AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169960 MtrunA17_Chr1g0187091 95.198 479 23 0 1 479 1 479 0.0 944
Msa0169960 MtrunA17_Chr5g0395051 33.993 303 137 8 207 462 94 380 1.54e-30 125
Msa0169960 MtrunA17_Chr5g0395051 49.038 104 47 1 1 104 9 106 8.50e-23 102
Msa0169960 MtrunA17_Chr6g0468301 46.154 104 50 1 1 104 9 106 3.90e-22 92.8
Msa0169960 MtrunA17_Chr6g0468291 41.304 92 51 2 335 424 3 93 2.02e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 155 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGTATGCTTCTGTTTC+TGG 0.077711 1_4:-53501083 Msa0169960:five_prime_UTR
CTCATTTGATGGATAATTTA+AGG 0.100332 1_4:-53500538 Msa0169960:five_prime_UTR
AAATTACTTGATTGAATTAT+AGG 0.138523 1_4:+53500230 None:intergenic
AACAAATCTTCTACTATTTC+AGG 0.180626 1_4:-53499109 Msa0169960:intron
TTGGAATAATATCTCATTTC+AGG 0.185722 1_4:-53500145 Msa0169960:five_prime_UTR
GATGGTATTGGCTTGGGATT+TGG 0.227323 1_4:-53500413 Msa0169960:five_prime_UTR
ATAAGAAAATGATAGGTTTC+TGG 0.231937 1_4:-53496022 Msa0169960:three_prime_UTR
ACAATATGTGGACTGAAAAT+TGG 0.237692 1_4:+53498038 None:intergenic
GAATCTCTCAATCTCGAAAA+AGG 0.270101 1_4:+53497615 None:intergenic
GCCAGGATCTGGTGATAATT+TGG 0.270512 1_4:-53499275 Msa0169960:intron
CAGTAATTCAAATGAGAAAT+TGG 0.285859 1_4:+53497804 None:intergenic
ATGGTATTGGCTTGGGATTT+GGG 0.285962 1_4:-53500412 Msa0169960:five_prime_UTR
ATTCTCTTCAGTGTCAATTT+AGG 0.289407 1_4:-53500315 Msa0169960:five_prime_UTR
AATGAGTTGATTGTCATAAC+TGG 0.290846 1_4:-53500616 Msa0169960:five_prime_UTR
TGGCTATTGAGAAAATTTAT+AGG 0.291969 1_4:+53497913 None:intergenic
AATTCAATCAAGTAATTTGA+TGG 0.299534 1_4:-53500225 Msa0169960:five_prime_UTR
TTAAGACTGAAACCTTTATC+TGG 0.299755 1_4:+53499920 None:intergenic
ATGACTTCAAAACCAGTCTT+TGG 0.306670 1_4:+53500070 None:intergenic
CCTGTATCATGTTCTTGATA+TGG 0.316401 1_4:+53499665 None:intergenic
ATCCTCTATCTGAAATAGTT+TGG 0.324431 1_4:-53499946 Msa0169960:CDS
TCTTGATATGGTGTATATTC+TGG 0.346161 1_4:+53499677 None:intergenic
TGGTCTGATGGTATTGGCTT+GGG 0.347396 1_4:-53500419 Msa0169960:five_prime_UTR
TGTTTGTTGGCATTGTTTGA+TGG 0.368003 1_4:+53497554 None:intergenic
AGCTAAAATATCTGAGATAA+TGG 0.370067 1_4:-53499140 Msa0169960:CDS
CCTTCTTTGTAATGTTTCCT+TGG 0.372511 1_4:+53498657 None:intergenic
TCTGTGAAATACTCATTTGA+TGG 0.376868 1_4:-53500549 Msa0169960:five_prime_UTR
AAAGTACACACCTCTTTGTT+TGG 0.378695 1_4:+53501258 None:intergenic
ATGAAACATCACATTAATAT+AGG 0.381042 1_4:+53500587 None:intergenic
CTTCTTTACATCCTCAGGTT+AGG 0.381480 1_4:-53497936 Msa0169960:CDS
TAAGAAAATGATAGGTTTCT+GGG 0.387202 1_4:-53496021 Msa0169960:three_prime_UTR
ACATAAAAGATTCCAGTCTA+AGG 0.388544 1_4:+53500801 None:intergenic
ATAGTTTGGACTCCAGATAA+AGG 0.389342 1_4:-53499932 Msa0169960:CDS
TGCTGGAGGAACATCTGATT+TGG 0.391359 1_4:-53499239 Msa0169960:CDS
TTTGAAAACTATCATAATCC+TGG 0.393605 1_4:-53498333 Msa0169960:CDS
GTAAATTACCAACTGGACTT+TGG 0.394116 1_4:+53498727 None:intergenic
TCAAGATGAGGAGAAGTCTT+TGG 0.394857 1_4:-53498142 Msa0169960:CDS
TTTAGGTCAATTTAGGTCTC+AGG 0.404800 1_4:-53500342 Msa0169960:intron
TTGGAGAAAATTAACTCTGC+TGG 0.405206 1_4:-53499256 Msa0169960:CDS
TGACTTTCATTCTTATTGTA+TGG 0.410801 1_4:+53498363 None:intergenic
CTCTTCAGTGTCAATTTAGG+TGG 0.411126 1_4:-53500312 Msa0169960:five_prime_UTR
TATTTCAGATAGAGGATCAT+TGG 0.411235 1_4:+53499952 None:intergenic
GAACACATGATTGAAGATAA+AGG 0.411777 1_4:-53498573 Msa0169960:CDS
TCGGGTTGGTCTGATGGTAT+TGG 0.416116 1_4:-53500425 Msa0169960:five_prime_UTR
ATGTTTGTTTCACGTGATCA+TGG 0.420997 1_4:-53501014 Msa0169960:five_prime_UTR
AAAATATTGTGAATTTAGTA+AGG 0.424454 1_4:+53500919 None:intergenic
GTGAGATGCATCTTATTTCA+AGG 0.425141 1_4:+53500450 None:intergenic
TGGTAGACTATTCTGTTTGT+TGG 0.430093 1_4:+53497541 None:intergenic
TCCATGTTTGCAAAGAGGTT+AGG 0.431116 1_4:-53497579 Msa0169960:three_prime_UTR
TCATGTCAATTTCCTTAGAC+TGG 0.431825 1_4:-53500813 Msa0169960:five_prime_UTR
CGATGTTGAACCTAGTAGTA+TGG 0.433354 1_4:-53499852 Msa0169960:CDS
TTGGTCTGATGGTATTGGCT+TGG 0.435266 1_4:-53500420 Msa0169960:five_prime_UTR
TCATAGCTCATTCATGAACT+TGG 0.436526 1_4:-53498199 Msa0169960:CDS
GGCCATCGAAGGTGGCGATC+AGG 0.439496 1_4:+53498102 None:intergenic
TGAACTTGTAAATTACCAAC+TGG 0.441384 1_4:+53498720 None:intergenic
AGCTGCTTCAATTTCAATGC+AGG 0.443120 1_4:+53499159 None:intergenic
GTGTTCTTCTTTACATCCTC+AGG 0.443827 1_4:-53497941 Msa0169960:CDS
GTCCAAACTATTTCAGATAG+AGG 0.446372 1_4:+53499944 None:intergenic
ATCACCCGGCATTAATCATT+CGG 0.448847 1_4:-53498523 Msa0169960:CDS
TTGACGCGTTAATGCTTCAT+AGG 0.450951 1_4:-53500654 Msa0169960:five_prime_UTR
