Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546870 | KEH28840.1 | 81.646 | 158 | 19 | 2 | 1 | 157 | 1 | 149 | 8.38e-81 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546870 | sp|P81748|MIFH_TRITR | 36.792 | 106 | 66 | 1 | 1 | 106 | 1 | 105 | 1.16e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546870 | A0A072USK6 | 81.646 | 158 | 19 | 2 | 1 | 157 | 1 | 149 | 4.00e-81 | 246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120530 | Msa0546870 | 0.807790 | 4.254424e-50 | -8.615850e-47 |
| Msa0287780 | Msa0546870 | -0.814409 | 1.563581e-51 | -8.615850e-47 |
| Msa0546870 | Msa0711830 | -0.807438 | 5.054634e-50 | -8.615850e-47 |
| Msa0546870 | Msa1043130 | 0.814804 | 1.278137e-51 | -8.615850e-47 |
| Msa0546870 | Msa1257650 | 0.811898 | 5.561615e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546870 | MtrunA17_Chr4g0005161 | 97.170 | 106 | 3 | 0 | 1 | 106 | 1 | 106 | 1.75e-69 | 205 |
| Msa0546870 | MtrunA17_Chr7g0238011 | 64.762 | 105 | 37 | 0 | 1 | 105 | 1 | 105 | 2.20e-45 | 144 |
| Msa0546870 | MtrunA17_Chr7g0243451 | 55.856 | 111 | 49 | 0 | 1 | 111 | 1 | 111 | 4.78e-44 | 141 |
| Msa0546870 | MtrunA17_Chr4g0071771 | 63.208 | 106 | 39 | 0 | 1 | 106 | 1 | 106 | 1.11e-43 | 140 |
| Msa0546870 | MtrunA17_Chr4g0005151 | 59.223 | 103 | 42 | 0 | 1 | 103 | 1 | 103 | 6.42e-42 | 135 |
| Msa0546870 | MtrunA17_Chr4g0071761 | 55.660 | 106 | 47 | 0 | 1 | 106 | 1 | 106 | 4.63e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546870 | AT5G01650.2 | 86.207 | 116 | 14 | 1 | 1 | 116 | 1 | 114 | 5.36e-69 | 204 |
| Msa0546870 | AT5G01650.3 | 86.207 | 116 | 14 | 1 | 1 | 116 | 1 | 114 | 5.36e-69 | 204 |
| Msa0546870 | AT5G01650.4 | 88.679 | 106 | 12 | 0 | 1 | 106 | 1 | 106 | 3.65e-65 | 195 |
| Msa0546870 | AT5G01650.1 | 87.736 | 106 | 13 | 0 | 1 | 106 | 1 | 106 | 5.23e-64 | 192 |
| Msa0546870 | AT5G57170.2 | 57.759 | 116 | 47 | 1 | 1 | 114 | 1 | 116 | 4.59e-41 | 134 |
| Msa0546870 | AT5G57170.1 | 61.165 | 103 | 40 | 0 | 1 | 103 | 1 | 103 | 2.37e-40 | 132 |
| Msa0546870 | AT3G51660.1 | 48.039 | 102 | 53 | 0 | 1 | 102 | 1 | 102 | 5.05e-32 | 110 |
Find 41 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGAAGAATCGAGTTT+TGG | 0.237033 | 4_1:+39358792 | None:intergenic |
| CTCAGTCCCACCAAAAGATA+TGG | 0.281811 | 4_1:+39358924 | None:intergenic |
| GAGAGAGAGACGTACGGATT+CGG | 0.328765 | 4_1:+39360794 | None:intergenic |
| ACTGAGCAGCCAGCAGCTTA+TGG | 0.329165 | 4_1:-39358907 | Msa0546870:CDS |
| AGAGAGAGACGTACGGATTC+GGG | 0.335709 | 4_1:+39360795 | None:intergenic |
| ATTTCATGCCAGTATGATTA+TGG | 0.340702 | 4_1:-39358404 | Msa0546870:CDS |
| CTAAGTTTCTTGTTCACATC+AGG | 0.346916 | 4_1:+39358856 | None:intergenic |
| GGATCAGTACCCATATCTTT+TGG | 0.355534 | 4_1:-39358934 | Msa0546870:CDS |
| GCCAGCAGCTTATGGAGAAT+TGG | 0.403975 | 4_1:-39358899 | Msa0546870:CDS |
