Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043130 | XP_013459798.1 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.95e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043130 | sp|Q94JQ4|RIDA_ARATH | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.13e-80 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043130 | I3SK73 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.41e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1043130 | -0.856895 | 2.360137e-62 | -8.615850e-47 |
| Msa0044090 | Msa1043130 | -0.826104 | 3.257273e-54 | -8.615850e-47 |
| Msa0101500 | Msa1043130 | 0.803118 | 4.060681e-49 | -8.615850e-47 |
| Msa0613120 | Msa1043130 | -0.802428 | 5.637946e-49 | -8.615850e-47 |
| Msa0637600 | Msa1043130 | -0.805879 | 1.078804e-49 | -8.615850e-47 |
| Msa0637900 | Msa1043130 | -0.802755 | 4.825620e-49 | -8.615850e-47 |
| Msa0679020 | Msa1043130 | -0.812069 | 5.102426e-51 | -8.615850e-47 |
| Msa0679030 | Msa1043130 | -0.826718 | 2.326284e-54 | -8.615850e-47 |
| Msa0688070 | Msa1043130 | -0.800360 | 1.495110e-48 | -8.615850e-47 |
| Msa0697990 | Msa1043130 | 0.824642 | 7.226423e-54 | -8.615850e-47 |
| Msa0738340 | Msa1043130 | -0.806498 | 7.988459e-50 | -8.615850e-47 |
| Msa0762970 | Msa1043130 | -0.811499 | 6.789577e-51 | -8.615850e-47 |
| Msa0763890 | Msa1043130 | -0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0797770 | Msa1043130 | -0.812181 | 4.824284e-51 | -8.615850e-47 |
| Msa0817460 | Msa1043130 | -0.821768 | 3.388060e-53 | -8.615850e-47 |
| Msa0832340 | Msa1043130 | -0.819598 | 1.067681e-52 | -8.615850e-47 |
| Msa0835230 | Msa1043130 | -0.821527 | 3.850115e-53 | -8.615850e-47 |
| Msa0140500 | Msa1043130 | 0.804758 | 1.852599e-49 | -8.615850e-47 |
| Msa0151180 | Msa1043130 | -0.803893 | 2.804721e-49 | -8.615850e-47 |
| Msa0224390 | Msa1043130 | -0.803867 | 2.839548e-49 | -8.615850e-47 |
| Msa0224420 | Msa1043130 | -0.817084 | 3.961225e-52 | -8.615850e-47 |
| Msa0224780 | Msa1043130 | -0.813456 | 2.536002e-51 | -8.615850e-47 |
| Msa0225110 | Msa1043130 | -0.865559 | 5.407854e-65 | -8.615850e-47 |
| Msa0381610 | Msa1043130 | 0.818730 | 1.682777e-52 | -8.615850e-47 |
| Msa0433410 | Msa1043130 | 0.813109 | 3.022542e-51 | -8.615850e-47 |
| Msa0436760 | Msa1043130 | -0.816579 | 5.142231e-52 | -8.615850e-47 |
| Msa0455760 | Msa1043130 | -0.801707 | 7.928907e-49 | -8.615850e-47 |
| Msa0464100 | Msa1043130 | -0.806403 | 8.368530e-50 | -8.615850e-47 |
| Msa1036610 | Msa1043130 | -0.813555 | 2.412901e-51 | -8.615850e-47 |
| Msa1039710 | Msa1043130 | 0.801108 | 1.052000e-48 | -8.615850e-47 |
| Msa1043130 | Msa1162780 | -0.816189 | 6.288077e-52 | -8.615850e-47 |
| Msa1043130 | Msa1163900 | 0.805877 | 1.079462e-49 | -8.615850e-47 |
| Msa1043130 | Msa1183100 | 0.812030 | 5.204618e-51 | -8.615850e-47 |
| Msa1043130 | Msa1224480 | -0.803008 | 4.278168e-49 | -8.615850e-47 |
| Msa1043130 | Msa1292570 | -0.803980 | 2.690477e-49 | -8.615850e-47 |
| Msa1043130 | Msa1299960 | -0.808013 | 3.814407e-50 | -8.615850e-47 |
| Msa1043130 | Msa1308870 | -0.802754 | 4.828510e-49 | -8.615850e-47 |
| Msa1043130 | Msa1312500 | -0.809388 | 1.939771e-50 | -8.615850e-47 |
| Msa1043130 | Msa1315600 | -0.804729 | 1.877948e-49 | -8.615850e-47 |
| Msa1043130 | Msa1325860 | 0.813442 | 2.554808e-51 | -8.615850e-47 |
| Msa1043130 | Msa1352280 | 0.887685 | 1.147927e-72 | -8.615850e-47 |
| Msa1043130 | Msa1374470 | -0.853536 | 2.238934e-61 | -8.615850e-47 |
