Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120530 | XP_013468029.1 | 100.000 | 149 | 0 | 0 | 15 | 163 | 1 | 149 | 8.56e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120530 | sp|Q9UTK2|RM19_SCHPO | 51.852 | 135 | 65 | 0 | 25 | 159 | 9 | 143 | 3.82e-45 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120530 | A0A072VKA9 | 100.000 | 149 | 0 | 0 | 15 | 163 | 1 | 149 | 4.09e-105 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034400 | Msa0120530 | -0.826810 | 2.211927e-54 | -8.615850e-47 |
| Msa0065680 | Msa0120530 | 0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa0083090 | Msa0120530 | -0.821893 | 3.169630e-53 | -8.615850e-47 |
| Msa0120530 | Msa0163770 | 0.882600 | 9.095319e-71 | -8.615850e-47 |
| Msa0120530 | Msa0175420 | -0.834182 | 3.474063e-56 | -8.615850e-47 |
| Msa0120530 | Msa0232340 | -0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0120530 | Msa0546870 | 0.807790 | 4.254424e-50 | -8.615850e-47 |
| Msa0120530 | Msa0798010 | -0.804080 | 2.564496e-49 | -8.615850e-47 |
| Msa0120530 | Msa0844110 | -0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa0120530 | Msa1006010 | 0.801178 | 1.017631e-48 | -8.615850e-47 |
| Msa0120530 | Msa1029060 | 0.822841 | 1.908908e-53 | -8.615850e-47 |
| Msa0120530 | Msa1048070 | 0.812496 | 4.117928e-51 | -8.615850e-47 |
| Msa0120530 | Msa1080330 | 0.819782 | 9.694166e-53 | -8.615850e-47 |
| Msa0120530 | Msa1156150 | 0.818326 | 2.078216e-52 | -8.615850e-47 |
| Msa0120530 | Msa1257650 | 0.803097 | 4.102302e-49 | -8.615850e-47 |
| Msa0120530 | Msa1257800 | 0.805659 | 1.199431e-49 | -8.615850e-47 |
| Msa0120530 | Msa1335230 | -0.806136 | 9.522898e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120530 | MtrunA17_Chr1g0179011 | 100.000 | 149 | 0 | 0 | 15 | 163 | 1 | 149 | 7.87e-109 | 306 |
| Msa0120530 | MtrunA17_Chr3g0119811 | 40.994 | 161 | 85 | 3 | 5 | 158 | 45 | 202 | 2.45e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120530 | AT4G35490.2 | 85.315 | 143 | 21 | 0 | 21 | 163 | 13 | 155 | 2.72e-91 | 262 |
| Msa0120530 | AT4G35490.1 | 85.315 | 143 | 21 | 0 | 21 | 163 | 13 | 155 | 2.72e-91 | 262 |
| Msa0120530 | AT1G32990.1 | 44.286 | 140 | 75 | 2 | 19 | 158 | 72 | 208 | 5.57e-28 | 103 |
Find 87 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAGGGTTTAGTTAAAT+TGG | 0.157888 | 1_3:-45461866 | None:intergenic |
| TCCATTTCTAAATCCATTAT+TGG | 0.175466 | 1_3:+45464524 | Msa0120530:CDS |
| TGCAAAGAGTTTCGTTAATC+TGG | 0.261218 | 1_3:-45462071 | None:intergenic |
| GTAACAGCCATTGGTGTATC+AGG | 0.275383 | 1_3:-45464299 | None:intergenic |
| GTTGCAGAGAGACTGAAATT+AGG | 0.286232 | 1_3:-45461881 | None:intergenic |
| GGTATCATGACAACACAAAA+TGG | 0.296845 | 1_3:-45463130 | None:intergenic |
| CGATACCCGCAGCTTTCTTC+AGG | 0.313010 | 1_3:-45464385 | None:intergenic |
| GCTCCTAGCTGTACCAATAA+TGG | 0.322397 | 1_3:-45464537 | None:intergenic |
| TTCGGAACGCTCATCGTTGA+TGG | 0.343708 | 1_3:-45464134 | None:intergenic |
| CTACTTGGCCACTCACAAAA+TGG | 0.344339 | 1_3:+45464678 | Msa0120530:three_prime_UTR |
| ACAGTCTGATCCTTACTTGC+AGG | 0.357839 | 1_3:+45464487 | Msa0120530:CDS |
| TTGCAGAGAGACTGAAATTA+GGG | 0.361257 | 1_3:-45461880 | None:intergenic |
| AGATTAACGAAACTCTTTGC+AGG | 0.372535 | 1_3:+45462073 | Msa0120530:five_prime_UTR |
