AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0999270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999270 MtrunA17_Chr6g0485461 94.787 633 32 1 1 632 57 689 0.0 1219
Msa0999270 MtrunA17_Chr8g0390551 56.508 653 249 11 1 631 1 640 0.0 652
Msa0999270 MtrunA17_Chr2g0331801 47.222 180 95 0 1 180 1 180 2.09e-51 183
Msa0999270 MtrunA17_Chr4g0004491 52.299 174 82 1 1 174 4 176 2.50e-51 181
Msa0999270 MtrunA17_Chr8g0370931 33.333 189 116 2 4 182 20 208 1.79e-29 121
Msa0999270 MtrunA17_Chr6g0487991 32.418 182 113 2 5 176 1 182 1.02e-25 113
Msa0999270 MtrunA17_Chr6g0464791 30.208 192 124 2 1 182 3 194 5.37e-24 106
Msa0999270 MtrunA17_Chr1g0209771 29.208 202 126 3 1 192 3 197 1.07e-23 102
Msa0999270 MtrunA17_Chr2g0324121 33.526 173 106 2 1 164 1 173 2.09e-23 104
Msa0999270 MtrunA17_Chr7g0214961 28.000 175 117 2 4 169 2 176 2.15e-18 88.2
Msa0999270 MtrunA17_Chr1g0210081 28.729 181 114 4 2 169 5 183 1.84e-15 78.6
Msa0999270 MtrunA17_Chr4g0042021 25.143 175 119 2 12 176 9 181 9.14e-13 70.5
Msa0999270 MtrunA17_Chr7g0262101 25.904 166 118 1 12 172 19 184 8.28e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999270 AT4G32350.1 59.459 185 75 0 1 185 1 185 3.04e-71 244
Msa0999270 AT4G32350.1 33.333 306 160 9 330 631 466 731 7.49e-30 125
Msa0999270 AT4G32350.3 59.459 185 75 0 1 185 1 185 3.04e-71 244
Msa0999270 AT4G32350.3 33.333 306 160 9 330 631 466 731 7.49e-30 125
Msa0999270 AT1G79910.1 54.444 180 82 0 1 180 1 180 4.79e-62 211
Msa0999270 AT1G52315.1 42.458 179 98 2 10 185 10 186 3.12e-37 142
Msa0999270 AT1G79910.3 52.459 122 58 0 59 180 4 125 1.03e-35 137
Msa0999270 AT1G79910.2 52.066 121 58 0 60 180 46 166 1.39e-34 135
Msa0999270 AT4G35730.1 34.921 189 113 2 4 182 20 208 1.06e-30 126
Msa0999270 AT4G32350.2 53.608 97 45 0 89 185 1 97 3.93e-30 126
Msa0999270 AT4G32350.2 33.333 306 160 9 330 631 378 643 1.28e-29 124
Msa0999270 AT1G25420.1 32.642 193 120 2 1 183 3 195 1.26e-27 114
Msa0999270 AT1G34220.2 32.642 193 120 2 1 183 3 195 1.29e-26 115
Msa0999270 AT1G52315.2 39.669 121 68 2 68 185 18 136 2.11e-22 98.6
Msa0999270 AT1G25420.4 30.952 168 107 1 25 183 1 168 6.56e-22 97.1
Msa0999270 AT1G34220.1 28.700 223 119 3 1 183 3 225 8.61e-22 100
Msa0999270 AT2G19710.1 25.275 182 126 2 5 176 4 185 3.40e-20 95.9
Msa0999270 AT2G14830.1 32.086 187 116 2 1 177 1 186 4.82e-19 90.1
Msa0999270 AT4G29440.1 24.176 182 128 2 5 176 4 185 5.47e-18 89.0
Msa0999270 AT1G25420.3 31.496 127 78 1 66 183 1 127 3.80e-17 82.0
Msa0999270 AT1G25420.2 31.496 127 78 1 66 183 1 127 3.80e-17 82.0
Msa0999270 AT1G13340.1 28.090 178 118 2 2 169 5 182 3.35e-16 81.6
Msa0999270 AT4G29440.2 23.490 149 105 1 37 176 9 157 8.26e-13 72.4

Find 155 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTCAGTTCAAAATCTT+TGG 0.187180 6_4:+81067836 None:intergenic
CGACCTTCGGCAAATATTTC+AGG 0.230293 6_4:-81068086 Msa0999270:CDS
AGCTTCAGCATCTTCTTTAT+TGG 0.239165 6_4:+81066679 None:intergenic
GGATTGGATGTTAATGCTTA+TGG 0.259710 6_4:-81070116 Msa0999270:CDS
GAGAAAGAATCCCCTGTTCT+TGG 0.262807 6_4:-81066782 Msa0999270:CDS
AGAAAGATTAATGACTTAAA+TGG 0.263511 6_4:+81070878 None:intergenic
CCAAGTGTGTGTAATTGTTT+AGG 0.270453 6_4:-81065908 Msa0999270:three_prime_UTR
AAATCTAAGCTCCCTGAAAA+AGG 0.293667 6_4:-81067424 Msa0999270:CDS
TGCTTTCTCAGGCACATTGA+TGG 0.308029 6_4:+81066520 None:intergenic
ACCATATCTGGTGTCTTATC+AGG 0.313507 6_4:+81066452 None:intergenic
TTTAATCTGATGTACTATTA+GGG 0.319518 6_4:-81066174 Msa0999270:three_prime_UTR
CTTCTCAGAAAGGTGTCTAT+TGG 0.334001 6_4:-81067318 Msa0999270:CDS
AGCAGCTAAATCATCATAAT+CGG 0.338559 6_4:+81066295 None:intergenic
CATCGTCAAACAAAATTTGT+AGG 0.342651 6_4:+81066612 None:intergenic
GTAAATCACCATCGTCAAAT+TGG 0.342652 6_4:+81067236 None:intergenic
GACCTTCTTCTTGCTTTCTC+AGG 0.347634 6_4:+81066509 None:intergenic
CTAACGGTGGGCACAAATAT+CGG 0.349940 6_4:-81067498 Msa0999270:CDS
TTCCTAGCAGTGGCAGTGTC+CGG 0.359272 6_4:+81067175 None:intergenic
TAATTCTGAACATGATTTGC+AGG 0.366825 6_4:-81066840 Msa0999270:CDS
GGTGCACGAGGGACCATATC+TGG 0.373763 6_4:+81066440 None:intergenic
CGCGAAGAATCGCGAAGATT+CGG 0.389889 6_4:+81070785 None:intergenic
TCTCTGGCCTCTCCAAGAAC+AGG 0.393346 6_4:+81066770 None:intergenic
ACTTCATCATACCTAGTGAT+TGG 0.394060 6_4:+81067394 None:intergenic
CTGTAGTACGGCTTTACCTT+AGG 0.394422 6_4:+81067034 None:intergenic
GTCGTGGATTCGCCGCGAAA+TGG 0.396749 6_4:-81070674 Msa0999270:intron
ATCTCAGACTTGCCTTGTAA+TGG 0.403884 6_4:+81067547 None:intergenic
CTCGTCTTGAGTTTAGAATT+AGG 0.406118 6_4:+81066983 None:intergenic
TTCTCAGGCACATTGATGGT+TGG 0.412764 6_4:+81066524 None:intergenic
CTCTGAGAGTTATCAAGATC+AGG 0.413449 6_4:+81067079 None:intergenic
AGAGAAAATCCGATCAGGTT+TGG 0.415957 6_4:-81066864 Msa0999270:CDS
TCCTAGCAGTGGCAGTGTCC+GGG 0.416483 6_4:+81067176 None:intergenic
TGATGTATTGAAGGATTTGT+TGG 0.419272 6_4:+81066911 None:intergenic
GATTGATAATATTTCAGCTC+TGG 0.419842 6_4:+81066091 None:intergenic
ATAGCTTCCCTGCATTCCTC+AGG 0.419858 6_4:+81068160 None:intergenic
AAGTCGTCATGCACATCAAA+TGG 0.425691 6_4:-81066483 Msa0999270:CDS
AATATAGTAGAAAATTATAA+AGG 0.426004 6_4:+81065935 None:intergenic
ATCATCATAATCGGGTAAGT+TGG 0.426333 6_4:+81066304 None:intergenic