CTTCTCATCTTTAAGACCAA+TGG 0.453090 1_4:+53497683 None:intergenic
TTGTAATGTTTCCTTGGTGA+AGG 0.453555 1_4:+53498663 None:intergenic
AAAGAGGCTTCTTCTTCCAT+TGG 0.453603 1_4:-53497699 Msa0169960:three_prime_UTR
CCACCTTCGATGGCCTTACA+AGG 0.455789 1_4:-53498094 Msa0169960:CDS
GCATCGATACTTCTTATTGA+AGG 0.456704 1_4:-53500765 Msa0169960:five_prime_UTR
AATTTACAAGTTCATCAAGA+TGG 0.458602 1_4:-53498711 Msa0169960:CDS
CCAAGGAAACATTACAAAGA+AGG 0.463419 1_4:-53498657 Msa0169960:CDS
TGCACTAAAACGTCTTCTAC+AGG 0.464095 1_4:+53499788 None:intergenic
GGAACATCTGATTTGGCAAA+TGG 0.468310 1_4:-53499232 Msa0169960:CDS
TTATAGGTTACTCATGAGTA+AGG 0.474356 1_4:+53500246 None:intergenic
ACAATATGCTGATAACCAAT+TGG 0.476134 1_4:-53497760 Msa0169960:three_prime_UTR
AGGAGAATTTAATGAACCAC+TGG 0.482273 1_4:-53499204 Msa0169960:CDS
GCCTTACAAGGGTCAAGCTC+CGG 0.484930 1_4:-53498082 Msa0169960:CDS
TGATTTGGCAAATGGTCAAA+AGG 0.486780 1_4:-53499224 Msa0169960:CDS
TCCGGAGCTTGACCCTTGTA+AGG 0.489924 1_4:+53498081 None:intergenic
TGTTTGTTTCACGTGATCAT+GGG 0.491716 1_4:-53501013 Msa0169960:five_prime_UTR
GGACTGAAAATTGGAATTGA+AGG 0.494566 1_4:+53498047 None:intergenic
CTCAAAACACTGACAATATG+TGG 0.496970 1_4:+53498026 None:intergenic
TCACACTCGGGTTGGTCTGA+TGG 0.498997 1_4:-53500431 Msa0169960:five_prime_UTR
AAGAGTGACGTTTCTTCGAC+AGG 0.500026 1_4:-53499743 Msa0169960:CDS
GAAACATTACAAAGAAGGCT+TGG 0.503191 1_4:-53498652 Msa0169960:CDS
CTTCGACAGGTACTCCTGCT+AGG 0.511003 1_4:-53499730 Msa0169960:CDS
GTGCTCATACTCAAGGTCTC+AGG 0.514168 1_4:-53500386 Msa0169960:five_prime_UTR
AATATCTGAGATAATGGAAG+AGG 0.514653 1_4:-53499134 Msa0169960:CDS
GATAAAGGTTCTAATCCTCT+AGG 0.516529 1_4:-53498558 Msa0169960:CDS
AATAGAAAAGATACGGTACC+GGG 0.518170 1_4:+53501051 None:intergenic
ATTGAGAGATTCAGAGGCAA+TGG 0.519119 1_4:-53497604 Msa0169960:three_prime_UTR
CATTGGTCTTAAAGATGAGA+AGG 0.529065 1_4:-53497682 Msa0169960:three_prime_UTR
TGGTGTATATTCTGGAAAGA+TGG 0.529676 1_4:+53499685 None:intergenic
ATTTACAAGTTCATCAAGAT+GGG 0.530667 1_4:-53498710 Msa0169960:CDS
TTATTCTAGTCAATGTCATA+AGG 0.530823 1_4:-53500041 Msa0169960:CDS
AAGAAAATGAAACCAAAGAC+TGG 0.532411 1_4:-53500082 Msa0169960:exon
GAATAGAAAAGATACGGTAC+CGG 0.532526 1_4:+53501050 None:intergenic
GTATGAAAGAATATATTACA+TGG 0.534071 1_4:+53501110 None:intergenic
TCGCTTGTTGAATTCCTAGC+AGG 0.535881 1_4:+53499716 None:intergenic
TAGCATCATCTCATTGACCT+TGG 0.536137 1_4:+53498386 None:intergenic
CCATATCAAGAACATGATAC+AGG 0.536521 1_4:-53499665 Msa0169960:intron
ATCCTGATCGCCACCTTCGA+TGG 0.538722 1_4:-53498104 Msa0169960:CDS
AATCAAAATTAGCATGTGTA+GGG 0.540979 1_4:+53500166 None:intergenic
ACCTAACCTCTTTGCAAACA+TGG 0.543122 1_4:+53497578 None:intergenic
TCTTCAGTGTCAATTTAGGT+GGG 0.543315 1_4:-53500311 Msa0169960:five_prime_UTR
AAGTATACATAAATTGACTA+AGG 0.544426 1_4:+53501187 None:intergenic
TTCTCATTTGAATTACTGCA+AGG 0.546462 1_4:-53497799 Msa0169960:three_prime_UTR
AATAAGATGCATCTCACACT+CGG 0.548373 1_4:-53500444 Msa0169960:five_prime_UTR
AATATAGAATAGAAAAGATA+CGG 0.550149 1_4:+53501044 None:intergenic
TTCGAGATTGAGAGATTCAG+AGG 0.550691 1_4:-53497610 Msa0169960:three_prime_UTR
CTAAGGAAATTGACATGACT+AGG 0.551663 1_4:+53500818 None:intergenic
AGAGCAAGAACCATACTACT+AGG 0.554225 1_4:+53499842 None:intergenic
AATGGAATTGTATATTGGGT+AGG 0.554982 1_4:+53495872 None:intergenic
AGATGGGTCTAAACTTAGCA+TGG 0.563633 1_4:-53498694 Msa0169960:CDS
TTGCAAACTGAGTCAAGTGC+AGG 0.567039 1_4:-53500013 Msa0169960:CDS
TGTACTGCAGGAAGACATCA+TGG 0.567554 1_4:-53496118 Msa0169960:intron
TTCAACATCGCGCAAAAGCG+AGG 0.569210 1_4:+53499865 None:intergenic
TGGTTTCCATGTTTGCAAAG+AGG 0.574375 1_4:-53497584 Msa0169960:three_prime_UTR
TTTACAAAATAGAATCAGCA+AGG 0.574771 1_4:-53497853 Msa0169960:three_prime_UTR
ACAAGAATGTCTCATCAAGT+AGG 0.578856 1_4:-53497994 Msa0169960:CDS
TGAGCTATGATGATTAACAT+TGG 0.579369 1_4:+53498212 None:intergenic
CAATCAAAATTAGCATGTGT+AGG 0.579882 1_4:+53500165 None:intergenic
GACCCTTGTAAGGCCATCGA+AGG 0.580322 1_4:+53498091 None:intergenic
TGGGAGTGTGCTCATACTCA+AGG 0.581554 1_4:-53500393 Msa0169960:five_prime_UTR
TTTGATGGTTTAGTGTTGAG+TGG 0.582265 1_4:-53500210 Msa0169960:five_prime_UTR
TTTGCGCATATAACAGCAAG+AGG 0.582464 1_4:+53499764 None:intergenic
ATTGGTCTTAAAGATGAGAA+GGG 0.585207 1_4:-53497681 Msa0169960:three_prime_UTR
CCTTGTAAGGCCATCGAAGG+TGG 0.590280 1_4:+53498094 None:intergenic
GATGCATCTCACACTCGGGT+TGG 0.595590 1_4:-53500439 Msa0169960:five_prime_UTR
CTTCAGTTCTCAGCAGCAGA+AGG 0.602153 1_4:+53500121 None:intergenic
TTGGTTTCTAACATGACTAG+AGG 0.603833 1_4:-53498180 Msa0169960:CDS
GAGAAAATTAACTCTGCTGG+AGG 0.604426 1_4:-53499253 Msa0169960:CDS
