Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287780 | XP_003597717.2 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287780 | sp|Q8S3D1|BH068_ARATH | 41.895 | 401 | 152 | 15 | 1 | 329 | 15 | 406 | 3.78e-69 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287780 | G7IUP4 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0287780 | 0.827427 | 1.573974e-54 | -8.615850e-47 |
| Msa0001940 | Msa0287780 | 0.805069 | 1.594801e-49 | -8.615850e-47 |
| Msa0006110 | Msa0287780 | 0.817099 | 3.930365e-52 | -8.615850e-47 |
| Msa0017950 | Msa0287780 | 0.811759 | 5.960978e-51 | -8.615850e-47 |
| Msa0023330 | Msa0287780 | 0.830633 | 2.630762e-55 | -8.615850e-47 |
| Msa0028620 | Msa0287780 | 0.804871 | 1.754297e-49 | -8.615850e-47 |
| Msa0036140 | Msa0287780 | 0.811671 | 6.230745e-51 | -8.615850e-47 |
| Msa0044090 | Msa0287780 | 0.824099 | 9.695680e-54 | -8.615850e-47 |
| Msa0050820 | Msa0287780 | 0.804647 | 1.953994e-49 | -8.615850e-47 |
| Msa0054920 | Msa0287780 | 0.807319 | 5.357713e-50 | -8.615850e-47 |
| Msa0080090 | Msa0287780 | 0.818548 | 1.851231e-52 | -8.615850e-47 |
| Msa0081020 | Msa0287780 | 0.836145 | 1.111076e-56 | -8.615850e-47 |
| Msa0101500 | Msa0287780 | -0.815073 | 1.114484e-51 | -8.615850e-47 |
| Msa0103770 | Msa0287780 | 0.812483 | 4.144421e-51 | -8.615850e-47 |
| Msa0104670 | Msa0287780 | 0.819167 | 1.338531e-52 | -8.615850e-47 |
| Msa0108410 | Msa0287780 | 0.817641 | 2.968343e-52 | -8.615850e-47 |
| Msa0115560 | Msa0287780 | 0.813536 | 2.435505e-51 | -8.615850e-47 |
| Msa0144530 | Msa0287780 | 0.815584 | 8.578459e-52 | -8.615850e-47 |
| Msa0150860 | Msa0287780 | 0.811685 | 6.188052e-51 | -8.615850e-47 |
| Msa0173690 | Msa0287780 | 0.812944 | 3.285397e-51 | -8.615850e-47 |
| Msa0175730 | Msa0287780 | 0.812261 | 4.632999e-51 | -8.615850e-47 |
| Msa0189710 | Msa0287780 | 0.827924 | 1.195588e-54 | -8.615850e-47 |
| Msa0191020 | Msa0287780 | 0.819935 | 8.942147e-53 | -8.615850e-47 |
| Msa0219590 | Msa0287780 | 0.803406 | 3.539062e-49 | -8.615850e-47 |
| Msa0221470 | Msa0287780 | 0.808513 | 2.984384e-50 | -8.615850e-47 |
| Msa0224780 | Msa0287780 | 0.801102 | 1.054751e-48 | -8.615850e-47 |
| Msa0225100 | Msa0287780 | 0.831775 | 1.378615e-55 | -8.615850e-47 |
| Msa0225110 | Msa0287780 | 0.941900 | 1.855108e-101 | -8.615850e-47 |
| Msa0225220 | Msa0287780 | 0.809325 | 2.001279e-50 | -8.615850e-47 |
| Msa0232020 | Msa0287780 | 0.825928 | 3.587208e-54 | -8.615850e-47 |
| Msa0232090 | Msa0287780 | 0.828000 | 1.146562e-54 | -8.615850e-47 |
| Msa0233320 | Msa0287780 | 0.816047 | 6.764573e-52 | -8.615850e-47 |
| Msa0241140 | Msa0287780 | 0.812258 | 4.641612e-51 | -8.615850e-47 |
| Msa0244640 | Msa0287780 | 0.829687 | 4.478643e-55 | -8.615850e-47 |
| Msa0244940 | Msa0287780 | 0.801288 | 9.664999e-49 | -8.615850e-47 |
| Msa0260780 | Msa0287780 | 0.805317 | 1.415197e-49 | -8.615850e-47 |
| Msa0266180 | Msa0287780 | 0.809289 | 2.036676e-50 | -8.615850e-47 |
| Msa0266200 | Msa0287780 | 0.945730 | 1.765047e-104 | -8.615850e-47 |
| Msa0267370 | Msa0287780 | 0.817521 | 3.158527e-52 | -8.615850e-47 |
| Msa0287740 | Msa0287780 | 0.837712 | 4.422655e-57 | -8.615850e-47 |
| Msa0287780 | Msa0287870 | 0.832651 | 8.370910e-56 | -8.615850e-47 |
| Msa0287780 | Msa0310090 | 0.830325 | 3.130097e-55 | -8.615850e-47 |
| Msa0287780 | Msa0315690 | 0.812783 | 3.563376e-51 | -8.615850e-47 |
| Msa0287780 | Msa0321620 | 0.805352 | 1.391261e-49 | -8.615850e-47 |
| Msa0287780 | Msa0321650 | 0.803704 | 3.070016e-49 | -8.615850e-47 |
| Msa0287780 | Msa0330340 | 0.803197 | 3.910046e-49 | -8.615850e-47 |
| Msa0287780 | Msa0360210 | 0.808311 | 3.296947e-50 | -8.615850e-47 |
| Msa0287780 | Msa0363790 | 0.813574 | 2.389340e-51 | -8.615850e-47 |
| Msa0287780 | Msa0367870 | 0.810677 | 1.023527e-50 | -8.615850e-47 |
| Msa0287780 | Msa0403640 | 0.835780 | 1.375075e-56 | -8.615850e-47 |
| Msa0287780 | Msa0406770 | 0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa0287780 | Msa0422260 | 0.817432 | 3.308479e-52 | -8.615850e-47 |
| Msa0287780 | Msa0425170 | 0.840367 | 9.077262e-58 | -8.615850e-47 |
| Msa0287780 | Msa0455760 | 0.818584 | 1.816258e-52 | -8.615850e-47 |
| Msa0287780 | Msa0464100 | 0.813758 | 2.176728e-51 | -8.615850e-47 |
| Msa0287780 | Msa0464120 | 0.821194 | 4.597151e-53 | -8.615850e-47 |
| Msa0287780 | Msa0481530 | 0.815865 | 7.426595e-52 | -8.615850e-47 |
| Msa0287780 | Msa0484650 | 0.803195 | 3.913667e-49 | -8.615850e-47 |
| Msa0287780 | Msa0486690 | 0.813216 | 2.863386e-51 | -8.615850e-47 |
| Msa0287780 | Msa0501380 | 0.806437 | 8.230527e-50 | -8.615850e-47 |
| Msa0287780 | Msa0529890 | 0.831049 | 2.080551e-55 | -8.615850e-47 |
| Msa0287780 | Msa0531180 | 0.830026 | 3.701901e-55 | -8.615850e-47 |
| Msa0287780 | Msa0538190 | 0.810782 | 9.714402e-51 | -8.615850e-47 |
| Msa0287780 | Msa0546870 | -0.814409 | 1.563581e-51 | -8.615850e-47 |
| Msa0287780 | Msa0553240 | 0.804751 | 1.858554e-49 | -8.615850e-47 |
| Msa0287780 | Msa0557320 | 0.811649 | 6.297909e-51 | -8.615850e-47 |
| Msa0287780 | Msa0565660 | 0.806917 | 6.516783e-50 | -8.615850e-47 |
| Msa0287780 | Msa0568680 | 0.800342 | 1.507521e-48 | -8.615850e-47 |
| Msa0287780 | Msa0571130 | 0.821264 | 4.428201e-53 | -8.615850e-47 |
| Msa0287780 | Msa0574390 | 0.813090 | 3.051521e-51 | -8.615850e-47 |
| Msa0287780 | Msa0581470 | 0.810622 | 1.051980e-50 | -8.615850e-47 |
| Msa0287780 | Msa0583360 | -0.823689 | 1.210160e-53 | -8.615850e-47 |
| Msa0287780 | Msa0585560 | 0.831437 | 1.670389e-55 | -8.615850e-47 |
