81067233-81067252 | None:intergenic | 25.0% |
! | TTTCTTCTTCATTTGAATCA+TGG | - | chr6_4:81067653-81067672 | Msa0999270:intron | 25.0% |
! | ATTAGAAAACCACCAAAAAA+AGG | + | chr6_4:81067780-81067799 | None:intergenic | 25.0% |
! | CAAATAGGCTTTCTTATAAT+TGG | - | chr6_4:81068019-81068038 | Msa0999270:intron | 25.0% |
!!! | ACTGTTTTGATGTCATATAA+TGG | - | chr6_4:81068204-81068223 | Msa0999270:intron | 25.0% |
!!! | TTGTCTTATTTATTTTGAGC+TGG | - | chr6_4:81068382-81068401 | Msa0999270:intron | 25.0% |
! | ATGTAAATAATGAGGGAAAA+CGG | + | chr6_4:81069056-81069075 | None:intergenic | 25.0% |
!! | CACAAGCAAATGTATTTTAT+TGG | + | chr6_4:81069162-81069181 | None:intergenic | 25.0% |
! | ATAAAAAAGACGAAGAAGAA+AGG | - | chr6_4:81070188-81070207 | Msa0999270:CDS | 25.0% |
! | TAAAAAAGACGAAGAAGAAA+GGG | - | chr6_4:81070189-81070208 | Msa0999270:CDS | 25.0% |
!!! | TCAGTCACCATTTTTATTAA+TGG | - | chr6_4:81070740-81070759 | Msa0999270:five_prime_UTR | 25.0% |
! | ATTGCCACCATTAATAAAAA+TGG | + | chr6_4:81070750-81070769 | None:intergenic | 25.0% |
CGAAGAAGAAGAAAGAAAAA+AGG | + | chr6_4:81065920-81065939 | None:intergenic | 30.0% | |
AAAAAAATCGAACCATTTCG+CGG | + | chr6_4:81066112-81066131 | None:intergenic | 30.0% | |
! | TGTAGTTATGATGAGGTTTT+AGG | - | chr6_4:81066367-81066386 | Msa0999270:CDS | 30.0% |
CGATTTACTTCAAAATTCGA+AGG | + | chr6_4:81066410-81066429 | None:intergenic | 30.0% | |
!! | TGATTAAGTTGACGAAGAAT+CGG | - | chr6_4:81066557-81066576 | Msa0999270:CDS | 30.0% |
! | ATTCGAGACTTTGTTTGATT+TGG | - | chr6_4:81066879-81066898 | Msa0999270:CDS | 30.0% |
AAAATCAGGGACTAATTTAG+TGG | + | chr6_4:81066981-81067000 | None:intergenic | 30.0% | |
AGTAAAATTTGACAGAGTCA+GGG | - | chr6_4:81067205-81067224 | Msa0999270:CDS | 30.0% | |
TAAAATTCTCACAAGTCCTA+AGG | + | chr6_4:81067383-81067402 | None:intergenic | 30.0% | |
!! | TATTCATGAGATGGTTTTAC+AGG | - | chr6_4:81067460-81067479 | Msa0999270:CDS | 30.0% |
ACAAGATGTCAATGTTAACT+CGG | + | chr6_4:81067501-81067520 | None:intergenic | 30.0% | |
!! | CTTGTTATGATTTTGTTGAG+TGG | - | chr6_4:81067516-81067535 | Msa0999270:CDS | 30.0% |
! | TAATGGTTATGCTTTAGATG+TGG | - | chr6_4:81067600-81067619 | Msa0999270:intron | 30.0% |
! | AATGGTTATGCTTTAGATGT+GGG | - | chr6_4:81067601-81067620 | Msa0999270:intron | 30.0% |
TAAATTCACATAGGAAGACA+AGG | + | chr6_4:81067819-81067838 | None:intergenic | 30.0% | |
ATGGAACACTAAATTCACAT+AGG | + | chr6_4:81067828-81067847 | None:intergenic | 30.0% | |
AATTGGAATTTCAACTCTCA+AGG | - | chr6_4:81068036-81068055 | Msa0999270:intron | 30.0% | |
AGTTCAGAAATGTGAAAGAA+AGG | - | chr6_4:81068145-81068164 | Msa0999270:CDS | 30.0% | |
! | CCTACGGAATGAATAATTTT+GGG | + | chr6_4:81068171-81068190 | None:intergenic | 30.0% |
! | ACCTACGGAATGAATAATTT+TGG | + | chr6_4:81068172-81068191 | None:intergenic | 30.0% |
!!! | AGTAAGTTTTGTTCTACCTA+CGG | + | chr6_4:81068187-81068206 | None:intergenic | 30.0% |
! | ATCGAGAATATAGAGTGTTA+GGG | + | chr6_4:81068423-81068442 | None:intergenic | 30.0% |
! | TATCGAGAATATAGAGTGTT+AGG | + | chr6_4:81068424-81068443 | None:intergenic | 30.0% |