TCATCATAATCGGGTAAGTT+GGG 0.434205 6_4:+81066305 None:intergenic
TACCAGAGTTACGCGACCTT+CGG 0.439317 6_4:-81068099 Msa0999270:CDS
ACTATGCTTGACGGCTTACT+CGG 0.452205 6_4:-81070696 Msa0999270:CDS
ATGGTGATTTACATGATAGA+AGG 0.454702 6_4:-81067225 Msa0999270:CDS
CCACCATGATTAACAGCAAA+TGG 0.456593 6_4:+81067106 None:intergenic
TGCCGAAGGTCGCGTAACTC+TGG 0.462005 6_4:+81068097 None:intergenic
ATTTGTGCCCACCGTTAGAA+TGG 0.465435 6_4:+81067503 None:intergenic
CTCTCAGAGAAAAGTTCAAA+AGG 0.466399 6_4:-81067065 Msa0999270:CDS
GATGTATTGAAGGATTTGTT+GGG 0.468522 6_4:+81066912 None:intergenic
GTGGATGCCCTGAGGAATGC+AGG 0.469109 6_4:-81068168 Msa0999270:CDS
TCTCCCTTATGTTCCTCTCA+AGG 0.471480 6_4:+81066262 None:intergenic
ATTGGTGATCTGTTGGTGAA+TGG 0.476009 6_4:-81070137 Msa0999270:CDS
ACCAATTGGATGTTCTTCTC+AGG 0.479571 6_4:-81067272 Msa0999270:CDS
TGCCCACCGTTAGAATGGTC+AGG 0.479577 6_4:+81067508 None:intergenic
CGATCTTCAACTATGCTTGA+CGG 0.482981 6_4:-81070705 Msa0999270:exon
TTACCTTGGAGCAGAAGGTT+CGG 0.485215 6_4:-81067902 Msa0999270:CDS
CATAAATCTGACCATTCAGT+TGG 0.486560 6_4:-81067574 Msa0999270:CDS
TCTGTAGTAGAAGCAGCGTC+AGG 0.488188 6_4:+81066884 None:intergenic
TGATTAAGTTGACGAAGAAT+CGG 0.489278 6_4:-81070214 Msa0999270:CDS
ACCTGATAAGACACCAGATA+TGG 0.491819 6_4:-81066453 Msa0999270:CDS
GCGGCCTTGAGAGGAACATA+AGG 0.494047 6_4:-81066266 Msa0999270:exon
TGATCTGTTGGTGAATGGAT+TGG 0.495157 6_4:-81070132 Msa0999270:CDS
GTAATGGTTTCCCAACTGAA+TGG 0.496753 6_4:+81067563 None:intergenic
GTTGATGCAAGAGATTTCTT+CGG 0.497967 6_4:-81067880 Msa0999270:CDS
AGTATGCTAAAACCACCAAT+TGG 0.501031 6_4:-81067286 Msa0999270:CDS
GAACCATTTGCTGTTAATCA+TGG 0.501739 6_4:-81067109 Msa0999270:CDS
GTAAGTTGGGATGCACATGC+CGG 0.504587 6_4:+81066318 None:intergenic
TCCTGAGAAGAACATCCAAT+TGG 0.510314 6_4:+81067271 None:intergenic
CCTAAACAATTACACACACT+TGG 0.512555 6_4:+81065908 None:intergenic
TCTTCACATATTGACAATGA+TGG 0.515554 6_4:-81066938 Msa0999270:CDS
TAAGTTGGGATGCACATGCC+GGG 0.518395 6_4:+81066319 None:intergenic
GATTGAAATCCTGCATGACT+CGG 0.522678 6_4:+81067148 None:intergenic
TGTCCGGGGTTTCTCTCACA+CGG 0.524180 6_4:+81067191 None:intergenic
TGAGAAGAACATCCAATTGG+TGG 0.524489 6_4:+81067274 None:intergenic
CATGCACATCAAATGGATGA+TGG 0.527228 6_4:-81066476 Msa0999270:CDS
CAATGATCACACAATTATGC+TGG 0.527403 6_4:+81066200 None:intergenic
GAAGAGCTTACTTCTCAGAA+AGG 0.527409 6_4:-81067328 Msa0999270:CDS
GCAGCTAAATCATCATAATC+GGG 0.528846 6_4:+81066296 None:intergenic
GCTAGGCTTGCGGCCTTGAG+AGG 0.528998 6_4:-81066275 Msa0999270:CDS
ACTACAGAGAAAATCCGATC+AGG 0.529429 6_4:-81066869 Msa0999270:CDS
CAAATATTTCAGGAGAGATA+CGG 0.534258 6_4:-81068076 Msa0999270:CDS
CTGAAGCTGCGAGAAAATCA+AGG 0.534261 6_4:-81066664 Msa0999270:CDS
AGGAAGTCTCCGAGTCATGC+AGG 0.534848 6_4:-81067157 Msa0999270:CDS
GGGTATTGATGAAGATTACA+TGG 0.536768 6_4:-81066154 Msa0999270:three_prime_UTR
ATCTCTTGTGATTGTTCGTG+AGG 0.537452 6_4:+81066401 None:intergenic
TGGATGTTAATGCTTATGGA+AGG 0.538899 6_4:-81070112 Msa0999270:CDS
CAGAATTATCCAAACCTGAT+CGG 0.539142 6_4:+81066855 None:intergenic
TGCTCCAAGGTAAAAGACTT+CGG 0.539298 6_4:+81067912 None:intergenic
CGGCCTTGAGAGGAACATAA+GGG 0.541190 6_4:-81066265 Msa0999270:exon
AGAATCGGATCGATGTGATA+AGG 0.542820 6_4:-81070199 Msa0999270:CDS
GTCCGGGGTTTCTCTCACAC+GGG 0.543703 6_4:+81067192 None:intergenic
TGGTGATTTACATGATAGAA+GGG 0.549826 6_4:-81067224 Msa0999270:CDS
TCGATGTGATAAGGAGGAAG+AGG 0.553696 6_4:-81070190 Msa0999270:CDS
TCACGAACAATCACAAGAGA+TGG 0.557525 6_4:-81066399 Msa0999270:CDS
ATAAATCTGACCATTCAGTT+GGG 0.559105 6_4:-81067573 Msa0999270:CDS
GGGATGGCATTACTGTAGTA+CGG 0.562596 6_4:+81067022 None:intergenic
CTTGACGGCTTACTCGGTCG+TGG 0.565345 6_4:-81070690 Msa0999270:CDS
TCAAAAGGATGAAACTCCTA+AGG 0.565572 6_4:-81067050 Msa0999270:CDS
CCTAGCAGTGGCAGTGTCCG+GGG 0.566606 6_4:+81067177 None:intergenic
CACCCGTGTGAGAGAAACCC+CGG 0.569000 6_4:-81067194 Msa0999270:CDS
ATTATGATGATTTAGCTGCT+AGG 0.570267 6_4:-81066292 Msa0999270:CDS
CTCTGGCCTCTCCAAGAACA+GGG 0.570679 6_4:+81066771 None:intergenic
TTCCTAGCAACGGATTGCCA+TGG 0.571107 6_4:+81067353 None:intergenic
TGCCTGAGAAAGCAAGAAGA+AGG 0.573909 6_4:-81066511 Msa0999270:CDS
TGATTTAGCTGCTAGGCTTG+CGG 0.576201 6_4:-81066285 Msa0999270:CDS
GGCGCAGGCACTCGAAATCA+CGG 0.578205 6_4:-81066718 Msa0999270:CDS
CAGATAGATCAAAAGAAGCC+CGG 0.578269 6_4:-81066337 Msa0999270:CDS
GAACGATTCTTCAACTCAGA+AGG 0.584971 6_4:+81070747 None:intergenic
GATGTCAAAATCCTCTGCTA+AGG 0.585023 6_4:-81067817 Msa0999270:intron
GGATTGCCATGGCTATCCCT+TGG 0.591113 6_4:+81067364 None:intergenic
ACAATTGCACATCACCAACA+TGG 0.593064 6_4:+81066054 None:intergenic
CAACCGAACCTTCTGCTCCA+AGG 0.593201 6_4:+81067899 None:intergenic
TCAGAAAGGTGTCTATTGGA+AGG 0.593385 6_4:-81067314 Msa0999270:CDS
TAGCTTCCCTGCATTCCTCA+GGG 0.593501 6_4:+81068161 None:intergenic
AAAGGTGTCTATTGGAAGGA+GGG 0.594393 6_4:-81067310 Msa0999270:CDS
TCAGTTGGGAAACCATTACA+AGG 0.596326 6_4:-81067559 Msa0999270:CDS
AGAGAAAGAGAACTAAGTAG+TGG 0.596999 6_4:+81070824 None:intergenic
AGCCATGGCAATCCGTTGCT+AGG 0.597124 6_4:-81067355 Msa0999270:CDS
CCCCGGACACTGCCACTGCT+AGG 0.597507 6_4:-81067177 Msa0999270:CDS