CAGATCAACCAAAGTCCAGT+TGG 0.604525 1_4:-53498735 Msa0169960:CDS
ATGAGTTGATTGTCATAACT+GGG 0.610790 1_4:-53500615 Msa0169960:five_prime_UTR
CACAAATATTCTTCTCCCAG+TGG 0.620295 1_4:+53499188 None:intergenic
GCGTCCGATCCGATGTGTGT+CGG 0.620727 1_4:-53500741 Msa0169960:five_prime_UTR
CAGCAACGTTAAATGAGTTG+AGG 0.626104 1_4:+53496084 None:intergenic
GGATACTAGTGTTGACAACA+TGG 0.626835 1_4:-53498631 Msa0169960:CDS
GGAACATATTTGATATCACC+CGG 0.627350 1_4:-53498537 Msa0169960:CDS
AAGAAGAACACCGTCTGCAG+AGG 0.634486 1_4:+53497953 None:intergenic
GGAGAATTTAATGAACCACT+GGG 0.634669 1_4:-53499203 Msa0169960:CDS
CAAGCAATAGCCTCTGCAGA+CGG 0.634882 1_4:-53497963 Msa0169960:CDS
TGTTTCTGGAAATTCTACCC+CGG 0.634939 1_4:-53501069 Msa0169960:five_prime_UTR
GTTTGTTTCACGTGATCATG+GGG 0.636921 1_4:-53501012 Msa0169960:five_prime_UTR
AGATGAGAAGGGAAACAATG+AGG 0.641689 1_4:-53497670 Msa0169960:three_prime_UTR
CTCACAATCTAGTCAAGATG+AGG 0.644826 1_4:-53498154 Msa0169960:CDS
ATTACGACACCGACACACAT+CGG 0.645224 1_4:+53500732 None:intergenic
TCAAGCCATGTTTACCTGTG+TGG 0.651284 1_4:+53497521 None:intergenic
GCATGTGTAGGGTATGAATG+TGG 0.653001 1_4:+53500177 None:intergenic
CACCTTCGATGGCCTTACAA+GGG 0.654668 1_4:-53498093 Msa0169960:CDS
GACACCGACACACATCGGAT+CGG 0.654809 1_4:+53500737 None:intergenic
TATTTCCTAACCAAACAAAG+AGG 0.654876 1_4:-53501268 None:intergenic
ATAAGATGCATCTCACACTC+GGG 0.659150 1_4:-53500443 Msa0169960:five_prime_UTR
GTCTTCTACAGGTTTATCTG+TGG 0.662607 1_4:+53499799 None:intergenic
GATATCAAATATGTTCCTAG+AGG 0.673634 1_4:+53498543 None:intergenic
AACAGAATAGTCTACCACAC+AGG 0.676350 1_4:-53497535 Msa0169960:intron
TGGAACAAAATCCTTCACCA+AGG 0.714111 1_4:-53498674 Msa0169960:CDS
ATAGAAAAGATACGGTACCG+GGG 0.729333 1_4:+53501052 None:intergenic
AAATTTATAGGCCTAACCTG+AGG 0.743911 1_4:+53497925 None:intergenic
TACTAGTGTTGACAACATGG+TGG 0.817206 1_4:-53498628 Msa0169960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATACTCTTTTAATAAAT+TGG + chr1_4:53497683-53497702 None:intergenic 10.0%
!!! TCTATTATTTTTTTTTTTGT+TGG - chr1_4:53500147-53500166 Msa0169960:five_prime_UTR 10.0%
!!! CTATTATTTTTTTTTTTGTT+GGG - chr1_4:53500148-53500167 Msa0169960:five_prime_UTR 10.0%
!! AATATAGAATAGAAAAGATA+CGG + chr1_4:53496055-53496074 None:intergenic 15.0%
!!! ATAATTAGCTTCAAATTATA+AGG - chr1_4:53496129-53496148 Msa0169960:intron 15.0%
!! AAAATATTGTGAATTTAGTA+AGG + chr1_4:53496180-53496199 None:intergenic 15.0%
!! AAATTACTTGATTGAATTAT+AGG + chr1_4:53496869-53496888 None:intergenic 15.0%
!! AAATTAGTTAAATAGTTCAT+TGG - chr1_4:53497719-53497738 Msa0169960:three_prime_UTR 15.0%
!! AATTAGTTAAATAGTTCATT+GGG - chr1_4:53497720-53497739 Msa0169960:three_prime_UTR 15.0%
!! TTTAGATATACAAAATAGAA+TGG + chr1_4:53498311-53498330 None:intergenic 15.0%
!! AGATATTAATCAATAACAAA+TGG + chr1_4:53500344-53500363 None:intergenic 15.0%
!! AATATCTATAATCGAATAAA+GGG + chr1_4:53500870-53500889 None:intergenic 15.0%
!! AAATATCTATAATCGAATAA+AGG + chr1_4:53500871-53500890 None:intergenic 15.0%
!! ATCAAAAATAAGAAAATGAT+AGG - chr1_4:53501067-53501086 Msa0169960:five_prime_UTR 15.0%
!! AAATAGAAACAATTCAAAAA+TGG + chr1_4:53501245-53501264 None:intergenic 15.0%
!!! CTCTTTCAATTTTCTATTTT+CGG - chr1_4:53495870-53495889 Msa0169960:three_prime_UTR 20.0%
!! AAGTATACATAAATTGACTA+AGG + chr1_4:53495912-53495931 None:intergenic 20.0%
!! GTATGAAAGAATATATTACA+TGG + chr1_4:53495989-53496008 None:intergenic 20.0%
!! ATGAAACATCACATTAATAT+AGG + chr1_4:53496512-53496531 None:intergenic 20.0%
!! AATTCAATCAAGTAATTTGA+TGG - chr1_4:53496871-53496890 Msa0169960:intron 20.0%
!! ATCATGATAGTATCTTAAAA+TGG + chr1_4:53498045-53498064 None:intergenic 20.0%
!!! TTTAAGATACTATCATGATT+TGG - chr1_4:53498046-53498065 Msa0169960:CDS 20.0%
!! ATGATTGTTATCTGAAAAAT+AGG - chr1_4:53499638-53499657 Msa0169960:intron 20.0%
!!! ATCAATCTTATTTATAACCT+AGG + chr1_4:53500401-53500420 None:intergenic 20.0%
!! AAAAATTGATATCTATGTGT+TGG + chr1_4:53500435-53500454 None:intergenic 20.0%
!!! GATATGTGAAAGTATATATT+AGG - chr1_4:53500487-53500506 Msa0169960:five_prime_UTR 20.0%
!!! TTACGGTATTGAATAATTTT+TGG + chr1_4:53500738-53500757 None:intergenic 20.0%
!! TATTACAATTTACATGAACA+TGG - chr1_4:53500899-53500918 Msa0169960:five_prime_UTR 20.0%
!! CAAAAATGGAATTGTATATT+GGG + chr1_4:53501231-53501250 None:intergenic 20.0%
!! TCAAAAATGGAATTGTATAT+TGG + chr1_4:53501232-53501251 None:intergenic 20.0%
!! CTCATTTGATGGATAATTTA+AGG - chr1_4:53496558-53496577 Msa0169960:intron 25.0%
! AATCAAAATTAGCATGTGTA+GGG + chr1_4:53496933-53496952 None:intergenic 25.0%
