Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812330 | XP_013454118.1 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812330 | sp|O65735|ALF_CICAR | 94.722 | 360 | 16 | 2 | 1 | 358 | 1 | 359 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812330 | I3SU63 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa0812330 | -0.804717 | 1.889110e-49 | -8.615850e-47 |
| Msa0016440 | Msa0812330 | 0.860238 | 2.374155e-63 | -8.615850e-47 |
| Msa0017420 | Msa0812330 | -0.817879 | 2.622371e-52 | -8.615850e-47 |
| Msa0051100 | Msa0812330 | -0.806972 | 6.344841e-50 | -8.615850e-47 |
| Msa0070090 | Msa0812330 | -0.816400 | 5.639737e-52 | -8.615850e-47 |
| Msa0101650 | Msa0812330 | -0.817346 | 3.458717e-52 | -8.615850e-47 |
| Msa0104360 | Msa0812330 | -0.820325 | 7.279363e-53 | -8.615850e-47 |
| Msa0104390 | Msa0812330 | -0.823714 | 1.193552e-53 | -8.615850e-47 |
| Msa0108970 | Msa0812330 | -0.805855 | 1.091039e-49 | -8.615850e-47 |
| Msa0641020 | Msa0812330 | -0.817389 | 3.381973e-52 | -8.615850e-47 |
| Msa0641030 | Msa0812330 | -0.819840 | 9.399472e-53 | -8.615850e-47 |
| Msa0656060 | Msa0812330 | 0.819992 | 8.678002e-53 | -8.615850e-47 |
| Msa0669990 | Msa0812330 | -0.813287 | 2.762148e-51 | -8.615850e-47 |
| Msa0679560 | Msa0812330 | -0.847690 | 9.861101e-60 | -8.615850e-47 |
| Msa0697600 | Msa0812330 | -0.804226 | 2.391096e-49 | -8.615850e-47 |
| Msa0709380 | Msa0812330 | 0.815176 | 1.057361e-51 | -8.615850e-47 |
| Msa0733670 | Msa0812330 | 0.831527 | 1.586684e-55 | -8.615850e-47 |
| Msa0774810 | Msa0812330 | 0.881656 | 2.001562e-70 | -8.615850e-47 |
| Msa0778580 | Msa0812330 | -0.802332 | 5.899257e-49 | -8.615850e-47 |
| Msa0812330 | Msa0849130 | -0.826055 | 3.346718e-54 | -8.615850e-47 |
| Msa0812330 | Msa0852620 | 0.863751 | 1.990924e-64 | -8.615850e-47 |
| Msa0812330 | Msa0881240 | 0.815302 | 9.911823e-52 | -8.615850e-47 |
| Msa0812330 | Msa0883350 | -0.804555 | 2.041888e-49 | -8.615850e-47 |
| Msa0812330 | Msa0883390 | -0.827695 | 1.356972e-54 | -8.615850e-47 |
| Msa0812330 | Msa0883410 | -0.826479 | 2.652825e-54 | -8.615850e-47 |
| Msa0812330 | Msa0883430 | -0.851237 | 1.011217e-60 | -8.615850e-47 |
| Msa0812330 | Msa0883660 | -0.809700 | 1.661837e-50 | -8.615850e-47 |
| Msa0812330 | Msa0883670 | -0.834715 | 2.552707e-56 | -8.615850e-47 |
| Msa0812330 | Msa0883690 | -0.820342 | 7.217221e-53 | -8.615850e-47 |
| Msa0812330 | Msa0902140 | -0.810522 | 1.105320e-50 | -8.615850e-47 |
| Msa0812330 | Msa0957800 | -0.809258 | 2.068408e-50 | -8.615850e-47 |
| Msa0812330 | Msa0957820 | -0.805051 | 1.609105e-49 | -8.615850e-47 |
| Msa0812330 | Msa0984830 | -0.805529 | 1.277544e-49 | -8.615850e-47 |
| Msa0812330 | Msa0984840 | -0.832402 | 9.650430e-56 | -8.615850e-47 |
| Msa0812330 | Msa0984850 | -0.825402 | 4.781235e-54 | -8.615850e-47 |
| Msa0812330 | Msa0985040 | -0.818788 | 1.633010e-52 | -8.615850e-47 |
| Msa0812330 | Msa1005290 | -0.810488 | 1.124405e-50 | -8.615850e-47 |
| Msa0812330 | Msa1038820 | -0.807903 | 4.025792e-50 | -8.615850e-47 |
| Msa0812330 | Msa1081530 | -0.805105 | 1.567364e-49 | -8.615850e-47 |
| Msa0812330 | Msa1089680 | -0.813001 | 3.192329e-51 | -8.615850e-47 |
| Msa0812330 | Msa1124980 | 0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0812330 | Msa1169300 | 0.814842 | 1.253726e-51 | -8.615850e-47 |
| Msa0812330 | Msa1169330 | 0.807357 | 5.257900e-50 | -8.615850e-47 |
| Msa0812330 | Msa1191390 | -0.850863 | 1.289618e-60 | -8.615850e-47 |
| Msa0812330 | Msa1199750 | -0.803879 | 2.824281e-49 | -8.615850e-47 |
| Msa0812330 | Msa1204430 | -0.810642 | 1.041258e-50 | -8.615850e-47 |
| Msa0812330 | Msa1223510 | -0.817102 | 3.924035e-52 | -8.615850e-47 |
| Msa0812330 | Msa1225040 | 0.839011 | 2.044554e-57 | -8.615850e-47 |
| Msa0812330 | Msa1232330 | -0.820166 | 7.917105e-53 | -8.615850e-47 |
| Msa0812330 | Msa1237260 | -0.818978 | 1.478145e-52 | -8.615850e-47 |
| Msa0812330 | Msa1261970 | 0.843256 | 1.567429e-58 | -8.615850e-47 |
| Msa0812330 | Msa1275340 | -0.814405 | 1.566412e-51 | -8.615850e-47 |
| Msa0812330 | Msa1311550 | -0.819956 | 8.842515e-53 | -8.615850e-47 |
| Msa0812330 | Msa1328600 | -0.824252 | 8.924742e-54 | -8.615850e-47 |
| Msa0812330 | Msa1349870 | 0.808280 | 3.346230e-50 | -8.615850e-47 |
| Msa0812330 | Msa1357720 | -0.817976 | 2.493637e-52 | -8.615850e-47 |
| Msa0812330 | Msa1360380 | -0.815313 | 9.854658e-52 | -8.615850e-47 |
| Msa0812330 | Msa1405470 | -0.804195 | 2.427418e-49 | -8.615850e-47 |
| Msa0812330 | Msa1445250 | -0.834333 | 3.185156e-56 | -8.615850e-47 |
| Msa0812330 | Msa1463510 | 0.804764 | 1.846998e-49 | -8.615850e-47 |
| Msa0121460 | Msa0812330 | -0.808859 | 2.518360e-50 | -8.615850e-47 |
| Msa0155030 | Msa0812330 | -0.801579 | 8.423814e-49 | -8.615850e-47 |
| Msa0169960 | Msa0812330 | -0.805571 | 1.251879e-49 | -8.615850e-47 |
| Msa0212490 | Msa0812330 | 0.814239 | 1.704616e-51 | -8.615850e-47 |
| Msa0225370 | Msa0812330 | -0.841546 | 4.449774e-58 | -8.615850e-47 |
