Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362020 | XP_003625951.1 | 93.023 | 344 | 5 | 1 | 1 | 325 | 1 | 344 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362020 | sp|Q9LZK5|DNJ19_ARATH | 72.911 | 347 | 71 | 3 | 1 | 325 | 1 | 346 | 0.0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362020 | G7KSR8 | 93.023 | 344 | 5 | 1 | 1 | 325 | 1 | 344 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa1362020 | 0.896767 | 2.687852e-76 | -8.615850e-47 |
| Msa0033880 | Msa1362020 | 0.812920 | 3.325006e-51 | -8.615850e-47 |
| Msa0049780 | Msa1362020 | 0.801670 | 8.071708e-49 | -8.615850e-47 |
| Msa0057890 | Msa1362020 | 0.862251 | 5.785968e-64 | -8.615850e-47 |
| Msa0077540 | Msa1362020 | 0.805575 | 1.249352e-49 | -8.615850e-47 |
| Msa0081650 | Msa1362020 | 0.803586 | 3.247516e-49 | -8.615850e-47 |
| Msa0100800 | Msa1362020 | 0.822218 | 2.664825e-53 | -8.615850e-47 |
| Msa0102600 | Msa1362020 | 0.902012 | 1.497261e-78 | -8.615850e-47 |
| Msa1362020 | Msa1403530 | -0.815265 | 1.009885e-51 | -8.615850e-47 |
| Msa1362020 | Msa1418280 | 0.829501 | 4.969240e-55 | -8.615850e-47 |
| Msa1362020 | Msa1421460 | 0.869343 | 3.325400e-66 | -8.615850e-47 |
| Msa1362020 | Msa1422430 | 0.826772 | 2.258367e-54 | -8.615850e-47 |
| Msa1362020 | Msa1450550 | -0.805986 | 1.024316e-49 | -8.615850e-47 |
| Msa0620620 | Msa1362020 | 0.828273 | 9.852749e-55 | -8.615850e-47 |
| Msa0707100 | Msa1362020 | 0.838729 | 2.418735e-57 | -8.615850e-47 |
| Msa0739080 | Msa1362020 | 0.828264 | 9.901092e-55 | -8.615850e-47 |
| Msa0745200 | Msa1362020 | 0.823505 | 1.336208e-53 | -8.615850e-47 |
| Msa0790440 | Msa1362020 | -0.802710 | 4.930732e-49 | -8.615850e-47 |
| Msa0819540 | Msa1362020 | 0.859052 | 5.400960e-63 | -8.615850e-47 |
| Msa0826760 | Msa1362020 | 0.822526 | 2.259674e-53 | -8.615850e-47 |
| Msa0127850 | Msa1362020 | 0.811762 | 5.954049e-51 | -8.615850e-47 |
| Msa0147380 | Msa1362020 | 0.900806 | 5.063554e-78 | -8.615850e-47 |
| Msa0174000 | Msa1362020 | 0.816748 | 4.713270e-52 | -8.615850e-47 |
| Msa0185350 | Msa1362020 | 0.820398 | 7.006747e-53 | -8.615850e-47 |
| Msa0208310 | Msa1362020 | 0.841773 | 3.876177e-58 | -8.615850e-47 |
| Msa0215590 | Msa1362020 | 0.834263 | 3.316101e-56 | -8.615850e-47 |
| Msa0225670 | Msa1362020 | 0.821041 | 4.984261e-53 | -8.615850e-47 |
| Msa1235380 | Msa1362020 | 0.849071 | 4.090165e-60 | -8.615850e-47 |
| Msa1315440 | Msa1362020 | 0.808646 | 2.796505e-50 | -8.615850e-47 |
| Msa0372420 | Msa1362020 | 0.866726 | 2.310137e-65 | -8.615850e-47 |
| Msa0382400 | Msa1362020 | 0.899369 | 2.121018e-77 | -8.615850e-47 |
| Msa0384880 | Msa1362020 | 0.801186 | 1.014015e-48 | -8.615850e-47 |
| Msa0391400 | Msa1362020 | 0.813364 | 2.657122e-51 | -8.615850e-47 |
| Msa0392200 | Msa1362020 | 0.817725 | 2.841064e-52 | -8.615850e-47 |
| Msa0408300 | Msa1362020 | 0.831048 | 2.081092e-55 | -8.615850e-47 |
| Msa0432130 | Msa1362020 | 0.843622 | 1.251176e-58 | -8.615850e-47 |
| Msa0438000 | Msa1362020 | 0.816262 | 6.056026e-52 | -8.615850e-47 |
| Msa0460930 | Msa1362020 | 0.804041 | 2.613135e-49 | -8.615850e-47 |
| Msa0476640 | Msa1362020 | 0.848536 | 5.756336e-60 | -8.615850e-47 |
| Msa1041140 | Msa1362020 | 0.980155 | 1.433224e-149 | -8.615850e-47 |
| Msa1070390 | Msa1362020 | 0.802022 | 6.831996e-49 | -8.615850e-47 |
| Msa1079190 | Msa1362020 | 0.852147 | 5.585069e-61 | -8.615850e-47 |
| Msa1082290 | Msa1362020 | 0.893929 | 3.976701e-75 | -8.615850e-47 |
| Msa1082300 | Msa1362020 | 0.823633 | 1.246856e-53 | -8.615850e-47 |
| Msa1083750 | Msa1362020 | 0.823908 | 1.075210e-53 | -8.615850e-47 |
| Msa0255850 | Msa1362020 | 0.807744 | 4.352555e-50 | -8.615850e-47 |
| Msa0270170 | Msa1362020 | -0.828001 | 1.145762e-54 | -8.615850e-47 |
| Msa0304100 | Msa1362020 | 0.805459 | 1.321260e-49 | -8.615850e-47 |
| Msa0333650 | Msa1362020 | 0.834869 | 2.335553e-56 | -8.615850e-47 |
| Msa0346990 | Msa1362020 | 0.808173 | 3.527350e-50 | -8.615850e-47 |
| Msa1124060 | Msa1362020 | 0.802193 | 6.300452e-49 | -8.615850e-47 |
| Msa1124070 | Msa1362020 | 0.825519 | 4.485720e-54 | -8.615850e-47 |
| Msa1127190 | Msa1362020 | 0.931309 | 4.567572e-94 | -8.615850e-47 |
| Msa1127830 | Msa1362020 | 0.801049 | 1.081729e-48 | -8.615850e-47 |
| Msa1128660 | Msa1362020 | 0.821705 | 3.502920e-53 | -8.615850e-47 |
| Msa1131170 | Msa1362020 | 0.814206 | 1.733508e-51 | -8.615850e-47 |
| Msa1133540 | Msa1362020 | 0.852906 | 3.395206e-61 | -8.615850e-47 |
| Msa1168990 | Msa1362020 | 0.851501 | 8.516887e-61 | -8.615850e-47 |
| Msa1169080 | Msa1362020 | 0.865704 | 4.867876e-65 | -8.615850e-47 |
| Msa0541040 | Msa1362020 | 0.822385 | 2.436799e-53 | -8.615850e-47 |
| Msa0547080 | Msa1362020 | 0.807036 | 6.149304e-50 | -8.615850e-47 |
| Msa0573010 | Msa1362020 | 0.808594 | 2.868434e-50 | -8.615850e-47 |
| Msa0573090 | Msa1362020 | 0.841978 | 3.421877e-58 | -8.615850e-47 |
| Msa0597000 | Msa1362020 | 0.856952 | 2.271659e-62 | -8.615850e-47 |
| Msa0865570 | Msa1362020 | 0.818088 | 2.352634e-52 | -8.615850e-47 |
| Msa0867160 | Msa1362020 | 0.837631 | 4.637932e-57 | -8.615850e-47 |
| Msa0932100 | Msa1362020 | 0.802025 | 6.821607e-49 | -8.615850e-47 |
| Msa0970230 | Msa1362020 | 0.803215 | 3.877593e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362020 | MtrunA17_Chr7g0269841 | 93.023 | 344 | 5 | 1 | 1 | 325 | 1 | 344 | 0.0 | 656 |
| Msa1362020 | MtrunA17_Chr8g0334811 | 33.621 | 348 | 181 | 10 | 27 | 324 | 15 | 362 | 3.97e-41 | 148 |
| Msa1362020 | MtrunA17_Chr3g0138471 | 30.275 | 327 | 195 | 8 | 27 | 325 | 5 | 326 | 1.70e-38 | 139 |