| GTTGGATGGAGTCTTCGTTT+TGG | 0.413727 | 4_1:-39358370 | Msa0546870:CDS |
| CAAAGGCACCATAATCATAC+TGG | 0.464487 | 4_1:+39358396 | None:intergenic |
| GGTTCCAACTTTGGATGGAA+TGG | 0.483855 | 4_1:-39358440 | Msa0546870:CDS |
| TGCAGGGTTCCAACTTTGGA+TGG | 0.486347 | 4_1:-39358445 | Msa0546870:intron |
| AGAAACTTATACACTTGCCT+TGG | 0.489136 | 4_1:+39358759 | None:intergenic |
| CGACGTTGGTGGAGAGGTTG+AGG | 0.495043 | 4_1:+39360889 | None:intergenic |
| ACCAATTCTCCATAAGCTGC+TGG | 0.496169 | 4_1:+39358898 | None:intergenic |
| AGCGACGGTGGAGGTAGCTT+CGG | 0.506642 | 4_1:+39360833 | None:intergenic |
| AGTTCCATTCCATCCAAAGT+TGG | 0.517612 | 4_1:+39358436 | None:intergenic |
| TGGTGCCTTTGAACGTTGGA+TGG | 0.521494 | 4_1:-39358384 | Msa0546870:CDS |
| TCAGTCCCACCAAAAGATAT+GGG | 0.527678 | 4_1:+39358925 | None:intergenic |
| GGAGGTAGCTTCGGAGAGGA+TGG | 0.541278 | 4_1:+39360842 | None:intergenic |
| TCCACCGTCGCTACTCTCAT+CGG | 0.551038 | 4_1:-39360822 | Msa0546870:CDS |
| CGAGGTCGACGTTGGTGGAG+AGG | 0.553556 | 4_1:+39360883 | None:intergenic |
| ACCTTCGAGGTCGACGTTGG+TGG | 0.568576 | 4_1:+39360878 | None:intergenic |
| AGACTCCATCCAACGTTCAA+AGG | 0.570155 | 4_1:+39358379 | None:intergenic |
| AAGAGGTGTCGACACCTTCG+AGG | 0.580661 | 4_1:+39360865 | None:intergenic |
| TAAGTTTCTTGTTCACATCA+GGG | 0.588217 | 4_1:+39358857 | None:intergenic |
| ATTATGGTGCCTTTGAACGT+TGG | 0.591485 | 4_1:-39358388 | Msa0546870:CDS |
| AGCTTCGGAGAGGATGGAAG+AGG | 0.595909 | 4_1:+39360848 | None:intergenic |
| TATGGAGAATTGGTGTCCAT+CGG | 0.607055 | 4_1:-39358889 | Msa0546870:CDS |
| GGAGAATTGGTGTCCATCGG+TGG | 0.618543 | 4_1:-39358886 | Msa0546870:CDS |
| CTTGAAATTCTATGACACCA+AGG | 0.619196 | 4_1:-39358776 | Msa0546870:CDS |
| TCCACCAACGTCGACCTCGA+AGG | 0.619447 | 4_1:-39360879 | Msa0546870:CDS |
| ATCAGGGTTAAGACCACCGA+TGG | 0.624244 | 4_1:+39358873 | None:intergenic |
| GATGAGAGTAGCGACGGTGG+AGG | 0.628141 | 4_1:+39360824 | None:intergenic |
| ACCGATGAGAGTAGCGACGG+TGG | 0.643638 | 4_1:+39360821 | None:intergenic |
| TTGGTGGAGAGGTTGAGGCA+CGG | 0.649461 | 4_1:+39360894 | None:intergenic |
| GACACCTTCGAGGTCGACGT+TGG | 0.649782 | 4_1:+39360875 | None:intergenic |
| TATGTGATGATTGTGCTCAA+AGG | 0.665190 | 4_1:-39358955 | Msa0546870:CDS |
| TTTACCGATGAGAGTAGCGA+CGG | 0.716111 | 4_1:+39360818 | None:intergenic |
| CGGTGGAGGTAGCTTCGGAG+AGG | 0.716958 | 4_1:+39360838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTTTCTTAAATTATTA+TGG | + | chr4_1:39358897-39358916 | None:intergenic | 10.0% |
| !! | TTTAACCTAATTTATTTGAA+TGG | - | chr4_1:39358552-39358571 | Msa0546870:intron | 15.0% |
| !! | ACTAATTACATATCTTAAAA+GGG | + | chr4_1:39360661-39360680 | None:intergenic | 15.0% |
| !! | TACTAATTACATATCTTAAA+AGG | + | chr4_1:39360662-39360681 | None:intergenic | 15.0% |