| Msa0408160 | Msa0812330 | -0.800936 | 1.140665e-48 | -8.615850e-47 |
| Msa0410960 | Msa0812330 | -0.809141 | 2.191416e-50 | -8.615850e-47 |
| Msa0421390 | Msa0812330 | -0.813245 | 2.822034e-51 | -8.615850e-47 |
| Msa0439700 | Msa0812330 | -0.819076 | 1.404508e-52 | -8.615850e-47 |
| Msa0452010 | Msa0812330 | -0.802138 | 6.468057e-49 | -8.615850e-47 |
| Msa0452370 | Msa0812330 | -0.810040 | 1.404777e-50 | -8.615850e-47 |
| Msa0453220 | Msa0812330 | -0.809779 | 1.598733e-50 | -8.615850e-47 |
| Msa0256410 | Msa0812330 | -0.809359 | 1.967539e-50 | -8.615850e-47 |
| Msa0266380 | Msa0812330 | -0.843751 | 1.155691e-58 | -8.615850e-47 |
| Msa0305580 | Msa0812330 | -0.803812 | 2.915817e-49 | -8.615850e-47 |
| Msa0327150 | Msa0812330 | -0.814044 | 1.882722e-51 | -8.615850e-47 |
| Msa0339560 | Msa0812330 | -0.809119 | 2.214457e-50 | -8.615850e-47 |
| Msa0341860 | Msa0812330 | -0.839814 | 1.265170e-57 | -8.615850e-47 |
| Msa0363440 | Msa0812330 | -0.807334 | 5.319018e-50 | -8.615850e-47 |
| Msa0499580 | Msa0812330 | -0.806610 | 7.566341e-50 | -8.615850e-47 |
| Msa0503620 | Msa0812330 | -0.807978 | 3.880893e-50 | -8.615850e-47 |
| Msa0521100 | Msa0812330 | -0.801170 | 1.021865e-48 | -8.615850e-47 |
| Msa0540160 | Msa0812330 | -0.802042 | 6.767138e-49 | -8.615850e-47 |
| Msa0544930 | Msa0812330 | -0.840128 | 1.047757e-57 | -8.615850e-47 |
| Msa0545550 | Msa0812330 | 0.822497 | 2.294978e-53 | -8.615850e-47 |
| Msa0563140 | Msa0812330 | -0.808573 | 2.897718e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812330 | MtrunA17_Chr5g0429051 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| Msa0812330 | MtrunA17_Chr1g0179211 | 87.709 | 358 | 44 | 0 | 1 | 358 | 1 | 358 | 0.0 | 649 |
| Msa0812330 | MtrunA17_Chr7g0265821 | 86.034 | 358 | 50 | 0 | 1 | 358 | 1 | 358 | 0.0 | 646 |
| Msa0812330 | MtrunA17_Chr5g0447091 | 78.492 | 358 | 76 | 1 | 1 | 358 | 1 | 357 | 0.0 | 568 |
| Msa0812330 | MtrunA17_Chr5g0429031 | 93.839 | 211 | 13 | 0 | 1 | 211 | 42 | 252 | 2.90e-143 | 405 |
| Msa0812330 | MtrunA17_Chr4g0035951 | 57.102 | 352 | 146 | 4 | 8 | 358 | 53 | 400 | 5.27e-136 | 393 |
| Msa0812330 | MtrunA17_Chr4g0028361 | 57.102 | 352 | 146 | 4 | 8 | 358 | 53 | 400 | 6.01e-136 | 393 |
| Msa0812330 | MtrunA17_Chr1g0208981 | 54.494 | 356 | 157 | 4 | 4 | 358 | 40 | 391 | 4.67e-134 | 387 |
| Msa0812330 | MtrunA17_Chr5g0429021 | 97.710 | 131 | 3 | 0 | 228 | 358 | 1 | 131 | 2.20e-86 | 256 |
| Msa0812330 | MtrunA17_Chr4g0035981 | 54.812 | 239 | 103 | 4 | 121 | 358 | 6 | 240 | 1.99e-83 | 253 |
| Msa0812330 | MtrunA17_Chr7g0265811 | 67.708 | 96 | 6 | 1 | 112 | 207 | 21 | 91 | 4.76e-36 | 126 |
| Msa0812330 | MtrunA17_Chr4g0035971 | 59.091 | 88 | 36 | 0 | 8 | 95 | 51 | 138 | 3.72e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812330 | AT3G52930.1 | 87.989 | 358 | 43 | 0 | 1 | 358 | 1 | 358 | 0.0 | 648 |
| Msa0812330 | AT2G36460.1 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 643 |
| Msa0812330 | AT5G03690.2 | 86.630 | 359 | 47 | 1 | 1 | 358 | 1 | 359 | 0.0 | 621 |
| Msa0812330 | AT5G03690.1 | 87.106 | 349 | 44 | 1 | 11 | 358 | 45 | 393 | 0.0 | 607 |
| Msa0812330 | AT4G26530.1 | 76.816 | 358 | 83 | 0 | 1 | 358 | 1 | 358 | 0.0 | 566 |
| Msa0812330 | AT4G26530.3 | 76.816 | 358 | 83 | 0 | 1 | 358 | 1 | 358 | 0.0 | 566 |
| Msa0812330 | AT4G26530.2 | 76.816 | 358 | 83 | 0 | 1 | 358 | 1 | 358 | 0.0 | 566 |
| Msa0812330 | AT4G26520.1 | 71.508 | 358 | 102 | 0 | 1 | 358 | 1 | 358 | 0.0 | 521 |
| Msa0812330 | AT4G26520.3 | 71.629 | 356 | 101 | 0 | 1 | 356 | 1 | 356 | 0.0 | 517 |
| Msa0812330 | AT4G26520.2 | 71.633 | 349 | 99 | 0 | 10 | 358 | 7 | 355 | 0.0 | 509 |
| Msa0812330 | AT4G26520.4 | 71.633 | 349 | 99 | 0 | 10 | 358 | 7 | 355 | 0.0 | 509 |
| Msa0812330 | AT2G36460.3 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 7.46e-176 | 489 |
| Msa0812330 | AT2G36460.2 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 7.46e-176 | 489 |
| Msa0812330 | AT5G03690.3 | 86.891 | 267 | 34 | 1 | 93 | 358 | 1 | 267 | 3.29e-164 | 459 |
| Msa0812330 | AT5G03690.4 | 86.891 | 267 | 34 | 1 | 93 | 358 | 1 | 267 | 3.29e-164 | 459 |
| Msa0812330 | AT2G21330.1 | 57.345 | 354 | 146 | 4 | 6 | 358 | 50 | 399 | 4.81e-137 | 396 |
| Msa0812330 | AT4G38970.1 | 57.062 | 354 | 147 | 4 | 6 | 358 | 49 | 398 | 5.85e-137 | 395 |
| Msa0812330 | AT2G01140.1 | 55.682 | 352 | 151 | 4 | 8 | 358 | 44 | 391 | 3.50e-134 | 388 |
| Msa0812330 | AT2G21330.3 | 55.367 | 354 | 143 | 5 | 6 | 358 | 50 | 389 | 3.53e-128 | 373 |
| Msa0812330 | AT4G38970.2 | 57.143 | 259 | 109 | 2 | 6 | 263 | 49 | 306 | 9.78e-99 | 298 |
| Msa0812330 | AT2G21330.2 | 56.371 | 259 | 111 | 2 | 6 | 263 | 50 | 307 | 6.46e-98 | 293 |
Find 143 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGATTTCGGATTAATTT+AGG | 0.174132 | 5_3:+42301916 | None:intergenic |
| TGGACCCTTTCCTTCTCTTT+TGG | 0.209134 | 5_3:-42302386 | Msa0812330:CDS |
| TGAGAAATAAAGTGAGGTTT+TGG | 0.257019 | 5_3:+42304499 | None:intergenic |
| CTTACCCTTGACTTGGTTGA+TGG | 0.263243 | 5_3:+42302415 | None:intergenic |