ACAAGATGTCAATGTTAACT+CGG 0.603860 6_4:+81069273 None:intergenic
GAACGATATTGGTGATCTGT+TGG 0.606795 6_4:-81070144 Msa0999270:CDS
GGATGTTAATGCTTATGGAA+GGG 0.608856 6_4:-81070111 Msa0999270:intron
AAGGATTCAAGCCAATCACT+AGG 0.610407 6_4:-81067405 Msa0999270:CDS
TGGATGCCCTGAGGAATGCA+GGG 0.611806 6_4:-81068167 Msa0999270:CDS
GTGCTTCAACACAAAATCAC+AGG 0.613053 6_4:+81069231 None:intergenic
GAAAGGTGTCTATTGGAAGG+AGG 0.613520 6_4:-81067311 Msa0999270:CDS
AGAATGTTATGTCAATCAAG+AGG 0.615113 6_4:-81068044 Msa0999270:intron
TCTCCTGAAATATTTGCCGA+AGG 0.621342 6_4:+81068083 None:intergenic
GTCCTGACCATTCTAACGGT+GGG 0.623146 6_4:-81067510 Msa0999270:CDS
GAAACTGATCGAGGTGCACG+AGG 0.623244 6_4:+81066428 None:intergenic
AAAAGTCCTGACCATTCTAA+CGG 0.623323 6_4:-81067514 Msa0999270:CDS
GCACAAATATCGGAATGGTA+AGG 0.624321 6_4:-81067488 Msa0999270:CDS
AAGCATAGTTGAAGATCGAT+CGG 0.624435 6_4:+81070710 None:intergenic
GTGATTTACATGATAGAAGG+GGG 0.626943 6_4:-81067222 Msa0999270:CDS
CGGGGTTTCTCTCACACGGG+TGG 0.633535 6_4:+81067195 None:intergenic
ATCGGATCGATGTGATAAGG+AGG 0.633916 6_4:-81070196 Msa0999270:CDS
GGTGGGCACAAATATCGGAA+TGG 0.637524 6_4:-81067493 Msa0999270:CDS
AGAATCCCCTGTTCTTGGAG+AGG 0.640686 6_4:-81066777 Msa0999270:CDS
GAAATATTATCAATCAGCCA+TGG 0.641095 6_4:-81066083 Msa0999270:three_prime_UTR
GGTGATTTACATGATAGAAG+GGG 0.642871 6_4:-81067223 Msa0999270:CDS
TCAGTTTCTGTAGCACTGAG+AGG 0.643895 6_4:+81069209 None:intergenic
AGTGTTCTGAGTAGAAATTG+AGG 0.645961 6_4:-81065958 Msa0999270:three_prime_UTR
ACTCAGTCGAGCATGTCTAG+TGG 0.647004 6_4:+81066817 None:intergenic
ATGATGAAGTCAATCTACCA+AGG 0.648498 6_4:-81067381 Msa0999270:CDS
CACCAACATGGACATAGCCA+TGG 0.650396 6_4:+81066066 None:intergenic
AGTCCTGACCATTCTAACGG+TGG 0.653470 6_4:-81067511 Msa0999270:CDS
CCATTTGCTGTTAATCATGG+TGG 0.653627 6_4:-81067106 Msa0999270:CDS
TGATGAAGTCAATCTACCAA+GGG 0.661992 6_4:-81067380 Msa0999270:CDS
ACTCGGAGACTTCCTAGCAG+TGG 0.663654 6_4:+81067165 None:intergenic
AATCTACCAAGGGATAGCCA+TGG 0.679655 6_4:-81067370 Msa0999270:CDS
TGAGGACAACACCTTAGCAG+AGG 0.682039 6_4:+81067806 None:intergenic
AGCCATGGCTATGTCCATGT+TGG 0.683738 6_4:-81066068 Msa0999270:three_prime_UTR
TCTCAGTGCTACAGAAACTG+AGG 0.697538 6_4:-81069207 Msa0999270:intron
CGAGTGCACCAATTTGACGA+TGG 0.698820 6_4:-81067244 Msa0999270:CDS
TCTGGCCTCTCCAAGAACAG+GGG 0.703078 6_4:+81066772 None:intergenic
TGAGGAAGAGAAACTGATCG+AGG 0.716604 6_4:+81066419 None:intergenic
AAACTGATCGAGGTGCACGA+GGG 0.725458 6_4:+81066429 None:intergenic
AGACGAGACGAATCAAAACG+TGG 0.739618 6_4:-81066635 Msa0999270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAGTAGAAAATTATAA+AGG + chr6_4:81070839-81070858 None:intergenic 10.0%
!!! GTTAATGTGTTTTTTTTTTT+TGG - chr6_4:81066517-81066536 Msa0999270:CDS 15.0%
!! TTTCATAATTAGAAATAGAA+TGG - chr6_4:81066903-81066922 Msa0999270:CDS 15.0%
!! TTGAAATATTCATAATCTTA+GGG + chr6_4:81067019-81067038 None:intergenic 15.0%
!!! TTTGAAATATTCATAATCTT+AGG + chr6_4:81067020-81067039 None:intergenic 15.0%
!! AGATTATGAATATTTCAAAT+TGG - chr6_4:81067021-81067040 Msa0999270:CDS 15.0%
!!! ACTATTTTCTTAATTTAACT+TGG - chr6_4:81067433-81067452 Msa0999270:CDS 15.0%
!!! TTTTAAATTTCTATAAGAGA+TGG + chr6_4:81067737-81067756 None:intergenic 15.0%
!! ATAGAAATTTAAAAGTCATA+TGG - chr6_4:81067743-81067762 Msa0999270:intron 15.0%
!! AAACTAAAAAGTAAATGAAA+TGG + chr6_4:81067847-81067866 None:intergenic 15.0%
!! ATTATAAGAATAATGATTGA+TGG - chr6_4:81068111-81068130 Msa0999270:CDS 15.0%
!!! AAAATTATTCATTTTGTAGT+TGG - chr6_4:81068330-81068349 Msa0999270:intron 15.0%
!! TATGTATAATTGTAATGATA+TGG + chr6_4:81068775-81068794 None:intergenic 15.0%
!!! GAAGATTTTTGTTTTAATAT+AGG + chr6_4:81070031-81070050 None:intergenic 15.0%
!! AGAAAGATTAATGACTTAAA+TGG + chr6_4:81065896-81065915 None:intergenic 20.0%
!! ATTGAAATGTAGTTATGATT+CGG - chr6_4:81066197-81066216 Msa0999270:three_prime_UTR 20.0%
!!! TTAATTTTGAAGTAAATCGT+TGG - chr6_4:81066243-81066262 Msa0999270:three_prime_UTR 20.0%
!! TATGAAATTGTTGCAATTTA+TGG - chr6_4:81066737-81066756 Msa0999270:CDS 20.0%
!!! AATGGATTATGAATATGTTT+TGG - chr6_4:81066854-81066873 Msa0999270:CDS 20.0%
!! ATTAATCTAAACAAAACAGT+GGG + chr6_4:81066958-81066977 None:intergenic 20.0%
!! ATAGTAAGTGGTTAATTATA+GGG + chr6_4:81067077-81067096 None:intergenic 20.0%
!! TAGTAAGTTGTTAAACTATA+AGG + chr6_4:81067109-81067128 None:intergenic 20.0%
!! TTAACAACTTACTATTAATG+TGG - chr6_4:81067115-81067134 Msa0999270:CDS 20.0%
!! AGATTATGACTATTTCAAAA+GGG + chr6_4:81067232-81067251 None:intergenic 20.0%
!!! TAGTCTTTTGTTTAATGTAT+TGG - chr6_4:81067303-81067322 Msa0999270:CDS 20.0%
!!! ACTTGTGAGAATTTTAAATT+TGG - chr6_4:81067387-81067406 Msa0999270:CDS 20.0%
!!! GAGGTATAAATCTATTTTAA+TGG - chr6_4:81067583-81067602 Msa0999270:CDS 20.0%
!!! TGTAACTTTTTTTATTTCTC+AGG - chr6_4:81067624-81067643 Msa0999270:intron 20.0%
!!! GTAACTTTTTTTATTTCTCA+GGG - chr6_4:81067625-81067644 Msa0999270:intron 20.0%
!!! TAACTTTTTTTATTTCTCAG+GGG - chr6_4:81067626-81067645 Msa0999270:intron 20.0%
!! TCATAAATAGTGATTTAGAA+TGG + chr6_4:81067888-81067907 None:intergenic 20.0%
!! TAGACTCTATCTAATTATAA+CGG - chr6_4:81068082-81068101 Msa0999270:CDS 20.0%