| !!! | TATGATTTGTGAATATTGAA+GGG | - | chr4_1:39358518-39358537 | Msa0546870:intron | 20.0% |
| !! | TAATTTATTTGAATGGTTTG+CGG | - | chr4_1:39358559-39358578 | Msa0546870:intron | 20.0% |
| !!! | TGAAATGTATTTAAGATTGA+AGG | - | chr4_1:39359278-39359297 | Msa0546870:intron | 20.0% |
| !!! | GAAATGTATTTAAGATTGAA+GGG | - | chr4_1:39359279-39359298 | Msa0546870:intron | 20.0% |
| !! | AACCTTTGAATTAATCAAAA+GGG | + | chr4_1:39359338-39359357 | None:intergenic | 20.0% |
| !! | AAACCTTTGAATTAATCAAA+AGG | + | chr4_1:39359339-39359358 | None:intergenic | 20.0% |
| !!! | GTTATTTTTTTTAGTGTTTG+TGG | - | chr4_1:39360049-39360068 | Msa0546870:intron | 20.0% |
| !! | TTTAGATTTGATGTTATACA+TGG | - | chr4_1:39360106-39360125 | Msa0546870:intron | 20.0% |
| !! | GTCAAAACTATAACATATTA+CGG | + | chr4_1:39360204-39360223 | None:intergenic | 20.0% |
| !!! | GTTTTAAATCAATGATTTTC+TGG | - | chr4_1:39360235-39360254 | Msa0546870:intron | 20.0% |
| !! | CTAATTACATATCTTAAAAG+GGG | + | chr4_1:39360660-39360679 | None:intergenic | 20.0% |
| !! | CTATGATTTGTGAATATTGA+AGG | - | chr4_1:39358517-39358536 | Msa0546870:intron | 25.0% |
| !! | ATGATTTGTGAATATTGAAG+GGG | - | chr4_1:39358519-39358538 | Msa0546870:intron | 25.0% |
| ! | GCAAACCATTCAAATAAATT+AGG | + | chr4_1:39358560-39358579 | None:intergenic | 25.0% |
| ! | TAAATTAGGTTCTTAAGTGT+AGG | + | chr4_1:39359073-39359092 | None:intergenic | 25.0% |
| ! | GAACCTAATTTAAGTCTTTA+AGG | - | chr4_1:39359081-39359100 | Msa0546870:intron | 25.0% |
| ! | ACACCTTAAAGACTTAAATT+AGG | + | chr4_1:39359087-39359106 | None:intergenic | 25.0% |
| !!! | ATTTAAGTCTTTAAGGTGTA+CGG | - | chr4_1:39359088-39359107 | Msa0546870:intron | 25.0% |
| ! | TAAGCAAGATAAAAACGAAA+GGG | + | chr4_1:39359148-39359167 | None:intergenic | 25.0% |
| ! | ATAAGCAAGATAAAAACGAA+AGG | + | chr4_1:39359149-39359168 | None:intergenic | 25.0% |
| !!! | TACCCTTTTGATTAATTCAA+AGG | - | chr4_1:39359333-39359352 | Msa0546870:intron | 25.0% |
| !!! | AATTCAAAGGTTTTAAGTTG+TGG | - | chr4_1:39359346-39359365 | Msa0546870:intron | 25.0% |
| !!! | ATTCAAAGGTTTTAAGTTGT+GGG | - | chr4_1:39359347-39359366 | Msa0546870:intron | 25.0% |
| ! | AACTTAGCATCTAATAATCA+AGG | + | chr4_1:39359502-39359521 | None:intergenic | 25.0% |
| ! | TTGAAATAGTTAGATACACA+GGG | + | chr4_1:39359704-39359723 | None:intergenic | 25.0% |
| !! | TCTTTCTTGAGTGAATTTTA+AGG | - | chr4_1:39360079-39360098 | Msa0546870:intron | 25.0% |
| !! | TCATTCGTTTAATTGCATTT+TGG | - | chr4_1:39360135-39360154 | Msa0546870:intron | 25.0% |
| !!! | GTAATTGCAGTTATTTTTCG+AGG | + | chr4_1:39358486-39358505 | None:intergenic | 30.0% |
| !! | TGTTCATCAAAATGGATTGT+TGG | - | chr4_1:39358616-39358635 | Msa0546870:intron | 30.0% |
| !! | TCAAAATGGATTGTTGGAAA+TGG | - | chr4_1:39358622-39358641 | Msa0546870:intron | 30.0% |
