AlfalfaGEDB | Msa1360380

M. sativa cultivar zhongmu-4 / Msa1360380

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360380	XP_003589297.2	93.462	673	36	3	1	668	1	670	0.0	1234

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360380	sp\|Q8S9L6\|CRK29_ARATH	50.885	678	307	12	12	668	7	679	0.0	634

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360380	G7I596	93.462	673	36	3	1	668	1	670	0.0	1234

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005690	Msa1360380	0.809239	2.087774e-50	-8.615850e-47
Msa0006700	Msa1360380	0.854739	1.007250e-61	-8.615850e-47
Msa0008850	Msa1360380	0.856816	2.490718e-62	-8.615850e-47
Msa0012740	Msa1360380	0.802376	5.777536e-49	-8.615850e-47
Msa0012820	Msa1360380	-0.805830	1.104538e-49	-8.615850e-47
Msa0014790	Msa1360380	0.813145	2.968712e-51	-8.615850e-47
Msa0015370	Msa1360380	0.804504	2.092464e-49	-8.615850e-47
Msa0016440	Msa1360380	-0.805788	1.126983e-49	-8.615850e-47
Msa0017120	Msa1360380	0.803024	4.245539e-49	-8.615850e-47
Msa0017420	Msa1360380	0.838136	3.439227e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1360380	MtrunA17_Chr1g0154311	93.462	673	36	3	1	668	1	670	1234
Msa1360380	MtrunA17_Chr1g0154351	68.289	678	199	7	3	668	1	674	894
Msa1360380	MtrunA17_Chr1g0154371	65.588	680	213	6	1	668	8	678	853
Msa1360380	MtrunA17_Chr1g0154321	66.519	675	194	10	3	656	1	664	850
Msa1360380	MtrunA17_Chr1g0206531	58.092	692	245	10	1	668	1	671	731
Msa1360380	MtrunA17_Chr1g0206461	57.879	660	252	9	12	668	15	651	731
Msa1360380	MtrunA17_Chr1g0206521	58.245	661	249	9	12	668	658	1295	710
Msa1360380	MtrunA17_Chr1g0206521	58.517	634	239	8	15	647	19	629	688
Msa1360380	MtrunA17_Chr5g0426941	56.168	689	257	14	1	668	1	665	706
Msa1360380	MtrunA17_Chr1g0206561	56.947	655	248	12	33	668	16	655	681

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1360380	AT4G21410.3	50.885	678	307	12	12	668	7	679	634
Msa1360380	AT4G21400.2	52.194	638	284	11	44	668	42	671	599
Msa1360380	AT4G21400.1	51.393	646	289	11	44	668	42	683	599
Msa1360380	AT4G38830.1	49.689	644	297	12	41	668	33	665	596
Msa1360380	AT4G21230.1	50.000	624	279	14	25	639	21	620	576
Msa1360380	AT4G23160.1	48.844	649	292	14	42	668	52	682	574
Msa1360380	AT4G05200.1	46.154	676	313	15	23	668	21	675	573
Msa1360380	AT4G05200.2	46.154	676	313	15	23	668	39	693	573
Msa1360380	AT4G00970.1	47.278	643	298	13	41	668	49	665	566
Msa1360380	AT4G23180.1	48.407	659	297	14	28	668	36	669	565