| Msa1043130 | Msa1374710 | -0.800500 | 1.400218e-48 | -8.615850e-47 |
| Msa1043130 | Msa1445390 | 0.804265 | 2.346771e-49 | -8.615850e-47 |
| Msa1043130 | Msa1452710 | -0.825828 | 3.787744e-54 | -8.615850e-47 |
| Msa1043130 | Msa1458680 | -0.815545 | 8.751413e-52 | -8.615850e-47 |
| Msa0266200 | Msa1043130 | -0.862231 | 5.868986e-64 | -8.615850e-47 |
| Msa0267370 | Msa1043130 | -0.807108 | 5.938047e-50 | -8.615850e-47 |
| Msa0287780 | Msa1043130 | -0.863161 | 3.032294e-64 | -8.615850e-47 |
| Msa0287870 | Msa1043130 | -0.815852 | 7.474790e-52 | -8.615850e-47 |
| Msa0290870 | Msa1043130 | -0.808391 | 3.168961e-50 | -8.615850e-47 |
| Msa0310600 | Msa1043130 | -0.804066 | 2.581569e-49 | -8.615850e-47 |
| Msa0363790 | Msa1043130 | -0.809610 | 1.737547e-50 | -8.615850e-47 |
| Msa0484720 | Msa1043130 | -0.814442 | 1.537728e-51 | -8.615850e-47 |
| Msa0546870 | Msa1043130 | 0.814804 | 1.278137e-51 | -8.615850e-47 |
| Msa0568680 | Msa1043130 | -0.805345 | 1.396406e-49 | -8.615850e-47 |
| Msa0571130 | Msa1043130 | -0.821327 | 4.282546e-53 | -8.615850e-47 |
| Msa0844490 | Msa1043130 | -0.804182 | 2.442861e-49 | -8.615850e-47 |
| Msa0933100 | Msa1043130 | -0.811291 | 7.535919e-51 | -8.615850e-47 |
| Msa0936390 | Msa1043130 | -0.811205 | 7.865926e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043130 | MtrunA17_Chr3g0098941 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.71e-137 | 380 |
| Msa1043130 | MtrunA17_Chr5g0444131 | 73.298 | 191 | 48 | 3 | 1 | 188 | 1 | 191 | 4.15e-96 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043130 | AT3G20390.1 | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.20e-81 | 239 |
| Msa1043130 | AT3G20390.2 | 65.079 | 189 | 60 | 3 | 3 | 188 | 70 | 255 | 4.09e-80 | 239 |
Find 65 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCGGCGCGCTTCA+TGG | 0.245173 | 7_2:+988191 | Msa1043130:CDS |
| GCTTCATGGGCCGCCGGAAT+CGG | 0.288598 | 7_2:+988205 | Msa1043130:CDS |
| TAATTGCTCTTGTTTGTGTA+TGG | 0.330572 | 7_2:+991330 | Msa1043130:three_prime_UTR |
| CTATTTGTCTCAGGTGTCCT+TGG | 0.335818 | 7_2:+989595 | Msa1043130:CDS |
| TTCCAGGTTGGCTGACTTGA+AGG | 0.345750 | 7_2:+990349 | Msa1043130:intron |
| TATGCACTCAATTTCAATCT+TGG | 0.362374 | 7_2:-991041 | None:intergenic |
| TGGAGAACGGCGGCGTTGAT+TGG | 0.378595 | 7_2:-988175 | None:intergenic |
| AACGGAGACTCCGCCGATTC+CGG | 0.378739 | 7_2:-988218 | None:intergenic |
| GAAAAGGCCCCAGCAGCATT+AGG | 0.400404 | 7_2:+989538 | Msa1043130:CDS |
| GCTTTGATTGCTTGAGAATA+CGG | 0.405845 | 7_2:-989562 | None:intergenic |
| TCTCCACCGGCGCGCTTCAT+GGG | 0.434032 | 7_2:+988192 | Msa1043130:CDS |
| CCAACTACCGGTGTTTACTT+TGG | 0.435201 | 7_2:+991155 | Msa1043130:three_prime_UTR |
| ATCGGCGGAGTCTCCGTTGC+CGG | 0.444540 | 7_2:+988223 | Msa1043130:CDS |
| GATAGTTCTATCGTAAAATC+AGG | 0.445373 | 7_2:+991100 | Msa1043130:three_prime_UTR |
| CTTAACAACTGATGCATAGC+TGG | 0.447171 | 7_2:-990235 | None:intergenic |
| TGAGACAAATAGAAGGTTGT+TGG | 0.447747 | 7_2:-989584 | None:intergenic |
| TGAGCGCAACATGGCAGTGC+CGG | 0.462430 | 7_2:-988242 | None:intergenic |
| GAATACGGTCCTAATGCTGC+TGG | 0.463844 | 7_2:-989547 | None:intergenic |
| AACAACCTTCTATTTGTCTC+AGG | 0.469075 | 7_2:+989586 | Msa1043130:CDS |
| ACTTGATACGTCGCACGAGC+TGG | 0.469228 | 7_2:-990998 | None:intergenic |
| CGAATCTAGTGAGAAAGAAA+TGG | 0.473075 | 7_2:+988117 | Msa1043130:exon |
| GTAGTTGTTGAGTTTAACTT+TGG | 0.475445 | 7_2:-988031 | None:intergenic |
| AAAATCAGGTCAAATAATAC+AGG | 0.481895 | 7_2:+991114 | Msa1043130:three_prime_UTR |