| Msa0287780 | Msa0594050 | 0.818263 | 2.147573e-52 | -8.615850e-47 |
| Msa0287780 | Msa0611540 | -0.803594 | 3.235816e-49 | -8.615850e-47 |
| Msa0287780 | Msa0613120 | 0.802667 | 5.031585e-49 | -8.615850e-47 |
| Msa0287780 | Msa0616070 | 0.838137 | 3.438832e-57 | -8.615850e-47 |
| Msa0287780 | Msa0625720 | 0.829768 | 4.278966e-55 | -8.615850e-47 |
| Msa0287780 | Msa0629450 | 0.802750 | 4.837119e-49 | -8.615850e-47 |
| Msa0287780 | Msa0633700 | 0.812612 | 3.884084e-51 | -8.615850e-47 |
| Msa0287780 | Msa0637600 | 0.828341 | 9.487575e-55 | -8.615850e-47 |
| Msa0287780 | Msa0641220 | 0.822613 | 2.156951e-53 | -8.615850e-47 |
| Msa0287780 | Msa0653470 | 0.801600 | 8.340137e-49 | -8.615850e-47 |
| Msa0287780 | Msa0663390 | 0.818650 | 1.755175e-52 | -8.615850e-47 |
| Msa0287780 | Msa0679020 | 0.816922 | 4.307243e-52 | -8.615850e-47 |
| Msa0287780 | Msa0681250 | 0.803360 | 3.618616e-49 | -8.615850e-47 |
| Msa0287780 | Msa0699280 | 0.807823 | 4.187274e-50 | -8.615850e-47 |
| Msa0287780 | Msa0717890 | 0.810904 | 9.140640e-51 | -8.615850e-47 |
| Msa0287780 | Msa0729270 | 0.803309 | 3.706608e-49 | -8.615850e-47 |
| Msa0287780 | Msa0733010 | 0.826723 | 2.320183e-54 | -8.615850e-47 |
| Msa0287780 | Msa0741220 | 0.828470 | 8.830654e-55 | -8.615850e-47 |
| Msa0287780 | Msa0797770 | 0.811147 | 8.096793e-51 | -8.615850e-47 |
| Msa0287780 | Msa0817460 | 0.829286 | 5.605261e-55 | -8.615850e-47 |
| Msa0287780 | Msa0832340 | 0.810520 | 1.106380e-50 | -8.615850e-47 |
| Msa0287780 | Msa0835230 | 0.818691 | 1.717468e-52 | -8.615850e-47 |
| Msa0287780 | Msa0855870 | 0.804380 | 2.221249e-49 | -8.615850e-47 |
| Msa0287780 | Msa0898750 | 0.819348 | 1.217399e-52 | -8.615850e-47 |
| Msa0287780 | Msa0909770 | 0.806338 | 8.633539e-50 | -8.615850e-47 |
| Msa0287780 | Msa0927310 | 0.817855 | 2.655839e-52 | -8.615850e-47 |
| Msa0287780 | Msa0928130 | 0.802346 | 5.861019e-49 | -8.615850e-47 |
| Msa0287780 | Msa0960880 | -0.811335 | 7.372308e-51 | -8.615850e-47 |
| Msa0287780 | Msa0964310 | 0.813059 | 3.099525e-51 | -8.615850e-47 |
| Msa0287780 | Msa0967870 | 0.822520 | 2.266600e-53 | -8.615850e-47 |
| Msa0287780 | Msa0986510 | 0.818710 | 1.700655e-52 | -8.615850e-47 |
| Msa0287780 | Msa0989360 | 0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa0287780 | Msa0999290 | 0.822949 | 1.801149e-53 | -8.615850e-47 |
| Msa0287780 | Msa1016320 | 0.802362 | 5.816830e-49 | -8.615850e-47 |
| Msa0287780 | Msa1035480 | 0.803235 | 3.840268e-49 | -8.615850e-47 |
| Msa0287780 | Msa1036610 | 0.823472 | 1.360250e-53 | -8.615850e-47 |
| Msa0287780 | Msa1043130 | -0.863161 | 3.032294e-64 | -8.615850e-47 |
| Msa0287780 | Msa1050340 | 0.811885 | 5.598003e-51 | -8.615850e-47 |
| Msa0287780 | Msa1106510 | 0.819397 | 1.186806e-52 | -8.615850e-47 |
| Msa0287780 | Msa1114780 | 0.800943 | 1.136943e-48 | -8.615850e-47 |
| Msa0287780 | Msa1122150 | 0.815915 | 7.236866e-52 | -8.615850e-47 |
| Msa0287780 | Msa1147740 | 0.805061 | 1.600815e-49 | -8.615850e-47 |
| Msa0287780 | Msa1155170 | -0.833240 | 5.973618e-56 | -8.615850e-47 |
| Msa0287780 | Msa1160560 | 0.806222 | 9.132729e-50 | -8.615850e-47 |
| Msa0287780 | Msa1162780 | 0.813846 | 2.081531e-51 | -8.615850e-47 |
| Msa0287780 | Msa1163090 | 0.827286 | 1.701703e-54 | -8.615850e-47 |
| Msa0287780 | Msa1182340 | 0.815495 | 8.980325e-52 | -8.615850e-47 |
| Msa0287780 | Msa1199570 | 0.802736 | 4.869145e-49 | -8.615850e-47 |
| Msa0287780 | Msa1225860 | -0.832230 | 1.064149e-55 | -8.615850e-47 |
| Msa0287780 | Msa1236440 | 0.805162 | 1.524956e-49 | -8.615850e-47 |
| Msa0287780 | Msa1284900 | 0.802907 | 4.490069e-49 | -8.615850e-47 |
| Msa0287780 | Msa1297230 | 0.809738 | 1.631265e-50 | -8.615850e-47 |
| Msa0287780 | Msa1297290 | 0.804581 | 2.016432e-49 | -8.615850e-47 |
| Msa0287780 | Msa1325410 | -0.826923 | 2.078196e-54 | -8.615850e-47 |
| Msa0287780 | Msa1328710 | 0.800751 | 1.244021e-48 | -8.615850e-47 |
| Msa0287780 | Msa1340200 | 0.816106 | 6.559843e-52 | -8.615850e-47 |
| Msa0287780 | Msa1342380 | 0.815303 | 9.907300e-52 | -8.615850e-47 |
| Msa0287780 | Msa1345810 | 0.822381 | 2.442047e-53 | -8.615850e-47 |
| Msa0287780 | Msa1352280 | -0.825032 | 5.845669e-54 | -8.615850e-47 |
| Msa0287780 | Msa1355450 | 0.801009 | 1.102350e-48 | -8.615850e-47 |
| Msa0287780 | Msa1363820 | -0.804420 | 2.178705e-49 | -8.615850e-47 |
| Msa0287780 | Msa1374470 | 0.808396 | 3.161172e-50 | -8.615850e-47 |
| Msa0287780 | Msa1384750 | 0.813298 | 2.747293e-51 | -8.615850e-47 |
| Msa0287780 | Msa1385000 | 0.801929 | 7.140042e-49 | -8.615850e-47 |
| Msa0287780 | Msa1389200 | 0.813521 | 2.453629e-51 | -8.615850e-47 |
| Msa0287780 | Msa1390670 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0287780 | Msa1392880 | 0.813987 | 1.937704e-51 | -8.615850e-47 |
| Msa0287780 | Msa1405030 | 0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0287780 | Msa1408110 | 0.812817 | 3.502803e-51 | -8.615850e-47 |
| Msa0287780 | Msa1425260 | 0.814279 | 1.670210e-51 | -8.615850e-47 |
| Msa0287780 | Msa1433810 | 0.816183 | 6.306501e-52 | -8.615850e-47 |
| Msa0287780 | Msa1440560 | 0.802080 | 6.648887e-49 | -8.615850e-47 |
| Msa0287780 | Msa1440720 | 0.813807 | 2.123171e-51 | -8.615850e-47 |
| Msa0287780 | Msa1450100 | 0.819679 | 1.023528e-52 | -8.615850e-47 |
| Msa0287780 | Msa1452710 | 0.823214 | 1.562630e-53 | -8.615850e-47 |
| Msa0287780 | Msa1458680 | 0.830427 | 2.955434e-55 | -8.615850e-47 |
| Msa0287780 | Msa1463900 | 0.816859 | 4.451003e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287780 | MtrunA17_Chr2g0331431 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 667 |