TCGATAATTCTTGATACGAA+TGG | - | chr6_4:81068438-81068457 | Msa0999270:intron | 30.0% | |
CAAATATTTCAGGAGAGATA+CGG | - | chr6_4:81068695-81068714 | Msa0999270:intron | 30.0% | |
AGAATGTTATGTCAATCAAG+AGG | - | chr6_4:81068727-81068746 | Msa0999270:intron | 30.0% | |
! | TTCGGAGTTTTCAATAAAGT+GGG | - | chr6_4:81068909-81068928 | Msa0999270:intron | 30.0% |
CGGTAACTATATCAAGAATT+GGG | + | chr6_4:81069036-81069055 | None:intergenic | 30.0% | |
ACGGTAACTATATCAAGAAT+TGG | + | chr6_4:81069037-81069056 | None:intergenic | 30.0% | |
TAAAATACATTTGCTTGTGC+AGG | - | chr6_4:81069163-81069182 | Msa0999270:intron | 30.0% | |
AAAATACATTTGCTTGTGCA+GGG | - | chr6_4:81069164-81069183 | Msa0999270:intron | 30.0% | |
ATAAATCTGACCATTCAGTT+GGG | - | chr6_4:81069198-81069217 | Msa0999270:intron | 30.0% | |
ATGGTGATTTACATGATAGA+AGG | - | chr6_4:81069546-81069565 | Msa0999270:intron | 30.0% | |
TGGTGATTTACATGATAGAA+GGG | - | chr6_4:81069547-81069566 | Msa0999270:intron | 30.0% | |
! | GAATTAGGTTTTACATAAGG+TGG | + | chr6_4:81069776-81069795 | None:intergenic | 30.0% |
TCTTCACATATTGACAATGA+TGG | - | chr6_4:81069833-81069852 | Msa0999270:intron | 30.0% | |
! | GATGTATTGAAGGATTTGTT+GGG | + | chr6_4:81069862-81069881 | None:intergenic | 30.0% |
TGATGTATTGAAGGATTTGT+TGG | + | chr6_4:81069863-81069882 | None:intergenic | 30.0% | |
! | TAATTCTGAACATGATTTGC+AGG | - | chr6_4:81069931-81069950 | Msa0999270:intron | 30.0% |
CATCGTCAAACAAAATTTGT+AGG | + | chr6_4:81070162-81070181 | None:intergenic | 30.0% | |
AGCAGCTAAATCATCATAAT+CGG | + | chr6_4:81070479-81070498 | None:intergenic | 30.0% | |
ATTATGATGATTTAGCTGCT+AGG | - | chr6_4:81070479-81070498 | Msa0999270:intron | 30.0% | |
! | GATTGATAATATTTCAGCTC+TGG | + | chr6_4:81070683-81070702 | None:intergenic | 30.0% |
GAAATATTATCAATCAGCCA+TGG | - | chr6_4:81070688-81070707 | Msa0999270:CDS | 30.0% | |
!! | GTCACCATTTTTATTAATGG+TGG | - | chr6_4:81070743-81070762 | Msa0999270:five_prime_UTR | 30.0% |
! | AACACTTTTACACTCATACA+AGG | + | chr6_4:81070799-81070818 | None:intergenic | 30.0% |
AGAGAAAGAGAACTAAGTAG+TGG | + | chr6_4:81065950-81065969 | None:intergenic | 35.0% | |
AAGCATAGTTGAAGATCGAT+CGG | + | chr6_4:81066064-81066083 | None:intergenic | 35.0% | |
GGATTGGATGTTAATGCTTA+TGG | - | chr6_4:81066655-81066674 | Msa0999270:CDS | 35.0% | |
TGGATGTTAATGCTTATGGA+AGG | - | chr6_4:81066659-81066678 | Msa0999270:CDS | 35.0% | |
GGATGTTAATGCTTATGGAA+GGG | - | chr6_4:81066660-81066679 | Msa0999270:CDS | 35.0% | |
CGATTGATATAGTTATGCCT+TGG | - | chr6_4:81066790-81066809 | Msa0999270:CDS | 35.0% | |
ATCAGTCAAATTCAAGACCA+AGG | + | chr6_4:81066810-81066829 | None:intergenic | 35.0% | |
ACTGATGATACTGTTAGTCA+AGG | - | chr6_4:81066824-81066843 | Msa0999270:CDS | 35.0% | |
GTTAGTCAAGGAATGTAGAA+TGG | - | chr6_4:81066836-81066855 | Msa0999270:CDS | 35.0% | |
CTATGCGTTGTACAAAATCA+GGG | + | chr6_4:81066994-81067013 | None:intergenic | 35.0% | |
! | AGGACCTAATTGATAGTAAG+TGG | + | chr6_4:81067089-81067108 | None:intergenic | 35.0% |