| GCACGAGCTGGGGCAGGTGA+AGG | 0.482738 | 7_2:-990986 | None:intergenic |
| CTTGATACGTCGCACGAGCT+GGG | 0.495903 | 7_2:-990997 | None:intergenic |
| CGGCCCATGAAGCGCGCCGG+TGG | 0.502790 | 7_2:-988195 | None:intergenic |
| TCAACGCCGCCGTTCTCCAC+CGG | 0.508384 | 7_2:+988179 | Msa1043130:CDS |
| CTCAGACACGAGGCAGTTCA+CGG | 0.509072 | 7_2:-988094 | None:intergenic |
| AGAACGGCGGCGTTGATTGG+TGG | 0.520088 | 7_2:-988172 | None:intergenic |
| CCAAAGTAAACACCGGTAGT+TGG | 0.522476 | 7_2:-991155 | None:intergenic |
| CGGCGCGCTTCATGGGCCGC+CGG | 0.523403 | 7_2:+988199 | Msa1043130:CDS |
| TACGTCGCACGAGCTGGGGC+AGG | 0.534632 | 7_2:-990992 | None:intergenic |
| CAACATGGCAGTGCCGGCAA+CGG | 0.534933 | 7_2:-988236 | None:intergenic |
| TGTTGAAGATCAGACTGAGC+AGG | 0.545352 | 7_2:+989768 | Msa1043130:CDS |
| CGGCGGCCCATGAAGCGCGC+CGG | 0.548624 | 7_2:-988198 | None:intergenic |
| AATACGGTCCTAATGCTGCT+GGG | 0.551619 | 7_2:-989546 | None:intergenic |
| GGACACCTGAGACAAATAGA+AGG | 0.553587 | 7_2:-989591 | None:intergenic |
| TCATGGGCCGCCGGAATCGG+CGG | 0.556526 | 7_2:+988208 | Msa1043130:CDS |
| TCAAGTAGCTGCCTTGCCGT+TGG | 0.560196 | 7_2:+991015 | Msa1043130:CDS |
| GGAAGCTGTTCAGACAGAAA+AGG | 0.561997 | 7_2:+989522 | Msa1043130:CDS |
| TGAAGCGCGCCGGTGGAGAA+CGG | 0.562145 | 7_2:-988188 | None:intergenic |
| ATTTCAATCTTGGCATCCAA+CGG | 0.567118 | 7_2:-991031 | None:intergenic |
| ATCAGTTCACATCCAACTAC+CGG | 0.570009 | 7_2:+991143 | Msa1043130:three_prime_UTR |
| GGAAAGGCTTAAGCAAAGGA+AGG | 0.586489 | 7_2:-988287 | None:intergenic |
| GGAGACTCCGCCGATTCCGG+CGG | 0.590150 | 7_2:-988215 | None:intergenic |
| CAGTGGAAAGGCTTAAGCAA+AGG | 0.596253 | 7_2:-988291 | None:intergenic |
| CGGCGTTGATTGGTGGAATG+TGG | 0.604191 | 7_2:-988165 | None:intergenic |
| TGGCGTCATGGTGTGCAGCA+AGG | 0.608058 | 7_2:+988137 | Msa1043130:CDS |
| TGTCCTTGGTCTTGTTCCCG+AGG | 0.614992 | 7_2:+989609 | Msa1043130:CDS |
| GTGAGAAAGAAATGGCGTCA+TGG | 0.617536 | 7_2:+988125 | Msa1043130:exon |
| GTTGATTGGTGGAATGTGGA+AGG | 0.619041 | 7_2:-988161 | None:intergenic |
| ATACGGTCCTAATGCTGCTG+GGG | 0.621636 | 7_2:-989545 | None:intergenic |
| GCAGACAGGGAAGTTTGTCT+CGG | 0.622133 | 7_2:+989741 | Msa1043130:intron |
| AATCTTGGCATCCAACGGCA+AGG | 0.623839 | 7_2:-991026 | None:intergenic |
| TGGGAACTTACGGGTATCAG+TGG | 0.629631 | 7_2:-988308 | None:intergenic |
| TTGATACGTCGCACGAGCTG+GGG | 0.630943 | 7_2:-990996 | None:intergenic |
| GAAAGGCTTAAGCAAAGGAA+GGG | 0.642611 | 7_2:-988286 | None:intergenic |
| AGAAGAAGATGAGCGCAACA+TGG | 0.649681 | 7_2:-988251 | None:intergenic |
| AGCGCGCCGGTGGAGAACGG+CGG | 0.660633 | 7_2:-988185 | None:intergenic |
| ACTTACGGGTATCAGTGGAA+AGG | 0.665039 | 7_2:-988303 | None:intergenic |
| GAAAAGACCAAAGTAAACAC+CGG | 0.666349 | 7_2:-991162 | None:intergenic |
| ACTAGATTCGCTCAGACACG+AGG | 0.676893 | 7_2:-988104 | None:intergenic |
| GGGGAGATCCTGAAATCTGG+GGG | 0.679110 | 7_2:+990210 | Msa1043130:CDS |
| TCAGGTCAAATAATACAGGA+CGG | 0.679494 | 7_2:+991118 | Msa1043130:three_prime_UTR |
| AAACCTCGGGAACAAGACCA+AGG | 0.710925 | 7_2:-989612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATAATTAACAATAAA+GGG | - | chr7_2:990528-990547 | None:intergenic | 10.0% |
| !! | ATTGAAATAATTAACAATAA+AGG | - | chr7_2:990529-990548 | None:intergenic | 10.0% |
| !! | ATTATTTCAATCAAAATAAT+TGG | + | chr7_2:990538-990557 | Msa1043130:intron | 10.0% |
| !!! | ATTTTTATATGAATTAGCTT+TGG | + | chr7_2:988774-988793 | Msa1043130:intron | 15.0% |