| Msa1362020 | MtrunA17_Chr4g0006391 | 33.528 | 343 | 174 | 9 | 27 | 324 | 5 | 338 | 2.64e-38 | 139 |
| Msa1362020 | MtrunA17_Chr4g0040501 | 31.686 | 344 | 186 | 8 | 27 | 325 | 5 | 344 | 2.96e-38 | 139 |
| Msa1362020 | MtrunA17_Chr2g0282741 | 30.383 | 339 | 192 | 9 | 27 | 325 | 5 | 339 | 8.57e-35 | 129 |
| Msa1362020 | MtrunA17_Chr2g0324921 | 30.702 | 342 | 183 | 10 | 27 | 325 | 5 | 335 | 7.14e-34 | 127 |
| Msa1362020 | MtrunA17_Chr2g0322181 | 30.058 | 346 | 193 | 8 | 27 | 324 | 14 | 358 | 7.93e-29 | 114 |
| Msa1362020 | MtrunA17_Chr4g0025401 | 31.686 | 344 | 188 | 7 | 27 | 324 | 14 | 356 | 3.22e-28 | 113 |
| Msa1362020 | MtrunA17_Chr1g0194941 | 70.312 | 64 | 19 | 0 | 204 | 267 | 39 | 102 | 8.04e-26 | 99.4 |
| Msa1362020 | MtrunA17_Chr3g0093111 | 26.744 | 344 | 172 | 8 | 27 | 325 | 3 | 311 | 5.74e-25 | 102 |
| Msa1362020 | MtrunA17_Chr4g0010781 | 28.451 | 355 | 187 | 12 | 20 | 320 | 80 | 421 | 9.81e-23 | 98.2 |
| Msa1362020 | MtrunA17_Chr3g0087741 | 25.513 | 341 | 214 | 7 | 20 | 321 | 83 | 422 | 1.10e-20 | 92.0 |
| Msa1362020 | MtrunA17_Chr5g0426951 | 26.667 | 360 | 188 | 10 | 18 | 318 | 75 | 417 | 9.76e-20 | 89.7 |
| Msa1362020 | MtrunA17_Chr3g0123861 | 27.089 | 347 | 199 | 13 | 27 | 323 | 83 | 425 | 3.67e-19 | 87.8 |
| Msa1362020 | MtrunA17_Chr5g0415751 | 33.083 | 133 | 88 | 1 | 193 | 324 | 28 | 160 | 8.93e-17 | 76.6 |
| Msa1362020 | MtrunA17_Chr3g0124801 | 31.351 | 185 | 119 | 5 | 143 | 324 | 112 | 291 | 1.92e-15 | 75.5 |
| Msa1362020 | MtrunA17_Chr6g0478651 | 26.446 | 363 | 192 | 14 | 25 | 323 | 67 | 418 | 3.03e-15 | 76.3 |
| Msa1362020 | MtrunA17_Chr2g0277721 | 28.873 | 142 | 99 | 2 | 185 | 324 | 118 | 259 | 1.38e-11 | 63.9 |
| Msa1362020 | MtrunA17_Chr2g0282761 | 61.702 | 47 | 17 | 1 | 27 | 72 | 5 | 51 | 2.21e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362020 | AT3G62600.1 | 72.911 | 347 | 71 | 3 | 1 | 325 | 1 | 346 | 0.0 | 507 |
| Msa1362020 | AT5G01390.1 | 31.085 | 341 | 180 | 9 | 27 | 324 | 5 | 333 | 5.54e-41 | 146 |
| Msa1362020 | AT2G20560.1 | 31.287 | 342 | 183 | 8 | 27 | 325 | 5 | 337 | 7.08e-41 | 145 |
| Msa1362020 | AT3G08910.1 | 32.635 | 334 | 171 | 9 | 27 | 324 | 5 | 320 | 1.39e-40 | 144 |
| Msa1362020 | AT5G25530.2 | 31.268 | 339 | 188 | 10 | 27 | 325 | 5 | 338 | 7.41e-38 | 138 |
| Msa1362020 | AT5G25530.1 | 30.548 | 347 | 188 | 10 | 27 | 325 | 5 | 346 | 9.64e-37 | 135 |
| Msa1362020 | AT5G22060.1 | 32.759 | 348 | 181 | 11 | 27 | 324 | 15 | 359 | 9.97e-34 | 128 |
| Msa1362020 | AT1G59725.1 | 28.611 | 360 | 161 | 9 | 27 | 325 | 5 | 329 | 1.31e-33 | 126 |
| Msa1362020 | AT5G01390.2 | 29.129 | 333 | 139 | 8 | 27 | 324 | 5 | 275 | 1.18e-28 | 112 |
| Msa1362020 | AT3G44110.1 | 29.143 | 350 | 190 | 9 | 27 | 324 | 15 | 358 | 1.60e-28 | 114 |
| Msa1362020 | AT5G48030.1 | 27.874 | 348 | 198 | 7 | 20 | 317 | 88 | 432 | 9.44e-25 | 104 |
| Msa1362020 | AT1G10350.1 | 37.179 | 156 | 96 | 1 | 170 | 325 | 194 | 347 | 1.63e-23 | 99.4 |
| Msa1362020 | AT2G20550.1 | 32.787 | 183 | 118 | 3 | 144 | 325 | 106 | 284 | 8.38e-23 | 96.3 |
| Msa1362020 | AT2G20550.2 | 32.787 | 183 | 118 | 3 | 144 | 325 | 106 | 284 | 8.38e-23 | 96.3 |
| Msa1362020 | AT3G44110.2 | 29.665 | 209 | 118 | 4 | 113 | 292 | 117 | 325 | 2.80e-21 | 93.2 |
| Msa1362020 | AT2G22360.1 | 29.683 | 347 | 189 | 14 | 27 | 323 | 87 | 428 | 3.72e-20 | 90.9 |
| Msa1362020 | AT4G28480.1 | 31.148 | 183 | 121 | 3 | 144 | 325 | 170 | 348 | 7.13e-20 | 89.4 |
| Msa1362020 | AT1G44160.1 | 29.524 | 210 | 113 | 4 | 128 | 324 | 166 | 353 | 3.17e-19 | 87.4 |
| Msa1362020 | AT4G28480.2 | 35.294 | 136 | 87 | 1 | 191 | 325 | 155 | 290 | 4.68e-19 | 86.3 |
| Msa1362020 | AT4G28480.2 | 59.574 | 47 | 18 | 1 | 27 | 72 | 5 | 51 | 2.42e-11 | 63.9 |
| Msa1362020 | AT4G39960.1 | 26.420 | 352 | 201 | 11 | 27 | 323 | 86 | 434 | 1.95e-16 | 80.1 |
| Msa1362020 | AT4G39960.2 | 26.420 | 352 | 201 | 11 | 27 | 323 | 86 | 434 | 1.95e-16 | 80.1 |
| Msa1362020 | AT3G47940.1 | 32.075 | 159 | 101 | 4 | 170 | 325 | 193 | 347 | 1.79e-14 | 73.6 |
| Msa1362020 | AT1G80030.4 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 1.97e-14 | 74.3 |
| Msa1362020 | AT1G80030.2 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 2.11e-14 | 74.3 |
| Msa1362020 | AT1G80030.3 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 2.11e-14 | 74.3 |
| Msa1362020 | AT1G80030.1 | 26.062 | 353 | 192 | 14 | 27 | 317 | 76 | 421 | 2.11e-14 | 74.3 |
| Msa1362020 | AT5G01390.4 | 28.283 | 198 | 90 | 7 | 27 | 182 | 5 | 192 | 1.16e-12 | 67.0 |
| Msa1362020 | AT1G11040.1 | 33.824 | 136 | 89 | 1 | 190 | 324 | 297 | 432 | 5.09e-12 | 66.6 |
| Msa1362020 | AT5G01390.3 | 36.111 | 108 | 35 | 3 | 27 | 100 | 5 | 112 | 1.39e-11 | 63.9 |
| Msa1362020 | AT5G05750.1 | 38.318 | 107 | 39 | 4 | 25 | 104 | 113 | 219 | 8.54e-11 | 62.4 |
Find 108 sgRNAs with CRISPR-Local
Find 437 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTAGAATTTGGGAATT+AGG | 0.151861 | tig0017690:+164308 | None:intergenic |
| ATGTGATTGGAATTAGAATT+TGG | 0.171341 | tig0017690:+164300 | None:intergenic |
| ATGGAGAATCTGGAGATTTA+AGG | 0.175844 | tig0017690:-159612 | Msa1362020:CDS |
| TCCAGATTCTCCATCAATTA+TGG | 0.185165 | tig0017690:+159621 | None:intergenic |
| AATGTTTCTTTCAGTTTCTT+TGG | 0.228428 | tig0017690:-162969 | Msa1362020:intron |
| CGACGACGTTATTGTTGATT+TGG | 0.287066 | tig0017690:-162904 | Msa1362020:CDS |
| TTGAACTTCCTTACTTGCTT+TGG | 0.294218 | tig0017690:+159011 | None:intergenic |
| AACCCTTGAAGATTTGTATA+TGG | 0.319394 | tig0017690:-162877 | Msa1362020:CDS |
| GAGGTTTATCACAGGCAAAT+TGG | 0.319956 | tig0017690:-162138 | Msa1362020:CDS |