| Msa0287780 | MtrunA17_Chr6g0486111 | 47.399 | 346 | 128 | 11 | 1 | 329 | 14 | 322 | 4.70e-88 | 267 |
| Msa0287780 | MtrunA17_Chr8g0390301 | 47.578 | 351 | 132 | 12 | 1 | 329 | 15 | 335 | 4.29e-77 | 239 |
| Msa0287780 | MtrunA17_Chr2g0318971 | 47.368 | 152 | 49 | 3 | 175 | 326 | 313 | 433 | 2.33e-34 | 130 |
| Msa0287780 | MtrunA17_Chr2g0280631 | 45.625 | 160 | 55 | 3 | 167 | 326 | 283 | 410 | 4.48e-32 | 124 |
| Msa0287780 | MtrunA17_Chr1g0207771 | 45.695 | 151 | 60 | 3 | 175 | 324 | 141 | 270 | 5.97e-32 | 120 |
| Msa0287780 | MtrunA17_Chr8g0361501 | 46.452 | 155 | 52 | 3 | 175 | 329 | 320 | 443 | 3.25e-31 | 122 |
| Msa0287780 | MtrunA17_Chr3g0141841 | 45.390 | 141 | 47 | 4 | 188 | 326 | 339 | 451 | 8.19e-30 | 118 |
| Msa0287780 | MtrunA17_Chr4g0045561 | 44.444 | 135 | 35 | 2 | 189 | 323 | 56 | 150 | 1.03e-26 | 103 |
| Msa0287780 | MtrunA17_Chr1g0199091 | 42.208 | 154 | 55 | 4 | 175 | 325 | 405 | 527 | 4.05e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287780 | AT4G29100.1 | 41.895 | 401 | 152 | 15 | 1 | 329 | 15 | 406 | 3.84e-70 | 224 |
| Msa0287780 | AT2G20100.1 | 59.322 | 177 | 58 | 4 | 163 | 329 | 189 | 361 | 5.33e-60 | 196 |
| Msa0287780 | AT2G20100.3 | 47.085 | 223 | 58 | 5 | 163 | 329 | 189 | 407 | 9.43e-51 | 174 |
| Msa0287780 | AT4G29100.2 | 38.462 | 338 | 131 | 13 | 1 | 270 | 15 | 343 | 7.95e-43 | 151 |
| Msa0287780 | AT2G20100.4 | 64.035 | 114 | 31 | 3 | 163 | 270 | 189 | 298 | 1.96e-36 | 134 |
| Msa0287780 | AT2G20100.2 | 64.035 | 114 | 31 | 3 | 163 | 270 | 189 | 298 | 1.96e-36 | 134 |
| Msa0287780 | AT1G27660.1 | 47.904 | 167 | 46 | 6 | 173 | 328 | 316 | 452 | 1.21e-33 | 129 |
| Msa0287780 | AT3G19500.1 | 48.000 | 150 | 45 | 3 | 175 | 324 | 140 | 256 | 1.01e-32 | 122 |
| Msa0287780 | AT3G20640.4 | 40.323 | 186 | 68 | 4 | 155 | 329 | 238 | 391 | 1.58e-31 | 122 |
| Msa0287780 | AT3G20640.1 | 40.323 | 186 | 68 | 4 | 155 | 329 | 300 | 453 | 3.22e-31 | 122 |
| Msa0287780 | AT1G61660.7 | 44.079 | 152 | 56 | 2 | 175 | 326 | 266 | 388 | 4.88e-28 | 112 |
| Msa0287780 | AT1G61660.1 | 44.079 | 152 | 56 | 2 | 175 | 326 | 266 | 388 | 4.88e-28 | 112 |
| Msa0287780 | AT1G61660.3 | 44.079 | 152 | 56 | 2 | 175 | 326 | 263 | 385 | 5.08e-28 | 112 |
| Msa0287780 | AT2G31730.2 | 40.441 | 136 | 41 | 1 | 189 | 324 | 39 | 134 | 2.87e-26 | 102 |
| Msa0287780 | AT2G31730.1 | 40.441 | 136 | 41 | 1 | 189 | 324 | 39 | 134 | 2.87e-26 | 102 |
| Msa0287780 | AT1G05710.6 | 39.706 | 136 | 42 | 1 | 189 | 324 | 29 | 124 | 3.05e-25 | 99.4 |
| Msa0287780 | AT1G05710.11 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT1G05710.5 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT1G05710.1 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT1G05710.14 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT1G05710.3 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT1G05710.4 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT1G05710.12 | 39.706 | 136 | 42 | 1 | 189 | 324 | 37 | 132 | 3.31e-25 | 99.4 |
| Msa0287780 | AT4G05170.3 | 44.030 | 134 | 51 | 3 | 175 | 306 | 41 | 152 | 7.29e-25 | 99.4 |
| Msa0287780 | AT1G31050.1 | 41.358 | 162 | 64 | 5 | 166 | 325 | 296 | 428 | 2.06e-24 | 103 |
| Msa0287780 | AT1G31050.7 | 41.358 | 162 | 64 | 5 | 166 | 325 | 296 | 428 | 2.23e-24 | 103 |
| Msa0287780 | AT1G31050.6 | 41.358 | 162 | 64 | 5 | 166 | 325 | 300 | 432 | 2.30e-24 | 103 |
| Msa0287780 | AT4G05170.5 | 44.030 | 134 | 51 | 3 | 175 | 306 | 134 | 245 | 3.03e-24 | 100 |
| Msa0287780 | AT4G05170.2 | 44.030 | 134 | 51 | 3 | 175 | 306 | 159 | 270 | 3.83e-24 | 100 |
| Msa0287780 | AT4G05170.1 | 44.030 | 134 | 51 | 3 | 175 | 306 | 177 | 288 | 4.73e-24 | 100 |
| Msa0287780 | AT1G05710.9 | 42.647 | 136 | 60 | 4 | 189 | 324 | 29 | 146 | 3.72e-23 | 94.4 |
| Msa0287780 | AT1G05710.8 | 42.647 | 136 | 60 | 4 | 189 | 324 | 29 | 146 | 3.72e-23 | 94.4 |
| Msa0287780 | AT1G05710.13 | 42.647 | 136 | 60 | 4 | 189 | 324 | 37 | 154 | 4.75e-23 | 94.4 |
| Msa0287780 | AT1G05710.2 | 42.647 | 136 | 60 | 4 | 189 | 324 | 37 | 154 | 4.75e-23 | 94.4 |
| Msa0287780 | AT1G05710.10 | 42.647 | 136 | 60 | 4 | 189 | 324 | 37 | 154 | 4.75e-23 | 94.4 |
| Msa0287780 | AT1G05710.7 | 42.647 | 136 | 60 | 4 | 189 | 324 | 37 | 154 | 4.75e-23 | 94.4 |
| Msa0287780 | AT4G21340.1 | 47.445 | 137 | 44 | 5 | 175 | 309 | 176 | 286 | 1.01e-22 | 96.7 |
| Msa0287780 | AT4G05170.7 | 64.789 | 71 | 25 | 0 | 175 | 245 | 159 | 229 | 1.02e-21 | 92.4 |
| Msa0287780 | AT3G19500.2 | 65.152 | 66 | 23 | 0 | 175 | 240 | 140 | 205 | 7.59e-21 | 89.7 |
| Msa0287780 | AT3G20640.3 | 50.000 | 102 | 39 | 2 | 155 | 245 | 300 | 400 | 7.65e-21 | 92.8 |
| Msa0287780 | AT1G61660.6 | 64.789 | 71 | 25 | 0 | 175 | 245 | 266 | 336 | 1.37e-20 | 91.3 |
| Msa0287780 | AT1G61660.2 | 64.789 | 71 | 25 | 0 | 175 | 245 | 266 | 336 | 1.37e-20 | 91.3 |
| Msa0287780 | AT1G49830.1 | 40.945 | 127 | 41 | 3 | 199 | 325 | 134 | 226 | 3.60e-20 | 88.6 |
| Msa0287780 | AT1G49830.2 | 40.945 | 127 | 41 | 3 | 199 | 325 | 133 | 225 | 3.61e-20 | 88.6 |
| Msa0287780 | AT4G05170.6 | 70.690 | 58 | 17 | 0 | 175 | 232 | 159 | 216 | 1.54e-19 | 86.3 |
| Msa0287780 | AT4G05170.4 | 70.690 | 58 | 17 | 0 | 175 | 232 | 159 | 216 | 1.54e-19 | 86.3 |
| Msa0287780 | AT3G20640.2 | 51.685 | 89 | 31 | 3 | 155 | 232 | 300 | 387 | 4.01e-16 | 79.0 |
| Msa0287780 | AT1G61660.4 | 34.641 | 153 | 69 | 3 | 174 | 326 | 245 | 366 | 7.57e-14 | 72.0 |
| Msa0287780 | AT1G31050.5 | 52.857 | 70 | 32 | 1 | 166 | 234 | 300 | 369 | 2.20e-13 | 70.9 |