| !! | TCATACTTAAACAAAAAATT+TGG | + | chr7_2:988854-988873 | Msa1043130:intron | 15.0% |
| !! | CATACTTAAACAAAAAATTT+GGG | + | chr7_2:988855-988874 | Msa1043130:intron | 15.0% |
| !! | ATACTTAAACAAAAAATTTG+GGG | + | chr7_2:988856-988875 | Msa1043130:intron | 15.0% |
| !!! | TAAACAATACTTTTTCAAAT+TGG | + | chr7_2:989366-989385 | Msa1043130:intron | 15.0% |
| !!! | AAAGTTGATATGATTTATAA+TGG | + | chr7_2:990023-990042 | Msa1043130:intron | 15.0% |
| !!! | TCATATTCTGTAATTTTAAA+AGG | - | chr7_2:990568-990587 | None:intergenic | 15.0% |
| !! | AATGTATATAAGAAATTCAT+TGG | - | chr7_2:990628-990647 | None:intergenic | 15.0% |
| !! | AAGTTTATATTTGTATGAAG+TGG | + | chr7_2:989021-989040 | Msa1043130:intron | 20.0% |
| !! | AAAATGTTGCTAATGTATAA+TGG | + | chr7_2:989060-989079 | Msa1043130:intron | 20.0% |
| !!! | TTGTTTTGTCAATTTAGTAT+AGG | + | chr7_2:989109-989128 | Msa1043130:intron | 20.0% |
| !! | CCAGTAATAATTTGAAAAAA+TGG | - | chr7_2:989254-989273 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCAAATTATTAC+TGG | + | chr7_2:989251-989270 | Msa1043130:intron | 20.0% |
| !! | ATATAAATATGCTGATAGAT+TGG | - | chr7_2:989652-989671 | None:intergenic | 20.0% |
| !! | TAACAATCATTCAAAGATTT+AGG | - | chr7_2:989948-989967 | None:intergenic | 20.0% |
| !! | TTTAAACAATTACATATTGC+AGG | + | chr7_2:990173-990192 | Msa1043130:intron | 20.0% |
| !! | AAAGAATGTAAACAATTTCA+AGG | - | chr7_2:990438-990457 | None:intergenic | 20.0% |
| !!! | ATTCTGTAATTTTAAAAGGA+TGG | - | chr7_2:990564-990583 | None:intergenic | 20.0% |
| !!! | GTAAAAGATTTTCAATCTAA+AGG | - | chr7_2:990727-990746 | None:intergenic | 20.0% |
| !! | GTATACGTTATTTATGTAAA+AGG | + | chr7_2:990794-990813 | Msa1043130:intron | 20.0% |
| !!! | TTCACTTTTAGTTGAATTAA+TGG | + | chr7_2:991078-991097 | Msa1043130:three_prime_UTR | 20.0% |
| ! | AACATGTCAAAACAATTCTA+CGG | - | chr7_2:988503-988522 | None:intergenic | 25.0% |
| ! | GATAACAAAATGCTTATAAG+TGG | - | chr7_2:988710-988729 | None:intergenic | 25.0% |
| ! | TTGTTTAAGTATGAACTTGT+TGG | - | chr7_2:988848-988867 | None:intergenic | 25.0% |
| !!! | ACAAGCAACATTTTTTGTAA+TGG | + | chr7_2:988894-988913 | Msa1043130:intron | 25.0% |
| ! | AAGAATCCTTCAAACAAAAA+AGG | - | chr7_2:988964-988983 | None:intergenic | 25.0% |
| ! | CTAATGTATAATGGTTATTG+CGG | + | chr7_2:989069-989088 | Msa1043130:intron | 25.0% |
| ! | AAAACAAATCACAATTGTGA+AGG | - | chr7_2:989096-989115 | None:intergenic | 25.0% |
| !!! | ATCACTTTCTGATTGATTTT+AGG | + | chr7_2:989490-989509 | Msa1043130:intron | 25.0% |
| !!! | TCACTTTCTGATTGATTTTA+GGG | + | chr7_2:989491-989510 | Msa1043130:intron | 25.0% |
| ! | AACACTAAATTATCAAACCT+CGG | - | chr7_2:989629-989648 | None:intergenic | 25.0% |
| ! | CTTTGATTGTCCAAAATTAT+GGG | + | chr7_2:989890-989909 | Msa1043130:intron | 25.0% |
| ! | TATTTGTTCTTTCCTTAGTT+TGG | + | chr7_2:990277-990296 | Msa1043130:intron | 25.0% |
| !! | TATGCTAAATGTAAGTTTTG+TGG | + | chr7_2:990395-990414 | Msa1043130:intron | 25.0% |
| ! | ACAAGAAATCAGGTAATATA+TGG | - | chr7_2:990689-990708 | None:intergenic | 25.0% |
| !! | AAGATTTTCGTCTATTTATG+TGG | + | chr7_2:990916-990935 | Msa1043130:intron | 25.0% |
| !! | AGATTTTCGTCTATTTATGT+GGG | + | chr7_2:990917-990936 | Msa1043130:intron | 25.0% |
| ! | TACTTCTAATCATTTACTTG+TGG | + | chr7_2:990943-990962 | Msa1043130:intron | 25.0% |
| ! | AAAATCAGGTCAAATAATAC+AGG | + | chr7_2:991114-991133 | Msa1043130:three_prime_UTR | 25.0% |
| ! | CAATTAGAACAAAAATCTGT+GGG | - | chr7_2:991316-991335 | None:intergenic | 25.0% |