GTCCCTAACATAATCTAAGA+AGG | - | chr6_4:81067175-81067194 | Msa0999270:CDS | 35.0% | |
GAGTAAAATTTGACAGAGTC+AGG | - | chr6_4:81067204-81067223 | Msa0999270:CDS | 35.0% | |
GAATCGATAATAGAGACCTT+AGG | - | chr6_4:81067364-81067383 | Msa0999270:CDS | 35.0% | |
CTTGGATCATATTCATGAGA+TGG | - | chr6_4:81067451-81067470 | Msa0999270:CDS | 35.0% | |
ATTGATACAATCAACATGCC+AGG | - | chr6_4:81067682-81067701 | Msa0999270:intron | 35.0% | |
TCTATACAGTATATGAAGCC+TGG | + | chr6_4:81067703-81067722 | None:intergenic | 35.0% | |
!!! | GTCTAACCACTTCCTTTTTT+TGG | - | chr6_4:81067765-81067784 | Msa0999270:intron | 35.0% |
!!! | TAACCACTTCCTTTTTTTGG+TGG | - | chr6_4:81067768-81067787 | Msa0999270:intron | 35.0% |
AAACCACCAAAAAAAGGAAG+TGG | + | chr6_4:81067774-81067793 | None:intergenic | 35.0% | |
GCATACAACTTTGAGCAAAT+AGG | - | chr6_4:81068004-81068023 | Msa0999270:intron | 35.0% | |
CCCAAAATTATTCATTCCGT+AGG | - | chr6_4:81068168-81068187 | Msa0999270:CDS | 35.0% | |
ATTCTTGATACGAATGGAAC+AGG | - | chr6_4:81068444-81068463 | Msa0999270:intron | 35.0% | |
TTCTTGATACGAATGGAACA+GGG | - | chr6_4:81068445-81068464 | Msa0999270:intron | 35.0% | |
CAGCATTTCACATGAACTAT+TGG | + | chr6_4:81068484-81068503 | None:intergenic | 35.0% | |
GCAATTTAATCAGTCAGTTC+AGG | + | chr6_4:81068811-81068830 | None:intergenic | 35.0% | |
GTTGATGCAAGAGATTTCTT+CGG | - | chr6_4:81068891-81068910 | Msa0999270:intron | 35.0% | |
! | CTTCGGAGTTTTCAATAAAG+TGG | - | chr6_4:81068908-81068927 | Msa0999270:intron | 35.0% |
! | ACTCCAAAGATTTTGAACTG+AGG | - | chr6_4:81068932-81068951 | Msa0999270:intron | 35.0% |
CATCCTCAGTTCAAAATCTT+TGG | + | chr6_4:81068938-81068957 | None:intergenic | 35.0% | |
AATAGAACAATGTAAGGCTG+AGG | + | chr6_4:81068986-81069005 | None:intergenic | 35.0% | |
! | CATGATTGATTTAGTCATCG+AGG | - | chr6_4:81069073-81069092 | Msa0999270:intron | 35.0% |
!!! | CGAGGTTTTTGTTTTCCTTT+CGG | - | chr6_4:81069091-81069110 | Msa0999270:intron | 35.0% |
!!! | GAGGTTTTTGTTTTCCTTTC+GGG | - | chr6_4:81069092-81069111 | Msa0999270:intron | 35.0% |
TGTTAAAATGGTTTCCCGAA+AGG | + | chr6_4:81069109-81069128 | None:intergenic | 35.0% | |
! | GGTCAGATTTATGAGTTTTG+TGG | + | chr6_4:81069190-81069209 | None:intergenic | 35.0% |
CATAAATCTGACCATTCAGT+TGG | - | chr6_4:81069197-81069216 | Msa0999270:intron | 35.0% | |
AAAAGTCCTGACCATTCTAA+CGG | - | chr6_4:81069257-81069276 | Msa0999270:CDS | 35.0% | |
!! | TTTTCAGGGAGCTTAGATTT+GGG | + | chr6_4:81069347-81069366 | None:intergenic | 35.0% |
!!! | TTTTTCAGGGAGCTTAGATT+TGG | + | chr6_4:81069348-81069367 | None:intergenic | 35.0% |
AAATCTAAGCTCCCTGAAAA+AGG | - | chr6_4:81069347-81069366 | Msa0999270:intron | 35.0% | |
!! | TTGGCTTGAATCCTTTTTCA+GGG | + | chr6_4:81069361-81069380 | None:intergenic | 35.0% |
!!! | ATTGGCTTGAATCCTTTTTC+AGG | + | chr6_4:81069362-81069381 | None:intergenic | 35.0% |
ACTTCATCATACCTAGTGAT+TGG | + | chr6_4:81069380-81069399 | None:intergenic | 35.0% | |
ATGATGAAGTCAATCTACCA+AGG | - | chr6_4:81069390-81069409 | Msa0999270:intron | 35.0% | |
TGATGAAGTCAATCTACCAA+GGG | - | chr6_4:81069391-81069410 | Msa0999270:intron | 35.0% | |