| GAATTAGAATTTGGGAATTA+GGG | 0.327716 | tig0017690:+164309 | None:intergenic |
| GTCATTTGTTGAAACATTCC+AGG | 0.330187 | tig0017690:+162114 | None:intergenic |
| TTATTAGCTTCTTCATTTCC+CGG | 0.331012 | tig0017690:+163975 | None:intergenic |
| TCATTTCCCGGATTCTTATC+AGG | 0.331429 | tig0017690:+163987 | None:intergenic |
| CCCATAATTGATGGAGAATC+TGG | 0.346187 | tig0017690:-159622 | Msa1362020:CDS |
| TGTGATTGGAATTAGAATTT+GGG | 0.350143 | tig0017690:+164301 | None:intergenic |
| AGAATTTGGGAATTAGGGTT+TGG | 0.351219 | tig0017690:+164314 | None:intergenic |
| AGCAAAAGGCTCACTTTGAT+TGG | 0.352124 | tig0017690:-164494 | Msa1362020:five_prime_UTR |
| CTTTAGGTTCAAGCTCTTGT+TGG | 0.355874 | tig0017690:-159199 | Msa1362020:intron |
| TCTCTCCGAAACGCAATCTC+AGG | 0.359226 | tig0017690:+164270 | None:intergenic |
| CCAGATTCTCCATCAATTAT+GGG | 0.369755 | tig0017690:+159622 | None:intergenic |
| CTCAGGGATTTCGATGTGAT+TGG | 0.371305 | tig0017690:+164287 | None:intergenic |
| TGGAGAATCTGGAGATTTAA+GGG | 0.381629 | tig0017690:-159611 | Msa1362020:intron |
| AGGTTTATCACAGGCAAATT+GGG | 0.390498 | tig0017690:-162137 | Msa1362020:CDS |
| GAATTTGGGAATTAGGGTTT+GGG | 0.392506 | tig0017690:+164315 | None:intergenic |
| ACAGAGAAGGAACAACAATT+TGG | 0.396887 | tig0017690:+164219 | None:intergenic |
| ATCAAAATAGCACCACAATA+AGG | 0.397206 | tig0017690:+158677 | None:intergenic |
| TTGATGCGCCATTGAAGATT+CGG | 0.405772 | tig0017690:+164246 | None:intergenic |
| TTTCCGCGAAGACTTGACTA+TGG | 0.405938 | tig0017690:+164427 | None:intergenic |
| CATTTCTTTCTTCAATTGCT+AGG | 0.406440 | tig0017690:+158538 | None:intergenic |
| TTCTTGGTTAGAATACATTC+AGG | 0.416876 | tig0017690:-158875 | Msa1362020:exon |
| GTCACTGTTGATATTGAGAA+AGG | 0.417431 | tig0017690:-161735 | Msa1362020:CDS |
| AGCAAGTAAGGAAGTTCAAA+GGG | 0.426789 | tig0017690:-159007 | Msa1362020:CDS |
| GTCCTCAATGTAACATGATT+AGG | 0.428431 | tig0017690:-158829 | Msa1362020:three_prime_UTR |
| TGAACACCTTGATGAACATT+TGG | 0.431652 | tig0017690:-159161 | Msa1362020:CDS |
| CATGCCGCTGGTGGAGGAAG+AGG | 0.435113 | tig0017690:-163459 | Msa1362020:CDS |
| TCACAAATCCAAAGCAAGTA+AGG | 0.443028 | tig0017690:-159019 | Msa1362020:CDS |
| GTATCATCCTGATAAGAATC+CGG | 0.445522 | tig0017690:-163994 | Msa1362020:CDS |
| TTTCTTTCAGTTTCTTTGGC+GGG | 0.452768 | tig0017690:-162965 | Msa1362020:intron |
| TAAATGTGACCGCACCTTCA+AGG | 0.454412 | tig0017690:+162848 | None:intergenic |
| GACGGCGAGCCCATAATTGA+TGG | 0.455291 | tig0017690:-159631 | Msa1362020:CDS |
| CACCCATATACAAATCTTCA+AGG | 0.462023 | tig0017690:+162874 | None:intergenic |
| TTCTTTGTGCTCATATGCAA+TGG | 0.465194 | tig0017690:+158975 | None:intergenic |
| GCATCTACTGTGATCCTTGT+CGG | 0.469809 | tig0017690:-158710 | Msa1362020:three_prime_UTR |
| AATGTTGTAAAGCCAGCTCC+TGG | 0.471578 | tig0017690:-162186 | Msa1362020:CDS |
| GTATATGGGTGGTTCCTTGA+AGG | 0.471939 | tig0017690:-162862 | Msa1362020:intron |
| TTCTTTCAGTTTCTTTGGCG+GGG | 0.473982 | tig0017690:-162964 | Msa1362020:intron |
| ACCCTTGAAGATTTGTATAT+GGG | 0.478838 | tig0017690:-162876 | Msa1362020:CDS |
| ATTTCTTTCTTCAATTGCTA+GGG | 0.482619 | tig0017690:+158539 | None:intergenic |
| TTTAAAATGTAATTTACCAT+AGG | 0.484246 | tig0017690:+158486 | None:intergenic |
| AGTATAAATTGTCAATCCTA+TGG | 0.486240 | tig0017690:-158502 | Msa1362020:three_prime_UTR |
| AGCTTGCTTTGTGTCTGCAA+TGG | 0.486629 | tig0017690:-158609 | Msa1362020:three_prime_UTR |
| GGAGAGATCCGAATCTTCAA+TGG | 0.487027 | tig0017690:-164254 | Msa1362020:exon |
| GAAAGGCATGAAAGATGGCC+AGG | 0.488282 | tig0017690:-161718 | Msa1362020:intron |
| AAGCAGCATGCCGCTGGTGG+AGG | 0.488986 | tig0017690:-163465 | Msa1362020:CDS |
| GTTTCTTTCAGTTTCTTTGG+CGG | 0.494548 | tig0017690:-162966 | Msa1362020:intron |
| GTGCTAATGTCAAATACGTA+AGG | 0.495722 | tig0017690:-161770 | Msa1362020:CDS |
| TTACAACAAATACACGCCTT+AGG | 0.499816 | tig0017690:-158796 | Msa1362020:three_prime_UTR |
| TATCACAGGCAAATTGGGCC+TGG | 0.501769 | tig0017690:-162132 | Msa1362020:CDS |
| AGAAGCTAATAAGAAATTTG+CGG | 0.505990 | tig0017690:-163964 | Msa1362020:CDS |
| AAATCCCTGAGATTGCGTTT+CGG | 0.510468 | tig0017690:-164275 | Msa1362020:five_prime_UTR |
| CTGTTCCTCCGATAGTGAGG+TGG | 0.511479 | tig0017690:+158917 | None:intergenic |
| TATCATCCTGATAAGAATCC+GGG | 0.516808 | tig0017690:-163993 | Msa1362020:CDS |
| GCCGCTGGTGGAGGAAGAGG+TGG | 0.524267 | tig0017690:-163456 | Msa1362020:CDS |
| GCTGGTGGAGGAAGAGGTGG+TGG | 0.526997 | tig0017690:-163453 | Msa1362020:CDS |
| TGTTCCTCCGATAGTGAGGT+GGG | 0.527665 | tig0017690:+158918 | None:intergenic |
| TTGAAGCAGCATGCCGCTGG+TGG | 0.528180 | tig0017690:-163468 | Msa1362020:CDS |
| CATCTTGTGAGCAAGGTGAA+AGG | 0.531664 | tig0017690:-158582 | Msa1362020:three_prime_UTR |
| GGTTTGAAGCAGCATGCCGC+TGG | 0.535682 | tig0017690:-163471 | Msa1362020:CDS |
| ATTGTAATTATCAGGTTTGG+AGG | 0.539622 | tig0017690:-162215 | Msa1362020:intron |
| TCTGTTCCCCACCTCACTAT+CGG | 0.540991 | tig0017690:-158925 | Msa1362020:CDS |
| TCTTTCAGTTTCTTTGGCGG+GGG | 0.541453 | tig0017690:-162963 | Msa1362020:intron |
| TTGCATATGAGCACAAAGAA+AGG | 0.546751 | tig0017690:-158972 | Msa1362020:CDS |
| ATTGAGAAAGGCATGAAAGA+TGG | 0.548944 | tig0017690:-161723 | Msa1362020:CDS |
| CTTGAAGATTTGTATATGGG+TGG | 0.550525 | tig0017690:-162873 | Msa1362020:CDS |
| ACTCCATAGTCAAGTCTTCG+CGG | 0.553039 | tig0017690:-164430 | Msa1362020:five_prime_UTR |
| TTGTAATTATCAGGTTTGGA+GGG | 0.555966 | tig0017690:-162214 | Msa1362020:intron |
| AAGCAAGTAAGGAAGTTCAA+AGG | 0.564203 | tig0017690:-159008 | Msa1362020:CDS |
| TGTCTACCAAATGTTCATCA+AGG | 0.574433 | tig0017690:+159155 | None:intergenic |