!!! TGTTTTAATATCTTTTACAG+TGG - chr6_4:81068584-81068603 Msa0999270:intron 20.0%
!! AAAACTAATAGAACAATGTA+AGG + chr6_4:81068992-81069011 None:intergenic 20.0%
!! ATCAATCATGTAAATAATGA+GGG + chr6_4:81069063-81069082 None:intergenic 20.0%
!! AATCAATCATGTAAATAATG+AGG + chr6_4:81069064-81069083 None:intergenic 20.0%
!! AATGTAAGCATATGTTAAAA+TGG + chr6_4:81069121-81069140 None:intergenic 20.0%
!!! CAAATGTATTTTATTGGTAT+TGG + chr6_4:81069156-81069175 None:intergenic 20.0%
!!! TTAGAATTAGGTTTTACATA+AGG + chr6_4:81069779-81069798 None:intergenic 20.0%
!!! TTTTAATATAGGAAATTCTC+TGG + chr6_4:81070020-81070039 None:intergenic 20.0%
!! TATTAAAACAAAAATCTTCG+AGG - chr6_4:81070032-81070051 Msa0999270:intron 20.0%
!!! TTTTAATCTGATGTACTATT+AGG - chr6_4:81070596-81070615 Msa0999270:intron 20.0%
!! TTTAATCTGATGTACTATTA+GGG - chr6_4:81070597-81070616 Msa0999270:intron 20.0%
! TTGTTAATGTAGTTATGATG+AGG - chr6_4:81066360-81066379 Msa0999270:CDS 25.0%
!!! AAGTTTTTGAAGAACGATAT+TGG - chr6_4:81066616-81066635 Msa0999270:CDS 25.0%
!! ACTTGATTTTGTTGAATTTG+TGG - chr6_4:81066691-81066710 Msa0999270:CDS 25.0%
! AGTTATGTGAGACTATTATA+TGG - chr6_4:81066764-81066783 Msa0999270:CDS 25.0%
! GATTAATCTAAACAAAACAG+TGG + chr6_4:81066959-81066978 None:intergenic 25.0%
! ATTCTATTAAACTGTCAAGT+TGG - chr6_4:81067050-81067069 Msa0999270:CDS 25.0%
! GATAGTAAGTGGTTAATTAT+AGG + chr6_4:81067078-81067097 None:intergenic 25.0%
! TTAACCACTTACTATCAATT+AGG - chr6_4:81067082-81067101 Msa0999270:CDS 25.0%
! TCAGTATGTGGTTAAATATA+GGG + chr6_4:81067142-81067161 None:intergenic 25.0%
! ATCAGTATGTGGTTAAATAT+AGG + chr6_4:81067143-81067162 None:intergenic 25.0%
!! AAATTGATAGTATCAGTATG+TGG + chr6_4:81067154-81067173 None:intergenic 25.0%
! ATCCTTCTTAGATTATGTTA+GGG + chr6_4:81067180-81067199 None:intergenic 25.0%
! AATCCTTCTTAGATTATGTT+AGG + chr6_4:81067181-81067200 None:intergenic 25.0%
! GAGATTATGACTATTTCAAA+AGG + chr6_4:81067233-81067252 None:intergenic 25.0%
! TTTCTTCTTCATTTGAATCA+TGG - chr6_4:81067653-81067672 Msa0999270:intron 25.0%
! ATTAGAAAACCACCAAAAAA+AGG + chr6_4:81067780-81067799 None:intergenic 25.0%
! CAAATAGGCTTTCTTATAAT+TGG - chr6_4:81068019-81068038 Msa0999270:intron 25.0%
!!! ACTGTTTTGATGTCATATAA+TGG - chr6_4:81068204-81068223 Msa0999270:intron 25.0%
!!! TTGTCTTATTTATTTTGAGC+TGG - chr6_4:81068382-81068401 Msa0999270:intron 25.0%
! ATGTAAATAATGAGGGAAAA+CGG + chr6_4:81069056-81069075 None:intergenic 25.0%
!! CACAAGCAAATGTATTTTAT+TGG + chr6_4:81069162-81069181 None:intergenic 25.0%
! ATAAAAAAGACGAAGAAGAA+AGG - chr6_4:81070188-81070207 Msa0999270:CDS 25.0%
! TAAAAAAGACGAAGAAGAAA+GGG - chr6_4:81070189-81070208 Msa0999270:CDS 25.0%
!!! TCAGTCACCATTTTTATTAA+TGG - chr6_4:81070740-81070759 Msa0999270:five_prime_UTR 25.0%
! ATTGCCACCATTAATAAAAA+TGG + chr6_4:81070750-81070769 None:intergenic 25.0%
CGAAGAAGAAGAAAGAAAAA+AGG + chr6_4:81065920-81065939 None:intergenic 30.0%
AAAAAAATCGAACCATTTCG+CGG + chr6_4:81066112-81066131 None:intergenic 30.0%
! TGTAGTTATGATGAGGTTTT+AGG - chr6_4:81066367-81066386 Msa0999270:CDS 30.0%
CGATTTACTTCAAAATTCGA+AGG + chr6_4:81066410-81066429 None:intergenic 30.0%
!! TGATTAAGTTGACGAAGAAT+CGG - chr6_4:81066557-81066576 Msa0999270:CDS 30.0%
! ATTCGAGACTTTGTTTGATT+TGG - chr6_4:81066879-81066898 Msa0999270:CDS 30.0%
AAAATCAGGGACTAATTTAG+TGG + chr6_4:81066981-81067000 None:intergenic 30.0%
AGTAAAATTTGACAGAGTCA+GGG - chr6_4:81067205-81067224 Msa0999270:CDS 30.0%
TAAAATTCTCACAAGTCCTA+AGG + chr6_4:81067383-81067402 None:intergenic 30.0%
!! TATTCATGAGATGGTTTTAC+AGG - chr6_4:81067460-81067479 Msa0999270:CDS 30.0%
ACAAGATGTCAATGTTAACT+CGG + chr6_4:81067501-81067520 None:intergenic 30.0%
!! CTTGTTATGATTTTGTTGAG+TGG - chr6_4:81067516-81067535 Msa0999270:CDS 30.0%
! TAATGGTTATGCTTTAGATG+TGG - chr6_4:81067600-81067619 Msa0999270:intron 30.0%
! AATGGTTATGCTTTAGATGT+GGG - chr6_4:81067601-81067620 Msa0999270:intron 30.0%
TAAATTCACATAGGAAGACA+AGG + chr6_4:81067819-81067838 None:intergenic 30.0%
ATGGAACACTAAATTCACAT+AGG + chr6_4:81067828-81067847 None:intergenic 30.0%
AATTGGAATTTCAACTCTCA+AGG - chr6_4:81068036-81068055 Msa0999270:intron 30.0%
AGTTCAGAAATGTGAAAGAA+AGG - chr6_4:81068145-81068164 Msa0999270:CDS 30.0%
! CCTACGGAATGAATAATTTT+GGG + chr6_4:81068171-81068190 None:intergenic 30.0%
! ACCTACGGAATGAATAATTT+TGG + chr6_4:81068172-81068191 None:intergenic 30.0%
!!! AGTAAGTTTTGTTCTACCTA+CGG + chr6_4:81068187-81068206 None:intergenic 30.0%
! ATCGAGAATATAGAGTGTTA+GGG + chr6_4:81068423-81068442 None:intergenic 30.0%
! TATCGAGAATATAGAGTGTT+AGG + chr6_4:81068424-81068443 None:intergenic 30.0%
TCGATAATTCTTGATACGAA+TGG - chr6_4:81068438-81068457 Msa0999270:intron 30.0%
CAAATATTTCAGGAGAGATA+CGG - chr6_4:81068695-81068714 Msa0999270:intron 30.0%
AGAATGTTATGTCAATCAAG+AGG - chr6_4:81068727-81068746 Msa0999270:intron 30.0%
! TTCGGAGTTTTCAATAAAGT+GGG - chr6_4:81068909-81068928 Msa0999270:intron 30.0%
CGGTAACTATATCAAGAATT+GGG + chr6_4:81069036-81069055 None:intergenic 30.0%
ACGGTAACTATATCAAGAAT+TGG + chr6_4:81069037-81069056 None:intergenic 30.0%
TAAAATACATTTGCTTGTGC+AGG - chr6_4:81069163-81069182 Msa0999270:intron 30.0%
AAAATACATTTGCTTGTGCA+GGG - chr6_4:81069164-81069183 Msa0999270:intron 30.0%