| Msa0287780 | AT1G31050.2 | 52.857 | 70 | 32 | 1 | 166 | 234 | 296 | 365 | 2.35e-13 | 70.5 |
Find 109 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCAAGAGTTCCATTTA+TGG | 0.161942 | 2_3:+30992396 | Msa0287780:CDS |
| TGCTTTATTATATCCATAAA+TGG | 0.195130 | 2_3:-30992409 | None:intergenic |
| TGATGATCAACCATAATTAA+TGG | 0.222346 | 2_3:-30994998 | None:intergenic |
| TATATGCATGCCATTAATTA+TGG | 0.252292 | 2_3:+30994988 | Msa0287780:three_prime_UTR |
| CAACATGTTGGAAGTGAAAA+TGG | 0.269929 | 2_3:+30994830 | Msa0287780:CDS |
| TGTGAGTAATTAACCTTTAG+AGG | 0.282892 | 2_3:-30992880 | None:intergenic |
| GTGAAAATGGAGCTGATTAC+TGG | 0.289834 | 2_3:+30994843 | Msa0287780:CDS |
| TGAGTTGATCTTATTAAGTT+TGG | 0.296518 | 2_3:+30995075 | Msa0287780:three_prime_UTR |
| TCTCAAGGTGAGAATTTCTA+TGG | 0.301565 | 2_3:+30992439 | Msa0287780:CDS |
| CCAAACAAGACTTTGGATAA+AGG | 0.302743 | 2_3:-30991704 | None:intergenic |
| CTTCAATTGATATGTAAGTT+TGG | 0.306683 | 2_3:+30995105 | Msa0287780:three_prime_UTR |
| CTTAAGTAGTGATAATATAT+TGG | 0.313482 | 2_3:+30992567 | Msa0287780:CDS |
| CATACCTGACCGGGGTCTTC+AGG | 0.315826 | 2_3:-30993936 | None:intergenic |
| AAGAATACCTGGTTTGGAAT+TGG | 0.331532 | 2_3:-30994277 | None:intergenic |
| CACCAGCTAGTTTCTCCATT+TGG | 0.331535 | 2_3:+30993195 | Msa0287780:CDS |
| ACAGAATGCAGAAGGTAATA+AGG | 0.336565 | 2_3:+30994757 | Msa0287780:intron |
| CCTTTATCCAAAGTCTTGTT+TGG | 0.359958 | 2_3:+30991704 | Msa0287780:five_prime_UTR |
| GATTACTGGGCACCAGCATT+TGG | 0.361562 | 2_3:+30994857 | Msa0287780:CDS |
| AAAGAAAAGAATACCTGGTT+TGG | 0.370691 | 2_3:-30994283 | None:intergenic |
| TGGTTCATCTTGGTCACATA+TGG | 0.375811 | 2_3:+30992510 | Msa0287780:CDS |
| TATGGTTGATCATCAATAAC+TGG | 0.381301 | 2_3:+30995006 | Msa0287780:three_prime_UTR |
| GGATGCATGCTCCACCAGTT+AGG | 0.382855 | 2_3:-30991915 | None:intergenic |
| AGCTAGTGATATGAGAGCTT+GGG | 0.388897 | 2_3:-30992546 | None:intergenic |
| TGATGGCTGGGAACCCTAAC+TGG | 0.390562 | 2_3:+30991901 | Msa0287780:CDS |
| GGCACTCAGCACCCCTTACT+TGG | 0.395598 | 2_3:+30993682 | Msa0287780:intron |
| CTGGATCACTTGGTTCATCT+TGG | 0.397211 | 2_3:+30992500 | Msa0287780:CDS |
| CTTGTTTGGTTGCACATACA+AGG | 0.409409 | 2_3:+30991718 | Msa0287780:five_prime_UTR |
| TTGAAGAAACGTAAAGTCTT+GGG | 0.413686 | 2_3:-30991641 | None:intergenic |
| GATGCTGCAGTGTCCAAGTA+AGG | 0.413970 | 2_3:-30993695 | None:intergenic |
| TTTACCTCAGATATTTGATC+TGG | 0.419363 | 2_3:-30992631 | None:intergenic |
| TGAGAGCTTGGGGAAGAAAC+TGG | 0.431844 | 2_3:-30992535 | None:intergenic |
| TAGAAGCCATTGGATACATC+AGG | 0.435008 | 2_3:+30993467 | Msa0287780:CDS |
| GCAAAGAACTTGAAGAGTAG+AGG | 0.454514 | 2_3:+30994779 | Msa0287780:CDS |
| CGTGCTAACTCTGGATCACT+TGG | 0.461704 | 2_3:+30992490 | Msa0287780:CDS |
| CCAATAAAGCATACCTGACC+GGG | 0.469066 | 2_3:-30993945 | None:intergenic |
| AAGCTAGTGATATGAGAGCT+TGG | 0.469144 | 2_3:-30992547 | None:intergenic |
| ATAAATGGAACTCTTGAAGA+TGG | 0.469340 | 2_3:-30992394 | None:intergenic |
| TAGTTTGTTACCTTTCCAAA+TGG | 0.469992 | 2_3:-30993210 | None:intergenic |
| ATATGAAGCAAGAAAATTTG+TGG | 0.470978 | 2_3:+30994898 | Msa0287780:three_prime_UTR |
| TAATACATTTAAACAAAAGA+AGG | 0.472229 | 2_3:-30995165 | None:intergenic |
| CTGAAGTACCTCCTCAATCA+TGG | 0.473133 | 2_3:+30992015 | Msa0287780:CDS |
| TCTGTATTATTAGAAGCCAT+TGG | 0.473376 | 2_3:+30993457 | Msa0287780:CDS |
| CTGGAGTTAATAAGAAGGCT+AGG | 0.474420 | 2_3:+30992833 | Msa0287780:CDS |
| AGAGGTGGTTGGCTTGAAGA+TGG | 0.480437 | 2_3:-30992862 | None:intergenic |
| ATCCCTCCTCAATATATGCT+TGG | 0.481586 | 2_3:+30991951 | Msa0287780:CDS |
| GTCATTCTGTGGTAATGAAA+AGG | 0.483333 | 2_3:+30994944 | Msa0287780:three_prime_UTR |
| TGTGCAACCAAACAAGACTT+TGG | 0.484086 | 2_3:-30991711 | None:intergenic |
| TCCAATAAAGCATACCTGAC+CGG | 0.484473 | 2_3:-30993946 | None:intergenic |
| TTCAAGCCAACCACCTCTAA+AGG | 0.487455 | 2_3:+30992867 | Msa0287780:CDS |
| CCAGCCATCATTTGCTACAA+TGG | 0.492326 | 2_3:-30991888 | None:intergenic |
| GATGCATGCTCCACCAGTTA+GGG | 0.504766 | 2_3:-30991914 | None:intergenic |
| CCATTGTAGCAAATGATGGC+TGG | 0.505228 | 2_3:+30991888 | Msa0287780:exon |
| GAGGAGTTTCGTGCTAACTC+TGG | 0.506033 | 2_3:+30992481 | Msa0287780:CDS |
| TGGGCACCAGCATTTGGAAG+TGG | 0.511663 | 2_3:+30994863 | Msa0287780:CDS |
| GGAGGGATATTCAAAGATGA+TGG | 0.512004 | 2_3:-30991936 | None:intergenic |
| GTTGAAGAAACGTAAAGTCT+TGG | 0.512034 | 2_3:-30991642 | None:intergenic |
| AGTCTCATGATATATGTGTA+AGG | 0.512334 | 2_3:-30991859 | None:intergenic |
| TAGTGTAATAGCTCAACTAC+TGG | 0.514825 | 2_3:+30992814 | Msa0287780:intron |
| CCAAGTCTCTCTTCTTCACC+AGG | 0.522523 | 2_3:-30992316 | None:intergenic |
| ATTTCCTGAAGACCCCGGTC+AGG | 0.529122 | 2_3:+30993932 | Msa0287780:CDS |
| TGATATATGTGTAAGGACTA+AGG | 0.530074 | 2_3:-30991852 | None:intergenic |
| TAAAACCCACTTCCAAATGC+TGG | 0.531421 | 2_3:-30994869 | None:intergenic |
| AATTAACCTTTAGAGGTGGT+TGG | 0.534058 | 2_3:-30992873 | None:intergenic |
| TTTCTGTCAAGGAATTGAAA+GGG | 0.538293 | 2_3:-30991986 | None:intergenic |
| GTTTCTACAGAGTCAAATTG+AGG | 0.544344 | 2_3:+30993489 | Msa0287780:CDS |
| GAGTTAGCACGAAACTCCTC+AGG | 0.546788 | 2_3:-30992478 | None:intergenic |
| TTCCAAATGGAGAAACTAGC+TGG | 0.547701 | 2_3:-30993197 | None:intergenic |
| CATTGTAGCAAATGATGGCT+GGG | 0.551321 | 2_3:+30991889 | Msa0287780:exon |
| GCTAGTTTCTCCATTTGGAA+AGG | 0.554411 | 2_3:+30993200 | Msa0287780:CDS |
| CCTGGTGAAGAAGAGAGACT+TGG | 0.557044 | 2_3:+30992316 | Msa0287780:CDS |
| GGGCACCAGCATTTGGAAGT+GGG | 0.558978 | 2_3:+30994864 | Msa0287780:CDS |