| AATTAGGGTTTAGTTAAATT+GGG | 0.377195 | 1_3:-45461865 | None:intergenic |
| TTTGTTGAATACAAGTTTAG+TGG | 0.393063 | 1_3:+45464716 | Msa0120530:three_prime_UTR |
| ACCAATAATGGATTTAGAAA+TGG | 0.398795 | 1_3:-45464525 | None:intergenic |
| GAAAGCTGCGGGTATCGAAT+TGG | 0.398936 | 1_3:+45464391 | Msa0120530:CDS |
| GGAGGTGGCGGTCACATGAC+CGG | 0.412632 | 1_3:-45464426 | None:intergenic |
| GGAATTACAAAATTATGTTC+AGG | 0.416240 | 1_3:-45461844 | None:intergenic |
| TATTTGACAAGTGAAAATAT+TGG | 0.418197 | 1_3:+45464894 | Msa0120530:three_prime_UTR |
| ATTGTCGCTGCTACCACTTT+CGG | 0.429301 | 1_3:-45464152 | None:intergenic |
| AGTGGCATACCCTGCAAGTA+AGG | 0.435747 | 1_3:-45464497 | None:intergenic |
| TTATGTTTCAAATCTCTACT+TGG | 0.440526 | 1_3:+45464663 | Msa0120530:three_prime_UTR |
| TCTCTCTGTATGATTTCTCC+AGG | 0.442085 | 1_3:+45461940 | Msa0120530:five_prime_UTR |
| AACGATGAGCGTTCCGAAAG+TGG | 0.442624 | 1_3:+45464139 | Msa0120530:CDS |
| CCTCCTGTGGGACCTGCGCT+AGG | 0.444053 | 1_3:+45464212 | Msa0120530:CDS |
| TTGTCATGATACCTTTGTCT+AGG | 0.445610 | 1_3:+45463140 | Msa0120530:exon |
| CTCCAGCTGGAACTCTCAAC+CGG | 0.454096 | 1_3:-45464175 | None:intergenic |
| TCCAGCTGGAGGAGCACGTC+CGG | 0.454983 | 1_3:+45464187 | Msa0120530:CDS |
| ATGTTCTATATTAGTCTAGC+TGG | 0.464554 | 1_3:+45464842 | Msa0120530:three_prime_UTR |
| AGCACGTCCGGCGCCTCCTG+TGG | 0.466575 | 1_3:+45464199 | Msa0120530:CDS |
| AAAGCTGCGGGTATCGAATT+GGG | 0.473529 | 1_3:+45464392 | Msa0120530:CDS |
| AGTGGCAGAAATTGATGTCC+TGG | 0.480407 | 1_3:+45464734 | Msa0120530:three_prime_UTR |
| TTCAATACTTTCAAAAGCAA+AGG | 0.480430 | 1_3:-45464612 | None:intergenic |
| TTTAGACTATAAAATTCATA+CGG | 0.484522 | 1_3:+45461781 | None:intergenic |
| AGTCTTTGCAGAAAGCCATA+AGG | 0.492679 | 1_3:-45464250 | None:intergenic |
| GCTGTTATTGTAACAGCCAT+TGG | 0.492932 | 1_3:-45464308 | None:intergenic |
| GGCGGTCACATGACCGGGAC+GGG | 0.494244 | 1_3:-45464420 | None:intergenic |
| TCAGTACCGACTGAACCTTA+TGG | 0.497875 | 1_3:+45464235 | Msa0120530:CDS |
| TGTCATGATACCTTTGTCTA+GGG | 0.505391 | 1_3:+45463141 | Msa0120530:exon |
| AAGTGGTAGCAGCGACAATC+CGG | 0.509428 | 1_3:+45464156 | Msa0120530:CDS |
| GAACGCTCATCGTTGATGGC+TGG | 0.511519 | 1_3:-45464130 | None:intergenic |
| GCCGGACGTGCTCCTCCAGC+TGG | 0.512277 | 1_3:-45464188 | None:intergenic |
| TTGAAAGTATTGAATAACTT+CGG | 0.513554 | 1_3:+45464621 | Msa0120530:three_prime_UTR |
| GCACGTCCGGCGCCTCCTGT+GGG | 0.517535 | 1_3:+45464200 | Msa0120530:CDS |
| CATACACGTGCCGAAGTGAC+AGG | 0.517596 | 1_3:-45464448 | None:intergenic |
| GAGGTGGCGGTCACATGACC+GGG | 0.519759 | 1_3:-45464425 | None:intergenic |
| CCGAAGTGACAGGGAGGTGG+CGG | 0.522973 | 1_3:-45464438 | None:intergenic |
| CAGAAATTGATGTCCTGGTA+TGG | 0.528426 | 1_3:+45464739 | Msa0120530:three_prime_UTR |
| TGTTACAATAACAGCTTACA+AGG | 0.549953 | 1_3:+45464316 | Msa0120530:CDS |
| TGACCTAGCGCAGGTCCCAC+AGG | 0.552959 | 1_3:-45464215 | None:intergenic |
| GAGTGGTGAAAATTTGAGAA+GGG | 0.565321 | 1_3:-45463099 | None:intergenic |
| GCAGGTCCCACAGGAGGCGC+CGG | 0.567732 | 1_3:-45464206 | None:intergenic |
| TTAGACTATAAAATTCATAC+GGG | 0.571573 | 1_3:+45461782 | None:intergenic |
| ATTGGTACAGCTAGGAGCAT+GGG | 0.571876 | 1_3:+45464542 | Msa0120530:CDS |
| AGATTATTTATATCCATACC+AGG | 0.577644 | 1_3:-45464752 | None:intergenic |
| CCGCCACCTCCCTGTCACTT+CGG | 0.584871 | 1_3:+45464438 | Msa0120530:CDS |