AGTATGCTAAAACCACCAAT+TGG | - | chr6_4:81069485-81069504 | Msa0999270:intron | 35.0% | |
GTAAATCACCATCGTCAAAT+TGG | + | chr6_4:81069538-81069557 | None:intergenic | 35.0% | |
GGTGATTTACATGATAGAAG+GGG | - | chr6_4:81069548-81069567 | Msa0999270:intron | 35.0% | |
GTGATTTACATGATAGAAGG+GGG | - | chr6_4:81069549-81069568 | Msa0999270:intron | 35.0% | |
!! | GAACCATTTGCTGTTAATCA+TGG | - | chr6_4:81069662-81069681 | Msa0999270:intron | 35.0% |
CTCTCAGAGAAAAGTTCAAA+AGG | - | chr6_4:81069706-81069725 | Msa0999270:intron | 35.0% | |
TCAAAAGGATGAAACTCCTA+AGG | - | chr6_4:81069721-81069740 | Msa0999270:intron | 35.0% | |
! | TAGGTTTTACATAAGGTGGT+GGG | + | chr6_4:81069772-81069791 | None:intergenic | 35.0% |
! | TTAGGTTTTACATAAGGTGG+TGG | + | chr6_4:81069773-81069792 | None:intergenic | 35.0% |
! | CTCGTCTTGAGTTTAGAATT+AGG | + | chr6_4:81069791-81069810 | None:intergenic | 35.0% |
! | TCAGGCTTTTGATGTATTGA+AGG | + | chr6_4:81069872-81069891 | None:intergenic | 35.0% |
CAGAATTATCCAAACCTGAT+CGG | + | chr6_4:81069919-81069938 | None:intergenic | 35.0% | |
AGCTTCAGCATCTTCTTTAT+TGG | + | chr6_4:81070095-81070114 | None:intergenic | 35.0% | |
!!! | TGGTTGGCTTTTTGCTATAA+TGG | + | chr6_4:81070234-81070253 | None:intergenic | 35.0% |
TCATCATAATCGGGTAAGTT+GGG | + | chr6_4:81070469-81070488 | None:intergenic | 35.0% | |
ATCATCATAATCGGGTAAGT+TGG | + | chr6_4:81070470-81070489 | None:intergenic | 35.0% | |
GCAGCTAAATCATCATAATC+GGG | + | chr6_4:81070478-81070497 | None:intergenic | 35.0% | |
CAATGATCACACAATTATGC+TGG | + | chr6_4:81070574-81070593 | None:intergenic | 35.0% | |
!! | GGGTATTGATGAAGATTACA+TGG | - | chr6_4:81070617-81070636 | Msa0999270:intron | 35.0% |
! | AGTGTTCTGAGTAGAAATTG+AGG | - | chr6_4:81070813-81070832 | Msa0999270:five_prime_UTR | 35.0% |
CCTAAACAATTACACACACT+TGG | + | chr6_4:81070866-81070885 | None:intergenic | 35.0% | |
CCAAGTGTGTGTAATTGTTT+AGG | - | chr6_4:81070863-81070882 | Msa0999270:five_prime_UTR | 35.0% | |
!! | AATCGCGAAGATTCGGTTTT+CGG | + | chr6_4:81065982-81066001 | None:intergenic | 40.0% |
GAACGATTCTTCAACTCAGA+AGG | + | chr6_4:81066027-81066046 | None:intergenic | 40.0% | |
CGATCTTCAACTATGCTTGA+CGG | - | chr6_4:81066066-81066085 | Msa0999270:three_prime_UTR | 40.0% | |
AGAATCGGATCGATGTGATA+AGG | - | chr6_4:81066572-81066591 | Msa0999270:CDS | 40.0% | |
! | GAACGATATTGGTGATCTGT+TGG | - | chr6_4:81066627-81066646 | Msa0999270:CDS | 40.0% |
! | ATTGGTGATCTGTTGGTGAA+TGG | - | chr6_4:81066634-81066653 | Msa0999270:CDS | 40.0% |
! | TGATCTGTTGGTGAATGGAT+TGG | - | chr6_4:81066639-81066658 | Msa0999270:CDS | 40.0% |
CCTATGCGTTGTACAAAATC+AGG | + | chr6_4:81066995-81067014 | None:intergenic | 40.0% | |
! | CCTGATTTTGTACAACGCAT+AGG | - | chr6_4:81066992-81067011 | Msa0999270:CDS | 40.0% |
! | TTTGTAGGGTGCTCTCAAAT+AGG | + | chr6_4:81067261-81067280 | None:intergenic | 40.0% |
AATCCGTCCATGACTTTGTA+GGG | + | chr6_4:81067275-81067294 | None:intergenic | 40.0% | |
AAATCCGTCCATGACTTTGT+AGG | + | chr6_4:81067276-81067295 | None:intergenic | 40.0% | |