| ATTCTATGAAACACCAACAT+CGG | - | chr4_1:39358683-39358702 | Msa0546870:intron | 30.0% | |
| !! | TTTGATTAGAAGTGTCAAGA+GGG | - | chr4_1:39358986-39359005 | Msa0546870:intron | 30.0% |
| TCAATGAGTTTGACAGAAAT+AGG | - | chr4_1:39359029-39359048 | Msa0546870:intron | 30.0% | |
| CAATGAGTTTGACAGAAATA+GGG | - | chr4_1:39359030-39359049 | Msa0546870:intron | 30.0% | |
| ATATACCCTTTCTAACAATG+GGG | + | chr4_1:39359118-39359137 | None:intergenic | 30.0% | |
| GATATACCCTTTCTAACAAT+GGG | + | chr4_1:39359119-39359138 | None:intergenic | 30.0% | |
| TGATATACCCTTTCTAACAA+TGG | + | chr4_1:39359120-39359139 | None:intergenic | 30.0% | |
| AAGCAAGATAAAAACGAAAG+GGG | + | chr4_1:39359147-39359166 | None:intergenic | 30.0% | |
| ! | ATGTATTTAAGATTGAAGGG+AGG | - | chr4_1:39359282-39359301 | Msa0546870:intron | 30.0% |
| ! | TGTATTTAAGATTGAAGGGA+GGG | - | chr4_1:39359283-39359302 | Msa0546870:intron | 30.0% |
| !!! | TTCAAAGGTTTTAAGTTGTG+GGG | - | chr4_1:39359348-39359367 | Msa0546870:intron | 30.0% |
| ! | ATGCATTGTCTACAGTTTTT+CGG | + | chr4_1:39359402-39359421 | None:intergenic | 30.0% |
| !! | TGTGTCTGCAATTTTTGTTT+TGG | - | chr4_1:39359454-39359473 | Msa0546870:intron | 30.0% |
| ATACTGAAAGAGTAACTCAA+GGG | + | chr4_1:39359621-39359640 | None:intergenic | 30.0% | |
| AATACTGAAAGAGTAACTCA+AGG | + | chr4_1:39359622-39359641 | None:intergenic | 30.0% | |
| GTCTGCAAATACAATGTTTA+AGG | - | chr4_1:39359658-39359677 | Msa0546870:intron | 30.0% | |
| CTTGAAATAGTTAGATACAC+AGG | + | chr4_1:39359705-39359724 | None:intergenic | 30.0% | |
| TGTTCAAACAGTTAGACATA+GGG | + | chr4_1:39359744-39359763 | None:intergenic | 30.0% | |
| TTGTTCAAACAGTTAGACAT+AGG | + | chr4_1:39359745-39359764 | None:intergenic | 30.0% | |
| GTCTAACATGCTAATAAAGA+TGG | - | chr4_1:39359895-39359914 | Msa0546870:intron | 30.0% | |
| !!! | TATTCGTTATTTTTATCCCG+CGG | + | chr4_1:39359923-39359942 | None:intergenic | 30.0% |
| !! | GTTTAATTGCATTTTGGTGT+TGG | - | chr4_1:39360141-39360160 | Msa0546870:intron | 30.0% |
| !! | AATGATTTTCTGGCCTTTAT+TGG | - | chr4_1:39360245-39360264 | Msa0546870:intron | 30.0% |
| TAAGTTTCTTGTTCACATCA+GGG | + | chr4_1:39360376-39360395 | None:intergenic | 30.0% | |
| ! | TTCAAGAAGAATCGAGTTTT+GGG | + | chr4_1:39360440-39360459 | None:intergenic | 30.0% |
| ! | TTTCAAGAAGAATCGAGTTT+TGG | + | chr4_1:39360441-39360460 | None:intergenic | 30.0% |
| TCTAAATTGTCCTGAAAAGA+AGG | - | chr4_1:39360491-39360510 | Msa0546870:intron | 30.0% | |
| CTAAATTGTCCTGAAAAGAA+GGG | - | chr4_1:39360492-39360511 | Msa0546870:intron | 30.0% | |
| !! | TGCATTCTTCGTTTTTGTTT+AGG | - | chr4_1:39360540-39360559 | Msa0546870:intron | 30.0% |
| ATTTCATGCCAGTATGATTA+TGG | - | chr4_1:39360826-39360845 | Msa0546870:CDS | 30.0% | |
| GGAAACAAATCAGAGAGAAA+GGG | + | chr4_1:39358461-39358480 | None:intergenic | 35.0% | |