| TGAAAATGGAGCTGATTACT+GGG | 0.559536 | 2_3:+30994844 | Msa0287780:CDS |
| TATAATAAACAGAATGCAGA+AGG | 0.559856 | 2_3:+30994749 | Msa0287780:intron |
| AGTAGTTGACTCCATGATTG+AGG | 0.561864 | 2_3:-30992026 | None:intergenic |
| TGGAGTTAATAAGAAGGCTA+GGG | 0.563568 | 2_3:+30992834 | Msa0287780:CDS |
| GAAGAGTAGAGGGTTGTGCT+TGG | 0.563799 | 2_3:+30994790 | Msa0287780:CDS |
| CAAAGAACTTGAAGAGTAGA+GGG | 0.566692 | 2_3:+30994780 | Msa0287780:CDS |
| TGATCCATTGTAGCAAATGA+TGG | 0.567554 | 2_3:+30991884 | Msa0287780:exon |
| AATACATTTAAACAAAAGAA+GGG | 0.567562 | 2_3:-30995164 | None:intergenic |
| ACATGTTGTGTGCATGACAC+TGG | 0.568881 | 2_3:-30994815 | None:intergenic |
| AACTACTGGAGTTAATAAGA+AGG | 0.572553 | 2_3:+30992828 | Msa0287780:CDS |
| ATCTAGCTGTTGGATGACAC+TGG | 0.583620 | 2_3:+30994235 | Msa0287780:intron |
| GAATCTGAATCAGGTGAGGA+AGG | 0.588844 | 2_3:+30993143 | Msa0287780:intron |
| GAAGATCCAAGCATATATTG+AGG | 0.591487 | 2_3:-30991957 | None:intergenic |
| TAGAAACCTGATGTATCCAA+TGG | 0.592817 | 2_3:-30993473 | None:intergenic |
| ATGCTGCAGTGTCCAAGTAA+GGG | 0.597172 | 2_3:-30993694 | None:intergenic |
| GAGAATTTCTATGGTCAACA+AGG | 0.598589 | 2_3:+30992448 | Msa0287780:CDS |
| ATAAAGCATGAAGTTTCTCA+AGG | 0.600376 | 2_3:+30992424 | Msa0287780:CDS |
| CATCATGAGCAGTCATTCTG+TGG | 0.603338 | 2_3:+30994933 | Msa0287780:three_prime_UTR |
| GAGCGCTCCAATTCCAAACC+AGG | 0.604751 | 2_3:+30994270 | Msa0287780:CDS |
| GCTAGTGATATGAGAGCTTG+GGG | 0.616346 | 2_3:-30992545 | None:intergenic |
| GATCCAAGCATATATTGAGG+AGG | 0.624438 | 2_3:-30991954 | None:intergenic |
| ATCCAAGCATATATTGAGGA+GGG | 0.625532 | 2_3:-30991953 | None:intergenic |
| AATTTAATTAGATCAGAGAG+AGG | 0.626594 | 2_3:-30995041 | None:intergenic |
| CAGGTGAGGAAGGAGAAGCT+AGG | 0.634871 | 2_3:+30993153 | Msa0287780:intron |
| TCTGTATTTCCTGAAGACCC+CGG | 0.639899 | 2_3:+30993927 | Msa0287780:CDS |
| GAGTAATTAACCTTTAGAGG+TGG | 0.639994 | 2_3:-30992877 | None:intergenic |
| TGAAGAAACGTAAAGTCTTG+GGG | 0.656303 | 2_3:-30991640 | None:intergenic |
| ACAACCAGATCAAATATCTG+AGG | 0.658325 | 2_3:+30992627 | Msa0287780:CDS |
| GTGTCATGCACACAACATGT+TGG | 0.662430 | 2_3:+30994818 | Msa0287780:CDS |
| TGCTGCAGTGTCCAAGTAAG+GGG | 0.663325 | 2_3:-30993693 | None:intergenic |
| ACAAGGAAATATCATCACAA+AGG | 0.676273 | 2_3:+30991735 | Msa0287780:five_prime_UTR |
| AGTTGACTCCATGATTGAGG+AGG | 0.689840 | 2_3:-30992023 | None:intergenic |
| TCAACAAGGGCATCATCCTG+AGG | 0.692914 | 2_3:+30992462 | Msa0287780:CDS |
| AGAATTTCTATGGTCAACAA+GGG | 0.696477 | 2_3:+30992449 | Msa0287780:CDS |
| ATTGGATTTCACTTACAACA+AGG | 0.702031 | 2_3:+30992585 | Msa0287780:CDS |
| TATATGTGTAAGGACTAAGG+AGG | 0.708378 | 2_3:-30991849 | None:intergenic |
| TGGCTGGGAACCCTAACTGG+TGG | 0.716766 | 2_3:+30991904 | Msa0287780:CDS |
| CAATAAAGCATACCTGACCG+GGG | 0.742945 | 2_3:-30993944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATAAAATTAAAAA+AGG | - | chr2_3:30993875-30993894 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr2_3:30994371-30994390 | None:intergenic | 0.0% |
| !!! | TTCTTTTTTTTTTTTTTTGA+AGG | + | chr2_3:30992672-30992691 | Msa0287780:intron | 10.0% |
| !! | AATATAGTATTATTATTGAA+GGG | + | chr2_3:30993835-30993854 | Msa0287780:intron | 10.0% |
| !! | AAAATAAAATTAAAAAAGGA+AGG | - | chr2_3:30993871-30993890 | None:intergenic | 10.0% |
| !!! | TTTTATAAAAAACTATTAAC+AGG | + | chr2_3:30993887-30993906 | Msa0287780:intron | 10.0% |
| !! | ATATATATATATATATAGGA+GGG | - | chr2_3:30994367-30994386 | None:intergenic | 10.0% |
| !! | TATATATATATATATATAGG+AGG | - | chr2_3:30994368-30994387 | None:intergenic | 10.0% |
| !! | TACAAAAATTTCATTTCTTA+AGG | + | chr2_3:30991791-30991810 | Msa0287780:five_prime_UTR | 15.0% |
| !!! | TTTTCTTCATTATAATTACA+TGG | + | chr2_3:30992249-30992268 | Msa0287780:intron | 15.0% |
| !!! | TTTTTTTTTGAAGGATATAT+AGG | + | chr2_3:30992681-30992700 | Msa0287780:intron | 15.0% |
| !! | TAATTTCTATCTTAATTACT+TGG | + | chr2_3:30992934-30992953 | Msa0287780:intron | 15.0% |
| !! | GAATATAGTATTATTATTGA+AGG | + | chr2_3:30993834-30993853 | Msa0287780:intron | 15.0% |
| !! | AATGAATTCTAATTAATTGA+TGG | - | chr2_3:30993973-30993992 | None:intergenic | 15.0% |
| !! | AATTCATTAGAATCAAATTA+AGG | + | chr2_3:30993985-30994004 | Msa0287780:intron | 15.0% |
| !! | ATTCATTAGAATCAAATTAA+GGG | + | chr2_3:30993986-30994005 | Msa0287780:intron | 15.0% |
| !! | TATATATATATATATAGGAG+GGG | - | chr2_3:30994366-30994385 | None:intergenic | 15.0% |
| !!! | AATGTCACTTTAATAAATAA+TGG | + | chr2_3:30994724-30994743 | Msa0287780:intron | 15.0% |
| !! | AATACATTTAAACAAAAGAA+GGG | - | chr2_3:30995167-30995186 | None:intergenic | 15.0% |
| !! | TAATACATTTAAACAAAAGA+AGG | - | chr2_3:30995168-30995187 | None:intergenic | 15.0% |
| !! | GAAGAAAAAAAACATGAATA+AGG | - | chr2_3:30992237-30992256 | None:intergenic | 20.0% |
| !!! | TGCTTTATTATATCCATAAA+TGG | - | chr2_3:30992412-30992431 | None:intergenic | 20.0% |
| !! | CTTAAGTAGTGATAATATAT+TGG | + | chr2_3:30992567-30992586 | Msa0287780:CDS | 20.0% |
| !!! | AAATATCTGAGGTAAATTAT+AGG | + | chr2_3:30992638-30992657 | Msa0287780:intron | 20.0% |
| !! | GTAAATTATAGGTCATATAT+AGG | + | chr2_3:30992649-30992668 | Msa0287780:intron | 20.0% |
| !! | GAAATTATAGAAAAGAAAAG+AGG | - | chr2_3:30992921-30992940 | None:intergenic | 20.0% |
| !! | AAATTCTTATCCTTAAGTAT+AGG | + | chr2_3:30993096-30993115 | Msa0287780:intron | 20.0% |
| !!! | TAATTTTGAACCTATACTTA+AGG | - | chr2_3:30993109-30993128 | None:intergenic | 20.0% |