| AATGAAGCTGGTGTGCTTCC+TGG | 0.302339 | 5_3:-42302974 | Msa0812330:CDS |
| TGATCGAGGTAGGTTTGTTT+TGG | 0.314472 | 5_3:+42304430 | None:intergenic |
| GTTAAAACAACATTCGATTT+CGG | 0.324429 | 5_3:+42301905 | None:intergenic |
| CTGGTGCACGTTTCGCTAAA+TGG | 0.326388 | 5_3:-42302847 | Msa0812330:CDS |
| AAGAGGGTAGGTTAAGAATA+AGG | 0.334430 | 5_3:+42304465 | None:intergenic |
| GAGAGCTCAGATGGCTCATT+GGG | 0.370996 | 5_3:+42302803 | None:intergenic |
| ACCACCACTCAGGGTCTTGA+TGG | 0.384125 | 5_3:-42302902 | Msa0812330:CDS |
| TAGACGCTTTCCAATTGTTC+CGG | 0.385779 | 5_3:+42303855 | None:intergenic |
| ACCTTTGGTGCATCAGATCC+AGG | 0.397934 | 5_3:+42302563 | None:intergenic |
| AATTTCAGGTTCAGTGTACT+TGG | 0.398447 | 5_3:-42302039 | Msa0812330:three_prime_UTR |
| GCTTCAAGAGAGTGCCTTCA+AGG | 0.401651 | 5_3:+42302600 | None:intergenic |
| GATGAGTCAACCGGAACAAT+TGG | 0.403195 | 5_3:-42303865 | Msa0812330:CDS |
| GGTGGTTTCTCCATCAGTTC+CGG | 0.405974 | 5_3:+42302919 | None:intergenic |
| GAGCCTGAGATCCTTGTTGA+TGG | 0.408703 | 5_3:-42302707 | Msa0812330:CDS |
| ACAACCTCGGGTGCAACCTT+TGG | 0.418995 | 5_3:+42302548 | None:intergenic |
| GGTGTCCTTCAGTACCTTAG+TGG | 0.421088 | 5_3:-42303763 | Msa0812330:CDS |
| AGCAGCAAGAATACCCTTGC+CGG | 0.424830 | 5_3:+42303888 | None:intergenic |
| AAGGGTACCGTTGAGCTTGC+CGG | 0.426023 | 5_3:-42302938 | Msa0812330:CDS |
| GATCCAGGGGTAACCATGTT+AGG | 0.432972 | 5_3:+42302578 | None:intergenic |
| CTGCAGCGGTGCTTTGGTAG+AGG | 0.433294 | 5_3:+42303719 | None:intergenic |
| GGGTAGGTTAAGAATAAGGT+AGG | 0.436283 | 5_3:+42304469 | None:intergenic |
| GACCACCATGTCCTCCTTGA+AGG | 0.437194 | 5_3:-42302614 | Msa0812330:CDS |
| ATATAGTGATTATGATGGAT+TGG | 0.437581 | 5_3:+42304528 | None:intergenic |
| AGTACCCTCAAGGCATGGTC+TGG | 0.442363 | 5_3:-42302347 | Msa0812330:CDS |
| TTGGCATATGACTGCATATC+GGG | 0.442827 | 5_3:+42302754 | None:intergenic |
| TAGTGGAGTCATCCTCTTTG+AGG | 0.444154 | 5_3:-42303746 | Msa0812330:CDS |
| TTTATATATAGTGATTATGA+TGG | 0.454462 | 5_3:+42304523 | None:intergenic |
| AGAGAGCTCAGATGGCTCAT+TGG | 0.456356 | 5_3:+42302802 | None:intergenic |
| AGGATCTCAGGCTCAACAAT+TGG | 0.457558 | 5_3:+42302716 | None:intergenic |
| ATGGCTTCTTACCCTTGACT+TGG | 0.461709 | 5_3:+42302408 | None:intergenic |
| GGACACCAGGGGCGGTGAAA+AGG | 0.463623 | 5_3:+42303779 | None:intergenic |
| CCATGAGAATGCCTATGGTT+TGG | 0.465357 | 5_3:-42302777 | Msa0812330:CDS |
| GCTAATTCTGAGGCTACTCT+TGG | 0.466145 | 5_3:-42302272 | Msa0812330:CDS |
| GTTGATGTCTTGAATGAAGC+TGG | 0.466284 | 5_3:-42302986 | Msa0812330:CDS |
| CTCAAGAAGCTTTGTTGACA+AGG | 0.466664 | 5_3:-42302301 | Msa0812330:CDS |
| TATAGTGATTATGATGGATT+GGG | 0.466756 | 5_3:+42304529 | None:intergenic |
| TGGCGTGCAGTGCTTAAAAT+CGG | 0.467744 | 5_3:-42302827 | Msa0812330:CDS |
| CTTGGTCCAACCCGAGCTAA+AGG | 0.468746 | 5_3:-42302021 | Msa0812330:three_prime_UTR |
| GAGGACATGGTGGTCATTCA+AGG | 0.470656 | 5_3:+42302622 | None:intergenic |
| CTCTACCAAAGCACCGCTGC+AGG | 0.473908 | 5_3:-42303718 | Msa0812330:intron |
| CCAGACAAGAAAACAACAGC+TGG | 0.481066 | 5_3:+42302476 | None:intergenic |
| AAGTACCTGCAGCGGTGCTT+TGG | 0.482170 | 5_3:+42303713 | None:intergenic |
| TACAAGGGTAACTCTAAACT+TGG | 0.485439 | 5_3:-42302245 | Msa0812330:CDS |
| GTGTGCTCAGCAACAACCTC+GGG | 0.487306 | 5_3:+42302536 | None:intergenic |
| AGCTTTGTTGACAAGGGCTA+AGG | 0.490730 | 5_3:-42302294 | Msa0812330:CDS |
| TTTATAATAACCCTTTAGCT+CGG | 0.494818 | 5_3:+42302010 | None:intergenic |
| TGCAGCGGTGCTTTGGTAGA+GGG | 0.495649 | 5_3:+42303720 | None:intergenic |
| TTGGTACAAGTCCATTCTCT+TGG | 0.496399 | 5_3:+42302735 | None:intergenic |
| TTATAATAACCCTTTAGCTC+GGG | 0.498924 | 5_3:+42302011 | None:intergenic |
| ATTGCCAATGCTGCCTACAT+TGG | 0.501816 | 5_3:-42303916 | Msa0812330:CDS |
| AGCTGGGACTGCAGCAGGTA+CGG | 0.503571 | 5_3:+42302493 | None:intergenic |
| CTTGCTGCTGATGAGTCAAC+CGG | 0.504792 | 5_3:-42303874 | Msa0812330:CDS |
| CTTGGCATATGACTGCATAT+CGG | 0.504914 | 5_3:+42302753 | None:intergenic |
| TGCGAGACAGAATAATTGCT+TGG | 0.506543 | 5_3:-42302097 | Msa0812330:three_prime_UTR |
| GTTGAGCTTGCCGGAACTGA+TGG | 0.507933 | 5_3:-42302929 | Msa0812330:CDS |
| GGTCCATCAACAAGGATCTC+AGG | 0.508887 | 5_3:+42302704 | None:intergenic |
| TCTATCCATGAGAATGCCTA+TGG | 0.509032 | 5_3:-42302782 | Msa0812330:CDS |
| TGGTGTGCTTCCTGGTATCA+AGG | 0.513204 | 5_3:-42302966 | Msa0812330:CDS |
| GGGCGGTGAAAAGGAGTTCA+CGG | 0.513566 | 5_3:+42303788 | None:intergenic |
| CCCTTGTCAACCTTGATACC+AGG | 0.513576 | 5_3:+42302956 | None:intergenic |
| GCAGTCATATGCCAAGAGAA+TGG | 0.513764 | 5_3:-42302746 | Msa0812330:CDS |
| CCCTTCCAAAAGAGAAGGAA+AGG | 0.518782 | 5_3:+42302381 | None:intergenic |
| AATAACCCTTTAGCTCGGGT+TGG | 0.519996 | 5_3:+42302015 | None:intergenic |
| TTGGTCCAACCCGAGCTAAA+GGG | 0.520195 | 5_3:-42302020 | Msa0812330:three_prime_UTR |
| ACAACAGCTGGGACTGCAGC+AGG | 0.520425 | 5_3:+42302488 | None:intergenic |
| CTACATTGGCACACCCGGCA+AGG | 0.521637 | 5_3:-42303902 | Msa0812330:CDS |
| TGTCCTTGCAGCATGCTACA+AGG | 0.521812 | 5_3:-42302645 | Msa0812330:CDS |