| TGGAAACAAATCAGAGAGAA+AGG | + | chr4_1:39358462-39358481 | None:intergenic | 35.0% | |
| !!! | TTGCAGTTATTTTTCGAGGT+TGG | + | chr4_1:39358482-39358501 | None:intergenic | 35.0% |
| GTCTGTTGTGTTCATCAAAA+TGG | - | chr4_1:39358608-39358627 | Msa0546870:intron | 35.0% | |
| GAAATGGAATGTCACATAGT+TGG | - | chr4_1:39358638-39358657 | Msa0546870:intron | 35.0% | |
| ! | ACGGCTTCAAATAAAAGTGT+CGG | - | chr4_1:39358797-39358816 | Msa0546870:CDS | 35.0% |
| CTCAATGCAATAACATGTGT+TGG | - | chr4_1:39358921-39358940 | Msa0546870:CDS | 35.0% | |
| CTTCTAATCAAAGTCATGTC+TGG | + | chr4_1:39358978-39358997 | None:intergenic | 35.0% | |
| !! | CTTTGATTAGAAGTGTCAAG+AGG | - | chr4_1:39358985-39359004 | Msa0546870:intron | 35.0% |
| TAATCTGACGTTTATCGTTG+AGG | - | chr4_1:39359199-39359218 | Msa0546870:intron | 35.0% | |
| AATCTGACGTTTATCGTTGA+GGG | - | chr4_1:39359200-39359219 | Msa0546870:intron | 35.0% | |
| ! | ACACTAGGTACCCTTTTTAA+AGG | - | chr4_1:39359225-39359244 | Msa0546870:intron | 35.0% |
| ! | CACTAGGTACCCTTTTTAAA+GGG | - | chr4_1:39359226-39359245 | Msa0546870:intron | 35.0% |
| ! | TAGGGCATTCCCTTTAAAAA+GGG | + | chr4_1:39359238-39359257 | None:intergenic | 35.0% |
| ! | GTATTTAAGATTGAAGGGAG+GGG | - | chr4_1:39359284-39359303 | Msa0546870:intron | 35.0% |
| ! | GCTCATTGTTATTCTACAGA+GGG | + | chr4_1:39359561-39359580 | None:intergenic | 35.0% |
| GACATAGGGAAATGTAGATT+TGG | + | chr4_1:39359730-39359749 | None:intergenic | 35.0% | |
| TTAAAACACTCGACAAGTTG+AGG | - | chr4_1:39359871-39359890 | Msa0546870:intron | 35.0% | |
| TTACACCAACTCTCATTCTT+TGG | - | chr4_1:39359950-39359969 | Msa0546870:intron | 35.0% | |
| TACACCAACTCTCATTCTTT+GGG | - | chr4_1:39359951-39359970 | Msa0546870:intron | 35.0% | |
| CACATACTGCAAACCAATAA+AGG | + | chr4_1:39360261-39360280 | None:intergenic | 35.0% | |
| TATGTGATGATTGTGCTCAA+AGG | - | chr4_1:39360275-39360294 | Msa0546870:intron | 35.0% | |
| CTAAGTTTCTTGTTCACATC+AGG | + | chr4_1:39360377-39360396 | None:intergenic | 35.0% | |
| CTTGAAATTCTATGACACCA+AGG | - | chr4_1:39360454-39360473 | Msa0546870:intron | 35.0% | |
| AGAAACTTATACACTTGCCT+TGG | + | chr4_1:39360474-39360493 | None:intergenic | 35.0% | |
| TGCAATAAGAAAAGAGTCCA+GGG | + | chr4_1:39360524-39360543 | None:intergenic | 35.0% | |
| ATGCAATAAGAAAAGAGTCC+AGG | + | chr4_1:39360525-39360544 | None:intergenic | 35.0% | |
| ACAAAAGTAGACACTGGAAA+AGG | + | chr4_1:39360710-39360729 | None:intergenic | 35.0% | |
| !! | TTCTGCTTTGATTGTTTTGC+AGG | - | chr4_1:39360768-39360787 | Msa0546870:intron | 35.0% |
| !! | TCTGCTTTGATTGTTTTGCA+GGG | - | chr4_1:39360769-39360788 | Msa0546870:intron | 35.0% |
| TGTTTATGTCGTTCCGATGT+TGG | + | chr4_1:39358699-39358718 | None:intergenic | 40.0% | |
| GTCTAGTGTCTAACACATGT+CGG | + | chr4_1:39358777-39358796 | None:intergenic | 40.0% | |