| GTTTCAACAAATGACAGAGC+AGG | 0.577760 | tig0017690:-162106 | Msa1362020:intron |
| CTCTCCGAAACGCAATCTCA+GGG | 0.582900 | tig0017690:+164271 | None:intergenic |
| GTAAGGAAGTTCAAAGGGGA+GGG | 0.585483 | tig0017690:-159002 | Msa1362020:CDS |
| AATCGCTTCTTCTATTACGA+CGG | 0.588377 | tig0017690:+164373 | None:intergenic |
| CACCTAATCATGTTACATTG+AGG | 0.596632 | tig0017690:+158827 | None:intergenic |
| ACGCTGTAACTGTAGAAATG+AGG | 0.598744 | tig0017690:-162157 | Msa1362020:CDS |
| TGCTAATGTCAAATACGTAA+GGG | 0.599841 | tig0017690:-161769 | Msa1362020:CDS |
| TCAAGTGTCGAAAGGTGCAT+CGG | 0.599920 | tig0017690:-164057 | Msa1362020:CDS |
| AATAGCATAGAGCACAGAGA+AGG | 0.608834 | tig0017690:+164206 | None:intergenic |
| AGTAAGGAAGTTCAAAGGGG+AGG | 0.612915 | tig0017690:-159003 | Msa1362020:CDS |
| ATGTTCATCAAGGTGTTCAA+CGG | 0.613159 | tig0017690:+159165 | None:intergenic |
| ACCACCTCTTCCTCCACCAG+CGG | 0.613282 | tig0017690:+163455 | None:intergenic |
| GGCACATGAGTGCCTTATTG+TGG | 0.615842 | tig0017690:-158689 | Msa1362020:three_prime_UTR |
| AAGGCACTCATGTGCCGACA+AGG | 0.617284 | tig0017690:+158696 | None:intergenic |
| AAATTTGCGGAGATTAGCAA+TGG | 0.617908 | tig0017690:-163951 | Msa1362020:intron |
| GTAGAAATGAGGTTTATCAC+AGG | 0.618569 | tig0017690:-162146 | Msa1362020:CDS |
| AATGTCAAATACGTAAGGGA+GGG | 0.618582 | tig0017690:-161765 | Msa1362020:CDS |
| AGGTGGTGGAATGAACATGC+AGG | 0.620609 | tig0017690:-163439 | Msa1362020:CDS |
| TTTCTGTTCCTCCGATAGTG+AGG | 0.622344 | tig0017690:+158914 | None:intergenic |
| GAAGAAGAGAAAATTGCGAA+AGG | 0.633709 | tig0017690:-162927 | Msa1362020:CDS |
| TAATGTCAAATACGTAAGGG+AGG | 0.634516 | tig0017690:-161766 | Msa1362020:CDS |
| ACCCATATACAAATCTTCAA+GGG | 0.634761 | tig0017690:+162875 | None:intergenic |
| GATATACTTCAAGTGTCGAA+AGG | 0.635494 | tig0017690:-164065 | Msa1362020:CDS |
| CACGACTGTCACTATCACGC+TGG | 0.651681 | tig0017690:-159440 | Msa1362020:intron |
| GTTCCTCCGATAGTGAGGTG+GGG | 0.652557 | tig0017690:+158919 | None:intergenic |
| TTTGGTAGACATAAGCTCGA+AGG | 0.653250 | tig0017690:-159143 | Msa1362020:intron |
| CTCAATGTAACATGATTAGG+TGG | 0.663853 | tig0017690:-158826 | Msa1362020:three_prime_UTR |
| GTTCCCCACCTCACTATCGG+AGG | 0.706891 | tig0017690:-158922 | Msa1362020:CDS |
| GCAAGTAAGGAAGTTCAAAG+GGG | 0.733693 | tig0017690:-159006 | Msa1362020:CDS |
| AAAGTTCATGAGGTGCTGTG+CGG | 0.790333 | tig0017690:+159488 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTATAAGCTATATT+AGG | - | tig0017690:159251-159270 | Msa1362020:intron | 10.0% |
| !!! | TATTTTTATAAGCTATATTA+GGG | - | tig0017690:159252-159271 | Msa1362020:intron | 10.0% |
| !! | AATCAAATAATATATGTTTA+TGG | - | tig0017690:159706-159725 | Msa1362020:intron | 10.0% |
| !!! | TTTTATTTATGATTTTCTAT+TGG | + | tig0017690:160386-160405 | None:intergenic | 10.0% |
| !! | ATATATAAATTAAACATTTC+TGG | + | tig0017690:161039-161058 | None:intergenic | 10.0% |
| !!! | AATAAAAATAAAGTATCTAT+TGG | + | tig0017690:164236-164255 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAGCTATATTAG+GGG | - | tig0017690:159253-159272 | Msa1362020:intron | 15.0% |
| !! | AGAAATATTTATGATAAGTA+TGG | - | tig0017690:159477-159496 | Msa1362020:CDS | 15.0% |
| !! | AATGACTATATTAAAATTTG+TGG | + | tig0017690:159855-159874 | None:intergenic | 15.0% |
| !! | TGTATTTAATTATTTACCAA+TGG | - | tig0017690:160189-160208 | Msa1362020:intron | 15.0% |
| !! | GTATTTAATTATTTACCAAT+GGG | - | tig0017690:160190-160209 | Msa1362020:intron | 15.0% |
| !! | ATTATTGTATTGTAATTATC+AGG | - | tig0017690:160755-160774 | Msa1362020:intron | 15.0% |
| !! | AAAATATACATCCTAAAAAA+TGG | + | tig0017690:160951-160970 | None:intergenic | 15.0% |
| !!! | CATAAATTTTTGCAAATATT+CGG | + | tig0017690:161147-161166 | None:intergenic | 15.0% |
| !!! | GATATAAATTAAGTTTGTTT+TGG | + | tig0017690:162725-162744 | None:intergenic | 15.0% |
| !! | AAGGATAAACATAAAAAATA+CGG | - | tig0017690:162771-162790 | Msa1362020:intron | 15.0% |
| !!! | TTTCCTTTAAAAAAAAAACA+AGG | + | tig0017690:163060-163079 | None:intergenic | 15.0% |
| !! | ACAAAAATAAAATCAATTCT+TGG | - | tig0017690:164087-164106 | Msa1362020:intron | 15.0% |
| !! | TTTGCTTATAAATCTATGTT+TGG | - | tig0017690:158870-158889 | Msa1362020:exon | 20.0% |
| !! | TACATAAACACTTATATGAT+AGG | + | tig0017690:159170-159189 | None:intergenic | 20.0% |
| !! | AGTGAAAATGTTTACTTATA+AGG | - | tig0017690:159222-159241 | Msa1362020:intron | 20.0% |
| !!! | TTTTTATAAGCTATATTAGG+GGG | - | tig0017690:159254-159273 | Msa1362020:intron | 20.0% |
| !! | ACCATTAATAACCAAAATAA+GGG | + | tig0017690:159403-159422 | None:intergenic | 20.0% |
| !! | AACCATTAATAACCAAAATA+AGG | + | tig0017690:159404-159423 | None:intergenic | 20.0% |
| !! | ACATTTCAGATATGTATTAT+CGG | - | tig0017690:159633-159652 | Msa1362020:CDS | 20.0% |
| !!! | TACTTTATTTTTACTTGCAT+TGG | - | tig0017690:159661-159680 | Msa1362020:intron | 20.0% |
| !!! | TTGTATGCTAATTTTTAGTA+TGG | - | tig0017690:159948-159967 | Msa1362020:intron | 20.0% |
| !!! | TGTATGCTAATTTTTAGTAT+GGG | - | tig0017690:159949-159968 | Msa1362020:intron | 20.0% |
| !! | TGAAAGAAACATTCATATTT+CGG | + | tig0017690:160002-160021 | None:intergenic | 20.0% |
| !! | TTGAATAATATACTAGTAGA+TGG | - | tig0017690:160276-160295 | Msa1362020:intron | 20.0% |
| !! | TGAATAATATACTAGTAGAT+GGG | - | tig0017690:160277-160296 | Msa1362020:intron | 20.0% |
| !!! | ATATCTGAGATTTATCAAAA+GGG | + | tig0017690:160528-160547 | None:intergenic | 20.0% |
| !!! | AATATCTGAGATTTATCAAA+AGG | + | tig0017690:160529-160548 | None:intergenic | 20.0% |