| TGTGCCAATGTAGGCAGCAT+TGG | 0.523397 | 5_3:+42303912 | None:intergenic |
| GCTGCCTACATTGGCACACC+CGG | 0.524564 | 5_3:-42303907 | Msa0812330:CDS |
| CCCTGGATCTGATGCACCAA+AGG | 0.525088 | 5_3:-42302564 | Msa0812330:CDS |
| CTAAGGTACTGAAGGACACC+AGG | 0.526807 | 5_3:+42303766 | None:intergenic |
| TGGTGGACAGAGTGAGGAAG+AGG | 0.529702 | 5_3:-42302456 | Msa0812330:CDS |
| CTTGCCGGGTGTGCCAATGT+AGG | 0.530596 | 5_3:+42303903 | None:intergenic |
| TGACTTGGTTGATGGCATTG+AGG | 0.532962 | 5_3:+42302423 | None:intergenic |
| GGCTACTCTTGGAACTTACA+AGG | 0.533473 | 5_3:-42302261 | Msa0812330:CDS |
| TCATTCAAGACATCAACAAA+AGG | 0.537499 | 5_3:+42302992 | None:intergenic |
| GGTAACTCTAAACTTGGTGC+TGG | 0.539715 | 5_3:-42302239 | Msa0812330:CDS |
| AAGCCTAACATGGTTACCCC+TGG | 0.543234 | 5_3:-42302581 | Msa0812330:CDS |
| TTCACGGAGAGCACGTCTGT+TGG | 0.544051 | 5_3:+42303804 | None:intergenic |
| GGTAGGTTAAGAATAAGGTA+GGG | 0.544916 | 5_3:+42304470 | None:intergenic |
| CACTCTCTTGAAGCCTAACA+TGG | 0.547031 | 5_3:-42302591 | Msa0812330:CDS |
| CCAAACCATAGGCATTCTCA+TGG | 0.550708 | 5_3:+42302777 | None:intergenic |
| GATTTCGGATTAATTTAGGA+TGG | 0.552335 | 5_3:+42301920 | None:intergenic |
| ATTTCGGATTAATTTAGGAT+GGG | 0.553743 | 5_3:+42301921 | None:intergenic |
| AAAGAGAAGGAAAGGGTCCA+TGG | 0.554272 | 5_3:+42302389 | None:intergenic |
| AAGTCAAGGGTAAGAAGCCA+TGG | 0.558340 | 5_3:-42302406 | Msa0812330:CDS |
| TCCTGGTATCAAGGTTGACA+AGG | 0.560548 | 5_3:-42302957 | Msa0812330:CDS |
| GCAGCAAGAATACCCTTGCC+GGG | 0.561946 | 5_3:+42303889 | None:intergenic |
| AAGTTCGACATGATCGAGGT+AGG | 0.562374 | 5_3:+42304420 | None:intergenic |
| ACTCAGGGTCTTGATGGACT+TGG | 0.562479 | 5_3:-42302896 | Msa0812330:CDS |
| CTTGTCTGGTGGACAGAGTG+AGG | 0.562758 | 5_3:-42302462 | Msa0812330:CDS |
| CTCAGAGAGTCTTCATGTGA+AGG | 0.562837 | 5_3:-42302213 | Msa0812330:CDS |
| TACATTGGCACACCCGGCAA+GGG | 0.569483 | 5_3:-42303901 | Msa0812330:CDS |
| TGATGGAGAAACCACCACTC+AGG | 0.570496 | 5_3:-42302912 | Msa0812330:CDS |
| GATGGCATTGAGGTTGACAC+TGG | 0.575533 | 5_3:+42302433 | None:intergenic |
| GGTAGAGGGTTTCCTCAAAG+AGG | 0.575881 | 5_3:+42303734 | None:intergenic |
| TGTGCTAAGTACTATGAAGC+TGG | 0.576101 | 5_3:-42302866 | Msa0812330:CDS |
| CCTTTGGTGCATCAGATCCA+GGG | 0.582593 | 5_3:+42302564 | None:intergenic |
| GATGGAGAAACCACCACTCA+GGG | 0.584183 | 5_3:-42302911 | Msa0812330:CDS |
| CAATGCCATCAACCAAGTCA+AGG | 0.584504 | 5_3:-42302420 | Msa0812330:CDS |
| ATCAGTTCCGGCAAGCTCAA+CGG | 0.584893 | 5_3:+42302931 | None:intergenic |
| GAGTGCCTTCAAGGAGGACA+TGG | 0.586352 | 5_3:+42302609 | None:intergenic |
| TGCACCAAAGGTTGCACCCG+AGG | 0.589398 | 5_3:-42302552 | Msa0812330:CDS |
| AGAGAGTGAGAAATAAAGTG+AGG | 0.589814 | 5_3:+42304493 | None:intergenic |
| CAAAGAGGATGACTCCACTA+AGG | 0.590051 | 5_3:+42303749 | None:intergenic |
| TCATGGATAGAGAGCTCAGA+TGG | 0.590458 | 5_3:+42302794 | None:intergenic |
| AAGTATTGATGAGTCAAAGT+TGG | 0.592391 | 5_3:-42302185 | Msa0812330:exon |
| TGACTCCACTAAGGTACTGA+AGG | 0.592512 | 5_3:+42303758 | None:intergenic |
| GCATGCTGCAAGGACACGCT+CGG | 0.593245 | 5_3:+42302652 | None:intergenic |
| TGCATATCGGGCCAAACCAT+AGG | 0.596299 | 5_3:+42302766 | None:intergenic |
| AAGTGCCCTTCCAAAAGAGA+AGG | 0.603752 | 5_3:+42302376 | None:intergenic |
| AACAGAGTACCCTCAAGGCA+TGG | 0.603839 | 5_3:-42302352 | Msa0812330:CDS |
| AATGCCATCAACCAAGTCAA+GGG | 0.616498 | 5_3:-42302419 | Msa0812330:CDS |
| CCTTCCAAAAGAGAAGGAAA+GGG | 0.621042 | 5_3:+42302382 | None:intergenic |
| TCCATCAAGACCCTGAGTGG+TGG | 0.624702 | 5_3:+42302901 | None:intergenic |
| AGGCCTTGTAGCATGCTGCA+AGG | 0.628730 | 5_3:+42302642 | None:intergenic |
| TGTCATGAGGTCCATCAACA+AGG | 0.633917 | 5_3:+42302696 | None:intergenic |
| AGTGTGCTCAGCAACAACCT+CGG | 0.636805 | 5_3:+42302535 | None:intergenic |
| TGCCTTCAAGGAGGACATGG+TGG | 0.637134 | 5_3:+42302612 | None:intergenic |
| TCAAGAAGCTTTGTTGACAA+GGG | 0.640371 | 5_3:-42302300 | Msa0812330:CDS |
| CAGACAAGAAAACAACAGCT+GGG | 0.641298 | 5_3:+42302477 | None:intergenic |
| AAGGGCTAAGGCTAATTCTG+AGG | 0.650952 | 5_3:-42302282 | Msa0812330:CDS |
| CTTTGGTGCATCAGATCCAG+GGG | 0.655083 | 5_3:+42302565 | None:intergenic |
| AAGTCCATCAAGACCCTGAG+TGG | 0.657276 | 5_3:+42302898 | None:intergenic |
| GCTACTCTTGGAACTTACAA+GGG | 0.661396 | 5_3:-42302260 | Msa0812330:CDS |
| TGGAAAAGAAGAAAATGTGA+AGG | 0.663229 | 5_3:-42302327 | Msa0812330:CDS |
| CTTGAAGTTCGACATGATCG+AGG | 0.672998 | 5_3:+42304416 | None:intergenic |
| CCTGGTATCAAGGTTGACAA+GGG | 0.676179 | 5_3:-42302956 | Msa0812330:CDS |
| ACTTCAACAGAGTACCCTCA+AGG | 0.678437 | 5_3:-42302357 | Msa0812330:CDS |
| GGGAAACAAGACAACAAAGG+AGG | 0.683439 | 5_3:+42304549 | None:intergenic |
| AACTTCAAGAGCAAGTACCA+TGG | 0.686368 | 5_3:-42304402 | Msa0812330:intron |
| TAAGGTACTGAAGGACACCA+GGG | 0.689754 | 5_3:+42303767 | None:intergenic |
| TAGGAAGTAAGTACCTGCAG+CGG | 0.691298 | 5_3:+42303705 | None:intergenic |
| CTTCACATGAAGACTCTCTG+AGG | 0.707482 | 5_3:+42302214 | None:intergenic |