| CATGTGTTAGACACTAGACA+CGG | - | chr4_1:39358778-39358797 | Msa0546870:CDS | 40.0% | |
| !! | AACATGTGTTGGTGTCATGT+CGG | - | chr4_1:39358932-39358951 | Msa0546870:CDS | 40.0% |
| GTGTACCCCATTGTTAGAAA+GGG | - | chr4_1:39359110-39359129 | Msa0546870:intron | 40.0% | |
| ATCTGACGTTTATCGTTGAG+GGG | - | chr4_1:39359201-39359220 | Msa0546870:intron | 40.0% | |
| ! | CTAGGGCATTCCCTTTAAAA+AGG | + | chr4_1:39359239-39359258 | None:intergenic | 40.0% |
| !! | TTTTAAAGGGAATGCCCTAG+AGG | - | chr4_1:39359239-39359258 | Msa0546870:intron | 40.0% |
| TGAATGATTCCATGCCTCTA+GGG | + | chr4_1:39359256-39359275 | None:intergenic | 40.0% | |
| AAATTGCAGACACACTGTCA+AGG | + | chr4_1:39359448-39359467 | None:intergenic | 40.0% | |
| TTATTCTACAGAGGGTAAGC+TGG | + | chr4_1:39359553-39359572 | None:intergenic | 40.0% | |
| ! | GGCTCATTGTTATTCTACAG+AGG | + | chr4_1:39359562-39359581 | None:intergenic | 40.0% |
| AATGAGCCGAACTCTTAACT+GGG | - | chr4_1:39359574-39359593 | Msa0546870:intron | 40.0% | |
| CCAAAACCCAGTTAAGAGTT+CGG | + | chr4_1:39359583-39359602 | None:intergenic | 40.0% | |
| TGCAGACAGACATGTCATAA+AGG | + | chr4_1:39359645-39359664 | None:intergenic | 40.0% | |
| !! | GACTTCTGAGATTTCCCATA+AGG | - | chr4_1:39359776-39359795 | Msa0546870:intron | 40.0% |
| !! | TACACAAAGCACTGCCTTAT+GGG | + | chr4_1:39359793-39359812 | None:intergenic | 40.0% |
| ATGCCTTGTCTAAACCAGAA+AGG | + | chr4_1:39359827-39359846 | None:intergenic | 40.0% | |
| TGCTAATAAAGATGGTACCG+CGG | - | chr4_1:39359903-39359922 | Msa0546870:intron | 40.0% | |
| ! | GGATCAGTACCCATATCTTT+TGG | - | chr4_1:39360296-39360315 | Msa0546870:intron | 40.0% |
| ! | TCAGTACCCATATCTTTTGG+TGG | - | chr4_1:39360299-39360318 | Msa0546870:intron | 40.0% |
| ! | CAGTACCCATATCTTTTGGT+GGG | - | chr4_1:39360300-39360319 | Msa0546870:intron | 40.0% |
| TCAGTCCCACCAAAAGATAT+GGG | + | chr4_1:39360308-39360327 | None:intergenic | 40.0% | |
| ! | TATGGAGAATTGGTGTCCAT+CGG | - | chr4_1:39360341-39360360 | Msa0546870:intron | 40.0% |
| !!! | AGTTTTGGGAACAGACAACT+TGG | + | chr4_1:39360426-39360445 | None:intergenic | 40.0% |
| AGTTCCATTCCATCCAAAGT+TGG | + | chr4_1:39360797-39360816 | None:intergenic | 40.0% | |
| !! | CAAAGGCACCATAATCATAC+TGG | + | chr4_1:39360837-39360856 | None:intergenic | 40.0% |
| ATTATGGTGCCTTTGAACGT+TGG | - | chr4_1:39360842-39360861 | Msa0546870:CDS | 40.0% | |
| TTTACCGATGAGAGTAGCGA+CGG | + | chr4_1:39358415-39358434 | None:intergenic | 45.0% | |
| !! | TAAAAGTGTCGGTGCTACAG+AGG | - | chr4_1:39358808-39358827 | Msa0546870:CDS | 45.0% |
| !! | AAAAGTGTCGGTGCTACAGA+GGG | - | chr4_1:39358809-39358828 | Msa0546870:CDS | 45.0% |
| AGAGGGCTTATTGCATGTCT+GGG | - | chr4_1:39358826-39358845 | Msa0546870:CDS | 45.0% | |
| TGGGTTGTCGATGAGTTTGA+CGG | - | chr4_1:39358845-39358864 | Msa0546870:CDS | 45.0% | |
| TATGGATGTCGATGTGTCAG+TGG | + | chr4_1:39358879-39358898 | None:intergenic | 45.0% | |