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Find 144 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTCAATGAGTTC+AGG	0.503635	tig0017060:-18372	Msa1360380:CDS
AAAATGCATGTTGCGTTATT+CGG	0.297169	tig0017060:-21207	Msa1360380:CDS
AAACAGCGGCATTCGTGCTG+AGG	0.595291	tig0017060:-17595	Msa1360380:CDS
AAAGGCATGGAGAAATTGGA+AGG	0.643093	tig0017060:-17422	Msa1360380:intron
AAATTATGATTATGAGAATT+TGG	0.269258	tig0017060:+21561	None:intergenic
AACGGATTGTAATTCATGTT+TGG	0.431143	tig0017060:-20955	Msa1360380:CDS
AACTCAAGAATCAGTCAATG+GGG	0.703475	tig0017060:-17173	Msa1360380:CDS
AACTTGGAGAAGGCGGATTC+GGG	0.335401	tig0017060:-18539	Msa1360380:CDS
AAGAATTAAATGTTTATTAA+TGG	0.130735	tig0017060:+17059	None:intergenic
AAGCCAAAGAAACCGTTTGA+AGG	0.532967	tig0017060:-18757	Msa1360380:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAATTATTACTCAACTATG+AGG	-	tig0017060:17004-17023	Msa1360380:three_prime_UTR	30.0%
GAAGATTGAAAGATTTGGAT+AGG	+	tig0017060:17187-17206	None:intergenic	30.0%
TATATGTCCAAATCGAAAAG+AGG	-	tig0017060:17589-17608	Msa1360380:CDS	30.0%
AAAATGCATGTTGCGTTATT+CGG	-	tig0017060:17634-17653	Msa1360380:CDS	30.0%
CCATTACTCCTAATATCAAT+CGG	+	tig0017060:17661-17680	None:intergenic	30.0%
CCATATATAACTTCATACTG+AGG	+	tig0017060:17836-17855	None:intergenic	30.0%
CCTCAGTATGAAGTTATATA+TGG	-	tig0017060:17833-17852	Msa1360380:intron	30.0%
TCAAATCTCATGTTACAACT+AGG	+	tig0017060:17974-17993	None:intergenic	30.0%
AAGCATTTCATTGAAAACCT+TGG	+	tig0017060:18242-18261	None:intergenic	30.0%
AAGTAAGGACTAAACTTACA+AGG	+	tig0017060:18867-18886	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0017060	gene	16973	21890	16973	ID=Msa1360380;Name=Msa1360380
tig0017060	mRNA	16973	21890	16973	ID=Msa1360380-mRNA-1;Parent=Msa1360380;Name=Msa1360380-mRNA-1;_AED=0.28;_eAED=0.28;_QI=278\|1\|1\|1\|0.83\|0.71\|7\|171\|668
tig0017060	exon	16973	17440	16973	ID=Msa1360380-mRNA-1:exon:11920;Parent=Msa1360380-mRNA-1
tig0017060	exon	17569	17719	17569	ID=Msa1360380-mRNA-1:exon:11919;Parent=Msa1360380-mRNA-1
tig0017060	exon	17861	18098	17861	ID=Msa1360380-mRNA-1:exon:11918;Parent=Msa1360380-mRNA-1
tig0017060	exon	18217	18427	18217	ID=Msa1360380-mRNA-1:exon:11917;Parent=Msa1360380-mRNA-1
tig0017060	exon	18527	18672	18527	ID=Msa1360380-mRNA-1:exon:11916;Parent=Msa1360380-mRNA-1
tig0017060	exon	18758	18880	18758	ID=Msa1360380-mRNA-1:exon:11915;Parent=Msa1360380-mRNA-1
tig0017060	exon	20772	21890	20772	ID=Msa1360380-mRNA-1:exon:11914;Parent=Msa1360380-mRNA-1
tig0017060	five_prime_UTR	21613	21890	21613	ID=Msa1360380-mRNA-1:five_prime_utr;Parent=Msa1360380-mRNA-1
tig0017060	CDS	20772	21612	20772	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	CDS	18758	18880	18758	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	CDS	18527	18672	18527	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	CDS	18217	18427	18217	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	CDS	17861	18098	17861	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	CDS	17569	17719	17569	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	CDS	17144	17440	17144	ID=Msa1360380-mRNA-1:cds;Parent=Msa1360380-mRNA-1
tig0017060	three_prime_UTR	16973	17143	16973	ID=Msa1360380-mRNA-1:three_prime_utr;Parent=Msa1360380-mRNA-1