| AGAGCTCAGATGGCTCATTG+GGG | 0.708734 | 5_3:+42302804 | None:intergenic |
| ATTGGGAAACAAGACAACAA+AGG | 0.714069 | 5_3:+42304546 | None:intergenic |
| TCAAGAGAGTGCCTTCAAGG+AGG | 0.717476 | 5_3:+42302603 | None:intergenic |
| AAGGTACTGAAGGACACCAG+GGG | 0.750874 | 5_3:+42303768 | None:intergenic |
| GTACTGAAGGACACCAGGGG+CGG | 0.769749 | 5_3:+42303771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAATTTGAAATTATG+TGG | - | chr5_3:42304493-42304512 | Msa0812330:five_prime_UTR | 10.0% |
| !! | TTTATATATAGTGATTATGA+TGG | + | chr5_3:42301937-42301956 | None:intergenic | 15.0% |
| !!! | TTTTATTCGTTTTATTTGTA+TGG | - | chr5_3:42302171-42302190 | Msa0812330:three_prime_UTR | 15.0% |
| !! | ATTTATATCAAAACCCTTTA+AGG | + | chr5_3:42302279-42302298 | None:intergenic | 20.0% |
| !! | TATTTATGAAATTGTAACTC+AGG | - | chr5_3:42302310-42302329 | Msa0812330:CDS | 20.0% |
| !! | ATTTATGAAATTGTAACTCA+GGG | - | chr5_3:42302311-42302330 | Msa0812330:CDS | 20.0% |
| !! | AAATCAAGTAGATCTATTTA+AGG | - | chr5_3:42302340-42302359 | Msa0812330:CDS | 20.0% |
| !!! | TGTCTAATCATGATTAATTT+TGG | - | chr5_3:42302435-42302454 | Msa0812330:CDS | 20.0% |
| !!! | GTCTAATCATGATTAATTTT+GGG | - | chr5_3:42302436-42302455 | Msa0812330:CDS | 20.0% |
| !!! | TTTGTTCTTTTGATAATTTC+AGG | - | chr5_3:42304404-42304423 | Msa0812330:CDS | 20.0% |
| !!! | TATAGTGATTATGATGGATT+GGG | + | chr5_3:42301931-42301950 | None:intergenic | 25.0% |
| !!! | ATATAGTGATTATGATGGAT+TGG | + | chr5_3:42301932-42301951 | None:intergenic | 25.0% |
| ! | AAGAGAATAGAATTATACCA+TGG | + | chr5_3:42302075-42302094 | None:intergenic | 25.0% |
| !!! | TTCGTTTTATTTGTATGGAT+CGG | - | chr5_3:42302176-42302195 | Msa0812330:three_prime_UTR | 25.0% |
| ! | TTAATTAGATTGTTGCAGTA+AGG | - | chr5_3:42302469-42302488 | Msa0812330:CDS | 25.0% |
| !! | ATGTATTGATGAACAATTCA+AGG | + | chr5_3:42302834-42302853 | None:intergenic | 25.0% |
| !!! | ATCTTTTGTTATCATGTTAG+TGG | - | chr5_3:42302852-42302871 | Msa0812330:CDS | 25.0% |
| ! | TGCTTTGTATTGTAAAAGTT+TGG | - | chr5_3:42302935-42302954 | Msa0812330:CDS | 25.0% |
| ! | CATATAAGAAAACGTGTTAA+AGG | + | chr5_3:42303079-42303098 | None:intergenic | 25.0% |
| !!! | TCTTTTGAAGATTAGAAAGA+GGG | - | chr5_3:42304299-42304318 | Msa0812330:intron | 25.0% |
| !!! | TCTTGTTATTTTGAGTATTG+TGG | - | chr5_3:42304330-42304349 | Msa0812330:intron | 25.0% |
| ! | TTTATAATAACCCTTTAGCT+CGG | + | chr5_3:42304450-42304469 | None:intergenic | 25.0% |
| !! | ATTTCGGATTAATTTAGGAT+GGG | + | chr5_3:42304539-42304558 | None:intergenic | 25.0% |
| ! | ATTCGATTTCGGATTAATTT+AGG | + | chr5_3:42304544-42304563 | None:intergenic | 25.0% |
| ! | GAGAAATAAAGTGAGGTTTT+GGG | + | chr5_3:42301960-42301979 | None:intergenic | 30.0% |
| ! | TGAGAAATAAAGTGAGGTTT+TGG | + | chr5_3:42301961-42301980 | None:intergenic | 30.0% |
| TTGGAAGAGAATGAAAAAGA+GGG | + | chr5_3:42302011-42302030 | None:intergenic | 30.0% | |
| TTTGGAAGAGAATGAAAAAG+AGG | + | chr5_3:42302012-42302031 | None:intergenic | 30.0% | |
| AGATCTATTGTTATCACCTT+CGG | - | chr5_3:42302124-42302143 | Msa0812330:three_prime_UTR | 30.0% | |
| TCATTACATCAGATCCTTAA+AGG | - | chr5_3:42302262-42302281 | Msa0812330:CDS | 30.0% | |
| CATTACATCAGATCCTTAAA+GGG | - | chr5_3:42302263-42302282 | Msa0812330:CDS | 30.0% | |
| AGTAAGGTTTATAGTTGTGT+TGG | - | chr5_3:42302485-42302504 | Msa0812330:CDS | 30.0% | |
| TTGTTCAGATTGTAAGAACT+AGG | + | chr5_3:42302774-42302793 | None:intergenic | 30.0% | |
| GATAACAAAAGCAATAGACA+TGG | + | chr5_3:42302897-42302916 | None:intergenic | 30.0% | |
| ACAATACAAAGCAATAGACA+TGG | + | chr5_3:42302928-42302947 | None:intergenic | 30.0% | |
| TATTGTAAAAGTTTGGATCG+TGG | - | chr5_3:42302942-42302961 | Msa0812330:CDS | 30.0% | |
| ATCTATTGCTTTGTGAAGTT+TGG | - | chr5_3:42303032-42303051 | Msa0812330:intron | 30.0% | |
| ATGATAAGAAATCACGTTGA+AGG | - | chr5_3:42303124-42303143 | Msa0812330:intron | 30.0% | |
| TTGATAAGAAAACACGTTGA+AGG | - | chr5_3:42303189-42303208 | Msa0812330:intron | 30.0% | |
| AATTAGTGATCCATCATGTT+AGG | - | chr5_3:42303213-42303232 | Msa0812330:intron | 30.0% | |
| !!! | ATTTTTTGCATCCCAAAAAG+GGG | + | chr5_3:42303290-42303309 | None:intergenic | 30.0% |
| !!! | CATTTTTTGCATCCCAAAAA+GGG | + | chr5_3:42303291-42303310 | None:intergenic | 30.0% |
| !!! | ACATTTTTTGCATCCCAAAA+AGG | + | chr5_3:42303292-42303311 | None:intergenic | 30.0% |
| ! | TTCTTGATTGCTTCTTTTTG+TGG | - | chr5_3:42303365-42303384 | Msa0812330:intron | 30.0% |
| TCATTCAAGACATCAACAAA+AGG | + | chr5_3:42303468-42303487 | None:intergenic | 30.0% | |
| TGGAAAAGAAGAAAATGTGA+AGG | - | chr5_3:42304130-42304149 | Msa0812330:intron | 30.0% | |
| !! | AAGTATTGATGAGTCAAAGT+TGG | - | chr5_3:42304272-42304291 | Msa0812330:intron | 30.0% |
| !! | CTCTTTTGAAGATTAGAAAG+AGG | - | chr5_3:42304298-42304317 | Msa0812330:intron | 30.0% |
| ! | TTATAATAACCCTTTAGCTC+GGG | + | chr5_3:42304449-42304468 | None:intergenic | 30.0% |
| GATTTCGGATTAATTTAGGA+TGG | + | chr5_3:42304540-42304559 | None:intergenic | 30.0% | |