! | TACAAAGTCATGGACGGATT+TGG | - | chr6_4:81067275-81067294 | Msa0999270:CDS | 40.0% |
GTGCTTCAACACAAAATCAC+AGG | + | chr6_4:81067543-81067562 | None:intergenic | 40.0% | |
TTTCCAGCTGAATATAGCTC+CGG | - | chr6_4:81067952-81067971 | Msa0999270:intron | 40.0% | |
TGCAATATGTATGAAGACCC+CGG | + | chr6_4:81067974-81067993 | None:intergenic | 40.0% | |
TCTTGATACGAATGGAACAG+GGG | - | chr6_4:81068446-81068465 | Msa0999270:intron | 40.0% | |
TCTCCTGAAATATTTGCCGA+AGG | + | chr6_4:81068691-81068710 | None:intergenic | 40.0% | |
! | GAATCCGAAGTCTTTTACCT+TGG | - | chr6_4:81068855-81068874 | Msa0999270:intron | 40.0% |
TGCTCCAAGGTAAAAGACTT+CGG | + | chr6_4:81068862-81068881 | None:intergenic | 40.0% | |
GATGTCAAAATCCTCTGCTA+AGG | - | chr6_4:81068954-81068973 | Msa0999270:intron | 40.0% | |
GTAATGGTTTCCCAACTGAA+TGG | + | chr6_4:81069211-81069230 | None:intergenic | 40.0% | |
TCAGTTGGGAAACCATTACA+AGG | - | chr6_4:81069212-81069231 | Msa0999270:CDS | 40.0% | |
ATCTCAGACTTGCCTTGTAA+TGG | + | chr6_4:81069227-81069246 | None:intergenic | 40.0% | |
GCACAAATATCGGAATGGTA+AGG | - | chr6_4:81069283-81069302 | Msa0999270:CDS | 40.0% | |
AAGGATTCAAGCCAATCACT+AGG | - | chr6_4:81069366-81069385 | Msa0999270:intron | 40.0% | |
! | AGCTCTTCTTTTCCTAGCAA+CGG | + | chr6_4:81069431-81069450 | None:intergenic | 40.0% |
GAAGAGCTTACTTCTCAGAA+AGG | - | chr6_4:81069443-81069462 | Msa0999270:intron | 40.0% | |
!! | CTTCTCAGAAAGGTGTCTAT+TGG | - | chr6_4:81069453-81069472 | Msa0999270:intron | 40.0% |
!! | TCAGAAAGGTGTCTATTGGA+AGG | - | chr6_4:81069457-81069476 | Msa0999270:intron | 40.0% |
!! | AAAGGTGTCTATTGGAAGGA+GGG | - | chr6_4:81069461-81069480 | Msa0999270:intron | 40.0% |
TGAGAAGAACATCCAATTGG+TGG | + | chr6_4:81069500-81069519 | None:intergenic | 40.0% | |
ACCAATTGGATGTTCTTCTC+AGG | - | chr6_4:81069499-81069518 | Msa0999270:intron | 40.0% | |
TCCTGAGAAGAACATCCAAT+TGG | + | chr6_4:81069503-81069522 | None:intergenic | 40.0% | |
GATTGAAATCCTGCATGACT+CGG | + | chr6_4:81069626-81069645 | None:intergenic | 40.0% | |
CCACCATGATTAACAGCAAA+TGG | + | chr6_4:81069668-81069687 | None:intergenic | 40.0% | |
!! | CCATTTGCTGTTAATCATGG+TGG | - | chr6_4:81069665-81069684 | Msa0999270:intron | 40.0% |
! | CTCTGAGAGTTATCAAGATC+AGG | + | chr6_4:81069695-81069714 | None:intergenic | 40.0% |
!!! | TTTTACATAAGGTGGTGGGA+TGG | + | chr6_4:81069768-81069787 | None:intergenic | 40.0% |
ACTACAGAGAAAATCCGATC+AGG | - | chr6_4:81069902-81069921 | Msa0999270:intron | 40.0% | |
AGAGAAAATCCGATCAGGTT+TGG | - | chr6_4:81069907-81069926 | Msa0999270:intron | 40.0% | |
AAGTCGTCATGCACATCAAA+TGG | - | chr6_4:81070288-81070307 | Msa0999270:intron | 40.0% | |
CATGCACATCAAATGGATGA+TGG | - | chr6_4:81070295-81070314 | Msa0999270:intron | 40.0% | |
ACCTGATAAGACACCAGATA+TGG | - | chr6_4:81070318-81070337 | Msa0999270:intron | 40.0% | |
ACCATATCTGGTGTCTTATC+AGG | + | chr6_4:81070322-81070341 | None:intergenic | 40.0% | |
CAGATAGATCAAAAGAAGCC+CGG | - | chr6_4:81070434-81070453 | Msa0999270:intron | 40.0% | |