| TGGTACCTGAAGAAAGCTGC+GGG | 0.584881 | 1_3:+45464380 | Msa0120530:CDS |
| ATCCGGTTGAGAGTTCCAGC+TGG | 0.592293 | 1_3:+45464173 | Msa0120530:CDS |
| TATTGGTACAGCTAGGAGCA+TGG | 0.593721 | 1_3:+45464541 | Msa0120530:CDS |
| ATCTTGAATGAATTGATCAA+AGG | 0.597878 | 1_3:+45464582 | Msa0120530:exon |
| CAGTCTGATCCTTACTTGCA+GGG | 0.597928 | 1_3:+45464488 | Msa0120530:CDS |
| GTGCCGAAGTGACAGGGAGG+TGG | 0.602083 | 1_3:-45464441 | None:intergenic |
| TTAAATCTCCTTCCGTCTCG+TGG | 0.602388 | 1_3:+45464360 | Msa0120530:CDS |
| TTCAGGTACCACGAGACGGA+AGG | 0.605506 | 1_3:-45464368 | None:intergenic |
| ATTTCAGTCTCTCTGCAACT+CGG | 0.605747 | 1_3:+45461885 | Msa0120530:five_prime_UTR |
| TGGCGGTCACATGACCGGGA+CGG | 0.607191 | 1_3:-45464421 | None:intergenic |
| TTTCTTCAGGTACCACGAGA+CGG | 0.610355 | 1_3:-45464372 | None:intergenic |
| AGAGTGGTGAAAATTTGAGA+AGG | 0.617408 | 1_3:-45463100 | None:intergenic |
| AGTCGGTACTGACCTAGCGC+AGG | 0.626095 | 1_3:-45464224 | None:intergenic |
| GAATTGGGAAGTACCCGTCC+CGG | 0.626450 | 1_3:+45464407 | Msa0120530:CDS |
| TCGTTGATGGCTGGAAGTAG+CGG | 0.627637 | 1_3:-45464121 | None:intergenic |
| GAGAAGGGATTGAATCACAA+AGG | 0.635548 | 1_3:-45463084 | None:intergenic |
| AATCCATTATTGGTACAGCT+AGG | 0.638443 | 1_3:+45464534 | Msa0120530:CDS |
| CCTAGCGCAGGTCCCACAGG+AGG | 0.638505 | 1_3:-45464212 | None:intergenic |
| ATACACGTGCCGAAGTGACA+GGG | 0.645886 | 1_3:-45464447 | None:intergenic |
| AGAAAGCCATAAGGTTCAGT+CGG | 0.648161 | 1_3:-45464241 | None:intergenic |
| TCTGCAAAGACTTCAACGCA+CGG | 0.650245 | 1_3:+45464261 | Msa0120530:CDS |
| AGATTTAACAGTGAACTCAA+AGG | 0.651355 | 1_3:-45464345 | None:intergenic |
| AGTAACAGTACCCTAGACAA+AGG | 0.653943 | 1_3:-45463151 | None:intergenic |
| GATTTAGAAATGGACTCAAG+TGG | 0.655714 | 1_3:-45464515 | None:intergenic |
| ATTCAAGCCTGATACACCAA+TGG | 0.658568 | 1_3:+45464292 | Msa0120530:CDS |
| GTGGTACCTGAAGAAAGCTG+CGG | 0.662466 | 1_3:+45464379 | Msa0120530:CDS |
| CGGTTGAGAGTTCCAGCTGG+AGG | 0.663118 | 1_3:+45464176 | Msa0120530:CDS |
| GCACGTGTATGAGATCGCTA+AGG | 0.664058 | 1_3:+45464460 | Msa0120530:CDS |
| ACAAAATGGAATATGCAGAG+TGG | 0.731826 | 1_3:-45463116 | None:intergenic |
| CACGTGCCGAAGTGACAGGG+AGG | 0.790794 | 1_3:-45464444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAAAATTAGTAG+TGG | + | chr1_3:45462336-45462355 | Msa0120530:intron | 10.0% |
| !!! | ATTTCAATTTTGTTGTTATT+AGG | + | chr1_3:45462024-45462043 | Msa0120530:intron | 15.0% |
| !!! | TGTTTCTAATATATTTTCTT+TGG | + | chr1_3:45462108-45462127 | Msa0120530:intron | 15.0% |
| !!! | TAGAAAAATTGTTTTCTATT+AGG | + | chr1_3:45463393-45463412 | Msa0120530:intron | 15.0% |
| !! | AACTATTCATATAATCAAAT+GGG | - | chr1_3:45463511-45463530 | None:intergenic | 15.0% |
| !! | AATTAGGGTTTAGTTAAATT+GGG | - | chr1_3:45461868-45461887 | None:intergenic | 20.0% |
| !! | AAATTAGGGTTTAGTTAAAT+TGG | - | chr1_3:45461869-45461888 | None:intergenic | 20.0% |
| !! | TAATCAATTTCAACGAAAAA+TGG | - | chr1_3:45462000-45462019 | None:intergenic | 20.0% |
| !! | TAGCTATCAAAATCAATTAA+GGG | - | chr1_3:45462189-45462208 | None:intergenic | 20.0% |
| !! | ATAGCTATCAAAATCAATTA+AGG | - | chr1_3:45462190-45462209 | None:intergenic | 20.0% |
| !!! | GTTACTTTTGTATGTTTTAT+AGG | + | chr1_3:45463023-45463042 | Msa0120530:intron | 20.0% |