| ! | GTAGTTGTTGAGTTTAACTT+TGG | - | chr7_2:988034-988053 | None:intergenic | 30.0% |
| AGAGAAGAAAGTGAAATGAT+GGG | - | chr7_2:988330-988349 | None:intergenic | 30.0% | |
| ! | TACATGAAATTCTGAGAAAG+TGG | - | chr7_2:988355-988374 | None:intergenic | 30.0% |
| CCAAATGGTATATTAATCAG+TGG | - | chr7_2:988404-988423 | None:intergenic | 30.0% | |
| ! | CCACTGATTAATATACCATT+TGG | + | chr7_2:988401-988420 | Msa1043130:intron | 30.0% |
| ! | TAACATTTTCACAGACCAAA+TGG | - | chr7_2:988419-988438 | None:intergenic | 30.0% |
| ATCTAATCTTAGTGCATGTT+TGG | + | chr7_2:988448-988467 | Msa1043130:intron | 30.0% | |
| !! | TGCATGTTTGGTTTCAATTT+TGG | + | chr7_2:988460-988479 | Msa1043130:intron | 30.0% |
| ! | CAATTCTACGGAATCAATTT+TGG | - | chr7_2:988491-988510 | None:intergenic | 30.0% |
| TTTGACATGTTCAATTGCTT+CGG | + | chr7_2:988512-988531 | Msa1043130:intron | 30.0% | |
| AAAGTGAAGTGATTTATGTC+TGG | - | chr7_2:988658-988677 | None:intergenic | 30.0% | |
| ATCACTGTGTTTAAATTGAC+TGG | + | chr7_2:988727-988746 | Msa1043130:intron | 30.0% | |
| !!! | TATGGACCTTTTTTGTTTGA+AGG | + | chr7_2:988955-988974 | Msa1043130:intron | 30.0% |
| ! | AGTTTTGCACTAGGAAATTT+TGG | + | chr7_2:988995-989014 | Msa1043130:intron | 30.0% |
| ! | AACATTTTCACTGCAGTTAA+AGG | - | chr7_2:989048-989067 | None:intergenic | 30.0% |
| !! | TTTCAACCTAAAGTGTTGAT+CGG | - | chr7_2:989173-989192 | None:intergenic | 30.0% |
| AAATTGGTATAGAGCTACAA+AGG | + | chr7_2:989382-989401 | Msa1043130:intron | 30.0% | |
| !! | ATTGATTTTAGGGATCAACA+AGG | + | chr7_2:989501-989520 | Msa1043130:intron | 30.0% |
| ACACTAAATTATCAAACCTC+GGG | - | chr7_2:989628-989647 | None:intergenic | 30.0% | |
| ! | AGAACAAAACACTGATTACT+AGG | - | chr7_2:989716-989735 | None:intergenic | 30.0% |
| GCTTTGATTGTCCAAAATTA+TGG | + | chr7_2:989889-989908 | Msa1043130:intron | 30.0% | |
| !! | TTGGTGTTGTATTTCCATAA+TGG | + | chr7_2:990123-990142 | Msa1043130:intron | 30.0% |
| AATCATTAAGTGCACCATTA+TGG | - | chr7_2:990140-990159 | None:intergenic | 30.0% | |
| TCAAATACAAAGCCAAACTA+AGG | - | chr7_2:990292-990311 | None:intergenic | 30.0% | |
| TAACATCATTCATTTCTTCC+AGG | + | chr7_2:990333-990352 | Msa1043130:intron | 30.0% | |
| TTGCGCTGTAAAAGTTAATT+CGG | + | chr7_2:990651-990670 | Msa1043130:intron | 30.0% | |
| TAGCTATAGTACAAGAAATC+AGG | - | chr7_2:990699-990718 | None:intergenic | 30.0% | |
| GATTGAAGATTAATCTTCGA+AGG | + | chr7_2:990757-990776 | Msa1043130:intron | 30.0% | |
| TCATTTACTTGTGGTTTGAA+TGG | + | chr7_2:990952-990971 | Msa1043130:intron | 30.0% | |
| TATGCACTCAATTTCAATCT+TGG | - | chr7_2:991044-991063 | None:intergenic | 30.0% | |
| ! | GATAGTTCTATCGTAAAATC+AGG | + | chr7_2:991100-991119 | Msa1043130:three_prime_UTR | 30.0% |
| GCAATTAGAACAAAAATCTG+TGG | - | chr7_2:991317-991336 | None:intergenic | 30.0% | |
| ! | TAATTGCTCTTGTTTGTGTA+TGG | + | chr7_2:991330-991349 | Msa1043130:three_prime_UTR | 30.0% |
| CGAATCTAGTGAGAAAGAAA+TGG | + | chr7_2:988117-988136 | Msa1043130:exon | 35.0% | |
| ! | AGTGAAATGATGGGAACTTA+CGG | - | chr7_2:988321-988340 | None:intergenic | 35.0% |
| GAGAGAAGAAAGTGAAATGA+TGG | - | chr7_2:988331-988350 | None:intergenic | 35.0% | |
| TTCTCATTGATGTACAATGC+AGG | + | chr7_2:988928-988947 | Msa1043130:intron | 35.0% | |
| TCTCATTGATGTACAATGCA+GGG | + | chr7_2:988929-988948 | Msa1043130:intron | 35.0% | |
| ! | ATGTACAATGCAGGGTTTTA+TGG | + | chr7_2:988937-988956 | Msa1043130:intron | 35.0% |
| !!! | TTCCTATCTAGTTTTGCACT+AGG | + | chr7_2:988986-989005 | Msa1043130:intron | 35.0% |