ACAATTGCACATCACCAACA+TGG | + | chr6_4:81070720-81070739 | None:intergenic | 40.0% | |
ACTATGCTTGACGGCTTACT+CGG | - | chr6_4:81066075-81066094 | Msa0999270:three_prime_UTR | 45.0% | |
ATCGGATCGATGTGATAAGG+AGG | - | chr6_4:81066575-81066594 | Msa0999270:CDS | 45.0% | |
TCGATGTGATAAGGAGGAAG+AGG | - | chr6_4:81066581-81066600 | Msa0999270:CDS | 45.0% | |
!! | GAGATGGTTTTACAGGCTGA+AGG | - | chr6_4:81067467-81067486 | Msa0999270:CDS | 45.0% |
! | TCAGTTTCTGTAGCACTGAG+AGG | + | chr6_4:81067565-81067584 | None:intergenic | 45.0% |
TCTCAGTGCTACAGAAACTG+AGG | - | chr6_4:81067564-81067583 | Msa0999270:CDS | 45.0% | |
GGAAGACAAGGAGAAAAGTC+AGG | + | chr6_4:81067807-81067826 | None:intergenic | 45.0% | |
TTCCAGCTGAATATAGCTCC+GGG | - | chr6_4:81067953-81067972 | Msa0999270:intron | 45.0% | |
TGAGCTGGTCATCTGAGTAT+TGG | - | chr6_4:81068397-81068416 | Msa0999270:intron | 45.0% | |
CTTGATACGAATGGAACAGG+GGG | - | chr6_4:81068447-81068466 | Msa0999270:intron | 45.0% | |
CGACCTTCGGCAAATATTTC+AGG | - | chr6_4:81068685-81068704 | Msa0999270:intron | 45.0% | |
! | GTCTTTTACCTTGGAGCAGA+AGG | - | chr6_4:81068864-81068883 | Msa0999270:intron | 45.0% |
TTACCTTGGAGCAGAAGGTT+CGG | - | chr6_4:81068869-81068888 | Msa0999270:intron | 45.0% | |
ATTTGTGCCCACCGTTAGAA+TGG | + | chr6_4:81069271-81069290 | None:intergenic | 45.0% | |
CTAACGGTGGGCACAAATAT+CGG | - | chr6_4:81069273-81069292 | Msa0999270:CDS | 45.0% | |
AATCTACCAAGGGATAGCCA+TGG | - | chr6_4:81069401-81069420 | Msa0999270:intron | 45.0% | |
!! | GAAAGGTGTCTATTGGAAGG+AGG | - | chr6_4:81069460-81069479 | Msa0999270:intron | 45.0% |
CTGTAGTACGGCTTTACCTT+AGG | + | chr6_4:81069740-81069759 | None:intergenic | 45.0% | |
GGGATGGCATTACTGTAGTA+CGG | + | chr6_4:81069752-81069771 | None:intergenic | 45.0% | |
GAGAAAGAATCCCCTGTTCT+TGG | - | chr6_4:81069989-81070008 | Msa0999270:intron | 45.0% | |
AACAAAAATCTTCGAGGCGC+AGG | - | chr6_4:81070038-81070057 | Msa0999270:intron | 45.0% | |
CTGAAGCTGCGAGAAAATCA+AGG | - | chr6_4:81070107-81070126 | Msa0999270:intron | 45.0% | |
AGACGAGACGAATCAAAACG+TGG | - | chr6_4:81070136-81070155 | Msa0999270:CDS | 45.0% | |
! | TTCTCAGGCACATTGATGGT+TGG | + | chr6_4:81070250-81070269 | None:intergenic | 45.0% |
TGCTTTCTCAGGCACATTGA+TGG | + | chr6_4:81070254-81070273 | None:intergenic | 45.0% | |
TGCCTGAGAAAGCAAGAAGA+AGG | - | chr6_4:81070260-81070279 | Msa0999270:intron | 45.0% | |
GACCTTCTTCTTGCTTTCTC+AGG | + | chr6_4:81070265-81070284 | None:intergenic | 45.0% | |
TGAGGAAGAGAAACTGATCG+AGG | + | chr6_4:81070355-81070374 | None:intergenic | 45.0% | |
! | CGGGCTTCTTTTGATCTATC+TGG | + | chr6_4:81070436-81070455 | None:intergenic | 45.0% |
TGATTTAGCTGCTAGGCTTG+CGG | - | chr6_4:81070486-81070505 | Msa0999270:intron | 45.0% | |
TCTCCCTTATGTTCCTCTCA+AGG | + | chr6_4:81070512-81070531 | None:intergenic | 45.0% | |
CGCGAAGAATCGCGAAGATT+CGG | + | chr6_4:81065989-81066008 | None:intergenic | 50.0% | |
!! | GAGAGCACCCTACAAAGTCA+TGG | - | chr6_4:81067265-81067284 | Msa0999270:CDS | 50.0% |
GCACCCTACAAAGTCATGGA+CGG | - | chr6_4:81067269-81067288 | Msa0999270:CDS | 50.0% | |