| ATTGGGAAACAAGACAACAA+AGG | + | chr5_3:42301914-42301933 | None:intergenic | 35.0% | |
| AGAGAGTGAGAAATAAAGTG+AGG | + | chr5_3:42301967-42301986 | None:intergenic | 35.0% | |
| GGTAGGTTAAGAATAAGGTA+GGG | + | chr5_3:42301990-42302009 | None:intergenic | 35.0% | |
| AAGAGGGTAGGTTAAGAATA+AGG | + | chr5_3:42301995-42302014 | None:intergenic | 35.0% | |
| AAGAGAATGAAAAAGAGGGT+AGG | + | chr5_3:42302007-42302026 | None:intergenic | 35.0% | |
| AAAAATTGAGCAAGATCCGA+AGG | + | chr5_3:42302143-42302162 | None:intergenic | 35.0% | |
| TTGTATGGATCGGTAATTGT+TGG | - | chr5_3:42302186-42302205 | Msa0812330:exon | 35.0% | |
| TCTATTGCTTCCTAACATGA+TGG | + | chr5_3:42303226-42303245 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCATCCCAAAAAGG+GGG | + | chr5_3:42303289-42303308 | None:intergenic | 35.0% |
| !! | TCAAGAAGCTTTGTTGACAA+GGG | - | chr5_3:42304157-42304176 | Msa0812330:intron | 35.0% |
| TACAAGGGTAACTCTAAACT+TGG | - | chr5_3:42304212-42304231 | Msa0812330:intron | 35.0% | |
| !! | AATTTCAGGTTCAGTGTACT+TGG | - | chr5_3:42304418-42304437 | Msa0812330:exon | 35.0% |
| GGGTAGGTTAAGAATAAGGT+AGG | + | chr5_3:42301991-42302010 | None:intergenic | 40.0% | |
| !! | TGATCGAGGTAGGTTTGTTT+TGG | + | chr5_3:42302030-42302049 | None:intergenic | 40.0% |
| AACTTCAAGAGCAAGTACCA+TGG | - | chr5_3:42302055-42302074 | Msa0812330:three_prime_UTR | 40.0% | |
| TAGACGCTTTCCAATTGTTC+CGG | + | chr5_3:42302605-42302624 | None:intergenic | 40.0% | |
| ! | TTTTTGCATCCCAAAAAGGG+GGG | + | chr5_3:42303288-42303307 | None:intergenic | 40.0% |
| ! | GTATGTGTTTTTCCTGCTTG+CGG | - | chr5_3:42303337-42303356 | Msa0812330:intron | 40.0% |
| GTTGATGTCTTGAATGAAGC+TGG | - | chr5_3:42303471-42303490 | Msa0812330:intron | 40.0% | |
| TGTGCTAAGTACTATGAAGC+TGG | - | chr5_3:42303591-42303610 | Msa0812330:intron | 40.0% | |
| TCTATCCATGAGAATGCCTA+TGG | - | chr5_3:42303675-42303694 | Msa0812330:intron | 40.0% | |
| TTGGCATATGACTGCATATC+GGG | + | chr5_3:42303706-42303725 | None:intergenic | 40.0% | |
| CTTGGCATATGACTGCATAT+CGG | + | chr5_3:42303707-42303726 | None:intergenic | 40.0% | |
| TTGGTACAAGTCCATTCTCT+TGG | + | chr5_3:42303725-42303744 | None:intergenic | 40.0% | |
| ! | GCACACTTTTGAATGTCATG+AGG | + | chr5_3:42303777-42303796 | None:intergenic | 40.0% |
| CAGACAAGAAAACAACAGCT+GGG | + | chr5_3:42303983-42304002 | None:intergenic | 40.0% | |
| AATGCCATCAACCAAGTCAA+GGG | - | chr5_3:42304038-42304057 | Msa0812330:intron | 40.0% | |
| CCTTCCAAAAGAGAAGGAAA+GGG | + | chr5_3:42304078-42304097 | None:intergenic | 40.0% | |
| !! | CCTTTCCTTCTCTTTTGGAA+GGG | - | chr5_3:42304076-42304095 | Msa0812330:intron | 40.0% |
| !! | CTCAAGAAGCTTTGTTGACA+AGG | - | chr5_3:42304156-42304175 | Msa0812330:intron | 40.0% |
| GCTACTCTTGGAACTTACAA+GGG | - | chr5_3:42304197-42304216 | Msa0812330:intron | 40.0% | |
| TGCGAGACAGAATAATTGCT+TGG | - | chr5_3:42304360-42304379 | Msa0812330:intron | 40.0% | |
| GGGAAACAAGACAACAAAGG+AGG | + | chr5_3:42301911-42301930 | None:intergenic | 45.0% | |
| AAGTTCGACATGATCGAGGT+AGG | + | chr5_3:42302040-42302059 | None:intergenic | 45.0% | |
| CTTGAAGTTCGACATGATCG+AGG | + | chr5_3:42302044-42302063 | None:intergenic | 45.0% | |
| ATTGCCAATGCTGCCTACAT+TGG | - | chr5_3:42302541-42302560 | Msa0812330:CDS | 45.0% | |
| GATGAGTCAACCGGAACAAT+TGG | - | chr5_3:42302592-42302611 | Msa0812330:CDS | 45.0% | |
| !! | TAAGGTACTGAAGGACACCA+GGG | + | chr5_3:42302693-42302712 | None:intergenic | 45.0% |
| !! | TGACTCCACTAAGGTACTGA+AGG | + | chr5_3:42302702-42302721 | None:intergenic | 45.0% |
| CAAAGAGGATGACTCCACTA+AGG | + | chr5_3:42302711-42302730 | None:intergenic | 45.0% | |
| TAGTGGAGTCATCCTCTTTG+AGG | - | chr5_3:42302711-42302730 | Msa0812330:CDS | 45.0% | |
| TAGGAAGTAAGTACCTGCAG+CGG | + | chr5_3:42302755-42302774 | None:intergenic | 45.0% | |
| ! | TTTTGCATCCCAAAAAGGGG+GGG | + | chr5_3:42303287-42303306 | None:intergenic | 45.0% |
| TCCTGGTATCAAGGTTGACA+AGG | - | chr5_3:42303500-42303519 | Msa0812330:intron | 45.0% | |
| CCTGGTATCAAGGTTGACAA+GGG | - | chr5_3:42303501-42303520 | Msa0812330:intron | 45.0% | |
| TGGCGTGCAGTGCTTAAAAT+CGG | - | chr5_3:42303630-42303649 | Msa0812330:intron | 45.0% | |
| TCATGGATAGAGAGCTCAGA+TGG | + | chr5_3:42303666-42303685 | None:intergenic | 45.0% | |
| CCAAACCATAGGCATTCTCA+TGG | + | chr5_3:42303683-42303702 | None:intergenic | 45.0% | |
| CCATGAGAATGCCTATGGTT+TGG | - | chr5_3:42303680-42303699 | Msa0812330:intron | 45.0% | |
| GCAGTCATATGCCAAGAGAA+TGG | - | chr5_3:42303711-42303730 | Msa0812330:intron | 45.0% | |
| AGGATCTCAGGCTCAACAAT+TGG | + | chr5_3:42303744-42303763 | None:intergenic | 45.0% | |
| TGTCATGAGGTCCATCAACA+AGG | + | chr5_3:42303764-42303783 | None:intergenic | 45.0% | |
| CACTCTCTTGAAGCCTAACA+TGG | - | chr5_3:42303866-42303885 | Msa0812330:CDS | 45.0% | |
| CCAGACAAGAAAACAACAGC+TGG | + | chr5_3:42303984-42304003 | None:intergenic | 45.0% | |
| !!! | CCAGCTGTTGTTTTCTTGTC+TGG | - | chr5_3:42303981-42304000 | Msa0812330:intron | 45.0% |