| !! | ATATGCTAGAATAAAAAGAT+AGG | + | chr1_3:45463201-45463220 | Msa0120530:intron | 20.0% |
| !! | CAACTATTCATATAATCAAA+TGG | - | chr1_3:45463512-45463531 | None:intergenic | 20.0% |
| !!! | CTTCATATTTTTGTTCTTAT+TGG | + | chr1_3:45463661-45463680 | Msa0120530:intron | 20.0% |
| !!! | TTGAAAGTATTGAATAACTT+CGG | + | chr1_3:45464621-45464640 | Msa0120530:three_prime_UTR | 20.0% |
| !!! | AATATTTTCACTTGTCAAAT+AGG | - | chr1_3:45464895-45464914 | None:intergenic | 20.0% |
| !! | TATTTGACAAGTGAAAATAT+TGG | + | chr1_3:45464894-45464913 | Msa0120530:three_prime_UTR | 20.0% |
| ! | GGAATTACAAAATTATGTTC+AGG | - | chr1_3:45461847-45461866 | None:intergenic | 25.0% |
| ! | AGCTATCAAAATCAATTAAG+GGG | - | chr1_3:45462188-45462207 | None:intergenic | 25.0% |
| !!! | AAGCTTTAGATAAGAAGTAT+CGG | + | chr1_3:45462642-45462661 | Msa0120530:intron | 25.0% |
| !!! | GCTTTATTTTAGATCAATTC+TGG | - | chr1_3:45462688-45462707 | None:intergenic | 25.0% |
| ! | TCCATAACATAACATATGTA+CGG | - | chr1_3:45462819-45462838 | None:intergenic | 25.0% |
| ! | AATCGAACTCAAATTTGAAA+TGG | - | chr1_3:45462945-45462964 | None:intergenic | 25.0% |
| !!! | TGTTTTTACTCTTTTCTTGA+AGG | + | chr1_3:45462992-45463011 | Msa0120530:intron | 25.0% |
| !! | GTTTTTACTCTTTTCTTGAA+GGG | + | chr1_3:45462993-45463012 | Msa0120530:intron | 25.0% |
| ! | TTCAATAAAGAGAAGACTAA+AGG | + | chr1_3:45463250-45463269 | Msa0120530:intron | 25.0% |
| !!! | AAGCATAAAAAGTGTTATGT+TGG | + | chr1_3:45463288-45463307 | Msa0120530:intron | 25.0% |
| ! | GAATCTAGTAAATCAATCAT+GGG | - | chr1_3:45463314-45463333 | None:intergenic | 25.0% |
| ! | AGACTTGTAAAGTTGAATTA+AGG | - | chr1_3:45463336-45463355 | None:intergenic | 25.0% |
| ! | TTCAACTTTACAAGTCTATT+AGG | + | chr1_3:45463339-45463358 | Msa0120530:intron | 25.0% |
| !! | TAGTTGATATGAATTTGTCA+TGG | + | chr1_3:45463617-45463636 | Msa0120530:intron | 25.0% |
| !!! | AGTTGGCTTAAATTTTTCAA+TGG | + | chr1_3:45463813-45463832 | Msa0120530:intron | 25.0% |
| ! | TGTTGGAAATTAGTAAATAG+AGG | + | chr1_3:45463864-45463883 | Msa0120530:intron | 25.0% |
| !! | GATATTTTCAAAAACTAGAG+TGG | + | chr1_3:45463903-45463922 | Msa0120530:intron | 25.0% |
| !!! | TGAAACTTTCATGTTTTGTT+TGG | + | chr1_3:45463953-45463972 | Msa0120530:intron | 25.0% |
| ! | ATGATCTTCTAATCTTGTAT+TGG | + | chr1_3:45464043-45464062 | Msa0120530:intron | 25.0% |
| !!! | TTGGTCTGATAGTTTTTTTT+TGG | + | chr1_3:45464062-45464081 | Msa0120530:intron | 25.0% |
| !!! | TGGTCTGATAGTTTTTTTTT+GGG | + | chr1_3:45464063-45464082 | Msa0120530:intron | 25.0% |
| ! | TCCATTTCTAAATCCATTAT+TGG | + | chr1_3:45464524-45464543 | Msa0120530:CDS | 25.0% |
| !!! | ACCAATAATGGATTTAGAAA+TGG | - | chr1_3:45464528-45464547 | None:intergenic | 25.0% |
| ! | ATCTTGAATGAATTGATCAA+AGG | + | chr1_3:45464582-45464601 | Msa0120530:exon | 25.0% |
| ! | TTCAATACTTTCAAAAGCAA+AGG | - | chr1_3:45464615-45464634 | None:intergenic | 25.0% |
| ! | TTATGTTTCAAATCTCTACT+TGG | + | chr1_3:45464663-45464682 | Msa0120530:three_prime_UTR | 25.0% |
| ! | TTTGTTGAATACAAGTTTAG+TGG | + | chr1_3:45464716-45464735 | Msa0120530:three_prime_UTR | 25.0% |
| ! | AGATTATTTATATCCATACC+AGG | - | chr1_3:45464755-45464774 | None:intergenic | 25.0% |
| TTGAATGTATTCACATGTGT+CGG | - | chr1_3:45462309-45462328 | None:intergenic | 30.0% | |