TCCAGCTGAATATAGCTCCG+GGG | - | chr6_4:81067954-81067973 | Msa0999270:intron | 50.0% | |
! | CTTTTACAGTGGATGCCCTG+AGG | - | chr6_4:81068595-81068614 | Msa0999270:intron | 50.0% |
TAGCTTCCCTGCATTCCTCA+GGG | + | chr6_4:81068613-81068632 | None:intergenic | 50.0% | |
ATAGCTTCCCTGCATTCCTC+AGG | + | chr6_4:81068614-81068633 | None:intergenic | 50.0% | |
TACCAGAGTTACGCGACCTT+CGG | - | chr6_4:81068672-81068691 | Msa0999270:intron | 50.0% | |
TGAGGACAACACCTTAGCAG+AGG | + | chr6_4:81068968-81068987 | None:intergenic | 50.0% | |
AGTCCTGACCATTCTAACGG+TGG | - | chr6_4:81069260-81069279 | Msa0999270:CDS | 50.0% | |
GTCCTGACCATTCTAACGGT+GGG | - | chr6_4:81069261-81069280 | Msa0999270:CDS | 50.0% | |
GGTGGGCACAAATATCGGAA+TGG | - | chr6_4:81069278-81069297 | Msa0999270:CDS | 50.0% | |
!! | TTCCTAGCAACGGATTGCCA+TGG | + | chr6_4:81069421-81069440 | None:intergenic | 50.0% |
CGAGTGCACCAATTTGACGA+TGG | - | chr6_4:81069527-81069546 | Msa0999270:intron | 50.0% | |
TCTGTAGTAGAAGCAGCGTC+AGG | + | chr6_4:81069890-81069909 | None:intergenic | 50.0% | |
ACTCAGTCGAGCATGTCTAG+TGG | + | chr6_4:81069957-81069976 | None:intergenic | 50.0% | |
AGAATCCCCTGTTCTTGGAG+AGG | - | chr6_4:81069994-81070013 | Msa0999270:intron | 50.0% | |
AAACTGATCGAGGTGCACGA+GGG | + | chr6_4:81070345-81070364 | None:intergenic | 50.0% | |
! | TAAGTTGGGATGCACATGCC+GGG | + | chr6_4:81070455-81070474 | None:intergenic | 50.0% |
! | GTAAGTTGGGATGCACATGC+CGG | + | chr6_4:81070456-81070475 | None:intergenic | 50.0% |
CGGCCTTGAGAGGAACATAA+GGG | - | chr6_4:81070506-81070525 | Msa0999270:intron | 50.0% | |
AGCCATGGCTATGTCCATGT+TGG | - | chr6_4:81070703-81070722 | Msa0999270:exon | 50.0% | |
CACCAACATGGACATAGCCA+TGG | + | chr6_4:81070708-81070727 | None:intergenic | 50.0% | |
ACCCCGGAGCTATATTCAGC+TGG | + | chr6_4:81067958-81067977 | None:intergenic | 55.0% | |
TGGATGCCCTGAGGAATGCA+GGG | - | chr6_4:81068604-81068623 | Msa0999270:intron | 55.0% | |
CAACCGAACCTTCTGCTCCA+AGG | + | chr6_4:81068875-81068894 | None:intergenic | 55.0% | |
TGCCCACCGTTAGAATGGTC+AGG | + | chr6_4:81069266-81069285 | None:intergenic | 55.0% | |
GGATTGCCATGGCTATCCCT+TGG | + | chr6_4:81069410-81069429 | None:intergenic | 55.0% | |
AGCCATGGCAATCCGTTGCT+AGG | - | chr6_4:81069416-81069435 | Msa0999270:intron | 55.0% | |
TGTCCGGGGTTTCTCTCACA+CGG | + | chr6_4:81069583-81069602 | None:intergenic | 55.0% | |
TTCCTAGCAGTGGCAGTGTC+CGG | + | chr6_4:81069599-81069618 | None:intergenic | 55.0% | |
ACTCGGAGACTTCCTAGCAG+TGG | + | chr6_4:81069609-81069628 | None:intergenic | 55.0% | |
AGGAAGTCTCCGAGTCATGC+AGG | - | chr6_4:81069614-81069633 | Msa0999270:intron | 55.0% | |
TCTGGCCTCTCCAAGAACAG+GGG | + | chr6_4:81070002-81070021 | None:intergenic | 55.0% | |
CTCTGGCCTCTCCAAGAACA+GGG | + | chr6_4:81070003-81070022 | None:intergenic | 55.0% | |
TCTCTGGCCTCTCCAAGAAC+AGG | + | chr6_4:81070004-81070023 | None:intergenic | 55.0% | |
GAAACTGATCGAGGTGCACG+AGG | + | chr6_4:81070346-81070365 | None:intergenic | 55.0% | |
GCGGCCTTGAGAGGAACATA+AGG | - | chr6_4:81070505-81070524 | Msa0999270:intron | 55.0% | |