| !!! | GCTGTTGTTTTCTTGTCTGG+TGG | - | chr5_3:42303984-42304003 | Msa0812330:intron | 45.0% |
| !! | TGACTTGGTTGATGGCATTG+AGG | + | chr5_3:42304037-42304056 | None:intergenic | 45.0% |
| CAATGCCATCAACCAAGTCA+AGG | - | chr5_3:42304037-42304056 | Msa0812330:intron | 45.0% | |
| !! | CTTACCCTTGACTTGGTTGA+TGG | + | chr5_3:42304045-42304064 | None:intergenic | 45.0% |
| ATGGCTTCTTACCCTTGACT+TGG | + | chr5_3:42304052-42304071 | None:intergenic | 45.0% | |
| AAGTCAAGGGTAAGAAGCCA+TGG | - | chr5_3:42304051-42304070 | Msa0812330:intron | 45.0% | |
| AAAGAGAAGGAAAGGGTCCA+TGG | + | chr5_3:42304071-42304090 | None:intergenic | 45.0% | |
| ! | TGGACCCTTTCCTTCTCTTT+TGG | - | chr5_3:42304071-42304090 | Msa0812330:intron | 45.0% |
| ! | CCCTTTCCTTCTCTTTTGGA+AGG | - | chr5_3:42304075-42304094 | Msa0812330:intron | 45.0% |
| CCCTTCCAAAAGAGAAGGAA+AGG | + | chr5_3:42304079-42304098 | None:intergenic | 45.0% | |
| AAGTGCCCTTCCAAAAGAGA+AGG | + | chr5_3:42304084-42304103 | None:intergenic | 45.0% | |
| ! | ACTTCAACAGAGTACCCTCA+AGG | - | chr5_3:42304100-42304119 | Msa0812330:intron | 45.0% |
| ! | TTTTCCAGACCATGCCTTGA+GGG | + | chr5_3:42304117-42304136 | None:intergenic | 45.0% |
| !! | AGCTTTGTTGACAAGGGCTA+AGG | - | chr5_3:42304163-42304182 | Msa0812330:intron | 45.0% |
| AAGGGCTAAGGCTAATTCTG+AGG | - | chr5_3:42304175-42304194 | Msa0812330:intron | 45.0% | |
| !! | GCTAATTCTGAGGCTACTCT+TGG | - | chr5_3:42304185-42304204 | Msa0812330:intron | 45.0% |
| GGCTACTCTTGGAACTTACA+AGG | - | chr5_3:42304196-42304215 | Msa0812330:intron | 45.0% | |
| !! | GGTAACTCTAAACTTGGTGC+TGG | - | chr5_3:42304218-42304237 | Msa0812330:intron | 45.0% |
| CTTCACATGAAGACTCTCTG+AGG | + | chr5_3:42304246-42304265 | None:intergenic | 45.0% | |
| CTCAGAGAGTCTTCATGTGA+AGG | - | chr5_3:42304244-42304263 | Msa0812330:intron | 45.0% | |
| ! | AATAACCCTTTAGCTCGGGT+TGG | + | chr5_3:42304445-42304464 | None:intergenic | 45.0% |
| !!! | AATGTATTTTTTTTTTTTTT+AGG | - | chr5_3:42303438-42303457 | Msa0812330:intron | 5.0% |
| TGTGCCAATGTAGGCAGCAT+TGG | + | chr5_3:42302548-42302567 | None:intergenic | 50.0% | |
| AGCAGCAAGAATACCCTTGC+CGG | + | chr5_3:42302572-42302591 | None:intergenic | 50.0% | |
| CTTGCTGCTGATGAGTCAAC+CGG | - | chr5_3:42302583-42302602 | Msa0812330:CDS | 50.0% | |
| !! | AAGGTACTGAAGGACACCAG+GGG | + | chr5_3:42302692-42302711 | None:intergenic | 50.0% |
| !! | CTAAGGTACTGAAGGACACC+AGG | + | chr5_3:42302694-42302713 | None:intergenic | 50.0% |
| GGTGTCCTTCAGTACCTTAG+TGG | - | chr5_3:42302694-42302713 | Msa0812330:CDS | 50.0% | |
| GGTAGAGGGTTTCCTCAAAG+AGG | + | chr5_3:42302726-42302745 | None:intergenic | 50.0% | |
| TTTGCATCCCAAAAAGGGGG+GGG | + | chr5_3:42303286-42303305 | None:intergenic | 50.0% | |
| AATGAAGCTGGTGTGCTTCC+TGG | - | chr5_3:42303483-42303502 | Msa0812330:intron | 50.0% | |
| TGGTGTGCTTCCTGGTATCA+AGG | - | chr5_3:42303491-42303510 | Msa0812330:intron | 50.0% | |
| CCCTTGTCAACCTTGATACC+AGG | + | chr5_3:42303504-42303523 | None:intergenic | 50.0% | |
| ATCAGTTCCGGCAAGCTCAA+CGG | + | chr5_3:42303529-42303548 | None:intergenic | 50.0% | |
| GGTGGTTTCTCCATCAGTTC+CGG | + | chr5_3:42303541-42303560 | None:intergenic | 50.0% | |
| TGATGGAGAAACCACCACTC+AGG | - | chr5_3:42303545-42303564 | Msa0812330:intron | 50.0% | |
| GATGGAGAAACCACCACTCA+GGG | - | chr5_3:42303546-42303565 | Msa0812330:intron | 50.0% | |
| AAGTCCATCAAGACCCTGAG+TGG | + | chr5_3:42303562-42303581 | None:intergenic | 50.0% | |
| !! | ACTCAGGGTCTTGATGGACT+TGG | - | chr5_3:42303561-42303580 | Msa0812330:intron | 50.0% |
| CTGGTGCACGTTTCGCTAAA+TGG | - | chr5_3:42303610-42303629 | Msa0812330:intron | 50.0% | |
| AGAGCTCAGATGGCTCATTG+GGG | + | chr5_3:42303656-42303675 | None:intergenic | 50.0% | |
| GAGAGCTCAGATGGCTCATT+GGG | + | chr5_3:42303657-42303676 | None:intergenic | 50.0% | |
| AGAGAGCTCAGATGGCTCAT+TGG | + | chr5_3:42303658-42303677 | None:intergenic | 50.0% | |
| TGCATATCGGGCCAAACCAT+AGG | + | chr5_3:42303694-42303713 | None:intergenic | 50.0% | |
| GAGCCTGAGATCCTTGTTGA+TGG | - | chr5_3:42303750-42303769 | Msa0812330:CDS | 50.0% | |
| GGTCCATCAACAAGGATCTC+AGG | + | chr5_3:42303756-42303775 | None:intergenic | 50.0% | |
| TGTCCTTGCAGCATGCTACA+AGG | - | chr5_3:42303812-42303831 | Msa0812330:CDS | 50.0% | |
| GAGGACATGGTGGTCATTCA+AGG | + | chr5_3:42303838-42303857 | None:intergenic | 50.0% | |
| !! | TCAAGAGAGTGCCTTCAAGG+AGG | + | chr5_3:42303857-42303876 | None:intergenic | 50.0% |
| !! | GCTTCAAGAGAGTGCCTTCA+AGG | + | chr5_3:42303860-42303879 | None:intergenic | 50.0% |
| AAGCCTAACATGGTTACCCC+TGG | - | chr5_3:42303876-42303895 | Msa0812330:CDS | 50.0% | |
| GATCCAGGGGTAACCATGTT+AGG | + | chr5_3:42303882-42303901 | None:intergenic | 50.0% | |
| ! | CTTTGGTGCATCAGATCCAG+GGG | + | chr5_3:42303895-42303914 | None:intergenic | 50.0% |
| ! | CCTTTGGTGCATCAGATCCA+GGG | + | chr5_3:42303896-42303915 | None:intergenic | 50.0% |
| ! | ACCTTTGGTGCATCAGATCC+AGG | + | chr5_3:42303897-42303916 | None:intergenic | 50.0% |