| !! | ACAATGGTTTATGATAATTA+TGG | - | chr2_3:30993246-30993265 | None:intergenic | 20.0% |
| !! | AAACATTCTTTCTTTAGTTA+TGG | + | chr2_3:30993625-30993644 | Msa0287780:intron | 20.0% |
| !! | AACATTCTTTCTTTAGTTAT+GGG | + | chr2_3:30993626-30993645 | Msa0287780:intron | 20.0% |
| !!! | CTTGTTATTTCAAATTTCAA+TGG | - | chr2_3:30994090-30994109 | None:intergenic | 20.0% |
| !!! | CATTGAAATTTGAAATAACA+AGG | + | chr2_3:30994088-30994107 | Msa0287780:intron | 20.0% |
| ! | CAAAAAGAATATTACAGTGT+TGG | - | chr2_3:30993025-30993044 | None:intergenic | 25.0% |
| ! | ATTATATGTGAATCTGAATC+AGG | + | chr2_3:30993134-30993153 | Msa0287780:intron | 25.0% |
| ! | AACCATTGTTTGTGTTAATT+TGG | + | chr2_3:30993257-30993276 | Msa0287780:intron | 25.0% |
| ! | AACCAAATTAACACAAACAA+TGG | - | chr2_3:30993262-30993281 | None:intergenic | 25.0% |
| ! | TTCAATCAATGACAAAAGAT+AGG | - | chr2_3:30993360-30993379 | None:intergenic | 25.0% |
| !! | AAGAAAGAAAGATGAGTTTT+TGG | + | chr2_3:30993406-30993425 | Msa0287780:intron | 25.0% |
| !!! | ACTTTTCTCTGAAATTGAAT+AGG | + | chr2_3:30993771-30993790 | Msa0287780:intron | 25.0% |
| ! | GAAATTGAATAGGACAAAAA+TGG | + | chr2_3:30993781-30993800 | Msa0287780:intron | 25.0% |
| ! | AAAAGAAAGAAAAGAATACC+TGG | - | chr2_3:30994291-30994310 | None:intergenic | 25.0% |
| ! | TACTAAAATCATGATTCCAT+GGG | - | chr2_3:30994328-30994347 | None:intergenic | 25.0% |
| ! | ATACTAAAATCATGATTCCA+TGG | - | chr2_3:30994329-30994348 | None:intergenic | 25.0% |
| ! | TATCATCAAGTGCATAAATT+GGG | + | chr2_3:30994559-30994578 | Msa0287780:intron | 25.0% |
| ! | TATAATAAACAGAATGCAGA+AGG | + | chr2_3:30994749-30994768 | Msa0287780:intron | 25.0% |
| ! | ATATGAAGCAAGAAAATTTG+TGG | + | chr2_3:30994898-30994917 | Msa0287780:three_prime_UTR | 25.0% |
| ! | TATATGCATGCCATTAATTA+TGG | + | chr2_3:30994988-30995007 | Msa0287780:three_prime_UTR | 25.0% |
| ! | TGATGATCAACCATAATTAA+TGG | - | chr2_3:30995001-30995020 | None:intergenic | 25.0% |
| ! | AATTTAATTAGATCAGAGAG+AGG | - | chr2_3:30995044-30995063 | None:intergenic | 25.0% |
| !!! | TGAGTTGATCTTATTAAGTT+TGG | + | chr2_3:30995075-30995094 | Msa0287780:three_prime_UTR | 25.0% |
| ! | CTTCAATTGATATGTAAGTT+TGG | + | chr2_3:30995105-30995124 | Msa0287780:three_prime_UTR | 25.0% |
| ACAAGGAAATATCATCACAA+AGG | + | chr2_3:30991735-30991754 | Msa0287780:five_prime_UTR | 30.0% | |
| TGATATATGTGTAAGGACTA+AGG | - | chr2_3:30991855-30991874 | None:intergenic | 30.0% | |
| AGTCTCATGATATATGTGTA+AGG | - | chr2_3:30991862-30991881 | None:intergenic | 30.0% | |
| TTTCTGTCAAGGAATTGAAA+GGG | - | chr2_3:30991989-30992008 | None:intergenic | 30.0% | |
| ! | TTTTCTGTCAAGGAATTGAA+AGG | - | chr2_3:30991990-30992009 | None:intergenic | 30.0% |
| ! | TTCAGCATTATTTTCTGTCA+AGG | - | chr2_3:30992000-30992019 | None:intergenic | 30.0% |
| ! | GTGATTTAAAATTGTGGTGA+TGG | - | chr2_3:30992115-30992134 | None:intergenic | 30.0% |
| ! | GCAACTGTGATTTAAAATTG+TGG | - | chr2_3:30992121-30992140 | None:intergenic | 30.0% |
| ! | CTACAGTATAGAAGATTTTG+AGG | - | chr2_3:30992166-30992185 | None:intergenic | 30.0% |
| ! | TACATGGTGTGAAAATTTTG+AGG | + | chr2_3:30992265-30992284 | Msa0287780:intron | 30.0% |
| ! | ACATGGTGTGAAAATTTTGA+GGG | + | chr2_3:30992266-30992285 | Msa0287780:intron | 30.0% |
| ! | TTTTGTATGTTTTGCAGTAC+TGG | + | chr2_3:30992289-30992308 | Msa0287780:intron | 30.0% |
| AACCTAAAAACTCAGAAAAC+TGG | + | chr2_3:30992353-30992372 | Msa0287780:CDS | 30.0% | |
| ACCTAAAAACTCAGAAAACT+GGG | + | chr2_3:30992354-30992373 | Msa0287780:CDS | 30.0% | |
| ATAAATGGAACTCTTGAAGA+TGG | - | chr2_3:30992397-30992416 | None:intergenic | 30.0% | |
| ATCTTCAAGAGTTCCATTTA+TGG | + | chr2_3:30992396-30992415 | Msa0287780:CDS | 30.0% | |
| ATAAAGCATGAAGTTTCTCA+AGG | + | chr2_3:30992424-30992443 | Msa0287780:CDS | 30.0% | |
| AGAATTTCTATGGTCAACAA+GGG | + | chr2_3:30992449-30992468 | Msa0287780:CDS | 30.0% | |
| ATTGGATTTCACTTACAACA+AGG | + | chr2_3:30992585-30992604 | Msa0287780:CDS | 30.0% | |
| TTTACCTCAGATATTTGATC+TGG | - | chr2_3:30992634-30992653 | None:intergenic | 30.0% | |
| AACTACTGGAGTTAATAAGA+AGG | + | chr2_3:30992828-30992847 | Msa0287780:CDS | 30.0% | |
| TGTGAGTAATTAACCTTTAG+AGG | - | chr2_3:30992883-30992902 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTACCTTTCCAAA+TGG | - | chr2_3:30993213-30993232 | None:intergenic | 30.0% |
| AACAACTACTATTTCATGTG+TGG | - | chr2_3:30993297-30993316 | None:intergenic | 30.0% | |
| AAAGATAGGTACACAGAAAT+TGG | - | chr2_3:30993346-30993365 | None:intergenic | 30.0% | |
| TCTGTATTATTAGAAGCCAT+TGG | + | chr2_3:30993457-30993476 | Msa0287780:CDS | 30.0% | |
| TCAGAGAAAAGTGAAACATT+GGG | - | chr2_3:30993763-30993782 | None:intergenic | 30.0% | |
| TTCAGAGAAAAGTGAAACAT+TGG | - | chr2_3:30993764-30993783 | None:intergenic | 30.0% | |
| GTAGTAATAACTGTAAAGAG+AGG | - | chr2_3:30994019-30994038 | None:intergenic | 30.0% | |
| AAAGAAAAGAATACCTGGTT+TGG | - | chr2_3:30994286-30994305 | None:intergenic | 30.0% | |
| ACTAAAATCATGATTCCATG+GGG | - | chr2_3:30994327-30994346 | None:intergenic | 30.0% | |
| ! | ATGCACTTGATGATACTATA+TGG | - | chr2_3:30994554-30994573 | None:intergenic | 30.0% |
| GTATCATCAAGTGCATAAAT+TGG | + | chr2_3:30994558-30994577 | Msa0287780:intron | 30.0% | |
| ! | TGAATTTTCTGTGAGTTGTT+AGG | + | chr2_3:30994650-30994669 | Msa0287780:intron | 30.0% |
| TATGGTTGATCATCAATAAC+TGG | + | chr2_3:30995006-30995025 | Msa0287780:three_prime_UTR | 30.0% | |
| CCAAACAAGACTTTGGATAA+AGG | - | chr2_3:30991707-30991726 | None:intergenic | 35.0% | |