| ! | CATTATTTATGAAGCACTAG+CGG | - | chr1_3:45462393-45462412 | None:intergenic | 30.0% |
| ACAAATCTATGACTTCAACA+AGG | - | chr1_3:45462472-45462491 | None:intergenic | 30.0% | |
| CAACACTAACACATTGATAT+CGG | + | chr1_3:45462535-45462554 | Msa0120530:intron | 30.0% | |
| !! | CTCTGGAATAATGCATTATA+TGG | - | chr1_3:45462745-45462764 | None:intergenic | 30.0% |
| ACCGTACATATGTTATGTTA+TGG | + | chr1_3:45462815-45462834 | Msa0120530:intron | 30.0% | |
| GTCATTCTTTCCTATTACTA+TGG | + | chr1_3:45462866-45462885 | Msa0120530:intron | 30.0% | |
| AAAGATAGGTTATAGAGTGA+TGG | + | chr1_3:45463215-45463234 | Msa0120530:intron | 30.0% | |
| AAGATAGGTTATAGAGTGAT+GGG | + | chr1_3:45463216-45463235 | Msa0120530:intron | 30.0% | |
| GGAATCTAGTAAATCAATCA+TGG | - | chr1_3:45463315-45463334 | None:intergenic | 30.0% | |
| ! | TATTTCTGCTAAGTTAACAC+TGG | + | chr1_3:45463432-45463451 | Msa0120530:intron | 30.0% |
| !!! | GAGTCCCAATTTCTTTTTTA+GGG | - | chr1_3:45463701-45463720 | None:intergenic | 30.0% |
| !!! | TGAGTCCCAATTTCTTTTTT+AGG | - | chr1_3:45463702-45463721 | None:intergenic | 30.0% |
| TAAAAAAGAAATTGGGACTC+AGG | + | chr1_3:45463701-45463720 | Msa0120530:intron | 30.0% | |
| TTGTTGATGTATAAGATCCA+TGG | - | chr1_3:45463772-45463791 | None:intergenic | 30.0% | |
| TGTCAACATAACAAAAGAGT+TGG | + | chr1_3:45463796-45463815 | Msa0120530:intron | 30.0% | |
| ! | TTTCAATGGCACTTTTCAAA+AGG | + | chr1_3:45463827-45463846 | Msa0120530:intron | 30.0% |
| TTTCAAAAGGTCAAGATGAA+AGG | + | chr1_3:45463840-45463859 | Msa0120530:intron | 30.0% | |
| TGTTACAATAACAGCTTACA+AGG | + | chr1_3:45464316-45464335 | Msa0120530:CDS | 30.0% | |
| AGATTTAACAGTGAACTCAA+AGG | - | chr1_3:45464348-45464367 | None:intergenic | 30.0% | |
| ! | ATGTTCTATATTAGTCTAGC+TGG | + | chr1_3:45464842-45464861 | Msa0120530:three_prime_UTR | 30.0% |
| TTGCAGAGAGACTGAAATTA+GGG | - | chr1_3:45461883-45461902 | None:intergenic | 35.0% | |
| AAGAAGATGAATGATGAACC+TGG | - | chr1_3:45461961-45461980 | None:intergenic | 35.0% | |
| TGCAAAGAGTTTCGTTAATC+TGG | - | chr1_3:45462074-45462093 | None:intergenic | 35.0% | |
| AGATTAACGAAACTCTTTGC+AGG | + | chr1_3:45462073-45462092 | Msa0120530:five_prime_UTR | 35.0% | |
| TCGTCTTTGATTAGAAGAGT+CGG | - | chr1_3:45462260-45462279 | None:intergenic | 35.0% | |
| AAATTTAATCACACGTGTCG+TGG | + | chr1_3:45462588-45462607 | Msa0120530:intron | 35.0% | |
| TCTATATGGTGAGAGAAAGT+TGG | - | chr1_3:45462771-45462790 | None:intergenic | 35.0% | |
| TCTCACCATATAGAACTAGA+AGG | + | chr1_3:45462777-45462796 | Msa0120530:intron | 35.0% | |
| CTCACCATATAGAACTAGAA+GGG | + | chr1_3:45462778-45462797 | Msa0120530:intron | 35.0% | |
| ACATAACATATGTACGGTCA+CGG | - | chr1_3:45462813-45462832 | None:intergenic | 35.0% | |
| GACAAGTACTCCATAGTAAT+AGG | - | chr1_3:45462879-45462898 | None:intergenic | 35.0% | |
| GAGTGGTGAAAATTTGAGAA+GGG | - | chr1_3:45463102-45463121 | None:intergenic | 35.0% | |
| AGAGTGGTGAAAATTTGAGA+AGG | - | chr1_3:45463103-45463122 | None:intergenic | 35.0% | |
| ACAAAATGGAATATGCAGAG+TGG | - | chr1_3:45463119-45463138 | None:intergenic | 35.0% | |
| GGTATCATGACAACACAAAA+TGG | - | chr1_3:45463133-45463152 | None:intergenic | 35.0% | |
| TTGTCATGATACCTTTGTCT+AGG | + | chr1_3:45463140-45463159 | Msa0120530:exon | 35.0% | |
| TGTCATGATACCTTTGTCTA+GGG | + | chr1_3:45463141-45463160 | Msa0120530:exon | 35.0% | |