| GGTGTACCCCATTGTTAGAA+AGG | - | chr4_1:39359109-39359128 | Msa0546870:intron | 45.0% | |
| TTATCGTTGAGGGGAACACT+AGG | - | chr4_1:39359210-39359229 | Msa0546870:intron | 45.0% | |
| CTGAATGATTCCATGCCTCT+AGG | + | chr4_1:39359257-39359276 | None:intergenic | 45.0% | |
| CAACTCCAACTGCAACATCA+AGG | + | chr4_1:39359312-39359331 | None:intergenic | 45.0% | |
| CAATGAGCCGAACTCTTAAC+TGG | - | chr4_1:39359573-39359592 | Msa0546870:intron | 45.0% | |
| ! | CCGAACTCTTAACTGGGTTT+TGG | - | chr4_1:39359580-39359599 | Msa0546870:intron | 45.0% |
| !!! | TCTTAACTGGGTTTTGGACC+TGG | - | chr4_1:39359586-39359605 | Msa0546870:intron | 45.0% |
| ACTCAAGGGAAATCATGTCC+AGG | + | chr4_1:39359607-39359626 | None:intergenic | 45.0% | |
| !! | GTACACAAAGCACTGCCTTA+TGG | + | chr4_1:39359794-39359813 | None:intergenic | 45.0% |
| GTACTGTAGTTGCTCCTTTC+TGG | - | chr4_1:39359810-39359829 | Msa0546870:intron | 45.0% | |
| !! | GCTCCTTTCTGGTTTAGACA+AGG | - | chr4_1:39359821-39359840 | Msa0546870:intron | 45.0% |
| GCTAATAAAGATGGTACCGC+GGG | - | chr4_1:39359904-39359923 | Msa0546870:intron | 45.0% | |
| CAGACCCAAAGAATGAGAGT+TGG | + | chr4_1:39359958-39359977 | None:intergenic | 45.0% | |
| CTCAGTCCCACCAAAAGATA+TGG | + | chr4_1:39360309-39360328 | None:intergenic | 45.0% | |
| ACCAATTCTCCATAAGCTGC+TGG | + | chr4_1:39360335-39360354 | None:intergenic | 45.0% | |
| CTGTGCACAAAAGTAGACAC+TGG | + | chr4_1:39360716-39360735 | None:intergenic | 45.0% | |
| ! | GTTTTGCAGGGTTCCAACTT+TGG | - | chr4_1:39360781-39360800 | Msa0546870:intron | 45.0% |
| GGTTCCAACTTTGGATGGAA+TGG | - | chr4_1:39360790-39360809 | Msa0546870:intron | 45.0% | |
| AGACTCCATCCAACGTTCAA+AGG | + | chr4_1:39360854-39360873 | None:intergenic | 45.0% | |
| ! | GTTGGATGGAGTCTTCGTTT+TGG | - | chr4_1:39360860-39360879 | Msa0546870:CDS | 45.0% |
| !!! | ATTTGATTATTTAATTTATT+TGG | - | chr4_1:39359998-39360017 | Msa0546870:intron | 5.0% |
| AGAGAGAGACGTACGGATTC+GGG | + | chr4_1:39358438-39358457 | None:intergenic | 50.0% | |
| GAGAGAGAGACGTACGGATT+CGG | + | chr4_1:39358439-39358458 | None:intergenic | 50.0% | |
| GAAAGGGAGAGAGAGACGTA+CGG | + | chr4_1:39358445-39358464 | None:intergenic | 50.0% | |
| CAGAGGGCTTATTGCATGTC+TGG | - | chr4_1:39358825-39358844 | Msa0546870:CDS | 50.0% | |
| GCCAGCAGCTTATGGAGAAT+TGG | - | chr4_1:39360331-39360350 | Msa0546870:intron | 50.0% | |
| ATCAGGGTTAAGACCACCGA+TGG | + | chr4_1:39360360-39360379 | None:intergenic | 50.0% | |
| ! | GGGTAACGACCCTTCTTTTC+AGG | + | chr4_1:39360504-39360523 | None:intergenic | 50.0% |
| GAAAAGAAGGGTCGTTACCC+TGG | - | chr4_1:39360504-39360523 | Msa0546870:intron | 50.0% | |
| TGCAGGGTTCCAACTTTGGA+TGG | - | chr4_1:39360785-39360804 | Msa0546870:intron | 50.0% | |
| TGGTGCCTTTGAACGTTGGA+TGG | - | chr4_1:39360846-39360865 | Msa0546870:CDS | 50.0% | |