| !!! | TTTATTCTTGTCCATTTTTT+AGG | - | tig0017690:160937-160956 | Msa1362020:intron | 20.0% |
| !!! | AACTTTTAAAGTTTGTATGT+AGG | - | tig0017690:161285-161304 | Msa1362020:intron | 20.0% |
| !! | TAATATTTATTTACCCTGAT+AGG | - | tig0017690:161632-161651 | Msa1362020:intron | 20.0% |
| !! | AATATTTATTTACCCTGATA+GGG | - | tig0017690:161633-161652 | Msa1362020:intron | 20.0% |
| !! | TGTCTTAGAAAAACTATATA+TGG | - | tig0017690:161809-161828 | Msa1362020:intron | 20.0% |
| !!! | TATTAGAAGAGATTTTTGAA+GGG | - | tig0017690:162405-162424 | Msa1362020:intron | 20.0% |
| !!! | CCAAAATAACTTGAATTTTT+TGG | + | tig0017690:162590-162609 | None:intergenic | 20.0% |
| !!! | CCAAAAAATTCAAGTTATTT+TGG | - | tig0017690:162587-162606 | Msa1362020:intron | 20.0% |
| !!! | TGTTTTGGTCAAAAAAAAAA+TGG | + | tig0017690:162710-162729 | None:intergenic | 20.0% |
| !! | GTCATTTAAATCTAAATCTT+AGG | + | tig0017690:162851-162870 | None:intergenic | 20.0% |
| !! | TAGTTTATGCAAATATTAGA+TGG | - | tig0017690:163022-163041 | Msa1362020:intron | 20.0% |
| !!! | GATCCTTGTTTTTTTTTTAA+AGG | - | tig0017690:163054-163073 | Msa1362020:intron | 20.0% |
| !! | TTGGTTAACTAACAAAAAAT+GGG | + | tig0017690:164217-164236 | None:intergenic | 20.0% |
| !! | ATTGGTTAACTAACAAAAAA+TGG | + | tig0017690:164218-164237 | None:intergenic | 20.0% |
| ! | GAATTAGAATTTGGGAATTA+GGG | + | tig0017690:158672-158691 | None:intergenic | 25.0% |
| ! | TGTGATTGGAATTAGAATTT+GGG | + | tig0017690:158680-158699 | None:intergenic | 25.0% |
| ! | ATGTGATTGGAATTAGAATT+TGG | + | tig0017690:158681-158700 | None:intergenic | 25.0% |
| ! | AGGAAAACAGAAAAATTACA+CGG | + | tig0017690:158813-158832 | None:intergenic | 25.0% |
| ! | AGAAGCTAATAAGAAATTTG+CGG | - | tig0017690:159014-159033 | Msa1362020:CDS | 25.0% |
| !! | TTTTATAAGCTATATTAGGG+GGG | - | tig0017690:159255-159274 | Msa1362020:intron | 25.0% |
| !!! | ATTAAGTTGAAAACAGCTTA+TGG | - | tig0017690:159286-159305 | Msa1362020:intron | 25.0% |
| !!! | TCCCTTATTTTGGTTATTAA+TGG | - | tig0017690:159399-159418 | Msa1362020:intron | 25.0% |
| !! | ATGTGATAGTGTTAACTTAT+AGG | + | tig0017690:159617-159636 | None:intergenic | 25.0% |
| ! | ATTATCACACTAACTGTAAT+CGG | - | tig0017690:159767-159786 | Msa1362020:intron | 25.0% |
| ! | GAATCAATAAAACCATATGA+AGG | + | tig0017690:159795-159814 | None:intergenic | 25.0% |
| !!! | GTATGCTAATTTTTAGTATG+GGG | - | tig0017690:159950-159969 | Msa1362020:intron | 25.0% |
| ! | AATGTTTCTTTCAGTTTCTT+TGG | - | tig0017690:160009-160028 | Msa1362020:intron | 25.0% |
| !! | GTATTTTCATTGAGAAAATC+AGG | - | tig0017690:160578-160597 | Msa1362020:intron | 25.0% |
| ! | TGTATTGTAATTATCAGGTT+TGG | - | tig0017690:160760-160779 | Msa1362020:intron | 25.0% |
| ! | AAAAATGGACAAGAATAAAC+AGG | + | tig0017690:160936-160955 | None:intergenic | 25.0% |
| !! | ACAAACTTTAAAAGTTTACC+TGG | + | tig0017690:161281-161300 | None:intergenic | 25.0% |
| !!! | ATATAGTTTTTCTAAGACAC+TGG | + | tig0017690:161808-161827 | None:intergenic | 25.0% |
| !!! | GAGTGTTTTTTTGTTTTGAA+TGG | - | tig0017690:162075-162094 | Msa1362020:intron | 25.0% |
| !!! | TTGTTTTGAATGGAGTATTA+TGG | - | tig0017690:162085-162104 | Msa1362020:intron | 25.0% |
| !! | CTATTAGAAGAGATTTTTGA+AGG | - | tig0017690:162404-162423 | Msa1362020:intron | 25.0% |
| ! | AAACAATGTTCAATACAAGA+AGG | - | tig0017690:162752-162771 | Msa1362020:intron | 25.0% |
| ! | AATCTTAGGTGAAGTTTATT+AGG | + | tig0017690:162837-162856 | None:intergenic | 25.0% |
| !! | AACTAATTTTCAGCTTAAAC+AGG | + | tig0017690:163007-163026 | None:intergenic | 25.0% |
| ! | TTTATGCAAATATTAGATGG+TGG | - | tig0017690:163025-163044 | Msa1362020:intron | 25.0% |
| ! | TTATGCAAATATTAGATGGT+GGG | - | tig0017690:163026-163045 | Msa1362020:intron | 25.0% |
| ! | CTTGACTAATTGAATGTTTA+TGG | - | tig0017690:163285-163304 | Msa1362020:intron | 25.0% |
| !! | CATTTGCTAACAAAAATGAA+AGG | + | tig0017690:163403-163422 | None:intergenic | 25.0% |
| ! | AAACTGTTCATATTAGCATA+TGG | + | tig0017690:163465-163484 | None:intergenic | 25.0% |
| ! | TTTAATACTTACTACAACAG+TGG | + | tig0017690:163647-163666 | None:intergenic | 25.0% |
| ! | TGGTTAACTAACAAAAAATG+GGG | + | tig0017690:164216-164235 | None:intergenic | 25.0% |
| !!! | CTAGGGATATTTTGTTTAAT+TGG | + | tig0017690:164425-164444 | None:intergenic | 25.0% |
| ! | ATTTCTTTCTTCAATTGCTA+GGG | + | tig0017690:164442-164461 | None:intergenic | 25.0% |
| ! | AGTATAAATTGTCAATCCTA+TGG | - | tig0017690:164476-164495 | Msa1362020:five_prime_UTR | 25.0% |
| GGAATTAGAATTTGGGAATT+AGG | + | tig0017690:158673-158692 | None:intergenic | 30.0% | |
| TTTCGAGAAACGGTAATAAA+AGG | + | tig0017690:158833-158852 | None:intergenic | 30.0% | |
| !! | TCAACAACATTTTCGAGAAA+CGG | + | tig0017690:158843-158862 | None:intergenic | 30.0% |
| ! | TTATTAGCTTCTTCATTTCC+CGG | + | tig0017690:159006-159025 | None:intergenic | 30.0% |
| TTTATAAGCTATATTAGGGG+GGG | - | tig0017690:159256-159275 | Msa1362020:intron | 30.0% | |
| ACTTATTCGAAATTATCGAG+TGG | + | tig0017690:159367-159386 | None:intergenic | 30.0% | |
| !! | ATACAAACAGTCCCTTATTT+TGG | - | tig0017690:159389-159408 | Msa1362020:intron | 30.0% |
| TTATGATAAGTATGGTGAAG+AGG | - | tig0017690:159485-159504 | Msa1362020:CDS | 30.0% | |
| TATGATAAGTATGGTGAAGA+GGG | - | tig0017690:159486-159505 | Msa1362020:CDS | 30.0% | |
| GTTAAGAACTAATCAAGCAA+AGG | + | tig0017690:159595-159614 | None:intergenic | 30.0% | |
| CTAAGAAAAGCAGTTATAGA+AGG | - | tig0017690:159729-159748 | Msa1362020:intron | 30.0% | |
| TAAAAATTGATGCAGACATG+AGG | + | tig0017690:159827-159846 | None:intergenic | 30.0% | |
| ATTATGTTGTCATGTGTAAG+TGG | - | tig0017690:159890-159909 | Msa1362020:intron | 30.0% | |