| AGATAGGTTATAGAGTGATG+GGG | + | chr1_3:45463217-45463236 | Msa0120530:intron | 35.0% | |
| CCTGCCCTAAAAAAGAAATT+GGG | + | chr1_3:45463694-45463713 | Msa0120530:intron | 35.0% | |
| ATTCTTGCATCAGCTAAATC+AGG | + | chr1_3:45463736-45463755 | Msa0120530:intron | 35.0% | |
| TTCTTGCATCAGCTAAATCA+GGG | + | chr1_3:45463737-45463756 | Msa0120530:intron | 35.0% | |
| CCTCATTAGAGATCAAAACA+AGG | - | chr1_3:45463992-45464011 | None:intergenic | 35.0% | |
| !!! | CCTTGTTTTGATCTCTAATG+AGG | + | chr1_3:45463989-45464008 | Msa0120530:intron | 35.0% |
| ! | GATTTAGAAATGGACTCAAG+TGG | - | chr1_3:45464518-45464537 | None:intergenic | 35.0% |
| AATCCATTATTGGTACAGCT+AGG | + | chr1_3:45464534-45464553 | Msa0120530:CDS | 35.0% | |
| GTTGCAGAGAGACTGAAATT+AGG | - | chr1_3:45461884-45461903 | None:intergenic | 40.0% | |
| ATTTCAGTCTCTCTGCAACT+CGG | + | chr1_3:45461885-45461904 | Msa0120530:five_prime_UTR | 40.0% | |
| TCTCTCTGTATGATTTCTCC+AGG | + | chr1_3:45461940-45461959 | Msa0120530:five_prime_UTR | 40.0% | |
| CAATGTGTTAGTGTTGTGTC+CGG | - | chr1_3:45462531-45462550 | None:intergenic | 40.0% | |
| CACTAACACATTGATATCGG+TGG | + | chr1_3:45462538-45462557 | Msa0120530:intron | 40.0% | |
| !! | GCTACCCTTCTAGTTCTATA+TGG | - | chr1_3:45462785-45462804 | None:intergenic | 40.0% |
| ATAGAACTAGAAGGGTAGCA+TGG | + | chr1_3:45462786-45462805 | Msa0120530:intron | 40.0% | |
| !! | AACTAGCCACATGCTTTTTG+TGG | + | chr1_3:45462844-45462863 | Msa0120530:intron | 40.0% |
| ! | GAATGACCACAAAAAGCATG+TGG | - | chr1_3:45462853-45462872 | None:intergenic | 40.0% |
| GAGAAGGGATTGAATCACAA+AGG | - | chr1_3:45463087-45463106 | None:intergenic | 40.0% | |
| AGTAACAGTACCCTAGACAA+AGG | - | chr1_3:45463154-45463173 | None:intergenic | 40.0% | |
| GCCTGCCCTAAAAAAGAAAT+TGG | + | chr1_3:45463693-45463712 | Msa0120530:intron | 40.0% | |
| !!! | CCCAATTTCTTTTTTAGGGC+AGG | - | chr1_3:45463697-45463716 | None:intergenic | 40.0% |
| AATCAGGGAAACAAAGTCCA+TGG | + | chr1_3:45463752-45463771 | Msa0120530:intron | 40.0% | |
| AGAAAGCCATAAGGTTCAGT+CGG | - | chr1_3:45464244-45464263 | None:intergenic | 40.0% | |
| AGTCTTTGCAGAAAGCCATA+AGG | - | chr1_3:45464253-45464272 | None:intergenic | 40.0% | |
| ATTCAAGCCTGATACACCAA+TGG | + | chr1_3:45464292-45464311 | Msa0120530:CDS | 40.0% | |
| GCTGTTATTGTAACAGCCAT+TGG | - | chr1_3:45464311-45464330 | None:intergenic | 40.0% | |
| CAGAAATTGATGTCCTGGTA+TGG | + | chr1_3:45464739-45464758 | Msa0120530:three_prime_UTR | 40.0% | |
| GTTGTGTCCGTATTGGACAT+GGG | - | chr1_3:45462285-45462304 | None:intergenic | 45.0% | |
| TGTTGTGTCCGTATTGGACA+TGG | - | chr1_3:45462286-45462305 | None:intergenic | 45.0% | |
| TGACTTCAACAAGGCTAAGC+AGG | - | chr1_3:45462463-45462482 | None:intergenic | 45.0% | |
| TGCCTATGAAGCACAAACAC+CGG | + | chr1_3:45462509-45462528 | Msa0120530:intron | 45.0% | |
| !! | TGAGAGAAAGTTGGTAGCTC+TGG | - | chr1_3:45462762-45462781 | None:intergenic | 45.0% |
| AGAAATTGGGACTCAGGAGA+TGG | + | chr1_3:45463707-45463726 | Msa0120530:intron | 45.0% | |
| AGGTCAAGATGAAAGGCTGT+TGG | + | chr1_3:45463847-45463866 | Msa0120530:intron | 45.0% | |
| ATTGTCGCTGCTACCACTTT+CGG | - | chr1_3:45464155-45464174 | None:intergenic | 45.0% | |
| !! | TCAGTACCGACTGAACCTTA+TGG | + | chr1_3:45464235-45464254 | Msa0120530:CDS | 45.0% |