! TTGGAATAATATCTCATTTC+AGG - chr1_4:53496951-53496970 Msa0169960:intron 25.0%
! TTATTCTAGTCAATGTCATA+AGG - chr1_4:53497055-53497074 Msa0169960:intron 25.0%
! ATTAATTAAAGTGACACTAG+TGG + chr1_4:53497643-53497662 None:intergenic 25.0%
!!! TTGAGCAAAAAAGGTTTTAA+AGG + chr1_4:53497786-53497805 None:intergenic 25.0%
!! AGCTAAAATATCTGAGATAA+TGG - chr1_4:53497956-53497975 Msa0169960:CDS 25.0%
! AACAAATCTTCTACTATTTC+AGG - chr1_4:53497987-53498006 Msa0169960:CDS 25.0%
! AATTTACAAGTTCATCAAGA+TGG - chr1_4:53498385-53498404 Msa0169960:CDS 25.0%
! ATTTACAAGTTCATCAAGAT+GGG - chr1_4:53498386-53498405 Msa0169960:CDS 25.0%
! CATTAATCATTCGGAAAAAA+TGG - chr1_4:53498582-53498601 Msa0169960:CDS 25.0%
!!! GGATTTGTTTTTATTATCGT+TGG + chr1_4:53498692-53498711 None:intergenic 25.0%
! CGATAATAAAAACAAATCCA+AGG - chr1_4:53498693-53498712 Msa0169960:CDS 25.0%
! TGACTTTCATTCTTATTGTA+TGG + chr1_4:53498736-53498755 None:intergenic 25.0%
! TTTGAAAACTATCATAATCC+TGG - chr1_4:53498763-53498782 Msa0169960:intron 25.0%
! TGGCTATTGAGAAAATTTAT+AGG + chr1_4:53499186-53499205 None:intergenic 25.0%
! TTTACAAAATAGAATCAGCA+AGG - chr1_4:53499243-53499262 Msa0169960:CDS 25.0%
! CAGTAATTCAAATGAGAAAT+TGG + chr1_4:53499295-53499314 None:intergenic 25.0%
!!! GAATTGTTTTATCAACAAAG+AGG - chr1_4:53499381-53499400 Msa0169960:intron 25.0%
!!! CACATTATTGATTTACTTCA+TGG + chr1_4:53499618-53499637 None:intergenic 25.0%
! AACAAATGGTTCACAATTAA+AGG + chr1_4:53500330-53500349 None:intergenic 25.0%
!! ATGTCATATTCATCTTTTTG+TGG - chr1_4:53500460-53500479 Msa0169960:five_prime_UTR 25.0%
!! ATATTCATCTTTTTGTGGTT+TGG - chr1_4:53500465-53500484 Msa0169960:five_prime_UTR 25.0%
!!! TCTTGTCCTTTATTTTTTAG+CGG + chr1_4:53500523-53500542 None:intergenic 25.0%
!!! GTTTTAGAAAACTTGTATGT+GGG + chr1_4:53500677-53500696 None:intergenic 25.0%
!!! TGTTTTAGAAAACTTGTATG+TGG + chr1_4:53500678-53500697 None:intergenic 25.0%
!! CAACACAAGACAAAATTTTA+CGG + chr1_4:53500755-53500774 None:intergenic 25.0%
!!! GGATATCAACTTTTTTGTTT+TGG - chr1_4:53500920-53500939 Msa0169960:five_prime_UTR 25.0%
!! TTTTCTGTCATATCTTTAGT+TGG + chr1_4:53501046-53501065 None:intergenic 25.0%
! ATAAGAAAATGATAGGTTTC+TGG - chr1_4:53501074-53501093 Msa0169960:five_prime_UTR 25.0%
! TAAGAAAATGATAGGTTTCT+GGG - chr1_4:53501075-53501094 Msa0169960:five_prime_UTR 25.0%
ACATAAAAGATTCCAGTCTA+AGG + chr1_4:53496298-53496317 None:intergenic 30.0%
!! AATGAGTTGATTGTCATAAC+TGG - chr1_4:53496480-53496499 Msa0169960:intron 30.0%
!! ATGAGTTGATTGTCATAACT+GGG - chr1_4:53496481-53496500 Msa0169960:intron 30.0%
TCTGTGAAATACTCATTTGA+TGG - chr1_4:53496547-53496566 Msa0169960:intron 30.0%
ATTCTCTTCAGTGTCAATTT+AGG - chr1_4:53496737-53496756 Msa0169960:intron 30.0%
GTGTCAATTTAGGTCAATTT+AGG - chr1_4:53496747-53496766 Msa0169960:intron 30.0%
ATTCTCTTCAGTGTCAATTT+AGG - chr1_4:53496737-53496756 Msa0169960:intron 30.0%
TTATAGGTTACTCATGAGTA+AGG + chr1_4:53496853-53496872 None:intergenic 30.0%
CAATCAAAATTAGCATGTGT+AGG + chr1_4:53496934-53496953 None:intergenic 30.0%
!! CTACACATGCTAATTTTGAT+TGG - chr1_4:53496932-53496951 Msa0169960:intron 30.0%
AAGAAAATGAAACCAAAGAC+TGG - chr1_4:53497014-53497033 Msa0169960:intron 30.0%
TATTTCAGATAGAGGATCAT+TGG + chr1_4:53497147-53497166 None:intergenic 30.0%
! ATCCTCTATCTGAAATAGTT+TGG - chr1_4:53497150-53497169 Msa0169960:intron 30.0%
TTAAGACTGAAACCTTTATC+TGG + chr1_4:53497179-53497198 None:intergenic 30.0%
TCTTGATATGGTGTATATTC+TGG + chr1_4:53497422-53497441 None:intergenic 30.0%
GGTAAATATAACATCCCTTA+TGG - chr1_4:53497452-53497471 Msa0169960:intron 30.0%
ATAGTTCATTGGGACTTATT+AGG - chr1_4:53497730-53497749 Msa0169960:three_prime_UTR 30.0%
ACATCATGATTGAGCAAAAA+AGG + chr1_4:53497795-53497814 None:intergenic 30.0%
!! AATATCTGAGATAATGGAAG+AGG - chr1_4:53497962-53497981 Msa0169960:CDS 30.0%
!! GTATTTGCTGTTTGATTCTT+TGG - chr1_4:53498009-53498028 Msa0169960:CDS 30.0%
TGAACTTGTAAATTACCAAC+TGG + chr1_4:53498379-53498398 None:intergenic 30.0%
GAACACATGATTGAAGATAA+AGG - chr1_4:53498523-53498542 Msa0169960:CDS 30.0%
GATATCAAATATGTTCCTAG+AGG + chr1_4:53498556-53498575 None:intergenic 30.0%
! TTTTTCCGAATGATTAATGC+CGG + chr1_4:53498581-53498600 None:intergenic 30.0%
! TCATAATCCTGGATTGTTTT+TGG - chr1_4:53498774-53498793 Msa0169960:intron 30.0%
TGAGCTATGATGATTAACAT+TGG + chr1_4:53498887-53498906 None:intergenic 30.0%
!! TTGAAGGAATTTTTAAGCTC+CGG + chr1_4:53499036-53499055 None:intergenic 30.0%
! ACAATATGTGGACTGAAAAT+TGG + chr1_4:53499061-53499080 None:intergenic 30.0%
!!! TGTCAGTGTTTTGAGAATTT+CGG - chr1_4:53499078-53499097 Msa0169960:intron 30.0%