| TTCCTAGTGCAAAACTAGAT+AGG | - | chr7_2:988991-989010 | None:intergenic | 35.0% | |
| GCTTTGATTGCTTGAGAATA+CGG | - | chr7_2:989565-989584 | None:intergenic | 35.0% | |
| TGAGACAAATAGAAGGTTGT+TGG | - | chr7_2:989587-989606 | None:intergenic | 35.0% | |
| AACAACCTTCTATTTGTCTC+AGG | + | chr7_2:989586-989605 | Msa1043130:CDS | 35.0% | |
| ! | TTTTGTTCTCTAATGCAGAC+AGG | + | chr7_2:989727-989746 | Msa1043130:intron | 35.0% |
| TTTGTTCTCTAATGCAGACA+GGG | + | chr7_2:989728-989747 | Msa1043130:intron | 35.0% | |
| ATAGCCTTTCATGTTGTATG+TGG | + | chr7_2:989811-989830 | Msa1043130:intron | 35.0% | |
| TAGCCTTTCATGTTGTATGT+GGG | + | chr7_2:989812-989831 | Msa1043130:intron | 35.0% | |
| ATTCCCACATACAACATGAA+AGG | - | chr7_2:989818-989837 | None:intergenic | 35.0% | |
| TACCTTGTCATCTTTCACTT+TGG | + | chr7_2:989852-989871 | Msa1043130:intron | 35.0% | |
| ! | GTATCTCAAGCCCATAATTT+TGG | - | chr7_2:989903-989922 | None:intergenic | 35.0% |
| AAAACTCTCAATAGAATGCC+TGG | + | chr7_2:990092-990111 | Msa1043130:intron | 35.0% | |
| ATGGAAATACAACACCAAGA+CGG | - | chr7_2:990121-990140 | None:intergenic | 35.0% | |
| ATTGCAGGTTCTCAAAAACA+TGG | + | chr7_2:990188-990207 | Msa1043130:intron | 35.0% | |
| TTGCAGGTTCTCAAAAACAT+GGG | + | chr7_2:990189-990208 | Msa1043130:intron | 35.0% | |
| !! | AGTTTGGCTTTGTATTTGAG+TGG | + | chr7_2:990293-990312 | Msa1043130:intron | 35.0% |
| ATCATTCATTTCTTCCAGGT+TGG | + | chr7_2:990337-990356 | Msa1043130:intron | 35.0% | |
| ATTTCAATCTTGGCATCCAA+CGG | - | chr7_2:991034-991053 | None:intergenic | 35.0% | |
| TCAGGTCAAATAATACAGGA+CGG | + | chr7_2:991118-991137 | Msa1043130:three_prime_UTR | 35.0% | |
| GAAAAGACCAAAGTAAACAC+CGG | - | chr7_2:991165-991184 | None:intergenic | 35.0% | |
| !!! | GGTCTTTTCTAGTTGAATCA+TGG | + | chr7_2:991176-991195 | Msa1043130:three_prime_UTR | 35.0% |
| GAAAGGCTTAAGCAAAGGAA+GGG | - | chr7_2:988289-988308 | None:intergenic | 40.0% | |
| ! | GTGAAATGATGGGAACTTAC+GGG | - | chr7_2:988320-988339 | None:intergenic | 40.0% |
| !! | CTTTAGGTTGAAAGCATGTC+TGG | + | chr7_2:989180-989199 | Msa1043130:intron | 40.0% |
| ACGTATCATTGTCGTGTCTT+TGG | + | chr7_2:989279-989298 | Msa1043130:intron | 40.0% | |
| CTACAAAGGAAGAGAGACAT+TGG | + | chr7_2:989396-989415 | Msa1043130:intron | 40.0% | |
| GTGCAATTGTGCATTTATGC+TGG | + | chr7_2:989676-989695 | Msa1043130:intron | 40.0% | |
| AGCCAAAGTGAAAGATGACA+AGG | - | chr7_2:989857-989876 | None:intergenic | 40.0% | |
| GGCTTGAGATACTGTTTCAT+TGG | + | chr7_2:989911-989930 | Msa1043130:intron | 40.0% | |
| TGCAGGTTCTCAAAAACATG+GGG | + | chr7_2:990190-990209 | Msa1043130:intron | 40.0% | |
| CTTAACAACTGATGCATAGC+TGG | - | chr7_2:990238-990257 | None:intergenic | 40.0% | |
| !! | TTGGCTTTGTATTTGAGTGG+TGG | + | chr7_2:990296-990315 | Msa1043130:intron | 40.0% |
| ACTTAGCACATTCAGAAAGC+TGG | - | chr7_2:990887-990906 | None:intergenic | 40.0% | |
| ATCAGTTCACATCCAACTAC+CGG | + | chr7_2:991143-991162 | Msa1043130:three_prime_UTR | 40.0% | |
| GTGAGAAAGAAATGGCGTCA+TGG | + | chr7_2:988125-988144 | Msa1043130:exon | 45.0% | |
| GTTGATTGGTGGAATGTGGA+AGG | - | chr7_2:988164-988183 | None:intergenic | 45.0% | |
| AGAAGAAGATGAGCGCAACA+TGG | - | chr7_2:988254-988273 | None:intergenic | 45.0% | |
| GGAAAGGCTTAAGCAAAGGA+AGG | - | chr7_2:988290-988309 | None:intergenic | 45.0% | |
| CAGTGGAAAGGCTTAAGCAA+AGG | - | chr7_2:988294-988313 | None:intergenic | 45.0% | |
| ACTTACGGGTATCAGTGGAA+AGG | - | chr7_2:988306-988325 | None:intergenic | 45.0% | |