ATAAATCTGACCATTCAGTT+GGG - chr6_4:81069198-81069217 Msa0999270:intron 30.0%
ATGGTGATTTACATGATAGA+AGG - chr6_4:81069546-81069565 Msa0999270:intron 30.0%
TGGTGATTTACATGATAGAA+GGG - chr6_4:81069547-81069566 Msa0999270:intron 30.0%
! GAATTAGGTTTTACATAAGG+TGG + chr6_4:81069776-81069795 None:intergenic 30.0%
TCTTCACATATTGACAATGA+TGG - chr6_4:81069833-81069852 Msa0999270:intron 30.0%
! GATGTATTGAAGGATTTGTT+GGG + chr6_4:81069862-81069881 None:intergenic 30.0%
TGATGTATTGAAGGATTTGT+TGG + chr6_4:81069863-81069882 None:intergenic 30.0%
! TAATTCTGAACATGATTTGC+AGG - chr6_4:81069931-81069950 Msa0999270:intron 30.0%
CATCGTCAAACAAAATTTGT+AGG + chr6_4:81070162-81070181 None:intergenic 30.0%
AGCAGCTAAATCATCATAAT+CGG + chr6_4:81070479-81070498 None:intergenic 30.0%
ATTATGATGATTTAGCTGCT+AGG - chr6_4:81070479-81070498 Msa0999270:intron 30.0%
! GATTGATAATATTTCAGCTC+TGG + chr6_4:81070683-81070702 None:intergenic 30.0%
GAAATATTATCAATCAGCCA+TGG - chr6_4:81070688-81070707 Msa0999270:CDS 30.0%
!! GTCACCATTTTTATTAATGG+TGG - chr6_4:81070743-81070762 Msa0999270:five_prime_UTR 30.0%
! AACACTTTTACACTCATACA+AGG + chr6_4:81070799-81070818 None:intergenic 30.0%
AGAGAAAGAGAACTAAGTAG+TGG + chr6_4:81065950-81065969 None:intergenic 35.0%
AAGCATAGTTGAAGATCGAT+CGG + chr6_4:81066064-81066083 None:intergenic 35.0%
GGATTGGATGTTAATGCTTA+TGG - chr6_4:81066655-81066674 Msa0999270:CDS 35.0%
TGGATGTTAATGCTTATGGA+AGG - chr6_4:81066659-81066678 Msa0999270:CDS 35.0%
GGATGTTAATGCTTATGGAA+GGG - chr6_4:81066660-81066679 Msa0999270:CDS 35.0%
CGATTGATATAGTTATGCCT+TGG - chr6_4:81066790-81066809 Msa0999270:CDS 35.0%
ATCAGTCAAATTCAAGACCA+AGG + chr6_4:81066810-81066829 None:intergenic 35.0%
ACTGATGATACTGTTAGTCA+AGG - chr6_4:81066824-81066843 Msa0999270:CDS 35.0%
GTTAGTCAAGGAATGTAGAA+TGG - chr6_4:81066836-81066855 Msa0999270:CDS 35.0%
CTATGCGTTGTACAAAATCA+GGG + chr6_4:81066994-81067013 None:intergenic 35.0%
! AGGACCTAATTGATAGTAAG+TGG + chr6_4:81067089-81067108 None:intergenic 35.0%
GTCCCTAACATAATCTAAGA+AGG - chr6_4:81067175-81067194 Msa0999270:CDS 35.0%
GAGTAAAATTTGACAGAGTC+AGG - chr6_4:81067204-81067223 Msa0999270:CDS 35.0%
GAATCGATAATAGAGACCTT+AGG - chr6_4:81067364-81067383 Msa0999270:CDS 35.0%
CTTGGATCATATTCATGAGA+TGG - chr6_4:81067451-81067470 Msa0999270:CDS 35.0%
ATTGATACAATCAACATGCC+AGG - chr6_4:81067682-81067701 Msa0999270:intron 35.0%
TCTATACAGTATATGAAGCC+TGG + chr6_4:81067703-81067722 None:intergenic 35.0%
!!! GTCTAACCACTTCCTTTTTT+TGG - chr6_4:81067765-81067784 Msa0999270:intron 35.0%
!!! TAACCACTTCCTTTTTTTGG+TGG - chr6_4:81067768-81067787 Msa0999270:intron 35.0%
AAACCACCAAAAAAAGGAAG+TGG + chr6_4:81067774-81067793 None:intergenic 35.0%
GCATACAACTTTGAGCAAAT+AGG - chr6_4:81068004-81068023 Msa0999270:intron 35.0%
CCCAAAATTATTCATTCCGT+AGG - chr6_4:81068168-81068187 Msa0999270:CDS 35.0%
ATTCTTGATACGAATGGAAC+AGG - chr6_4:81068444-81068463 Msa0999270:intron 35.0%
TTCTTGATACGAATGGAACA+GGG - chr6_4:81068445-81068464 Msa0999270:intron 35.0%
CAGCATTTCACATGAACTAT+TGG + chr6_4:81068484-81068503 None:intergenic 35.0%
GCAATTTAATCAGTCAGTTC+AGG + chr6_4:81068811-81068830 None:intergenic 35.0%
GTTGATGCAAGAGATTTCTT+CGG - chr6_4:81068891-81068910 Msa0999270:intron 35.0%
! CTTCGGAGTTTTCAATAAAG+TGG - chr6_4:81068908-81068927 Msa0999270:intron 35.0%
! ACTCCAAAGATTTTGAACTG+AGG - chr6_4:81068932-81068951 Msa0999270:intron 35.0%
CATCCTCAGTTCAAAATCTT+TGG + chr6_4:81068938-81068957 None:intergenic 35.0%
AATAGAACAATGTAAGGCTG+AGG + chr6_4:81068986-81069005 None:intergenic 35.0%
! CATGATTGATTTAGTCATCG+AGG - chr6_4:81069073-81069092 Msa0999270:intron 35.0%
!!! CGAGGTTTTTGTTTTCCTTT+CGG - chr6_4:81069091-81069110 Msa0999270:intron 35.0%
!!! GAGGTTTTTGTTTTCCTTTC+GGG - chr6_4:81069092-81069111 Msa0999270:intron 35.0%
TGTTAAAATGGTTTCCCGAA+AGG + chr6_4:81069109-81069128 None:intergenic 35.0%
! GGTCAGATTTATGAGTTTTG+TGG + chr6_4:81069190-81069209 None:intergenic 35.0%
CATAAATCTGACCATTCAGT+TGG - chr6_4:81069197-81069216 Msa0999270:intron 35.0%
AAAAGTCCTGACCATTCTAA+CGG - chr6_4:81069257-81069276 Msa0999270:CDS 35.0%
!! TTTTCAGGGAGCTTAGATTT+GGG + chr6_4:81069347-81069366 None:intergenic 35.0%
!!! TTTTTCAGGGAGCTTAGATT+TGG + chr6_4:81069348-81069367 None:intergenic 35.0%
AAATCTAAGCTCCCTGAAAA+AGG - chr6_4:81069347-81069366 Msa0999270:intron 35.0%
!! TTGGCTTGAATCCTTTTTCA+GGG + chr6_4:81069361-81069380 None:intergenic 35.0%
!!! ATTGGCTTGAATCCTTTTTC+AGG + chr6_4:81069362-81069381 None:intergenic 35.0%
ACTTCATCATACCTAGTGAT+TGG + chr6_4:81069380-81069399 None:intergenic 35.0%
ATGATGAAGTCAATCTACCA+AGG - chr6_4:81069390-81069409 Msa0999270:intron 35.0%
TGATGAAGTCAATCTACCAA+GGG - chr6_4:81069391-81069410 Msa0999270:intron 35.0%
AGTATGCTAAAACCACCAAT+TGG - chr6_4:81069485-81069504 Msa0999270:intron 35.0%
GTAAATCACCATCGTCAAAT+TGG + chr6_4:81069538-81069557 None:intergenic 35.0%
GGTGATTTACATGATAGAAG+GGG - chr6_4:81069548-81069567 Msa0999270:intron 35.0%
GTGATTTACATGATAGAAGG+GGG - chr6_4:81069549-81069568 Msa0999270:intron 35.0%
!! GAACCATTTGCTGTTAATCA+TGG - chr6_4:81069662-81069681 Msa0999270:intron 35.0%
CTCTCAGAGAAAAGTTCAAA+AGG - chr6_4:81069706-81069725 Msa0999270:intron 35.0%