| !!! | TAATTTTTAGTATGGGGTTC+TGG | - | tig0017690:159956-159975 | Msa1362020:intron | 30.0% |
| AACCCTTGAAGATTTGTATA+TGG | - | tig0017690:160101-160120 | Msa1362020:intron | 30.0% | |
| ACCCTTGAAGATTTGTATAT+GGG | - | tig0017690:160102-160121 | Msa1362020:intron | 30.0% | |
| ACCCATATACAAATCTTCAA+GGG | + | tig0017690:160106-160125 | None:intergenic | 30.0% | |
| AATATACTAGTAGATGGGTA+TGG | - | tig0017690:160282-160301 | Msa1362020:intron | 30.0% | |
| ATATACTAGTAGATGGGTAT+GGG | - | tig0017690:160283-160302 | Msa1362020:intron | 30.0% | |
| AACTAAGAAGAACTGCTTTA+GGG | - | tig0017690:160441-160460 | Msa1362020:intron | 30.0% | |
| CCATGATAATACATGAATAG+TGG | + | tig0017690:160615-160634 | None:intergenic | 30.0% | |
| CCACTATTCATGTATTATCA+TGG | - | tig0017690:160612-160631 | Msa1362020:intron | 30.0% | |
| ATTGTAATTATCAGGTTTGG+AGG | - | tig0017690:160763-160782 | Msa1362020:intron | 30.0% | |
| TTGTAATTATCAGGTTTGGA+GGG | - | tig0017690:160764-160783 | Msa1362020:intron | 30.0% | |
| GACATTTCATTGTATGATTG+TGG | - | tig0017690:161010-161029 | Msa1362020:intron | 30.0% | |
| !!! | TTTTTTCCTTATGTGCTTGA+GGG | - | tig0017690:161087-161106 | Msa1362020:intron | 30.0% |
| TGCTAATGTCAAATACGTAA+GGG | - | tig0017690:161209-161228 | Msa1362020:intron | 30.0% | |
| TAGACATGCTTATAAGTGTA+GGG | + | tig0017690:161370-161389 | None:intergenic | 30.0% | |
| TTAGACATGCTTATAAGTGT+AGG | + | tig0017690:161371-161390 | None:intergenic | 30.0% | |
| TTAAAAGCTAGCTATCAAAG+GGG | + | tig0017690:161726-161745 | None:intergenic | 30.0% | |
| CTTAAAAGCTAGCTATCAAA+GGG | + | tig0017690:161727-161746 | None:intergenic | 30.0% | |
| !!! | CTTTGATAGCTAGCTTTTAA+GGG | - | tig0017690:161726-161745 | Msa1362020:CDS | 30.0% |
| !! | TTAAGAGAAGTGCTATGATA+GGG | - | tig0017690:161893-161912 | Msa1362020:intron | 30.0% |
| AATACAAAATCCCCCTAATT+TGG | - | tig0017690:162368-162387 | Msa1362020:intron | 30.0% | |
| ATACAAAATCCCCCTAATTT+GGG | - | tig0017690:162369-162388 | Msa1362020:intron | 30.0% | |
| !!! | TTTTGAGTTTCCCCAAATTA+GGG | + | tig0017690:162383-162402 | None:intergenic | 30.0% |
| !!! | ATTTTGAGTTTCCCCAAATT+AGG | + | tig0017690:162384-162403 | None:intergenic | 30.0% |
| !!! | AATTTTTTGGCTCAAGCTAA+AGG | + | tig0017690:162577-162596 | None:intergenic | 30.0% |
| TGTGAATCAAGTCAAATGAT+AGG | + | tig0017690:162873-162892 | None:intergenic | 30.0% | |
| TTTCACTCCTCTATATTACT+TGG | + | tig0017690:163113-163132 | None:intergenic | 30.0% | |
| AAAGATGGAAAATGGATCAA+GGG | + | tig0017690:163175-163194 | None:intergenic | 30.0% | |
| ! | AATAACACTTTGAGAATGGT+TGG | + | tig0017690:163202-163221 | None:intergenic | 30.0% |
| ! | GCAAAATAACACTTTGAGAA+TGG | + | tig0017690:163206-163225 | None:intergenic | 30.0% |
| ! | ACCTCATGAACTTTTCAAAA+GGG | - | tig0017690:163499-163518 | Msa1362020:intron | 30.0% |
| TTTAGTTGTACCTTACCTTT+CGG | - | tig0017690:163582-163601 | Msa1362020:intron | 30.0% | |
| GTATTAAACAGTAACTAGCA+TGG | - | tig0017690:163659-163678 | Msa1362020:intron | 30.0% | |
| ! | AGGTGTGTTTCAATGTTTTT+GGG | + | tig0017690:163912-163931 | None:intergenic | 30.0% |
| ! | TAGGTGTGTTTCAATGTTTT+TGG | + | tig0017690:163913-163932 | None:intergenic | 30.0% |
| AGGGACAAAAGAAATATGTT+AGG | + | tig0017690:163932-163951 | None:intergenic | 30.0% | |
| TTCTTGGTTAGAATACATTC+AGG | - | tig0017690:164103-164122 | Msa1362020:intron | 30.0% | |
| GGTTAACTAACAAAAAATGG+GGG | + | tig0017690:164215-164234 | None:intergenic | 30.0% | |
| ATCAAAATAGCACCACAATA+AGG | + | tig0017690:164304-164323 | None:intergenic | 30.0% | |
| CATTTCTTTCTTCAATTGCT+AGG | + | tig0017690:164443-164462 | None:intergenic | 30.0% | |
| AATCGCTTCTTCTATTACGA+CGG | + | tig0017690:158608-158627 | None:intergenic | 35.0% | |
| GAATTTGGGAATTAGGGTTT+GGG | + | tig0017690:158666-158685 | None:intergenic | 35.0% | |
| AGAATTTGGGAATTAGGGTT+TGG | + | tig0017690:158667-158686 | None:intergenic | 35.0% | |
| ACAGAGAAGGAACAACAATT+TGG | + | tig0017690:158762-158781 | None:intergenic | 35.0% | |
| ACAGAAAAATTACACGGCAA+TGG | + | tig0017690:158807-158826 | None:intergenic | 35.0% | |
| !! | GATATACTTCAAGTGTCGAA+AGG | - | tig0017690:158913-158932 | Msa1362020:CDS | 35.0% |
| GTATCATCCTGATAAGAATC+CGG | - | tig0017690:158984-159003 | Msa1362020:CDS | 35.0% | |
| TATCATCCTGATAAGAATCC+GGG | - | tig0017690:158985-159004 | Msa1362020:CDS | 35.0% | |
| AAATTTGCGGAGATTAGCAA+TGG | - | tig0017690:159027-159046 | Msa1362020:intron | 35.0% | |
| AACTAATCAAGCAAAGGCTA+AGG | + | tig0017690:159589-159608 | None:intergenic | 35.0% | |
| AGCAGTTATAGAAGGCTATT+AGG | - | tig0017690:159737-159756 | Msa1362020:intron | 35.0% | |
| GCAGTTATAGAAGGCTATTA+GGG | - | tig0017690:159738-159757 | Msa1362020:intron | 35.0% | |
| TGCTATGTTCTTGATGTGTA+TGG | - | tig0017690:159915-159934 | Msa1362020:intron | 35.0% | |
| GCTATGTTCTTGATGTGTAT+GGG | - | tig0017690:159916-159935 | Msa1362020:intron | 35.0% | |
| CTATGTTCTTGATGTGTATG+GGG | - | tig0017690:159917-159936 | Msa1362020:intron | 35.0% | |
| GTTTCTTTCAGTTTCTTTGG+CGG | - | tig0017690:160012-160031 | Msa1362020:intron | 35.0% | |
| TTTCTTTCAGTTTCTTTGGC+GGG | - | tig0017690:160013-160032 | Msa1362020:intron | 35.0% | |
| GAAGAAGAGAAAATTGCGAA+AGG | - | tig0017690:160051-160070 | Msa1362020:intron | 35.0% | |
| CACCCATATACAAATCTTCA+AGG | + | tig0017690:160107-160126 | None:intergenic | 35.0% | |
| CTTGAAGATTTGTATATGGG+TGG | - | tig0017690:160105-160124 | Msa1362020:intron | 35.0% | |
| GACACATATATGTTACCCAT+TGG | + | tig0017690:160208-160227 | None:intergenic | 35.0% | |