| ! | GTGTTGATCGGTGCAACATA+GGG | - | chr7_2:989161-989180 | None:intergenic | 45.0% |
| !! | AGTGTTGATCGGTGCAACAT+AGG | - | chr7_2:989162-989181 | None:intergenic | 45.0% |
| ! | GTTGCACCGATCAACACTTT+AGG | + | chr7_2:989164-989183 | Msa1043130:intron | 45.0% |
| TGGCTATGTCAATGCTCCAT+AGG | + | chr7_2:989299-989318 | Msa1043130:intron | 45.0% | |
| TGCACATGAACACCTGCAAA+AGG | - | chr7_2:989330-989349 | None:intergenic | 45.0% | |
| GGAAGCTGTTCAGACAGAAA+AGG | + | chr7_2:989522-989541 | Msa1043130:CDS | 45.0% | |
| AATACGGTCCTAATGCTGCT+GGG | - | chr7_2:989549-989568 | None:intergenic | 45.0% | |
| GGACACCTGAGACAAATAGA+AGG | - | chr7_2:989594-989613 | None:intergenic | 45.0% | |
| CTATTTGTCTCAGGTGTCCT+TGG | + | chr7_2:989595-989614 | Msa1043130:CDS | 45.0% | |
| TGTTGAAGATCAGACTGAGC+AGG | + | chr7_2:989768-989787 | Msa1043130:CDS | 45.0% | |
| GCAGGTTCTCAAAAACATGG+GGG | + | chr7_2:990191-990210 | Msa1043130:intron | 45.0% | |
| CCAAAGTAAACACCGGTAGT+TGG | - | chr7_2:991158-991177 | None:intergenic | 45.0% | |
| CCAACTACCGGTGTTTACTT+TGG | + | chr7_2:991155-991174 | Msa1043130:three_prime_UTR | 45.0% | |
| ACTAGATTCGCTCAGACACG+AGG | - | chr7_2:988107-988126 | None:intergenic | 50.0% | |
| TGGGAACTTACGGGTATCAG+TGG | - | chr7_2:988311-988330 | None:intergenic | 50.0% | |
| TGATATGACGCTGACACACG+TGG | + | chr7_2:989213-989232 | Msa1043130:intron | 50.0% | |
| CCTGCAAAAGGTGAGTCCTA+TGG | - | chr7_2:989318-989337 | None:intergenic | 50.0% | |
| ! | CCATAGGACTCACCTTTTGC+AGG | + | chr7_2:989315-989334 | Msa1043130:intron | 50.0% |
| ATACGGTCCTAATGCTGCTG+GGG | - | chr7_2:989548-989567 | None:intergenic | 50.0% | |
| GAATACGGTCCTAATGCTGC+TGG | - | chr7_2:989550-989569 | None:intergenic | 50.0% | |
| AAACCTCGGGAACAAGACCA+AGG | - | chr7_2:989615-989634 | None:intergenic | 50.0% | |
| GCAGACAGGGAAGTTTGTCT+CGG | + | chr7_2:989741-989760 | Msa1043130:intron | 50.0% | |
| AGAATGCCTGGTAACCGTCT+TGG | + | chr7_2:990104-990123 | Msa1043130:intron | 50.0% | |
| ACAACACCAAGACGGTTACC+AGG | - | chr7_2:990113-990132 | None:intergenic | 50.0% | |
| ATGGGGGAGATCCTGAAATC+TGG | + | chr7_2:990207-990226 | Msa1043130:CDS | 50.0% | |
| TGGGGGAGATCCTGAAATCT+GGG | + | chr7_2:990208-990227 | Msa1043130:CDS | 50.0% | |
| !! | TTCCAGGTTGGCTGACTTGA+AGG | + | chr7_2:990349-990368 | Msa1043130:intron | 50.0% |
| AATCTTGGCATCCAACGGCA+AGG | - | chr7_2:991029-991048 | None:intergenic | 50.0% | |
| CTCAGACACGAGGCAGTTCA+CGG | - | chr7_2:988097-988116 | None:intergenic | 55.0% | |
| !! | CGGCGTTGATTGGTGGAATG+TGG | - | chr7_2:988168-988187 | None:intergenic | 55.0% |
| GAAAAGGCCCCAGCAGCATT+AGG | + | chr7_2:989538-989557 | Msa1043130:CDS | 55.0% | |
| !! | TGTCCTTGGTCTTGTTCCCG+AGG | + | chr7_2:989609-989628 | Msa1043130:CDS | 55.0% |
| GGGGGAGATCCTGAAATCTG+GGG | + | chr7_2:990209-990228 | Msa1043130:CDS | 55.0% | |
| GGGGAGATCCTGAAATCTGG+GGG | + | chr7_2:990210-990229 | Msa1043130:CDS | 55.0% | |
| GTCCTTCAAGTCAGCCAACC+TGG | - | chr7_2:990354-990373 | None:intergenic | 55.0% | |
| TTGATACGTCGCACGAGCTG+GGG | - | chr7_2:990999-991018 | None:intergenic | 55.0% | |
| CTTGATACGTCGCACGAGCT+GGG | - | chr7_2:991000-991019 | None:intergenic | 55.0% | |
| ACTTGATACGTCGCACGAGC+TGG | - | chr7_2:991001-991020 | None:intergenic | 55.0% | |
| TCAAGTAGCTGCCTTGCCGT+TGG | + | chr7_2:991015-991034 | Msa1043130:CDS | 55.0% | |
| TGGCGTCATGGTGTGCAGCA+AGG | + | chr7_2:988137-988156 | Msa1043130:CDS | 60.0% | |