| TTGGTGGAGAGGTTGAGGCA+CGG | + | chr4_1:39358339-39358358 | None:intergenic | 55.0% | |
| !! | AAGAGGTGTCGACACCTTCG+AGG | + | chr4_1:39358368-39358387 | None:intergenic | 55.0% |
| AGCTTCGGAGAGGATGGAAG+AGG | + | chr4_1:39358385-39358404 | None:intergenic | 55.0% | |
| TCCACCGTCGCTACTCTCAT+CGG | - | chr4_1:39358408-39358427 | Msa0546870:CDS | 55.0% | |
| AAGGGAATGCCCTAGAGGCA+TGG | - | chr4_1:39359244-39359263 | Msa0546870:intron | 55.0% | |
| GGGAGCCTTGATGTTGCAGT+TGG | - | chr4_1:39359304-39359323 | Msa0546870:intron | 55.0% | |
| ACTGAGCAGCCAGCAGCTTA+TGG | - | chr4_1:39360323-39360342 | Msa0546870:intron | 55.0% | |
| ! | GGAGAATTGGTGTCCATCGG+TGG | - | chr4_1:39360344-39360363 | Msa0546870:intron | 55.0% |
| ! | CGACGTTGGTGGAGAGGTTG+AGG | + | chr4_1:39358344-39358363 | None:intergenic | 60.0% |
| TCCACCAACGTCGACCTCGA+AGG | - | chr4_1:39358351-39358370 | Msa0546870:CDS | 60.0% | |
| ACCTTCGAGGTCGACGTTGG+TGG | + | chr4_1:39358355-39358374 | None:intergenic | 60.0% | |
| GACACCTTCGAGGTCGACGT+TGG | + | chr4_1:39358358-39358377 | None:intergenic | 60.0% | |
| GGAGGTAGCTTCGGAGAGGA+TGG | + | chr4_1:39358391-39358410 | None:intergenic | 60.0% | |
| AGCGACGGTGGAGGTAGCTT+CGG | + | chr4_1:39358400-39358419 | None:intergenic | 60.0% | |
| GATGAGAGTAGCGACGGTGG+AGG | + | chr4_1:39358409-39358428 | None:intergenic | 60.0% | |
| ACCGATGAGAGTAGCGACGG+TGG | + | chr4_1:39358412-39358431 | None:intergenic | 60.0% | |
| ! | CGAGGTCGACGTTGGTGGAG+AGG | + | chr4_1:39358350-39358369 | None:intergenic | 65.0% |
| CGGTGGAGGTAGCTTCGGAG+AGG | + | chr4_1:39358395-39358414 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39358333 | 39360919 | 39358333 | ID=Msa0546870;Name=Msa0546870 |
| chr4_1 | mRNA | 39358333 | 39360919 | 39358333 | ID=Msa0546870-mRNA-1;Parent=Msa0546870;Name=Msa0546870-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0.33|0.75|4|0|157 |
| chr4_1 | exon | 39360809 | 39360919 | 39360809 | ID=Msa0546870-mRNA-1:exon:10009;Parent=Msa0546870-mRNA-1 |
| chr4_1 | exon | 39358771 | 39358977 | 39358771 | ID=Msa0546870-mRNA-1:exon:10008;Parent=Msa0546870-mRNA-1 |
| chr4_1 | exon | 39358665 | 39358690 | 39358665 | ID=Msa0546870-mRNA-1:exon:10007;Parent=Msa0546870-mRNA-1 |
| chr4_1 | exon | 39358333 | 39358462 | 39358333 | ID=Msa0546870-mRNA-1:exon:10006;Parent=Msa0546870-mRNA-1 |
| chr4_1 | CDS | 39360809 | 39360919 | 39360809 | ID=Msa0546870-mRNA-1:cds;Parent=Msa0546870-mRNA-1 |
| chr4_1 | CDS | 39358771 | 39358977 | 39358771 | ID=Msa0546870-mRNA-1:cds;Parent=Msa0546870-mRNA-1 |
| chr4_1 | CDS | 39358665 | 39358690 | 39358665 | ID=Msa0546870-mRNA-1:cds;Parent=Msa0546870-mRNA-1 |
| chr4_1 | CDS | 39358333 | 39358462 | 39358333 | ID=Msa0546870-mRNA-1:cds;Parent=Msa0546870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