| !! | CCTTTATCCAAAGTCTTGTT+TGG | + | chr2_3:30991704-30991723 | Msa0287780:five_prime_UTR | 35.0% |
| TATATGTGTAAGGACTAAGG+AGG | - | chr2_3:30991852-30991871 | None:intergenic | 35.0% | |
| TGATCCATTGTAGCAAATGA+TGG | + | chr2_3:30991884-30991903 | Msa0287780:exon | 35.0% | |
| ATCCAAGCATATATTGAGGA+GGG | - | chr2_3:30991956-30991975 | None:intergenic | 35.0% | |
| GAAGATCCAAGCATATATTG+AGG | - | chr2_3:30991960-30991979 | None:intergenic | 35.0% | |
| !!! | CAAGCTACGGTTTTAAATTG+CGG | - | chr2_3:30992196-30992215 | None:intergenic | 35.0% |
| ! | TCCCAGTTTTCTGAGTTTTT+AGG | - | chr2_3:30992358-30992377 | None:intergenic | 35.0% |
| TCTCAAGGTGAGAATTTCTA+TGG | + | chr2_3:30992439-30992458 | Msa0287780:CDS | 35.0% | |
| GAGAATTTCTATGGTCAACA+AGG | + | chr2_3:30992448-30992467 | Msa0287780:CDS | 35.0% | |
| ACAACCAGATCAAATATCTG+AGG | + | chr2_3:30992627-30992646 | Msa0287780:CDS | 35.0% | |
| TAGTGTAATAGCTCAACTAC+TGG | + | chr2_3:30992814-30992833 | Msa0287780:intron | 35.0% | |
| TGGAGTTAATAAGAAGGCTA+GGG | + | chr2_3:30992834-30992853 | Msa0287780:CDS | 35.0% | |
| ! | AATTAACCTTTAGAGGTGGT+TGG | - | chr2_3:30992876-30992895 | None:intergenic | 35.0% |
| ! | GAGTAATTAACCTTTAGAGG+TGG | - | chr2_3:30992880-30992899 | None:intergenic | 35.0% |
| TAGAAACCTGATGTATCCAA+TGG | - | chr2_3:30993476-30993495 | None:intergenic | 35.0% | |
| GTTTCTACAGAGTCAAATTG+AGG | + | chr2_3:30993489-30993508 | Msa0287780:CDS | 35.0% | |
| ! | TTATTCCTCTCTTTTGTTGC+AGG | + | chr2_3:30993661-30993680 | Msa0287780:intron | 35.0% |
| CAGCATCAAAAAACATGATG+AGG | + | chr2_3:30993711-30993730 | Msa0287780:CDS | 35.0% | |
| ! | TTTTATTCCCATCTAGCTGT+TGG | + | chr2_3:30994225-30994244 | Msa0287780:intron | 35.0% |
| !! | AAGAATACCTGGTTTGGAAT+TGG | - | chr2_3:30994280-30994299 | None:intergenic | 35.0% |
| AGCATTTGAACACATGTAGT+AGG | - | chr2_3:30994698-30994717 | None:intergenic | 35.0% | |
| ACAGAATGCAGAAGGTAATA+AGG | + | chr2_3:30994757-30994776 | Msa0287780:intron | 35.0% | |
| CAAAGAACTTGAAGAGTAGA+GGG | + | chr2_3:30994780-30994799 | Msa0287780:CDS | 35.0% | |
| CAACATGTTGGAAGTGAAAA+TGG | + | chr2_3:30994830-30994849 | Msa0287780:CDS | 35.0% | |
| TGAAAATGGAGCTGATTACT+GGG | + | chr2_3:30994844-30994863 | Msa0287780:CDS | 35.0% | |
| ! | GTCATTCTGTGGTAATGAAA+AGG | + | chr2_3:30994944-30994963 | Msa0287780:three_prime_UTR | 35.0% |
| TGTGCAACCAAACAAGACTT+TGG | - | chr2_3:30991714-30991733 | None:intergenic | 40.0% | |
| CTTGTTTGGTTGCACATACA+AGG | + | chr2_3:30991718-30991737 | Msa0287780:five_prime_UTR | 40.0% | |
| CATTGTAGCAAATGATGGCT+GGG | + | chr2_3:30991889-30991908 | Msa0287780:exon | 40.0% | |
| GGAGGGATATTCAAAGATGA+TGG | - | chr2_3:30991939-30991958 | None:intergenic | 40.0% | |
| ATCCCTCCTCAATATATGCT+TGG | + | chr2_3:30991951-30991970 | Msa0287780:CDS | 40.0% | |
| GATCCAAGCATATATTGAGG+AGG | - | chr2_3:30991957-30991976 | None:intergenic | 40.0% | |
| ! | AGTAGTTGACTCCATGATTG+AGG | - | chr2_3:30992029-30992048 | None:intergenic | 40.0% |
| GATGCTGTAACTTCAAGCTA+CGG | - | chr2_3:30992209-30992228 | None:intergenic | 40.0% | |
| TGGTTCATCTTGGTCACATA+TGG | + | chr2_3:30992510-30992529 | Msa0287780:CDS | 40.0% | |
| AGCTAGTGATATGAGAGCTT+GGG | - | chr2_3:30992549-30992568 | None:intergenic | 40.0% | |
| AAGCTAGTGATATGAGAGCT+TGG | - | chr2_3:30992550-30992569 | None:intergenic | 40.0% | |
| CTGGAGTTAATAAGAAGGCT+AGG | + | chr2_3:30992833-30992852 | Msa0287780:CDS | 40.0% | |
| ATGTGAATCTGAATCAGGTG+AGG | + | chr2_3:30993139-30993158 | Msa0287780:intron | 40.0% | |
| TTCCAAATGGAGAAACTAGC+TGG | - | chr2_3:30993200-30993219 | None:intergenic | 40.0% | |
| ! | GCTAGTTTCTCCATTTGGAA+AGG | + | chr2_3:30993200-30993219 | Msa0287780:CDS | 40.0% |
| TAGAAGCCATTGGATACATC+AGG | + | chr2_3:30993467-30993486 | Msa0287780:CDS | 40.0% | |
| TCCAATAAAGCATACCTGAC+CGG | - | chr2_3:30993949-30993968 | None:intergenic | 40.0% | |
| !! | TTGGAGCGCTCTTTCTTTTT+AGG | - | chr2_3:30994261-30994280 | None:intergenic | 40.0% |
| TCTGTGAGTTGTTAGGTCAT+TGG | + | chr2_3:30994657-30994676 | Msa0287780:intron | 40.0% | |
| GCAAAGAACTTGAAGAGTAG+AGG | + | chr2_3:30994779-30994798 | Msa0287780:CDS | 40.0% | |
| GTGAAAATGGAGCTGATTAC+TGG | + | chr2_3:30994843-30994862 | Msa0287780:CDS | 40.0% | |
| TAAAACCCACTTCCAAATGC+TGG | - | chr2_3:30994872-30994891 | None:intergenic | 40.0% | |
| ! | CCAGCCATCATTTGCTACAA+TGG | - | chr2_3:30991891-30991910 | None:intergenic | 45.0% |
| CCATTGTAGCAAATGATGGC+TGG | + | chr2_3:30991888-30991907 | Msa0287780:exon | 45.0% | |
| ! | CTGAAGTACCTCCTCAATCA+TGG | + | chr2_3:30992015-30992034 | Msa0287780:CDS | 45.0% |
| ! | AGTTGACTCCATGATTGAGG+AGG | - | chr2_3:30992026-30992045 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGTA+TGG | - | chr2_3:30992065-30992084 | None:intergenic | 45.0% | |
| !! | TTTTGCAGTACTGGACTACC+TGG | + | chr2_3:30992298-30992317 | Msa0287780:intron | 45.0% |
| CTGGATCACTTGGTTCATCT+TGG | + | chr2_3:30992500-30992519 | Msa0287780:CDS | 45.0% | |
| GCTAGTGATATGAGAGCTTG+GGG | - | chr2_3:30992548-30992567 | None:intergenic | 45.0% | |
| TTCAAGCCAACCACCTCTAA+AGG | + | chr2_3:30992867-30992886 | Msa0287780:CDS | 45.0% | |
| GAATCTGAATCAGGTGAGGA+AGG | + | chr2_3:30993143-30993162 | Msa0287780:intron | 45.0% | |
| ! | CACCAGCTAGTTTCTCCATT+TGG | + | chr2_3:30993195-30993214 | Msa0287780:CDS | 45.0% |
| ATGCTGCAGTGTCCAAGTAA+GGG | - | chr2_3:30993697-30993716 | None:intergenic | 45.0% | |
| TCTGTATTTCCTGAAGACCC+CGG | + | chr2_3:30993927-30993946 | Msa0287780:CDS | 45.0% | |