!! GTGATATTTTTCAGTGTTCA+TGG + chr1_4:53499206-53499225 None:intergenic 30.0%
TTCTCATTTGAATTACTGCA+AGG - chr1_4:53499297-53499316 Msa0169960:intron 30.0%
ACAATATGCTGATAACCAAT+TGG - chr1_4:53499336-53499355 Msa0169960:intron 30.0%
! TTTTAGTCTCAATGACCAAT+TGG + chr1_4:53499354-53499373 None:intergenic 30.0%
!! ATTGGTCTTAAAGATGAGAA+GGG - chr1_4:53499415-53499434 Msa0169960:intron 30.0%
!! TTTGTCGATTCTATGACAAA+AGG - chr1_4:53499769-53499788 Msa0169960:CDS 30.0%
!! TTGTCGATTCTATGACAAAA+GGG - chr1_4:53499770-53499789 Msa0169960:CDS 30.0%
ACTTTATTAAGTCTGTGTTG+TGG - chr1_4:53500206-53500225 Msa0169960:five_prime_UTR 30.0%
ATATGACTTTATCCTTCAAG+TGG - chr1_4:53500298-53500317 Msa0169960:five_prime_UTR 30.0%
GTTGATCCGCTAAAAAATAA+AGG - chr1_4:53500514-53500533 Msa0169960:five_prime_UTR 30.0%
!!! TACGATTTTTTGTGGACAAA+AGG + chr1_4:53500710-53500729 None:intergenic 30.0%
!!! TGGTCTTATACGATTTTTTG+TGG + chr1_4:53500718-53500737 None:intergenic 30.0%
!!! ACTTTTTTCAACAAGTCTGA+AGG + chr1_4:53500804-53500823 None:intergenic 30.0%
AATGGAATTGTATATTGGGT+AGG + chr1_4:53501227-53501246 None:intergenic 30.0%
AAAGTACACACCTCTTTGTT+TGG + chr1_4:53495841-53495860 None:intergenic 35.0%
AACATGTATGCTTCTGTTTC+TGG - chr1_4:53496013-53496032 Msa0169960:three_prime_UTR 35.0%
AATAGAAAAGATACGGTACC+GGG + chr1_4:53496048-53496067 None:intergenic 35.0%
GAATAGAAAAGATACGGTAC+CGG + chr1_4:53496049-53496068 None:intergenic 35.0%
ATGTTTGTTTCACGTGATCA+TGG - chr1_4:53496082-53496101 Msa0169960:three_prime_UTR 35.0%
TGTTTGTTTCACGTGATCAT+GGG - chr1_4:53496083-53496102 Msa0169960:three_prime_UTR 35.0%
CTAAGGAAATTGACATGACT+AGG + chr1_4:53496281-53496300 None:intergenic 35.0%
TCATGTCAATTTCCTTAGAC+TGG - chr1_4:53496283-53496302 Msa0169960:intron 35.0%
! CTGGAATCTTTTATGTTCAG+AGG - chr1_4:53496302-53496321 Msa0169960:intron 35.0%
! GCATCGATACTTCTTATTGA+AGG - chr1_4:53496331-53496350 Msa0169960:intron 35.0%
! GTGAGATGCATCTTATTTCA+AGG + chr1_4:53496649-53496668 None:intergenic 35.0%
AATAAGATGCATCTCACACT+CGG - chr1_4:53496652-53496671 Msa0169960:intron 35.0%
TTTAGGTCAATTTAGGTCTC+AGG - chr1_4:53496754-53496773 Msa0169960:intron 35.0%
TCTTCAGTGTCAATTTAGGT+GGG - chr1_4:53496741-53496760 Msa0169960:intron 35.0%
! TTTGATGGTTTAGTGTTGAG+TGG - chr1_4:53496886-53496905 Msa0169960:intron 35.0%
ATGACTTCAAAACCAGTCTT+TGG + chr1_4:53497029-53497048 None:intergenic 35.0%
GTCCAAACTATTTCAGATAG+AGG + chr1_4:53497155-53497174 None:intergenic 35.0%
ATAGTTTGGACTCCAGATAA+AGG - chr1_4:53497164-53497183 Msa0169960:intron 35.0%
! TGGTGTATATTCTGGAAAGA+TGG + chr1_4:53497414-53497433 None:intergenic 35.0%
CCTGTATCATGTTCTTGATA+TGG + chr1_4:53497434-53497453 None:intergenic 35.0%
CCATATCAAGAACATGATAC+AGG - chr1_4:53497431-53497450 Msa0169960:intron 35.0%
TACATCTGTAGGATCCATAA+GGG + chr1_4:53497469-53497488 None:intergenic 35.0%
TTATGGATCCTACAGATGTA+GGG - chr1_4:53497469-53497488 Msa0169960:intron 35.0%
TGAGTTTGCAGTAAGAACTT+TGG - chr1_4:53497497-53497516 Msa0169960:intron 35.0%
! GAAGTATTTACTTTGTCACG+AGG - chr1_4:53497538-53497557 Msa0169960:three_prime_UTR 35.0%
! GATTTGAATTTTGTCCCTTC+AGG + chr1_4:53497597-53497616 None:intergenic 35.0%
TTGGAGAAAATTAACTCTGC+TGG - chr1_4:53497840-53497859 Msa0169960:three_prime_UTR 35.0%
! TGATTTGGCAAATGGTCAAA+AGG - chr1_4:53497872-53497891 Msa0169960:three_prime_UTR 35.0%
AGGAGAATTTAATGAACCAC+TGG - chr1_4:53497892-53497911 Msa0169960:exon 35.0%
GGAGAATTTAATGAACCACT+GGG - chr1_4:53497893-53497912 Msa0169960:exon 35.0%
AATCCAACACTGCATATCAA+AGG - chr1_4:53498115-53498134 Msa0169960:CDS 35.0%
GTAAATTACCAACTGGACTT+TGG + chr1_4:53498372-53498391 None:intergenic 35.0%
TTGTAATGTTTCCTTGGTGA+AGG + chr1_4:53498436-53498455 None:intergenic 35.0%
CCTTCTTTGTAATGTTTCCT+TGG + chr1_4:53498442-53498461 None:intergenic 35.0%
CCAAGGAAACATTACAAAGA+AGG - chr1_4:53498439-53498458 Msa0169960:CDS 35.0%
GAAACATTACAAAGAAGGCT+TGG - chr1_4:53498444-53498463 Msa0169960:CDS 35.0%
! GATAAAGGTTCTAATCCTCT+AGG - chr1_4:53498538-53498557 Msa0169960:CDS 35.0%
GGAACATATTTGATATCACC+CGG - chr1_4:53498559-53498578 Msa0169960:CDS 35.0%
! TTTTCCGAATGATTAATGCC+GGG + chr1_4:53498580-53498599 None:intergenic 35.0%
TCATAGCTCATTCATGAACT+TGG - chr1_4:53498897-53498916 Msa0169960:intron 35.0%
TTGGTTTCTAACATGACTAG+AGG - chr1_4:53498916-53498935 Msa0169960:intron 35.0%
GGACTGAAAATTGGAATTGA+AGG + chr1_4:53499052-53499071 None:intergenic 35.0%
CTCAAAACACTGACAATATG+TGG + chr1_4:53499073-53499092 None:intergenic 35.0%
ACAAGAATGTCTCATCAAGT+AGG - chr1_4:53499102-53499121 Msa0169960:intron 35.0%
AAATTTATAGGCCTAACCTG+AGG + chr1_4:53499174-53499193 None:intergenic 35.0%