Gene Sequence

>Msa1360380

ATGGCTATTCCTTCCTTACTTTGCTCTCTCCAAATTCTCATAATCATAATTTTCACATCTCAAACCAAAGCTGTTGTATACGATGAAACAAATTTATACCACTACGTTTGTGATCAAGACAACAATAGAGGTAACTACACAACAAATAGCACCTATGACAAAAACCTCAATACACTTTTATCCACTCTCACTTCCACCACAGAAATCAACTACGGTTTCTACAATTTTTCACACGGTCAAAACAGCGACAAAGTCTACGCGATCGGACTATGCCGAGGGGATATTATGCCGAATAATTGTCGCAGTTGCCTCGGCAGCGCCAGAACAAATCTCACTCGTATATGTCCAAATCGAAAAGAGGCTATTTTTTGGTCGGAAGACGAAAAATGCATGTTGCGTTATTCGGACCGATTGATATTAGGAGTAATGGAAGATGTTCCTATGTTTTTTTCAAATAATGAAAATAATTCATCTGATGTTGATTTGTCTAATGAAGTTGTTACTACTTTGTTGAATAATTTAACAAGTAGAGCTGTGAAGGGTGATTCTAGGACTAAATATGCTGCAGGTAGTCAACCTGGTCCTCAGTATGAAGTTATATATGGTTTGGTTCAATGTACACCTGATTTGTCTGAAACGGATTGTAATTCATGTTTGGTTGAGAATCTTCAACAAATTCCTAGTTGTTGTAAAAATAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAACATGAGATTTGAAACTTCTTACCTTTTTTATGAGCCTAGAGCATCACCGCCGCCGCCACCACCATCACCTCCTCCGCCGAGCACCACCGGTGGTAATACTTCCTCACAAGGAAAAAGCAACAATGGTTCTACCATTGGCATCGCTGTAGGAGTACCAATTGCTCTTGTTGCTATGGTCTTCATTTTTATCTGCATCTATTTGAGAGTAAGGAAGCCAAAGAAACCGTTTGAAGAAATTCAAGAAGAAGAATATGATGAAGAAGATAAAATTGAAAGTCCTGAACCACTACAACTCAACTTCAACACCATACGTAATGCTACAAATGACTTCTCGCATTCTAATGAACTTGGAGAAGGCGGATTCGGGGTTGTTTACAAAGGTAGGTTATCCAATGGACAAGAGATTGCTGTCAAAAGGTTGTCAATGAGTTCAGGACAAGGAGATTCGGAGTTTAAGAATGAGGTGCTTTTGGTGGCTAAGCTTCAACACCGAAATTTAGTTAGACTACTCGGTTTCTCTCTAGAAGGAAGAGAAAGAGTACTTGTATATGAATTTGTTCCTAATAAAAGTCTTGATTATTTCATTTTTGATCAAGTTAAGAGAGCACAGTTAAATTGGGAAATGCGCTACAGAATCATTTTAGGTATTGCTCGAGGTATTCTTTACCTTCACGAGGATTCTCGACTACGCATTATTCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGAAGAAATGAATCCTAAGATATCTGATTTTGGCATGGCAAGACTATTTGGTGTGGACCAAACACAGGAAAAAACAAAAAGAATTGTGGGAACCTATGGATATATGGCACCTGAATATGCTATGCACGGACAATTTTCAGTGAAGTCAGATGTATTCAGTTTTGGTATATTGGTTCTTGAAATTGTAAGTGGTTCAAAAAACAGCGGCATTCGTGCTGAGGAGAATATGGAGTATCTCTCGAGCTTTGCATGGAGAAATTGGAAGGAGGGAACTGCAACAAGTATCATAGATCCCACATTAAACAATGACTCACGAAGTGAAATGTTGAGATGTATCCATATTGGATTACTTTGTGTTCAAGAGAATGTAGCTAGCAGACCAACCATGGCTTCTGTTGTAGTGATGCTTAATAGTGATTCTGTTACTCTCCCAATGCCTTTGGAACCTGCATTTCATATGGATGGCAGTATGAAATCATGGGGTCATAGTTCAACTCAAGAATCAGTCAATGGGGCTTCAAATACAGAGCTATATCCTCGGTAG

Protein sequence

>Msa1360380

MAIPSLLCSLQILIIIIFTSQTKAVVYDETNLYHYVCDQDNNRGNYTTNSTYDKNLNTLLSTLTSTTEINYGFYNFSHGQNSDKVYAIGLCRGDIMPNNCRSCLGSARTNLTRICPNRKEAIFWSEDEKCMLRYSDRLILGVMEDVPMFFSNNENNSSDVDLSNEVVTTLLNNLTSRAVKGDSRTKYAAGSQPGPQYEVIYGLVQCTPDLSETDCNSCLVENLQQIPSCCKNKIGGRVVRPSCNMRFETSYLFYEPRASPPPPPPSPPPPSTTGGNTSSQGKSNNGSTIGIAVGVPIALVAMVFIFICIYLRVRKPKKPFEEIQEEEYDEEDKIESPEPLQLNFNTIRNATNDFSHSNELGEGGFGVVYKGRLSNGQEIAVKRLSMSSGQGDSEFKNEVLLVAKLQHRNLVRLLGFSLEGRERVLVYEFVPNKSLDYFIFDQVKRAQLNWEMRYRIILGIARGILYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFGVDQTQEKTKRIVGTYGYMAPEYAMHGQFSVKSDVFSFGILVLEIVSGSKNSGIRAEENMEYLSSFAWRNWKEGTATSIIDPTLNNDSRSEMLRCIHIGLLCVQENVASRPTMASVVVMLNSDSVTLPMPLEPAFHMDGSMKSWGHSSTQESVNGASNTELYPR*