| CAATAAAGCATACCTGACCG+GGG | - | chr2_3:30993947-30993966 | None:intergenic | 45.0% | |
| CCAATAAAGCATACCTGACC+GGG | - | chr2_3:30993948-30993967 | None:intergenic | 45.0% | |
| GTGTCATCCAACAGCTAGAT+GGG | - | chr2_3:30994235-30994254 | None:intergenic | 45.0% | |
| AGTGTCATCCAACAGCTAGA+TGG | - | chr2_3:30994236-30994255 | None:intergenic | 45.0% | |
| ATCTAGCTGTTGGATGACAC+TGG | + | chr2_3:30994235-30994254 | Msa0287780:intron | 45.0% | |
| TTTCTACAAAAGCTGCCCCA+TGG | + | chr2_3:30994309-30994328 | Msa0287780:intron | 45.0% | |
| ACATGTTGTGTGCATGACAC+TGG | - | chr2_3:30994818-30994837 | None:intergenic | 45.0% | |
| GTGTCATGCACACAACATGT+TGG | + | chr2_3:30994818-30994837 | Msa0287780:CDS | 45.0% | |
| CATCATGAGCAGTCATTCTG+TGG | + | chr2_3:30994933-30994952 | Msa0287780:three_prime_UTR | 45.0% | |
| !! | ATAAATAAATAAGAATAATA+TGG | - | chr2_3:30993523-30993542 | None:intergenic | 5.0% |
| GATGCATGCTCCACCAGTTA+GGG | - | chr2_3:30991917-30991936 | None:intergenic | 50.0% | |
| CCAAGTCTCTCTTCTTCACC+AGG | - | chr2_3:30992319-30992338 | None:intergenic | 50.0% | |
| CCTGGTGAAGAAGAGAGACT+TGG | + | chr2_3:30992316-30992335 | Msa0287780:CDS | 50.0% | |
| !! | TCAACAAGGGCATCATCCTG+AGG | + | chr2_3:30992462-30992481 | Msa0287780:CDS | 50.0% |
| GAGTTAGCACGAAACTCCTC+AGG | - | chr2_3:30992481-30992500 | None:intergenic | 50.0% | |
| GAGGAGTTTCGTGCTAACTC+TGG | + | chr2_3:30992481-30992500 | Msa0287780:CDS | 50.0% | |
| CGTGCTAACTCTGGATCACT+TGG | + | chr2_3:30992490-30992509 | Msa0287780:CDS | 50.0% | |
| TGAGAGCTTGGGGAAGAAAC+TGG | - | chr2_3:30992538-30992557 | None:intergenic | 50.0% | |
| !! | AGAGGTGGTTGGCTTGAAGA+TGG | - | chr2_3:30992865-30992884 | None:intergenic | 50.0% |
| GAGTGCCTGCAACAAAAGAG+AGG | - | chr2_3:30993669-30993688 | None:intergenic | 50.0% | |
| TGCTGCAGTGTCCAAGTAAG+GGG | - | chr2_3:30993696-30993715 | None:intergenic | 50.0% | |
| GATGCTGCAGTGTCCAAGTA+AGG | - | chr2_3:30993698-30993717 | None:intergenic | 50.0% | |
| CCCGGTCAGGTATGCTTTAT+TGG | + | chr2_3:30993945-30993964 | Msa0287780:intron | 50.0% | |
| GAAGAGTAGAGGGTTGTGCT+TGG | + | chr2_3:30994790-30994809 | Msa0287780:CDS | 50.0% | |
| GATTACTGGGCACCAGCATT+TGG | + | chr2_3:30994857-30994876 | Msa0287780:CDS | 50.0% | |
| TGATGGCTGGGAACCCTAAC+TGG | + | chr2_3:30991901-30991920 | Msa0287780:CDS | 55.0% | |
| GGATGCATGCTCCACCAGTT+AGG | - | chr2_3:30991918-30991937 | None:intergenic | 55.0% | |
| CAGGTGAGGAAGGAGAAGCT+AGG | + | chr2_3:30993153-30993172 | Msa0287780:intron | 55.0% | |
| ATTTCCTGAAGACCCCGGTC+AGG | + | chr2_3:30993932-30993951 | Msa0287780:CDS | 55.0% | |
| GAGCGCTCCAATTCCAAACC+AGG | + | chr2_3:30994270-30994289 | Msa0287780:CDS | 55.0% | |
| TGGGCACCAGCATTTGGAAG+TGG | + | chr2_3:30994863-30994882 | Msa0287780:CDS | 55.0% | |
| GGGCACCAGCATTTGGAAGT+GGG | + | chr2_3:30994864-30994883 | Msa0287780:CDS | 55.0% | |
| TGGCTGGGAACCCTAACTGG+TGG | + | chr2_3:30991904-30991923 | Msa0287780:CDS | 60.0% | |
| GGCACTCAGCACCCCTTACT+TGG | + | chr2_3:30993682-30993701 | Msa0287780:intron | 60.0% | |
| CATACCTGACCGGGGTCTTC+AGG | - | chr2_3:30993939-30993958 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 30991643 | 30995222 | 30991643 | ID=Msa0287780;Name=Msa0287780 |
| chr2_3 | mRNA | 30991643 | 30995222 | 30991643 | ID=Msa0287780-mRNA-1;Parent=Msa0287780;Name=Msa0287780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=257|1|1|1|1|1|9|330|329 |
| chr2_3 | exon | 30991643 | 30992051 | 30991643 | ID=Msa0287780-mRNA-1:exon:10601;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30992306 | 30992648 | 30992306 | ID=Msa0287780-mRNA-1:exon:10602;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30992817 | 30992888 | 30992817 | ID=Msa0287780-mRNA-1:exon:10603;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30993156 | 30993221 | 30993156 | ID=Msa0287780-mRNA-1:exon:10604;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30993445 | 30993510 | 30993445 | ID=Msa0287780-mRNA-1:exon:10605;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30993683 | 30993745 | 30993683 | ID=Msa0287780-mRNA-1:exon:10606;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30993909 | 30993953 | 30993909 | ID=Msa0287780-mRNA-1:exon:10607;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30994241 | 30994291 | 30994241 | ID=Msa0287780-mRNA-1:exon:10608;Parent=Msa0287780-mRNA-1 |
| chr2_3 | exon | 30994761 | 30995222 | 30994761 | ID=Msa0287780-mRNA-1:exon:10609;Parent=Msa0287780-mRNA-1 |
| chr2_3 | five_prime_UTR | 30991643 | 30991899 | 30991643 | ID=Msa0287780-mRNA-1:five_prime_utr;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30991900 | 30992051 | 30991900 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30992306 | 30992648 | 30992306 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30992817 | 30992888 | 30992817 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30993156 | 30993221 | 30993156 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30993445 | 30993510 | 30993445 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30993683 | 30993745 | 30993683 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30993909 | 30993953 | 30993909 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30994241 | 30994291 | 30994241 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | CDS | 30994761 | 30994892 | 30994761 | ID=Msa0287780-mRNA-1:cds;Parent=Msa0287780-mRNA-1 |
| chr2_3 | three_prime_UTR | 30994893 | 30995222 | 30994893 | ID=Msa0287780-mRNA-1:three_prime_utr;Parent=Msa0287780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