!! CTTCTCATCTTTAAGACCAA+TGG + chr1_4:53499416-53499435 None:intergenic 35.0%
!! CATTGGTCTTAAAGATGAGA+AGG - chr1_4:53499414-53499433 Msa0169960:intron 35.0%
GAATCTCTCAATCTCGAAAA+AGG + chr1_4:53499484-53499503 None:intergenic 35.0%
! TGTTTGTTGGCATTGTTTGA+TGG + chr1_4:53499545-53499564 None:intergenic 35.0%
TGGTAGACTATTCTGTTTGT+TGG + chr1_4:53499558-53499577 None:intergenic 35.0%
!! TGTCGATTCTATGACAAAAG+GGG - chr1_4:53499771-53499790 Msa0169960:CDS 35.0%
GATCATTGACAACAATTGCA+GGG + chr1_4:53499892-53499911 None:intergenic 35.0%
CTCAACCAATGAATGAAGAT+CGG + chr1_4:53499991-53500010 None:intergenic 35.0%
! TTGTGGACAAAAGGCTATTT+TGG + chr1_4:53500701-53500720 None:intergenic 35.0%
TTGCACTATATGTTTCCTAG+TGG - chr1_4:53500843-53500862 Msa0169960:five_prime_UTR 35.0%
GTACAAACAAGATAGAGAGA+TGG + chr1_4:53500963-53500982 None:intergenic 35.0%
!! TGTTTCTGGAAATTCTACCC+CGG - chr1_4:53496027-53496046 Msa0169960:three_prime_UTR 40.0%
ATAGAAAAGATACGGTACCG+GGG + chr1_4:53496047-53496066 None:intergenic 40.0%
GTTTGTTTCACGTGATCATG+GGG - chr1_4:53496084-53496103 Msa0169960:three_prime_UTR 40.0%
TTGACGCGTTAATGCTTCAT+AGG - chr1_4:53496442-53496461 Msa0169960:intron 40.0%
ATAAGATGCATCTCACACTC+GGG - chr1_4:53496653-53496672 Msa0169960:intron 40.0%
!! ATGGTATTGGCTTGGGATTT+GGG - chr1_4:53496684-53496703 Msa0169960:intron 40.0%
CTCTTCAGTGTCAATTTAGG+TGG - chr1_4:53496740-53496759 Msa0169960:intron 40.0%
CGATGTTGAACCTAGTAGTA+TGG - chr1_4:53497244-53497263 Msa0169960:intron 40.0%
AGAGCAAGAACCATACTACT+AGG + chr1_4:53497257-53497276 None:intergenic 40.0%
GTCTTCTACAGGTTTATCTG+TGG + chr1_4:53497300-53497319 None:intergenic 40.0%
TGCACTAAAACGTCTTCTAC+AGG + chr1_4:53497311-53497330 None:intergenic 40.0%
TTTGCGCATATAACAGCAAG+AGG + chr1_4:53497335-53497354 None:intergenic 40.0%
CTACATCTGTAGGATCCATA+AGG + chr1_4:53497470-53497489 None:intergenic 40.0%
CTTATGGATCCTACAGATGT+AGG - chr1_4:53497468-53497487 Msa0169960:intron 40.0%
TCACATTTCCCTACATCTGT+AGG + chr1_4:53497480-53497499 None:intergenic 40.0%
!! TTTTGTCCCTTCAGGTTACA+CGG + chr1_4:53497589-53497608 None:intergenic 40.0%
GGGACAAAATTCAAATCCCT+CGG - chr1_4:53497600-53497619 Msa0169960:three_prime_UTR 40.0%
GGACAAAATTCAAATCCCTC+GGG - chr1_4:53497601-53497620 Msa0169960:three_prime_UTR 40.0%
GACAAAATTCAAATCCCTCG+GGG - chr1_4:53497602-53497621 Msa0169960:three_prime_UTR 40.0%
AATCATGATGTTGATCTGCC+AGG - chr1_4:53497804-53497823 Msa0169960:three_prime_UTR 40.0%
TCCAAATTATCACCAGATCC+TGG + chr1_4:53497825-53497844 None:intergenic 40.0%
GAGAAAATTAACTCTGCTGG+AGG - chr1_4:53497843-53497862 Msa0169960:three_prime_UTR 40.0%
!! GGAACATCTGATTTGGCAAA+TGG - chr1_4:53497864-53497883 Msa0169960:three_prime_UTR 40.0%
CACAAATATTCTTCTCCCAG+TGG + chr1_4:53497911-53497930 None:intergenic 40.0%
AGCTGCTTCAATTTCAATGC+AGG + chr1_4:53497940-53497959 None:intergenic 40.0%
ATGCCTTTGATATGCAGTGT+TGG + chr1_4:53498121-53498140 None:intergenic 40.0%
! CTGCATATCAAAGGCATGTA+CGG - chr1_4:53498124-53498143 Msa0169960:CDS 40.0%
AGAATGCATTGTCGCATAAC+CGG + chr1_4:53498245-53498264 None:intergenic 40.0%
TCTGCATCATGACTTTCTTC+AGG - chr1_4:53498337-53498356 Msa0169960:CDS 40.0%
AGATGGGTCTAAACTTAGCA+TGG - chr1_4:53498402-53498421 Msa0169960:CDS 40.0%
TGGAACAAAATCCTTCACCA+AGG - chr1_4:53498422-53498441 Msa0169960:CDS 40.0%
!! GGATACTAGTGTTGACAACA+TGG - chr1_4:53498465-53498484 Msa0169960:CDS 40.0%
!! TACTAGTGTTGACAACATGG+TGG - chr1_4:53498468-53498487 Msa0169960:CDS 40.0%
ATCACCCGGCATTAATCATT+CGG - chr1_4:53498573-53498592 Msa0169960:CDS 40.0%
TAGCATCATCTCATTGACCT+TGG + chr1_4:53498713-53498732 None:intergenic 40.0%
CTACTTGCCAAAAACAATCC+AGG + chr1_4:53498784-53498803 None:intergenic 40.0%
!!! CTGGATTGTTTTTGGCAAGT+AGG - chr1_4:53498782-53498801 Msa0169960:intron 40.0%
CTCACAATCTAGTCAAGATG+AGG - chr1_4:53498942-53498961 Msa0169960:intron 40.0%
TCAAGATGAGGAGAAGTCTT+TGG - chr1_4:53498954-53498973 Msa0169960:intron 40.0%
GTGTTCTTCTTTACATCCTC+AGG - chr1_4:53499155-53499174 Msa0169960:CDS 40.0%
CTTCTTTACATCCTCAGGTT+AGG - chr1_4:53499160-53499179 Msa0169960:CDS 40.0%
AAAGAGGCTTCTTCTTCCAT+TGG - chr1_4:53499397-53499416 Msa0169960:intron 40.0%
AGATGAGAAGGGAAACAATG+AGG - chr1_4:53499426-53499445 Msa0169960:intron 40.0%
TTCGAGATTGAGAGATTCAG+AGG - chr1_4:53499486-53499505 Msa0169960:intron 40.0%
ATTGAGAGATTCAGAGGCAA+TGG - chr1_4:53499492-53499511 Msa0169960:intron 40.0%
TGGTTTCCATGTTTGCAAAG+AGG - chr1_4:53499512-53499531 Msa0169960:intron 40.0%
TCCATGTTTGCAAAGAGGTT+AGG - chr1_4:53499517-53499536 Msa0169960:intron 40.0%