| TCTGCAAAGACTTCAACGCA+CGG | + | chr1_3:45464261-45464280 | Msa0120530:CDS | 45.0% | |
| GTAACAGCCATTGGTGTATC+AGG | - | chr1_3:45464302-45464321 | None:intergenic | 45.0% | |
| TTAAATCTCCTTCCGTCTCG+TGG | + | chr1_3:45464360-45464379 | Msa0120530:CDS | 45.0% | |
| TTTCTTCAGGTACCACGAGA+CGG | - | chr1_3:45464375-45464394 | None:intergenic | 45.0% | |
| !! | AAAGCTGCGGGTATCGAATT+GGG | + | chr1_3:45464392-45464411 | Msa0120530:CDS | 45.0% |
| ACAGTCTGATCCTTACTTGC+AGG | + | chr1_3:45464487-45464506 | Msa0120530:CDS | 45.0% | |
| CAGTCTGATCCTTACTTGCA+GGG | + | chr1_3:45464488-45464507 | Msa0120530:CDS | 45.0% | |
| GCTCCTAGCTGTACCAATAA+TGG | - | chr1_3:45464540-45464559 | None:intergenic | 45.0% | |
| TATTGGTACAGCTAGGAGCA+TGG | + | chr1_3:45464541-45464560 | Msa0120530:CDS | 45.0% | |
| ! | ATTGGTACAGCTAGGAGCAT+GGG | + | chr1_3:45464542-45464561 | Msa0120530:CDS | 45.0% |
| CTACTTGGCCACTCACAAAA+TGG | + | chr1_3:45464678-45464697 | Msa0120530:three_prime_UTR | 45.0% | |
| ! | GCACAGAACCATTTTGTGAG+TGG | - | chr1_3:45464689-45464708 | None:intergenic | 45.0% |
| AGTGGCAGAAATTGATGTCC+TGG | + | chr1_3:45464734-45464753 | Msa0120530:three_prime_UTR | 45.0% | |
| GACGAGTCCCATGTCCAATA+CGG | + | chr1_3:45462275-45462294 | Msa0120530:intron | 50.0% | |
| !! | TGTCGGTGTTGTGTCCGTAT+TGG | - | chr1_3:45462292-45462311 | None:intergenic | 50.0% |
| CAACAAGGCTAAGCAGGCAA+AGG | - | chr1_3:45462457-45462476 | None:intergenic | 50.0% | |
| GTCCGGTGTTTGTGCTTCAT+AGG | - | chr1_3:45462514-45462533 | None:intergenic | 50.0% | |
| ! | ACGTGTCGTGGTGTCAGATA+CGG | + | chr1_3:45462600-45462619 | Msa0120530:intron | 50.0% |
| CTGCTAAGTTAACACTGGCG+TGG | + | chr1_3:45463437-45463456 | Msa0120530:intron | 50.0% | |
| !! | TCGTTGATGGCTGGAAGTAG+CGG | - | chr1_3:45464124-45464143 | None:intergenic | 50.0% |
| TTCGGAACGCTCATCGTTGA+TGG | - | chr1_3:45464137-45464156 | None:intergenic | 50.0% | |
| AACGATGAGCGTTCCGAAAG+TGG | + | chr1_3:45464139-45464158 | Msa0120530:CDS | 50.0% | |
| AAGTGGTAGCAGCGACAATC+CGG | + | chr1_3:45464156-45464175 | Msa0120530:CDS | 50.0% | |
| GTGGTACCTGAAGAAAGCTG+CGG | + | chr1_3:45464379-45464398 | Msa0120530:CDS | 50.0% | |
| TGGTACCTGAAGAAAGCTGC+GGG | + | chr1_3:45464380-45464399 | Msa0120530:CDS | 50.0% | |
| !! | GAAAGCTGCGGGTATCGAAT+TGG | + | chr1_3:45464391-45464410 | Msa0120530:CDS | 50.0% |
| ATACACGTGCCGAAGTGACA+GGG | - | chr1_3:45464450-45464469 | None:intergenic | 50.0% | |
| GCACGTGTATGAGATCGCTA+AGG | + | chr1_3:45464460-45464479 | Msa0120530:CDS | 50.0% | |
| AGTGGCATACCCTGCAAGTA+AGG | - | chr1_3:45464500-45464519 | None:intergenic | 50.0% | |
| !! | GAACGCTCATCGTTGATGGC+TGG | - | chr1_3:45464133-45464152 | None:intergenic | 55.0% |
| ATCCGGTTGAGAGTTCCAGC+TGG | + | chr1_3:45464173-45464192 | Msa0120530:CDS | 55.0% | |
| CTCCAGCTGGAACTCTCAAC+CGG | - | chr1_3:45464178-45464197 | None:intergenic | 55.0% | |
| TTCAGGTACCACGAGACGGA+AGG | - | chr1_3:45464371-45464390 | None:intergenic | 55.0% | |
| CGATACCCGCAGCTTTCTTC+AGG | - | chr1_3:45464388-45464407 | None:intergenic | 55.0% | |
| !! | GAATTGGGAAGTACCCGTCC+CGG | + | chr1_3:45464407-45464426 | Msa0120530:CDS | 55.0% |
| CATACACGTGCCGAAGTGAC+AGG | - | chr1_3:45464451-45464470 | None:intergenic | 55.0% | |
| AGAGTCGGTGCAACGTGCTG+CGG | - | chr1_3:45462245-45462264 | None:intergenic | 60.0% | |