| TAGATTCGAGACTATCATAC+TGG | - | tig0017690:160307-160326 | Msa1362020:intron | 35.0% | |
| CAACTAAGAAGAACTGCTTT+AGG | - | tig0017690:160440-160459 | Msa1362020:intron | 35.0% | |
| ACTAAGAAGAACTGCTTTAG+GGG | - | tig0017690:160442-160461 | Msa1362020:intron | 35.0% | |
| GGAAATAAAGAATAGCCTCT+GGG | + | tig0017690:160507-160526 | None:intergenic | 35.0% | |
| TGGTGTAGTTGTAAACTAAG+TGG | - | tig0017690:160632-160651 | Msa1362020:intron | 35.0% | |
| ACTTGCGAATTCTACACTTT+GGG | + | tig0017690:160712-160731 | None:intergenic | 35.0% | |
| GTAGAAATGAGGTTTATCAC+AGG | - | tig0017690:160832-160851 | Msa1362020:intron | 35.0% | |
| AGGTTTATCACAGGCAAATT+GGG | - | tig0017690:160841-160860 | Msa1362020:intron | 35.0% | |
| ! | GTCATTTGTTGAAACATTCC+AGG | + | tig0017690:160867-160886 | None:intergenic | 35.0% |
| GCACATAAGGAAAAAAGACA+AGG | + | tig0017690:161083-161102 | None:intergenic | 35.0% | |
| !!! | CTTTTTTCCTTATGTGCTTG+AGG | - | tig0017690:161086-161105 | Msa1362020:intron | 35.0% |
| ! | TTTTTCCTTATGTGCTTGAG+GGG | - | tig0017690:161088-161107 | Msa1362020:intron | 35.0% |
| GTGCTAATGTCAAATACGTA+AGG | - | tig0017690:161208-161227 | Msa1362020:intron | 35.0% | |
| TAATGTCAAATACGTAAGGG+AGG | - | tig0017690:161212-161231 | Msa1362020:intron | 35.0% | |
| AATGTCAAATACGTAAGGGA+GGG | - | tig0017690:161213-161232 | Msa1362020:intron | 35.0% | |
| GTCACTGTTGATATTGAGAA+AGG | - | tig0017690:161243-161262 | Msa1362020:intron | 35.0% | |
| ! | ATTGAGAAAGGCATGAAAGA+TGG | - | tig0017690:161255-161274 | Msa1362020:intron | 35.0% |
| GTGTAGGGCTTATAAGAAAA+TGG | + | tig0017690:161355-161374 | None:intergenic | 35.0% | |
| CCTTAAAAGCTAGCTATCAA+AGG | + | tig0017690:161728-161747 | None:intergenic | 35.0% | |
| !!! | CCTTTGATAGCTAGCTTTTA+AGG | - | tig0017690:161725-161744 | Msa1362020:CDS | 35.0% |
| !! | CTTAAGAGAAGTGCTATGAT+AGG | - | tig0017690:161892-161911 | Msa1362020:intron | 35.0% |
| ATGATAGGGACTTGCATATT+AGG | - | tig0017690:161907-161926 | Msa1362020:intron | 35.0% | |
| TGATAGGGACTTGCATATTA+GGG | - | tig0017690:161908-161927 | Msa1362020:intron | 35.0% | |
| CGTACAATAAACCAAATGGT+GGG | + | tig0017690:161982-162001 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAAGAGGGTA+AGG | + | tig0017690:162008-162027 | None:intergenic | 35.0% | |
| ! | TTACCCTCTTTTTACACAAG+AGG | - | tig0017690:162007-162026 | Msa1362020:intron | 35.0% |
| TTTCCAGGACTTGCATATTA+TGG | - | tig0017690:162053-162072 | Msa1362020:intron | 35.0% | |
| !!! | TGCTTGTTTTAGTCCTTAAG+TGG | - | tig0017690:162140-162159 | Msa1362020:CDS | 35.0% |
| AGCTATGCATATGGTCATTT+GGG | + | tig0017690:162230-162249 | None:intergenic | 35.0% | |
| TCAGTGGTTCTTACTACTTT+AGG | - | tig0017690:162249-162268 | Msa1362020:intron | 35.0% | |
| CAGTGGTTCTTACTACTTTA+GGG | - | tig0017690:162250-162269 | Msa1362020:intron | 35.0% | |
| !! | TTACTACTTTAGGGTCTGTT+TGG | - | tig0017690:162259-162278 | Msa1362020:intron | 35.0% |
| !! | TACTACTTTAGGGTCTGTTT+GGG | - | tig0017690:162260-162279 | Msa1362020:intron | 35.0% |
| TACAAAATCCCCCTAATTTG+GGG | - | tig0017690:162370-162389 | Msa1362020:intron | 35.0% | |
| ! | TTTGAGTTTCCCCAAATTAG+GGG | + | tig0017690:162382-162401 | None:intergenic | 35.0% |
| AAAGGCTCTATTTGGGAATT+TGG | + | tig0017690:162559-162578 | None:intergenic | 35.0% | |
| TCAAGCTAAAGGCTCTATTT+GGG | + | tig0017690:162566-162585 | None:intergenic | 35.0% | |
| ! | AAATTTTCTCAGCTGATCAG+TGG | - | tig0017690:162671-162690 | Msa1362020:intron | 35.0% |
| TGAAGTTTATTAGGCGACAA+GGG | + | tig0017690:162828-162847 | None:intergenic | 35.0% | |
| TTGCAGCTAACTCTATCAAA+TGG | - | tig0017690:162920-162939 | Msa1362020:CDS | 35.0% | |
| TGCAGCTAACTCTATCAAAT+GGG | - | tig0017690:162921-162940 | Msa1362020:CDS | 35.0% | |
| CTAACTCTATCAAATGGGAA+AGG | - | tig0017690:162926-162945 | Msa1362020:CDS | 35.0% | |
| ! | ACGACCTAGCTTCAATTTTA+AGG | - | tig0017690:162976-162995 | Msa1362020:intron | 35.0% |
| ! | CGACCTAGCTTCAATTTTAA+GGG | - | tig0017690:162977-162996 | Msa1362020:intron | 35.0% |
| ACACCCTTAAAATTGAAGCT+AGG | + | tig0017690:162983-163002 | None:intergenic | 35.0% | |
| ! | CCTCTATATTACTTGGTAGT+CGG | + | tig0017690:163106-163125 | None:intergenic | 35.0% |
| ! | TGTGGCATATTCAAAGCTTT+TGG | + | tig0017690:163137-163156 | None:intergenic | 35.0% |
| GGGTAAAAAAGAAAGTAGTG+TGG | + | tig0017690:163155-163174 | None:intergenic | 35.0% | |
| GAAAGATGGAAAATGGATCA+AGG | + | tig0017690:163176-163195 | None:intergenic | 35.0% | |
| TTGGTGAGAAAGATGGAAAA+TGG | + | tig0017690:163183-163202 | None:intergenic | 35.0% | |
| CAATTAGTCAAGTTTCGACT+TGG | + | tig0017690:163277-163296 | None:intergenic | 35.0% | |
| !!! | GCAATTTTTTGTCCTTTCAC+AGG | - | tig0017690:163307-163326 | Msa1362020:intron | 35.0% |
| !!! | ATTTTTTGTCCTTTCACAGG+AGG | - | tig0017690:163310-163329 | Msa1362020:intron | 35.0% |
| CCAGATTCTCCATCAATTAT+GGG | + | tig0017690:163359-163378 | None:intergenic | 35.0% | |
| TCCAGATTCTCCATCAATTA+TGG | + | tig0017690:163360-163379 | None:intergenic | 35.0% | |
| ATGGAGAATCTGGAGATTTA+AGG | - | tig0017690:163366-163385 | Msa1362020:intron | 35.0% | |
| TGGAGAATCTGGAGATTTAA+GGG | - | tig0017690:163367-163386 | Msa1362020:intron | 35.0% | |
| ! | CACCTCATGAACTTTTCAAA+AGG | - | tig0017690:163498-163517 | Msa1362020:intron | 35.0% |
| !! | TCCCTTTTGAAAAGTTCATG+AGG | + | tig0017690:163503-163522 | None:intergenic | 35.0% |
| ! | CATGAACTTTTCAAAAGGGA+AGG | - | tig0017690:163503-163522 | Msa1362020:intron | 35.0% |
| TATCCAAAATCCGAAAGGTA+AGG | + | tig0017690:163595-163614 | None:intergenic | 35.0% | |