ACCTAACCTCTTTGCAAACA+TGG + chr1_4:53499521-53499540 None:intergenic 40.0%
AACAGAATAGTCTACCACAC+AGG - chr1_4:53499561-53499580 Msa0169960:intron 40.0%
CGATCATTGACAACAATTGC+AGG + chr1_4:53499893-53499912 None:intergenic 40.0%
TTGTCAATGATCGTGATCGT+TGG - chr1_4:53499900-53499919 Msa0169960:CDS 40.0%
TAAAGGACTACACCACTTGA+AGG + chr1_4:53500313-53500332 None:intergenic 40.0%
!! AACAAAGTGTTGCATCACCT+AGG - chr1_4:53500381-53500400 Msa0169960:five_prime_UTR 40.0%
CCAGTTCTGTAGTGTTTGAT+CGG - chr1_4:53500553-53500572 Msa0169960:five_prime_UTR 40.0%
TCGGTAAAACTGACTGTTTC+AGG - chr1_4:53500572-53500591 Msa0169960:five_prime_UTR 40.0%
CGGTAAAACTGACTGTTTCA+GGG - chr1_4:53500573-53500592 Msa0169960:five_prime_UTR 40.0%
GTTGTGCTGTGATTTAGTGA+GGG + chr1_4:53500647-53500666 None:intergenic 40.0%
AGTTGTGCTGTGATTTAGTG+AGG + chr1_4:53500648-53500667 None:intergenic 40.0%
AATCGAATAAAGGGACCACT+AGG + chr1_4:53500861-53500880 None:intergenic 40.0%
!!! GTTTTGGAACTTCCCTAACT+TGG - chr1_4:53500936-53500955 Msa0169960:intron 40.0%
TAGAGAGATGGACCAAGTTA+GGG + chr1_4:53500951-53500970 None:intergenic 40.0%
ATAGAGAGATGGACCAAGTT+AGG + chr1_4:53500952-53500971 None:intergenic 40.0%
! CTCTATCTTGTTTGTACTGC+AGG - chr1_4:53500966-53500985 Msa0169960:intron 40.0%
CAGCAACGTTAAATGAGTTG+AGG + chr1_4:53501015-53501034 None:intergenic 40.0%
ATTACGACACCGACACACAT+CGG + chr1_4:53496367-53496386 None:intergenic 45.0%
!! TTGGTCTGATGGTATTGGCT+TGG - chr1_4:53496676-53496695 Msa0169960:intron 45.0%
!! TGGTCTGATGGTATTGGCTT+GGG - chr1_4:53496677-53496696 Msa0169960:intron 45.0%
!! GATGGTATTGGCTTGGGATT+TGG - chr1_4:53496683-53496702 Msa0169960:intron 45.0%
GCATGTGTAGGGTATGAATG+TGG + chr1_4:53496922-53496941 None:intergenic 45.0%
TTGCAAACTGAGTCAAGTGC+AGG - chr1_4:53497083-53497102 Msa0169960:intron 45.0%
AAGAGTGACGTTTCTTCGAC+AGG - chr1_4:53497353-53497372 Msa0169960:intron 45.0%
! TCGCTTGTTGAATTCCTAGC+AGG + chr1_4:53497383-53497402 None:intergenic 45.0%
TCAGCTCAATGGTAAGAGCT+TGG - chr1_4:53497563-53497582 Msa0169960:three_prime_UTR 45.0%
AAATTCAAATCCCTCGGGGA+TGG - chr1_4:53497606-53497625 Msa0169960:three_prime_UTR 45.0%
!! CATTTTTCAACCATCCCCGA+GGG + chr1_4:53497619-53497638 None:intergenic 45.0%
!! TCATTTTTCAACCATCCCCG+AGG + chr1_4:53497620-53497639 None:intergenic 45.0%
GCCAGGATCTGGTGATAATT+TGG - chr1_4:53497821-53497840 Msa0169960:three_prime_UTR 45.0%
TGCTGGAGGAACATCTGATT+TGG - chr1_4:53497857-53497876 Msa0169960:three_prime_UTR 45.0%
GTAACCACATGTGTCAGTGT+CGG + chr1_4:53498166-53498185 None:intergenic 45.0%
CTACATGTCAGTGTCATGTC+CGG - chr1_4:53498223-53498242 Msa0169960:CDS 45.0%
CAGATCAACCAAAGTCCAGT+TGG - chr1_4:53498361-53498380 Msa0169960:CDS 45.0%
GTCTACCACACAGGTAAACA+TGG - chr1_4:53499570-53499589 Msa0169960:intron 45.0%
TCAAGCCATGTTTACCTGTG+TGG + chr1_4:53499578-53499597 None:intergenic 45.0%
TGAGCGACTCGAATTCTCTA+TGG - chr1_4:53499858-53499877 Msa0169960:CDS 45.0%
CGACTCGAATTCTCTATGGT+CGG - chr1_4:53499862-53499881 Msa0169960:CDS 45.0%
CTCGTCCGATCTTCATTCAT+TGG - chr1_4:53499983-53500002 Msa0169960:CDS 45.0%
CCGATCAAACACTACAGAAC+TGG + chr1_4:53500556-53500575 None:intergenic 45.0%
TCAGGGACAGAACAAACTGA+AGG - chr1_4:53500590-53500609 Msa0169960:five_prime_UTR 45.0%
TGTACTGCAGGAAGACATCA+TGG - chr1_4:53500978-53500997 Msa0169960:intron 45.0%
!! TCGGGTTGGTCTGATGGTAT+TGG - chr1_4:53496671-53496690 Msa0169960:intron 50.0%
! TGGGAGTGTGCTCATACTCA+AGG - chr1_4:53496703-53496722 Msa0169960:intron 50.0%
GTGCTCATACTCAAGGTCTC+AGG - chr1_4:53496710-53496729 Msa0169960:intron 50.0%
CTTCAGTTCTCAGCAGCAGA+AGG + chr1_4:53496978-53496997 None:intergenic 50.0%
TTCAACATCGCGCAAAAGCG+AGG + chr1_4:53497234-53497253 None:intergenic 50.0%
GATGTTGATCTGCCAGGATC+TGG - chr1_4:53497810-53497829 Msa0169960:three_prime_UTR 50.0%
GTATCCGACACTGACACATG+TGG - chr1_4:53498159-53498178 Msa0169960:CDS 50.0%
! CACCTTCGATGGCCTTACAA+GGG - chr1_4:53499003-53499022 Msa0169960:intron 50.0%
CAAGCAATAGCCTCTGCAGA+CGG - chr1_4:53499133-53499152 Msa0169960:CDS 50.0%
AAGAAGAACACCGTCTGCAG+AGG + chr1_4:53499146-53499165 None:intergenic 50.0%
GACACCGACACACATCGGAT+CGG + chr1_4:53496362-53496381 None:intergenic 55.0%
GATGCATCTCACACTCGGGT+TGG - chr1_4:53496657-53496676 Msa0169960:intron 55.0%
!! TCACACTCGGGTTGGTCTGA+TGG - chr1_4:53496665-53496684 Msa0169960:intron 55.0%
CTTCGACAGGTACTCCTGCT+AGG - chr1_4:53497366-53497385 Msa0169960:intron 55.0%
! GTCACGAGGTGTCAGCTCAA+TGG - chr1_4:53497552-53497571 Msa0169960:three_prime_UTR 55.0%
AGCTTGGCCGTGTAACCTGA+AGG - chr1_4:53497579-53497598 Msa0169960:three_prime_UTR 55.0%