| !! | AGAACGGCGGCGTTGATTGG+TGG | - | chr7_2:988175-988194 | None:intergenic | 60.0% |
| !! | TGGAGAACGGCGGCGTTGAT+TGG | - | chr7_2:988178-988197 | None:intergenic | 60.0% |
| !! | AACGGAGACTCCGCCGATTC+CGG | - | chr7_2:988221-988240 | None:intergenic | 60.0% |
| !! | CAACATGGCAGTGCCGGCAA+CGG | - | chr7_2:988239-988258 | None:intergenic | 60.0% |
| TGAGCGCAACATGGCAGTGC+CGG | - | chr7_2:988245-988264 | None:intergenic | 60.0% | |
| AGCTGGCACCCCCAGATTTC+AGG | - | chr7_2:990221-990240 | None:intergenic | 60.0% | |
| TCAACGCCGCCGTTCTCCAC+CGG | + | chr7_2:988179-988198 | Msa1043130:CDS | 65.0% | |
| ! | TGAAGCGCGCCGGTGGAGAA+CGG | - | chr7_2:988191-988210 | None:intergenic | 65.0% |
| TTCTCCACCGGCGCGCTTCA+TGG | + | chr7_2:988191-988210 | Msa1043130:CDS | 65.0% | |
| TCTCCACCGGCGCGCTTCAT+GGG | + | chr7_2:988192-988211 | Msa1043130:CDS | 65.0% | |
| GCTTCATGGGCCGCCGGAAT+CGG | + | chr7_2:988205-988224 | Msa1043130:CDS | 65.0% | |
| ATCGGCGGAGTCTCCGTTGC+CGG | + | chr7_2:988223-988242 | Msa1043130:CDS | 65.0% | |
| TCATGGGCCGCCGGAATCGG+CGG | + | chr7_2:988208-988227 | Msa1043130:CDS | 70.0% | |
| !! | GGAGACTCCGCCGATTCCGG+CGG | - | chr7_2:988218-988237 | None:intergenic | 70.0% |
| GCACGAGCTGGGGCAGGTGA+AGG | - | chr7_2:990989-991008 | None:intergenic | 70.0% | |
| TACGTCGCACGAGCTGGGGC+AGG | - | chr7_2:990995-991014 | None:intergenic | 70.0% | |
| ! | AGCGCGCCGGTGGAGAACGG+CGG | - | chr7_2:988188-988207 | None:intergenic | 75.0% |
| ! | CGGCCCATGAAGCGCGCCGG+TGG | - | chr7_2:988198-988217 | None:intergenic | 80.0% |
| ! | CGGCGGCCCATGAAGCGCGC+CGG | - | chr7_2:988201-988220 | None:intergenic | 80.0% |
| ! | CGGCGCGCTTCATGGGCCGC+CGG | + | chr7_2:988199-988218 | Msa1043130:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 988025 | 991388 | 988025 | ID=Msa1043130;Name=Msa1043130 |
| chr7_2 | mRNA | 988025 | 991388 | 988025 | ID=Msa1043130-mRNA-1;Parent=Msa1043130;Name=Msa1043130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=111|1|1|1|1|1|6|313|188 |
| chr7_2 | exon | 988025 | 988319 | 988025 | ID=Msa1043130-mRNA-1:exon:170;Parent=Msa1043130-mRNA-1 |
| chr7_2 | exon | 989512 | 989630 | 989512 | ID=Msa1043130-mRNA-1:exon:171;Parent=Msa1043130-mRNA-1 |
| chr7_2 | exon | 989745 | 989789 | 989745 | ID=Msa1043130-mRNA-1:exon:172;Parent=Msa1043130-mRNA-1 |
| chr7_2 | exon | 990195 | 990268 | 990195 | ID=Msa1043130-mRNA-1:exon:173;Parent=Msa1043130-mRNA-1 |
| chr7_2 | exon | 990355 | 990404 | 990355 | ID=Msa1043130-mRNA-1:exon:174;Parent=Msa1043130-mRNA-1 |
| chr7_2 | exon | 990981 | 991388 | 990981 | ID=Msa1043130-mRNA-1:exon:175;Parent=Msa1043130-mRNA-1 |
| chr7_2 | five_prime_UTR | 988025 | 988135 | 988025 | ID=Msa1043130-mRNA-1:five_prime_utr;Parent=Msa1043130-mRNA-1 |
| chr7_2 | CDS | 988136 | 988319 | 988136 | ID=Msa1043130-mRNA-1:cds;Parent=Msa1043130-mRNA-1 |
| chr7_2 | CDS | 989512 | 989630 | 989512 | ID=Msa1043130-mRNA-1:cds;Parent=Msa1043130-mRNA-1 |
| chr7_2 | CDS | 989745 | 989789 | 989745 | ID=Msa1043130-mRNA-1:cds;Parent=Msa1043130-mRNA-1 |
| chr7_2 | CDS | 990195 | 990268 | 990195 | ID=Msa1043130-mRNA-1:cds;Parent=Msa1043130-mRNA-1 |
| chr7_2 | CDS | 990355 | 990404 | 990355 | ID=Msa1043130-mRNA-1:cds;Parent=Msa1043130-mRNA-1 |
| chr7_2 | CDS | 990981 | 991075 | 990981 | ID=Msa1043130-mRNA-1:cds;Parent=Msa1043130-mRNA-1 |
| chr7_2 | three_prime_UTR | 991076 | 991388 | 991076 | ID=Msa1043130-mRNA-1:three_prime_utr;Parent=Msa1043130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