TCAAAAGGATGAAACTCCTA+AGG - chr6_4:81069721-81069740 Msa0999270:intron 35.0%
! TAGGTTTTACATAAGGTGGT+GGG + chr6_4:81069772-81069791 None:intergenic 35.0%
! TTAGGTTTTACATAAGGTGG+TGG + chr6_4:81069773-81069792 None:intergenic 35.0%
! CTCGTCTTGAGTTTAGAATT+AGG + chr6_4:81069791-81069810 None:intergenic 35.0%
! TCAGGCTTTTGATGTATTGA+AGG + chr6_4:81069872-81069891 None:intergenic 35.0%
CAGAATTATCCAAACCTGAT+CGG + chr6_4:81069919-81069938 None:intergenic 35.0%
AGCTTCAGCATCTTCTTTAT+TGG + chr6_4:81070095-81070114 None:intergenic 35.0%
!!! TGGTTGGCTTTTTGCTATAA+TGG + chr6_4:81070234-81070253 None:intergenic 35.0%
TCATCATAATCGGGTAAGTT+GGG + chr6_4:81070469-81070488 None:intergenic 35.0%
ATCATCATAATCGGGTAAGT+TGG + chr6_4:81070470-81070489 None:intergenic 35.0%
GCAGCTAAATCATCATAATC+GGG + chr6_4:81070478-81070497 None:intergenic 35.0%
CAATGATCACACAATTATGC+TGG + chr6_4:81070574-81070593 None:intergenic 35.0%
!! GGGTATTGATGAAGATTACA+TGG - chr6_4:81070617-81070636 Msa0999270:intron 35.0%
! AGTGTTCTGAGTAGAAATTG+AGG - chr6_4:81070813-81070832 Msa0999270:five_prime_UTR 35.0%
CCTAAACAATTACACACACT+TGG + chr6_4:81070866-81070885 None:intergenic 35.0%
CCAAGTGTGTGTAATTGTTT+AGG - chr6_4:81070863-81070882 Msa0999270:five_prime_UTR 35.0%
!! AATCGCGAAGATTCGGTTTT+CGG + chr6_4:81065982-81066001 None:intergenic 40.0%
GAACGATTCTTCAACTCAGA+AGG + chr6_4:81066027-81066046 None:intergenic 40.0%
CGATCTTCAACTATGCTTGA+CGG - chr6_4:81066066-81066085 Msa0999270:three_prime_UTR 40.0%
AGAATCGGATCGATGTGATA+AGG - chr6_4:81066572-81066591 Msa0999270:CDS 40.0%
! GAACGATATTGGTGATCTGT+TGG - chr6_4:81066627-81066646 Msa0999270:CDS 40.0%
! ATTGGTGATCTGTTGGTGAA+TGG - chr6_4:81066634-81066653 Msa0999270:CDS 40.0%
! TGATCTGTTGGTGAATGGAT+TGG - chr6_4:81066639-81066658 Msa0999270:CDS 40.0%
CCTATGCGTTGTACAAAATC+AGG + chr6_4:81066995-81067014 None:intergenic 40.0%
! CCTGATTTTGTACAACGCAT+AGG - chr6_4:81066992-81067011 Msa0999270:CDS 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr6_4:81067261-81067280 None:intergenic 40.0%
AATCCGTCCATGACTTTGTA+GGG + chr6_4:81067275-81067294 None:intergenic 40.0%
AAATCCGTCCATGACTTTGT+AGG + chr6_4:81067276-81067295 None:intergenic 40.0%
! TACAAAGTCATGGACGGATT+TGG - chr6_4:81067275-81067294 Msa0999270:CDS 40.0%
GTGCTTCAACACAAAATCAC+AGG + chr6_4:81067543-81067562 None:intergenic 40.0%
TTTCCAGCTGAATATAGCTC+CGG - chr6_4:81067952-81067971 Msa0999270:intron 40.0%
TGCAATATGTATGAAGACCC+CGG + chr6_4:81067974-81067993 None:intergenic 40.0%
TCTTGATACGAATGGAACAG+GGG - chr6_4:81068446-81068465 Msa0999270:intron 40.0%
TCTCCTGAAATATTTGCCGA+AGG + chr6_4:81068691-81068710 None:intergenic 40.0%
! GAATCCGAAGTCTTTTACCT+TGG - chr6_4:81068855-81068874 Msa0999270:intron 40.0%
TGCTCCAAGGTAAAAGACTT+CGG + chr6_4:81068862-81068881 None:intergenic 40.0%
GATGTCAAAATCCTCTGCTA+AGG - chr6_4:81068954-81068973 Msa0999270:intron 40.0%
GTAATGGTTTCCCAACTGAA+TGG + chr6_4:81069211-81069230 None:intergenic 40.0%
TCAGTTGGGAAACCATTACA+AGG - chr6_4:81069212-81069231 Msa0999270:CDS 40.0%
ATCTCAGACTTGCCTTGTAA+TGG + chr6_4:81069227-81069246 None:intergenic 40.0%
GCACAAATATCGGAATGGTA+AGG - chr6_4:81069283-81069302 Msa0999270:CDS 40.0%
AAGGATTCAAGCCAATCACT+AGG - chr6_4:81069366-81069385 Msa0999270:intron 40.0%
! AGCTCTTCTTTTCCTAGCAA+CGG + chr6_4:81069431-81069450 None:intergenic 40.0%
GAAGAGCTTACTTCTCAGAA+AGG - chr6_4:81069443-81069462 Msa0999270:intron 40.0%
!! CTTCTCAGAAAGGTGTCTAT+TGG - chr6_4:81069453-81069472 Msa0999270:intron 40.0%
!! TCAGAAAGGTGTCTATTGGA+AGG - chr6_4:81069457-81069476 Msa0999270:intron 40.0%
!! AAAGGTGTCTATTGGAAGGA+GGG - chr6_4:81069461-81069480 Msa0999270:intron 40.0%
TGAGAAGAACATCCAATTGG+TGG + chr6_4:81069500-81069519 None:intergenic 40.0%
ACCAATTGGATGTTCTTCTC+AGG - chr6_4:81069499-81069518 Msa0999270:intron 40.0%
TCCTGAGAAGAACATCCAAT+TGG + chr6_4:81069503-81069522 None:intergenic 40.0%
GATTGAAATCCTGCATGACT+CGG + chr6_4:81069626-81069645 None:intergenic 40.0%
CCACCATGATTAACAGCAAA+TGG + chr6_4:81069668-81069687 None:intergenic 40.0%
!! CCATTTGCTGTTAATCATGG+TGG - chr6_4:81069665-81069684 Msa0999270:intron 40.0%
! CTCTGAGAGTTATCAAGATC+AGG + chr6_4:81069695-81069714 None:intergenic 40.0%
!!! TTTTACATAAGGTGGTGGGA+TGG + chr6_4:81069768-81069787 None:intergenic 40.0%
ACTACAGAGAAAATCCGATC+AGG - chr6_4:81069902-81069921 Msa0999270:intron 40.0%
AGAGAAAATCCGATCAGGTT+TGG - chr6_4:81069907-81069926 Msa0999270:intron 40.0%
AAGTCGTCATGCACATCAAA+TGG - chr6_4:81070288-81070307 Msa0999270:intron 40.0%
CATGCACATCAAATGGATGA+TGG - chr6_4:81070295-81070314 Msa0999270:intron 40.0%
ACCTGATAAGACACCAGATA+TGG - chr6_4:81070318-81070337 Msa0999270:intron 40.0%
ACCATATCTGGTGTCTTATC+AGG + chr6_4:81070322-81070341 None:intergenic 40.0%
CAGATAGATCAAAAGAAGCC+CGG - chr6_4:81070434-81070453 Msa0999270:intron 40.0%
ACAATTGCACATCACCAACA+TGG + chr6_4:81070720-81070739 None:intergenic 40.0%
ACTATGCTTGACGGCTTACT+CGG - chr6_4:81066075-81066094 Msa0999270:three_prime_UTR 45.0%
ATCGGATCGATGTGATAAGG+AGG - chr6_4:81066575-81066594 Msa0999270:CDS 45.0%
TCGATGTGATAAGGAGGAAG+AGG - chr6_4:81066581-81066600 Msa0999270:CDS 45.0%