GCTTGGCCGTGTAACCTGAA+GGG - chr1_4:53497580-53497599 Msa0169960:three_prime_UTR 55.0%
ATCCTGATCGCCACCTTCGA+TGG - chr1_4:53498992-53499011 Msa0169960:intron 55.0%
CCTTGTAAGGCCATCGAAGG+TGG + chr1_4:53499005-53499024 None:intergenic 55.0%
! CCACCTTCGATGGCCTTACA+AGG - chr1_4:53499002-53499021 Msa0169960:intron 55.0%
GACCCTTGTAAGGCCATCGA+AGG + chr1_4:53499008-53499027 None:intergenic 55.0%
GCCTTACAAGGGTCAAGCTC+CGG - chr1_4:53499014-53499033 Msa0169960:intron 55.0%
TCCGGAGCTTGACCCTTGTA+AGG + chr1_4:53499018-53499037 None:intergenic 55.0%
ATCGGACGAGCTGTGTCTCA+AGG + chr1_4:53499973-53499992 None:intergenic 55.0%
GCGTCCGATCCGATGTGTGT+CGG - chr1_4:53496355-53496374 Msa0169960:intron 60.0%
TGGTTGAGATCTGCGAGCGC+AGG - chr1_4:53500003-53500022 Msa0169960:CDS 60.0%
GGCCATCGAAGGTGGCGATC+AGG + chr1_4:53498997-53499016 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 53495837 53501281 53495837 ID=Msa0169960;Name=Msa0169960
chr1_4 mRNA 53495837 53501281 53495837 ID=Msa0169960-mRNA-1;Parent=Msa0169960;Name=Msa0169960-mRNA-1;_AED=0.18;_eAED=0.18;_QI=1105|1|1|1|0.4|0.33|6|661|490
chr1_4 exon 53495837 53496130 53495837 ID=Msa0169960-mRNA-1:exon:15940;Parent=Msa0169960-mRNA-1
chr1_4 exon 53497536 53498759 53497536 ID=Msa0169960-mRNA-1:exon:15939;Parent=Msa0169960-mRNA-1
chr1_4 exon 53499110 53499292 53499110 ID=Msa0169960-mRNA-1:exon:15938;Parent=Msa0169960-mRNA-1
chr1_4 exon 53499666 53500349 53499666 ID=Msa0169960-mRNA-1:exon:15937;Parent=Msa0169960-mRNA-1
chr1_4 exon 53500372 53500945 53500372 ID=Msa0169960-mRNA-1:exon:15936;Parent=Msa0169960-mRNA-1
chr1_4 exon 53501002 53501281 53501002 ID=Msa0169960-mRNA-1:exon:15935;Parent=Msa0169960-mRNA-1
chr1_4 five_prime_UTR 53501002 53501281 53501002 ID=Msa0169960-mRNA-1:five_prime_utr;Parent=Msa0169960-mRNA-1
chr1_4 five_prime_UTR 53500372 53500945 53500372 ID=Msa0169960-mRNA-1:five_prime_utr;Parent=Msa0169960-mRNA-1
chr1_4 five_prime_UTR 53500099 53500349 53500099 ID=Msa0169960-mRNA-1:five_prime_utr;Parent=Msa0169960-mRNA-1
chr1_4 CDS 53499666 53500098 53499666 ID=Msa0169960-mRNA-1:cds;Parent=Msa0169960-mRNA-1
chr1_4 CDS 53499110 53499292 53499110 ID=Msa0169960-mRNA-1:cds;Parent=Msa0169960-mRNA-1
chr1_4 CDS 53497903 53498759 53497903 ID=Msa0169960-mRNA-1:cds;Parent=Msa0169960-mRNA-1
chr1_4 three_prime_UTR 53497536 53497902 53497536 ID=Msa0169960-mRNA-1:three_prime_utr;Parent=Msa0169960-mRNA-1
chr1_4 three_prime_UTR 53495837 53496130 53495837 ID=Msa0169960-mRNA-1:three_prime_utr;Parent=Msa0169960-mRNA-1
Gene Sequence

>Msa0169960

ATGAAACCAAAGACTGGTTTTGAAGTCATTCTGAATTATTCTAGTCAATGTCATAAGGAAAAATTGCAAACTGAGTCAAGTGCAGGTGCAAATGCAGCTTCTAGAGCAAACACAATCTTTTCTGCCAATGATCCTCTATCTGAAATAGTTTGGACTCCAGATAAAGGTTTCAGTCTTAAATGTGTCGATTCAAGTTTTACTAACAAAAATACCTCGCTTTTGCGCGATGTTGAACCTAGTAGTATGGTTCTTGCTCTGCTACAAAGTGTTACTTGTGCCACAGATAAACCTGTAGAAGACGTTTTAGTGCAACCTCTTGCTGTTATATGCGCAAAGAGTGACGTTTCTTCGACAGGTACTCCTGCTAGGAATTCAACAAGCGATTCAGTTGCCATCTTTCCAGAATATACACCATATCAAGAACATGATACAGGATCTGGTGATAATTTGGAGAAAATTAACTCTGCTGGAGGAACATCTGATTTGGCAAATGGTCAAAAGGAGAATTTAATGAACCACTGGGAGAAGAATATTTGTGCTCAAGCCTGCATTGAAATTGAAGCAGCTAAAATATCTGAGATAATGGAAGAGGAAAACAAATCTTCTACTATTTCAGGTCAGATCAACCAAAGTCCAGTTGGTAATTTACAAGTTCATCAAGATGGGTCTAAACTTAGCATGGAACAAAATCCTTCACCAAGGAAACATTACAAAGAAGGCTTGGATACTAGTGTTGACAACATGGTGGTTGAAATAGAAGATGACTCGTATACTAGAGTTGAACACATGATTGAAGATAAAGGTTCTAATCCTCTAGGAACATATTTGATATCACCCGGCATTAATCATTCGGAAAAAATGGATCTAACTTCACAGAAAGATTTACAAACTTTCAGCTGTAAAGCAGCTACTTCTGCAGCAACAAGCAGAATTCTTGTTTCAAAATCCAACGATAATAAAAACAAATCCAAGGTCAATGAGATGATGCTACCATACAATAAGAATGAAAGTCATCTAAGTTTTGAAAACTATCATAATCCTGGATTGTTTTTGGCAAGTAGGAAGCGATCGAAACAAGAAGTGATAATTGCGAGTAAAAGAGTCAAAATGCAAATTCAAGAAACTTCATCGTATTCTAAATCCAATGTTAATCATCATAGCTCATTCATGAACTTGGTTTCTAACATGACTAGAGGATACTCACAATCTAGTCAAGATGAGGAGAAGTCTTTGGCTCTTGCTCACGAAAATCCTGATCGCCACCTTCGATGGCCTTACAAGGGTCAAGCTCCGGAGCTTAAAAATTCCTTCAATTCCAATTTTCAGTCCACATATTGTCAGTGTTTTGAGAATTTCGGAACAAGAATGTCTCATCAAGTAGGAGAGTCTTCAAGCAATAGCCTCTGCAGACGGTGTTCTTCTTTACATCCTCAGGTTAGGCCTATAAATTTTCTCAATAGCCATGAACACTGA

Protein sequence

>Msa0169960

MKPKTGFEVILNYSSQCHKEKLQTESSAGANAASRANTIFSANDPLSEIVWTPDKGFSLKCVDSSFTNKNTSLLRDVEPSSMVLALLQSVTCATDKPVEDVLVQPLAVICAKSDVSSTGTPARNSTSDSVAIFPEYTPYQEHDTGSGDNLEKINSAGGTSDLANGQKENLMNHWEKNICAQACIEIEAAKISEIMEEENKSSTISGQINQSPVGNLQVHQDGSKLSMEQNPSPRKHYKEGLDTSVDNMVVEIEDDSYTRVEHMIEDKGSNPLGTYLISPGINHSEKMDLTSQKDLQTFSCKAATSAATSRILVSKSNDNKNKSKVNEMMLPYNKNESHLSFENYHNPGLFLASRKRSKQEVIIASKRVKMQIQETSSYSKSNVNHHSSFMNLVSNMTRGYSQSSQDEEKSLALAHENPDRHLRWPYKGQAPELKNSFNSNFQSTYCQCFENFGTRMSHQVGESSSNSLCRRCSSLHPQVRPINFLNSHEH*