| CGGAGACACACGACACGACA+CGG | - | chr1_3:45462373-45462392 | None:intergenic | 60.0% | |
| CGGTTGAGAGTTCCAGCTGG+AGG | + | chr1_3:45464176-45464195 | Msa0120530:CDS | 60.0% | |
| !! | AGTCGGTACTGACCTAGCGC+AGG | - | chr1_3:45464227-45464246 | None:intergenic | 60.0% |
| ! | TCCAGCTGGAGGAGCACGTC+CGG | + | chr1_3:45464187-45464206 | Msa0120530:CDS | 65.0% |
| TGACCTAGCGCAGGTCCCAC+AGG | - | chr1_3:45464218-45464237 | None:intergenic | 65.0% | |
| TGGCGGTCACATGACCGGGA+CGG | - | chr1_3:45464424-45464443 | None:intergenic | 65.0% | |
| ! | GAGGTGGCGGTCACATGACC+GGG | - | chr1_3:45464428-45464447 | None:intergenic | 65.0% |
| ! | GGAGGTGGCGGTCACATGAC+CGG | - | chr1_3:45464429-45464448 | None:intergenic | 65.0% |
| CCGAAGTGACAGGGAGGTGG+CGG | - | chr1_3:45464441-45464460 | None:intergenic | 65.0% | |
| ! | CCGCCACCTCCCTGTCACTT+CGG | + | chr1_3:45464438-45464457 | Msa0120530:CDS | 65.0% |
| GTGCCGAAGTGACAGGGAGG+TGG | - | chr1_3:45464444-45464463 | None:intergenic | 65.0% | |
| CACGTGCCGAAGTGACAGGG+AGG | - | chr1_3:45464447-45464466 | None:intergenic | 65.0% | |
| GTCGGTGCAACGTGCTGCGG+AGG | - | chr1_3:45462242-45462261 | None:intergenic | 70.0% | |
| CCTAGCGCAGGTCCCACAGG+AGG | - | chr1_3:45464215-45464234 | None:intergenic | 70.0% | |
| CCTCCTGTGGGACCTGCGCT+AGG | + | chr1_3:45464212-45464231 | Msa0120530:CDS | 70.0% | |
| GGCGGTCACATGACCGGGAC+GGG | - | chr1_3:45464423-45464442 | None:intergenic | 70.0% | |
| GCCGGACGTGCTCCTCCAGC+TGG | - | chr1_3:45464191-45464210 | None:intergenic | 75.0% | |
| AGCACGTCCGGCGCCTCCTG+TGG | + | chr1_3:45464199-45464218 | Msa0120530:CDS | 75.0% | |
| GCACGTCCGGCGCCTCCTGT+GGG | + | chr1_3:45464200-45464219 | Msa0120530:CDS | 75.0% | |
| ! | GCAGGTCCCACAGGAGGCGC+CGG | - | chr1_3:45464209-45464228 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 45461791 | 45464938 | 45461791 | ID=Msa0120530;Name=Msa0120530 |
| chr1_3 | mRNA | 45461791 | 45464938 | 45461791 | ID=Msa0120530-mRNA-1;Parent=Msa0120530;Name=Msa0120530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=300|0.33|0.75|0.75|0|0.25|4|346|163 |
| chr1_3 | exon | 45461791 | 45461961 | 45461791 | ID=Msa0120530-mRNA-1:exon:13590;Parent=Msa0120530-mRNA-1 |
| chr1_3 | exon | 45462046 | 45462094 | 45462046 | ID=Msa0120530-mRNA-1:exon:13591;Parent=Msa0120530-mRNA-1 |
| chr1_3 | exon | 45463065 | 45463162 | 45463065 | ID=Msa0120530-mRNA-1:exon:13592;Parent=Msa0120530-mRNA-1 |
| chr1_3 | exon | 45464119 | 45464938 | 45464119 | ID=Msa0120530-mRNA-1:exon:13593;Parent=Msa0120530-mRNA-1 |
| chr1_3 | five_prime_UTR | 45461791 | 45461961 | 45461791 | ID=Msa0120530-mRNA-1:five_prime_utr;Parent=Msa0120530-mRNA-1 |
| chr1_3 | five_prime_UTR | 45462046 | 45462094 | 45462046 | ID=Msa0120530-mRNA-1:five_prime_utr;Parent=Msa0120530-mRNA-1 |
| chr1_3 | five_prime_UTR | 45463065 | 45463144 | 45463065 | ID=Msa0120530-mRNA-1:five_prime_utr;Parent=Msa0120530-mRNA-1 |
| chr1_3 | CDS | 45463145 | 45463162 | 45463145 | ID=Msa0120530-mRNA-1:cds;Parent=Msa0120530-mRNA-1 |
| chr1_3 | CDS | 45464119 | 45464592 | 45464119 | ID=Msa0120530-mRNA-1:cds;Parent=Msa0120530-mRNA-1 |
| chr1_3 | three_prime_UTR | 45464593 | 45464938 | 45464593 | ID=Msa0120530-mRNA-1:three_prime_utr;Parent=Msa0120530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