CTTGACGGCTTACTCGGTCG+TGG | - | chr6_4:81066081-81066100 | Msa0999270:three_prime_UTR | 60.0% | |
GTCGTGGATTCGCCGCGAAA+TGG | - | chr6_4:81066097-81066116 | Msa0999270:three_prime_UTR | 60.0% | |
GTGGATGCCCTGAGGAATGC+AGG | - | chr6_4:81068603-81068622 | Msa0999270:intron | 60.0% | |
TGCCGAAGGTCGCGTAACTC+TGG | + | chr6_4:81068677-81068696 | None:intergenic | 60.0% | |
CACCCGTGTGAGAGAAACCC+CGG | - | chr6_4:81069577-81069596 | Msa0999270:intron | 60.0% | |
GTCCGGGGTTTCTCTCACAC+GGG | + | chr6_4:81069582-81069601 | None:intergenic | 60.0% | |
TCCTAGCAGTGGCAGTGTCC+GGG | + | chr6_4:81069598-81069617 | None:intergenic | 60.0% | |
GGCGCAGGCACTCGAAATCA+CGG | - | chr6_4:81070053-81070072 | Msa0999270:intron | 60.0% | |
GGTGCACGAGGGACCATATC+TGG | + | chr6_4:81070334-81070353 | None:intergenic | 60.0% | |
CGGGGTTTCTCTCACACGGG+TGG | + | chr6_4:81069579-81069598 | None:intergenic | 65.0% | |
CCTAGCAGTGGCAGTGTCCG+GGG | + | chr6_4:81069597-81069616 | None:intergenic | 65.0% | |
GCTAGGCTTGCGGCCTTGAG+AGG | - | chr6_4:81070496-81070515 | Msa0999270:intron | 65.0% | |
CCCCGGACACTGCCACTGCT+AGG | - | chr6_4:81069594-81069613 | Msa0999270:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 81065891 | 81070902 | 81065891 | ID=Msa0999270;Name=Msa0999270 |
chr6_4 | mRNA | 81065891 | 81070902 | 81065891 | ID=Msa0999270-mRNA-1;Parent=Msa0999270;Name=Msa0999270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=187|1|1|1|1|1|6|377|632 |
chr6_4 | exon | 81065891 | 81067608 | 81065891 | ID=Msa0999270-mRNA-1:exon:15465;Parent=Msa0999270-mRNA-1 |
chr6_4 | exon | 81067818 | 81067952 | 81067818 | ID=Msa0999270-mRNA-1:exon:15464;Parent=Msa0999270-mRNA-1 |
chr6_4 | exon | 81068045 | 81068189 | 81068045 | ID=Msa0999270-mRNA-1:exon:15463;Parent=Msa0999270-mRNA-1 |
chr6_4 | exon | 81069208 | 81069311 | 81069208 | ID=Msa0999270-mRNA-1:exon:15462;Parent=Msa0999270-mRNA-1 |
chr6_4 | exon | 81070112 | 81070244 | 81070112 | ID=Msa0999270-mRNA-1:exon:15461;Parent=Msa0999270-mRNA-1 |
chr6_4 | exon | 81070675 | 81070902 | 81070675 | ID=Msa0999270-mRNA-1:exon:15460;Parent=Msa0999270-mRNA-1 |
chr6_4 | five_prime_UTR | 81070716 | 81070902 | 81070716 | ID=Msa0999270-mRNA-1:five_prime_utr;Parent=Msa0999270-mRNA-1 |
chr6_4 | CDS | 81070675 | 81070715 | 81070675 | ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1 |
chr6_4 | CDS | 81070112 | 81070244 | 81070112 | ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1 |
chr6_4 | CDS | 81069208 | 81069311 | 81069208 | ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1 |
chr6_4 | CDS | 81068045 | 81068189 | 81068045 | ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1 |
chr6_4 | CDS | 81067818 | 81067952 | 81067818 | ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1 |
chr6_4 | CDS | 81066268 | 81067608 | 81066268 | ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1 |
chr6_4 | three_prime_UTR | 81065891 | 81066267 | 81065891 | ID=Msa0999270-mRNA-1:three_prime_utr;Parent=Msa0999270-mRNA-1 |
Gene Sequence |
Protein sequence |