| AGTGTGCTCAGCAACAACCT+CGG | + | chr5_3:42303925-42303944 | None:intergenic | 50.0% | |
| ! | GATGGCATTGAGGTTGACAC+TGG | + | chr5_3:42304027-42304046 | None:intergenic | 50.0% |
| ! | AACAGAGTACCCTCAAGGCA+TGG | - | chr5_3:42304105-42304124 | Msa0812330:intron | 50.0% |
| ! | CTTTTCCAGACCATGCCTTG+AGG | + | chr5_3:42304118-42304137 | None:intergenic | 50.0% |
| TTGGTCCAACCCGAGCTAAA+GGG | - | chr5_3:42304437-42304456 | Msa0812330:five_prime_UTR | 50.0% | |
| TACATTGGCACACCCGGCAA+GGG | - | chr5_3:42302556-42302575 | Msa0812330:CDS | 55.0% | |
| GCAGCAAGAATACCCTTGCC+GGG | + | chr5_3:42302571-42302590 | None:intergenic | 55.0% | |
| ! | TTCACGGAGAGCACGTCTGT+TGG | + | chr5_3:42302656-42302675 | None:intergenic | 55.0% |
| GGGCGGTGAAAAGGAGTTCA+CGG | + | chr5_3:42302672-42302691 | None:intergenic | 55.0% | |
| TGCAGCGGTGCTTTGGTAGA+GGG | + | chr5_3:42302740-42302759 | None:intergenic | 55.0% | |
| AAGTACCTGCAGCGGTGCTT+TGG | + | chr5_3:42302747-42302766 | None:intergenic | 55.0% | |
| TTGCATCCCAAAAAGGGGGG+GGG | + | chr5_3:42303285-42303304 | None:intergenic | 55.0% | |
| TCAAGAACAGCTCCGCAAGC+AGG | + | chr5_3:42303352-42303371 | None:intergenic | 55.0% | |
| !! | AAGGGTACCGTTGAGCTTGC+CGG | - | chr5_3:42303519-42303538 | Msa0812330:intron | 55.0% |
| GTTGAGCTTGCCGGAACTGA+TGG | - | chr5_3:42303528-42303547 | Msa0812330:intron | 55.0% | |
| ACCACCACTCAGGGTCTTGA+TGG | - | chr5_3:42303555-42303574 | Msa0812330:intron | 55.0% | |
| TCCATCAAGACCCTGAGTGG+TGG | + | chr5_3:42303559-42303578 | None:intergenic | 55.0% | |
| ! | AGGCCTTGTAGCATGCTGCA+AGG | + | chr5_3:42303818-42303837 | None:intergenic | 55.0% |
| GACCACCATGTCCTCCTTGA+AGG | - | chr5_3:42303843-42303862 | Msa0812330:CDS | 55.0% | |
| TGCCTTCAAGGAGGACATGG+TGG | + | chr5_3:42303848-42303867 | None:intergenic | 55.0% | |
| GAGTGCCTTCAAGGAGGACA+TGG | + | chr5_3:42303851-42303870 | None:intergenic | 55.0% | |
| CCCTGGATCTGATGCACCAA+AGG | - | chr5_3:42303893-42303912 | Msa0812330:CDS | 55.0% | |
| ACAACCTCGGGTGCAACCTT+TGG | + | chr5_3:42303912-42303931 | None:intergenic | 55.0% | |
| GTGTGCTCAGCAACAACCTC+GGG | + | chr5_3:42303924-42303943 | None:intergenic | 55.0% | |
| ! | CTTGTCTGGTGGACAGAGTG+AGG | - | chr5_3:42303995-42304014 | Msa0812330:intron | 55.0% |
| ! | TGGTGGACAGAGTGAGGAAG+AGG | - | chr5_3:42304001-42304020 | Msa0812330:intron | 55.0% |
| AGTACCCTCAAGGCATGGTC+TGG | - | chr5_3:42304110-42304129 | Msa0812330:intron | 55.0% | |
| CTTGGTCCAACCCGAGCTAA+AGG | - | chr5_3:42304436-42304455 | Msa0812330:five_prime_UTR | 55.0% | |
| GCTGCCTACATTGGCACACC+CGG | - | chr5_3:42302550-42302569 | Msa0812330:CDS | 60.0% | |
| CTTGCCGGGTGTGCCAATGT+AGG | + | chr5_3:42302557-42302576 | None:intergenic | 60.0% | |
| CTACATTGGCACACCCGGCA+AGG | - | chr5_3:42302555-42302574 | Msa0812330:CDS | 60.0% | |
| ! | GAACTCCTTTTCACCGCCCC+TGG | - | chr5_3:42302673-42302692 | Msa0812330:CDS | 60.0% |
| GTACTGAAGGACACCAGGGG+CGG | + | chr5_3:42302689-42302708 | None:intergenic | 60.0% | |
| CTGCAGCGGTGCTTTGGTAG+AGG | + | chr5_3:42302741-42302760 | None:intergenic | 60.0% | |
| !! | CTCTACCAAAGCACCGCTGC+AGG | - | chr5_3:42302739-42302758 | Msa0812330:CDS | 60.0% |
| ! | TGCATGTCCCCCCCCCTTTT+TGG | - | chr5_3:42303275-42303294 | Msa0812330:intron | 60.0% |
| ! | GCATGTCCCCCCCCCTTTTT+GGG | - | chr5_3:42303276-42303295 | Msa0812330:intron | 60.0% |
| GCATGCTGCAAGGACACGCT+CGG | + | chr5_3:42303808-42303827 | None:intergenic | 60.0% | |
| TGCACCAAAGGTTGCACCCG+AGG | - | chr5_3:42303905-42303924 | Msa0812330:CDS | 60.0% | |
| AGCTGGGACTGCAGCAGGTA+CGG | + | chr5_3:42303967-42303986 | None:intergenic | 60.0% | |
| ACAACAGCTGGGACTGCAGC+AGG | + | chr5_3:42303972-42303991 | None:intergenic | 60.0% | |
| GGACACCAGGGGCGGTGAAA+AGG | + | chr5_3:42302681-42302700 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 42301906 | 42304573 | 42301906 | ID=Msa0812330;Name=Msa0812330 |
| chr5_3 | mRNA | 42301906 | 42304573 | 42301906 | ID=Msa0812330-mRNA-1;Parent=Msa0812330;Name=Msa0812330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=143|1|1|1|1|1|3|293|358 |
| chr5_3 | exon | 42301906 | 42303019 | 42301906 | ID=Msa0812330-mRNA-1:exon:13018;Parent=Msa0812330-mRNA-1 |
| chr5_3 | exon | 42303719 | 42303946 | 42303719 | ID=Msa0812330-mRNA-1:exon:13017;Parent=Msa0812330-mRNA-1 |
| chr5_3 | exon | 42304403 | 42304573 | 42304403 | ID=Msa0812330-mRNA-1:exon:13016;Parent=Msa0812330-mRNA-1 |
| chr5_3 | five_prime_UTR | 42304431 | 42304573 | 42304431 | ID=Msa0812330-mRNA-1:five_prime_utr;Parent=Msa0812330-mRNA-1 |
| chr5_3 | CDS | 42304403 | 42304430 | 42304403 | ID=Msa0812330-mRNA-1:cds;Parent=Msa0812330-mRNA-1 |
| chr5_3 | CDS | 42303719 | 42303946 | 42303719 | ID=Msa0812330-mRNA-1:cds;Parent=Msa0812330-mRNA-1 |
| chr5_3 | CDS | 42302199 | 42303019 | 42302199 | ID=Msa0812330-mRNA-1:cds;Parent=Msa0812330-mRNA-1 |
| chr5_3 | three_prime_UTR | 42301906 | 42302198 | 42301906 | ID=Msa0812330-mRNA-1:three_prime_utr;Parent=Msa0812330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