!! GAGATGGTTTTACAGGCTGA+AGG - chr6_4:81067467-81067486 Msa0999270:CDS 45.0%
! TCAGTTTCTGTAGCACTGAG+AGG + chr6_4:81067565-81067584 None:intergenic 45.0%
TCTCAGTGCTACAGAAACTG+AGG - chr6_4:81067564-81067583 Msa0999270:CDS 45.0%
GGAAGACAAGGAGAAAAGTC+AGG + chr6_4:81067807-81067826 None:intergenic 45.0%
TTCCAGCTGAATATAGCTCC+GGG - chr6_4:81067953-81067972 Msa0999270:intron 45.0%
TGAGCTGGTCATCTGAGTAT+TGG - chr6_4:81068397-81068416 Msa0999270:intron 45.0%
CTTGATACGAATGGAACAGG+GGG - chr6_4:81068447-81068466 Msa0999270:intron 45.0%
CGACCTTCGGCAAATATTTC+AGG - chr6_4:81068685-81068704 Msa0999270:intron 45.0%
! GTCTTTTACCTTGGAGCAGA+AGG - chr6_4:81068864-81068883 Msa0999270:intron 45.0%
TTACCTTGGAGCAGAAGGTT+CGG - chr6_4:81068869-81068888 Msa0999270:intron 45.0%
ATTTGTGCCCACCGTTAGAA+TGG + chr6_4:81069271-81069290 None:intergenic 45.0%
CTAACGGTGGGCACAAATAT+CGG - chr6_4:81069273-81069292 Msa0999270:CDS 45.0%
AATCTACCAAGGGATAGCCA+TGG - chr6_4:81069401-81069420 Msa0999270:intron 45.0%
!! GAAAGGTGTCTATTGGAAGG+AGG - chr6_4:81069460-81069479 Msa0999270:intron 45.0%
CTGTAGTACGGCTTTACCTT+AGG + chr6_4:81069740-81069759 None:intergenic 45.0%
GGGATGGCATTACTGTAGTA+CGG + chr6_4:81069752-81069771 None:intergenic 45.0%
GAGAAAGAATCCCCTGTTCT+TGG - chr6_4:81069989-81070008 Msa0999270:intron 45.0%
AACAAAAATCTTCGAGGCGC+AGG - chr6_4:81070038-81070057 Msa0999270:intron 45.0%
CTGAAGCTGCGAGAAAATCA+AGG - chr6_4:81070107-81070126 Msa0999270:intron 45.0%
AGACGAGACGAATCAAAACG+TGG - chr6_4:81070136-81070155 Msa0999270:CDS 45.0%
! TTCTCAGGCACATTGATGGT+TGG + chr6_4:81070250-81070269 None:intergenic 45.0%
TGCTTTCTCAGGCACATTGA+TGG + chr6_4:81070254-81070273 None:intergenic 45.0%
TGCCTGAGAAAGCAAGAAGA+AGG - chr6_4:81070260-81070279 Msa0999270:intron 45.0%
GACCTTCTTCTTGCTTTCTC+AGG + chr6_4:81070265-81070284 None:intergenic 45.0%
TGAGGAAGAGAAACTGATCG+AGG + chr6_4:81070355-81070374 None:intergenic 45.0%
! CGGGCTTCTTTTGATCTATC+TGG + chr6_4:81070436-81070455 None:intergenic 45.0%
TGATTTAGCTGCTAGGCTTG+CGG - chr6_4:81070486-81070505 Msa0999270:intron 45.0%
TCTCCCTTATGTTCCTCTCA+AGG + chr6_4:81070512-81070531 None:intergenic 45.0%
CGCGAAGAATCGCGAAGATT+CGG + chr6_4:81065989-81066008 None:intergenic 50.0%
!! GAGAGCACCCTACAAAGTCA+TGG - chr6_4:81067265-81067284 Msa0999270:CDS 50.0%
GCACCCTACAAAGTCATGGA+CGG - chr6_4:81067269-81067288 Msa0999270:CDS 50.0%
TCCAGCTGAATATAGCTCCG+GGG - chr6_4:81067954-81067973 Msa0999270:intron 50.0%
! CTTTTACAGTGGATGCCCTG+AGG - chr6_4:81068595-81068614 Msa0999270:intron 50.0%
TAGCTTCCCTGCATTCCTCA+GGG + chr6_4:81068613-81068632 None:intergenic 50.0%
ATAGCTTCCCTGCATTCCTC+AGG + chr6_4:81068614-81068633 None:intergenic 50.0%
TACCAGAGTTACGCGACCTT+CGG - chr6_4:81068672-81068691 Msa0999270:intron 50.0%
TGAGGACAACACCTTAGCAG+AGG + chr6_4:81068968-81068987 None:intergenic 50.0%
AGTCCTGACCATTCTAACGG+TGG - chr6_4:81069260-81069279 Msa0999270:CDS 50.0%
GTCCTGACCATTCTAACGGT+GGG - chr6_4:81069261-81069280 Msa0999270:CDS 50.0%
GGTGGGCACAAATATCGGAA+TGG - chr6_4:81069278-81069297 Msa0999270:CDS 50.0%
!! TTCCTAGCAACGGATTGCCA+TGG + chr6_4:81069421-81069440 None:intergenic 50.0%
CGAGTGCACCAATTTGACGA+TGG - chr6_4:81069527-81069546 Msa0999270:intron 50.0%
TCTGTAGTAGAAGCAGCGTC+AGG + chr6_4:81069890-81069909 None:intergenic 50.0%
ACTCAGTCGAGCATGTCTAG+TGG + chr6_4:81069957-81069976 None:intergenic 50.0%
AGAATCCCCTGTTCTTGGAG+AGG - chr6_4:81069994-81070013 Msa0999270:intron 50.0%
AAACTGATCGAGGTGCACGA+GGG + chr6_4:81070345-81070364 None:intergenic 50.0%
! TAAGTTGGGATGCACATGCC+GGG + chr6_4:81070455-81070474 None:intergenic 50.0%
! GTAAGTTGGGATGCACATGC+CGG + chr6_4:81070456-81070475 None:intergenic 50.0%
CGGCCTTGAGAGGAACATAA+GGG - chr6_4:81070506-81070525 Msa0999270:intron 50.0%
AGCCATGGCTATGTCCATGT+TGG - chr6_4:81070703-81070722 Msa0999270:exon 50.0%
CACCAACATGGACATAGCCA+TGG + chr6_4:81070708-81070727 None:intergenic 50.0%
ACCCCGGAGCTATATTCAGC+TGG + chr6_4:81067958-81067977 None:intergenic 55.0%
TGGATGCCCTGAGGAATGCA+GGG - chr6_4:81068604-81068623 Msa0999270:intron 55.0%
CAACCGAACCTTCTGCTCCA+AGG + chr6_4:81068875-81068894 None:intergenic 55.0%
TGCCCACCGTTAGAATGGTC+AGG + chr6_4:81069266-81069285 None:intergenic 55.0%
GGATTGCCATGGCTATCCCT+TGG + chr6_4:81069410-81069429 None:intergenic 55.0%
AGCCATGGCAATCCGTTGCT+AGG - chr6_4:81069416-81069435 Msa0999270:intron 55.0%
TGTCCGGGGTTTCTCTCACA+CGG + chr6_4:81069583-81069602 None:intergenic 55.0%
TTCCTAGCAGTGGCAGTGTC+CGG + chr6_4:81069599-81069618 None:intergenic 55.0%
ACTCGGAGACTTCCTAGCAG+TGG + chr6_4:81069609-81069628 None:intergenic 55.0%
AGGAAGTCTCCGAGTCATGC+AGG - chr6_4:81069614-81069633 Msa0999270:intron 55.0%
TCTGGCCTCTCCAAGAACAG+GGG + chr6_4:81070002-81070021 None:intergenic 55.0%
CTCTGGCCTCTCCAAGAACA+GGG + chr6_4:81070003-81070022 None:intergenic 55.0%
TCTCTGGCCTCTCCAAGAAC+AGG + chr6_4:81070004-81070023 None:intergenic 55.0%
GAAACTGATCGAGGTGCACG+AGG + chr6_4:81070346-81070365 None:intergenic 55.0%
GCGGCCTTGAGAGGAACATA+AGG - chr6_4:81070505-81070524 Msa0999270:intron 55.0%
CTTGACGGCTTACTCGGTCG+TGG - chr6_4:81066081-81066100 Msa0999270:three_prime_UTR 60.0%
GTCGTGGATTCGCCGCGAAA+TGG - chr6_4:81066097-81066116 Msa0999270:three_prime_UTR 60.0%
GTGGATGCCCTGAGGAATGC+AGG - chr6_4:81068603-81068622 Msa0999270:intron 60.0%
TGCCGAAGGTCGCGTAACTC+TGG + chr6_4:81068677-81068696 None:intergenic 60.0%
CACCCGTGTGAGAGAAACCC+CGG - chr6_4:81069577-81069596 Msa0999270:intron 60.0%
GTCCGGGGTTTCTCTCACAC+GGG + chr6_4:81069582-81069601 None:intergenic 60.0%
TCCTAGCAGTGGCAGTGTCC+GGG + chr6_4:81069598-81069617 None:intergenic 60.0%
GGCGCAGGCACTCGAAATCA+CGG - chr6_4:81070053-81070072 Msa0999270:intron 60.0%
GGTGCACGAGGGACCATATC+TGG + chr6_4:81070334-81070353 None:intergenic 60.0%
CGGGGTTTCTCTCACACGGG+TGG + chr6_4:81069579-81069598 None:intergenic 65.0%
CCTAGCAGTGGCAGTGTCCG+GGG + chr6_4:81069597-81069616 None:intergenic 65.0%
GCTAGGCTTGCGGCCTTGAG+AGG - chr6_4:81070496-81070515 Msa0999270:intron 65.0%
CCCCGGACACTGCCACTGCT+AGG - chr6_4:81069594-81069613 Msa0999270:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 81065891 81070902 81065891 ID=Msa0999270;Name=Msa0999270
chr6_4 mRNA 81065891 81070902 81065891 ID=Msa0999270-mRNA-1;Parent=Msa0999270;Name=Msa0999270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=187|1|1|1|1|1|6|377|632
chr6_4 exon 81065891 81067608 81065891 ID=Msa0999270-mRNA-1:exon:15465;Parent=Msa0999270-mRNA-1
chr6_4 exon 81067818 81067952 81067818 ID=Msa0999270-mRNA-1:exon:15464;Parent=Msa0999270-mRNA-1
chr6_4 exon 81068045 81068189 81068045 ID=Msa0999270-mRNA-1:exon:15463;Parent=Msa0999270-mRNA-1
chr6_4 exon 81069208 81069311 81069208 ID=Msa0999270-mRNA-1:exon:15462;Parent=Msa0999270-mRNA-1
chr6_4 exon 81070112 81070244 81070112 ID=Msa0999270-mRNA-1:exon:15461;Parent=Msa0999270-mRNA-1
chr6_4 exon 81070675 81070902 81070675 ID=Msa0999270-mRNA-1:exon:15460;Parent=Msa0999270-mRNA-1
chr6_4 five_prime_UTR 81070716 81070902 81070716 ID=Msa0999270-mRNA-1:five_prime_utr;Parent=Msa0999270-mRNA-1
chr6_4 CDS 81070675 81070715 81070675 ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1
chr6_4 CDS 81070112 81070244 81070112 ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1
chr6_4 CDS 81069208 81069311 81069208 ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1
chr6_4 CDS 81068045 81068189 81068045 ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1
chr6_4 CDS 81067818 81067952 81067818 ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1
chr6_4 CDS 81066268 81067608 81066268 ID=Msa0999270-mRNA-1:cds;Parent=Msa0999270-mRNA-1
chr6_4 three_prime_UTR 81065891 81066267 81065891 ID=Msa0999270-mRNA-1:three_prime_utr;Parent=Msa0999270-mRNA-1
Gene Sequence

>Msa0999270

ATGCTTGACGGCTTACTCGGTCGTGGATTCGCCGCGAAATGTAAGTCGTTGATTAAGTTGACGAAGAATCGGATCGATGTGATAAGGAGGAAGAGGAAAGCGACAGAGAAGTTTTTGAAGAACGATATTGGTGATCTGTTGGTGAATGGATTGGATGTTAATGCTTATGGAAGGGCTGAAGGACTCATTGCCGAGTTAACATTGACATCTTGTTATGATTTTGTTGAGTGGACCTGTGATTTTGTGTTGAAGCACCTCTCAGTGCTACAGAAACTGAGTGGATGCCCTGAGGAATGCAGGGAAGCTATAGCGTGTCTGATTATTGCTGCAGCAAGATTTTCTGATCTACCAGAGTTACGCGACCTTCGGCAAATATTTCAGGAGAGATACGGAAACTCTCTAGAATGTTATGTCAATCAAGAGTTTGCTGCAAATTTGAATCCGAAGTCTTTTACCTTGGAGCAGAAGGTTCGGTTGATGCAAGAGATTTCTTCGGAGTTTTCAATAAAGTGGGACTCCAAAGATTTTGAACTGAGGATGTCAAAATCCTCTGCTAAGGGCCACAAAACTCATAAATCTGACCATTCAGTTGGGAAACCATTACAAGGCAAGTCTGAGATTTTGTTAGATAAAAGTCCTGACCATTCTAACGGTGGGCACAAATATCGGAATGGTAAGGAAGCTGCTGTCTCAAAAGCAGATGAAAATTATCTTCATCCCAAATCTAAGCTCCCTGAAAAAGGATTCAAGCCAATCACTAGGTATGATGAAGTCAATCTACCAAGGGATAGCCATGGCAATCCGTTGCTAGGAAAAGAAGAGCTTACTTCTCAGAAAGGTGTCTATTGGAAGGAGGGTAGTATGCTAAAACCACCAATTGGATGTTCTTCTCAGGATAAGCGAGTGCACCAATTTGACGATGGTGATTTACATGATAGAAGGGGGAATGCCACCCGTGTGAGAGAAACCCCGGACACTGCCACTGCTAGGAAGTCTCCGAGTCATGCAGGATTTCAATCAAAGAACAATTTGAATGAACCATTTGCTGTTAATCATGGTGGACTACCTGATCTTGATAACTCTCAGAGAAAAGTTCAAAAGGATGAAACTCCTAAGGTAAAGCCGTACTACAGTAATGCCATCCCACCACCTTATGTAAAACCTAATTCTAAACTCAAGACGAGCACACAAAGAACTGAATTAGCATCTTCACATATTGACAATGATGGCATCCCAACAAATCCTTCAATACATCAAAAGCCTGACGCTGCTTCTACTACAGAGAAAATCCGATCAGGTTTGGATAATTCTGAACATGATTTGCAGGCCACTAGACATGCTCGACTGAGTAAACATGATTATGAGAAAGAATCCCCTGTTCTTGGAGAGGCCAGAGAATTTCCTATATTAAAACAAAAATCTTCGAGGCGCAGGCACTCGAAATCACGGTCTACACACAATGATGCCAATAAAGAAGATGCTGAAGCTGCGAGAAAATCAAGGAGCAAGAGACGAGACGAATCAAAACGTGGCCTACAAATTTTGTTTGACGATGAGAAACATAAAAAAGACGAAGAAGAAAGGGTTATAGATAGATTGCTGATCCATTATAGCAAAAAGCCAACCATCAATGTGCCTGAGAAAGCAAGAAGAAGGTCTAAAAGTCGTCATGCACATCAAATGGATGATGGACCTGATAAGACACCAGATATGGTCCCTCGTGCACCTCGATCAGTTTCTCTTCCTCACGAACAATCACAAGAGATGGAAGTCAACAAAGTGTTTACTCGAGCTGCTTCGTTTCAGCCAGATAGATCAAAAGAAGCCCGGCATGTGCATCCCAACTTACCCGATTATGATGATTTAGCTGCTAGGCTTGCGGCCTTGAGAGGAACATAA

Protein sequence

>Msa0999270

MLDGLLGRGFAAKCKSLIKLTKNRIDVIRRKRKATEKFLKNDIGDLLVNGLDVNAYGRAEGLIAELTLTSCYDFVEWTCDFVLKHLSVLQKLSGCPEECREAIACLIIAAARFSDLPELRDLRQIFQERYGNSLECYVNQEFAANLNPKSFTLEQKVRLMQEISSEFSIKWDSKDFELRMSKSSAKGHKTHKSDHSVGKPLQGKSEILLDKSPDHSNGGHKYRNGKEAAVSKADENYLHPKSKLPEKGFKPITRYDEVNLPRDSHGNPLLGKEELTSQKGVYWKEGSMLKPPIGCSSQDKRVHQFDDGDLHDRRGNATRVRETPDTATARKSPSHAGFQSKNNLNEPFAVNHGGLPDLDNSQRKVQKDETPKVKPYYSNAIPPPYVKPNSKLKTSTQRTELASSHIDNDGIPTNPSIHQKPDAASTTEKIRSGLDNSEHDLQATRHARLSKHDYEKESPVLGEAREFPILKQKSSRRRHSKSRSTHNDANKEDAEAARKSRSKRRDESKRGLQILFDDEKHKKDEEERVIDRLLIHYSKKPTINVPEKARRRSKSRHAHQMDDGPDKTPDMVPRAPRSVSLPHEQSQEMEVNKVFTRAASFQPDRSKEARHVHPNLPDYDDLAARLAALRGT*