| AGTGTTATCCAAAATCCGAA+AGG | + | tig0017690:163600-163619 | None:intergenic | 35.0% | |
| ! | ACACTTGTTGATTGTGCAAA+CGG | - | tig0017690:163697-163716 | Msa1362020:intron | 35.0% |
| ! | ATGTTCATCAAGGTGTTCAA+CGG | + | tig0017690:163816-163835 | None:intergenic | 35.0% |
| TGAACACCTTGATGAACATT+TGG | - | tig0017690:163817-163836 | Msa1362020:intron | 35.0% | |
| TGTCTACCAAATGTTCATCA+AGG | + | tig0017690:163826-163845 | None:intergenic | 35.0% | |
| TCTTCTTTGCTGCTCTTAAT+TGG | - | tig0017690:163871-163890 | Msa1362020:intron | 35.0% | |
| !!! | TGTTTCAATGTTTTTGGGGT+GGG | + | tig0017690:163907-163926 | None:intergenic | 35.0% |
| !! | GGTGTGTTTCAATGTTTTTG+GGG | + | tig0017690:163911-163930 | None:intergenic | 35.0% |
| ! | ACATATTTCTTTTGTCCCTC+AGG | - | tig0017690:163933-163952 | Msa1362020:intron | 35.0% |
| ! | CATATTTCTTTTGTCCCTCA+GGG | - | tig0017690:163934-163953 | Msa1362020:intron | 35.0% |
| TCACAAATCCAAAGCAAGTA+AGG | - | tig0017690:163959-163978 | Msa1362020:CDS | 35.0% | |
| TTGAACTTCCTTACTTGCTT+TGG | + | tig0017690:163970-163989 | None:intergenic | 35.0% | |
| AAGCAAGTAAGGAAGTTCAA+AGG | - | tig0017690:163970-163989 | Msa1362020:CDS | 35.0% | |
| AGCAAGTAAGGAAGTTCAAA+GGG | - | tig0017690:163971-163990 | Msa1362020:CDS | 35.0% | |
| TTCTTTGTGCTCATATGCAA+TGG | + | tig0017690:164006-164025 | None:intergenic | 35.0% | |
| TTGCATATGAGCACAAAGAA+AGG | - | tig0017690:164006-164025 | Msa1362020:CDS | 35.0% | |
| !!! | AGATCTTTACGTCACTTTTG+AGG | - | tig0017690:164029-164048 | Msa1362020:CDS | 35.0% |
| GTCCTCAATGTAACATGATT+AGG | - | tig0017690:164149-164168 | Msa1362020:intron | 35.0% | |
| CACCTAATCATGTTACATTG+AGG | + | tig0017690:164154-164173 | None:intergenic | 35.0% | |
| CTCAATGTAACATGATTAGG+TGG | - | tig0017690:164152-164171 | Msa1362020:intron | 35.0% | |
| TTACAACAAATACACGCCTT+AGG | - | tig0017690:164182-164201 | Msa1362020:intron | 35.0% | |
| !!! | TGTGGTGCTATTTTGATACA+AGG | - | tig0017690:164307-164326 | Msa1362020:five_prime_UTR | 35.0% |
| AAATCCCTGAGATTGCGTTT+CGG | - | tig0017690:158703-158722 | Msa1362020:three_prime_UTR | 40.0% | |
| TTGATGCGCCATTGAAGATT+CGG | + | tig0017690:158735-158754 | None:intergenic | 40.0% | |
| AATAGCATAGAGCACAGAGA+AGG | + | tig0017690:158775-158794 | None:intergenic | 40.0% | |
| TCATTTCCCGGATTCTTATC+AGG | + | tig0017690:158994-159013 | None:intergenic | 40.0% | |
| AGACTGCTTGAAAGAGCTTA+TGG | + | tig0017690:159330-159349 | None:intergenic | 40.0% | |
| !! | GTCAGCATATGAGGTATTGT+CGG | - | tig0017690:159443-159462 | Msa1362020:CDS | 40.0% |
| CTGTAATCGGAACCTTCATA+TGG | - | tig0017690:159780-159799 | Msa1362020:intron | 40.0% | |
| TTCTTTCAGTTTCTTTGGCG+GGG | - | tig0017690:160014-160033 | Msa1362020:intron | 40.0% | |
| ! | CGACGACGTTATTGTTGATT+TGG | - | tig0017690:160074-160093 | Msa1362020:intron | 40.0% |
| GGGAAATAAAGAATAGCCTC+TGG | + | tig0017690:160508-160527 | None:intergenic | 40.0% | |
| GACTTGCGAATTCTACACTT+TGG | + | tig0017690:160713-160732 | None:intergenic | 40.0% | |
| ACGCTGTAACTGTAGAAATG+AGG | - | tig0017690:160821-160840 | Msa1362020:intron | 40.0% | |
| GAGGTTTATCACAGGCAAAT+TGG | - | tig0017690:160840-160859 | Msa1362020:intron | 40.0% | |
| GTTTCAACAAATGACAGAGC+AGG | - | tig0017690:160872-160891 | Msa1362020:intron | 40.0% | |
| GCAGGTAAATATCATCTTCG+AGG | - | tig0017690:160890-160909 | Msa1362020:intron | 40.0% | |
| ! | ATTTTGCCCTGCAAATACAC+TGG | - | tig0017690:160966-160985 | Msa1362020:intron | 40.0% |
| TAGAAGCCAGTGTATTTGCA+GGG | + | tig0017690:160975-160994 | None:intergenic | 40.0% | |
| TATTTACCCTGATAGGGACT+TGG | - | tig0017690:161639-161658 | Msa1362020:intron | 40.0% | |
| TAATAGCCAAGTCCCTATCA+GGG | + | tig0017690:161648-161667 | None:intergenic | 40.0% | |
| ATGCGATGCTCTAATTAGCT+TGG | - | tig0017690:161696-161715 | Msa1362020:intron | 40.0% | |
| TCATAAGCACTCAAGCACTT+GGG | + | tig0017690:161765-161784 | None:intergenic | 40.0% | |
| TTCATAAGCACTCAAGCACT+TGG | + | tig0017690:161766-161785 | None:intergenic | 40.0% | |
| GTGCTTGAGTGCTTATGAAA+TGG | - | tig0017690:161767-161786 | Msa1362020:CDS | 40.0% | |
| AGTGCTTATGAAATGGTACC+TGG | - | tig0017690:161774-161793 | Msa1362020:CDS | 40.0% | |
| GTGCTTATGAAATGGTACCT+GGG | - | tig0017690:161775-161794 | Msa1362020:CDS | 40.0% | |
| ATATGGAAGAGACACCAGAA+AGG | - | tig0017690:161826-161845 | Msa1362020:intron | 40.0% | |
| TTAAGTGCCAAACGACTCAA+TGG | + | tig0017690:161877-161896 | None:intergenic | 40.0% | |
| GCGTACAATAAACCAAATGG+TGG | + | tig0017690:161983-162002 | None:intergenic | 40.0% | |
| GCTGCGTACAATAAACCAAA+TGG | + | tig0017690:161986-162005 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAGA+GGG | + | tig0017690:162013-162032 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAG+AGG | + | tig0017690:162014-162033 | None:intergenic | 40.0% | |
| ATATGCAAGTCCTGGAAACA+GGG | + | tig0017690:162051-162070 | None:intergenic | 40.0% | |
| AATATGCAAGTCCTGGAAAC+AGG | + | tig0017690:162052-162071 | None:intergenic | 40.0% | |
| ACTCCATAATATGCAAGTCC+TGG | + | tig0017690:162059-162078 | None:intergenic | 40.0% | |
| !! | GTTTTAGTCCTTAAGTGGCT+TGG | - | tig0017690:162145-162164 | Msa1362020:CDS | 40.0% |
| GAGCTATGCATATGGTCATT+TGG | + | tig0017690:162231-162250 | None:intergenic | 40.0% | |
| !! | ACTACTTTAGGGTCTGTTTG+GGG | - | tig0017690:162261-162280 | Msa1362020:intron | 40.0% |
| TTGAGTTTCCCCAAATTAGG+GGG | + | tig0017690:162381-162400 | None:intergenic | 40.0% | |
| ATTTGGGAATTTGGAGGGAA+GGG | + | tig0017690:162550-162569 | None:intergenic | 40.0% | |
| TATTTGGGAATTTGGAGGGA+AGG | + | tig0017690:162551-162570 | None:intergenic | 40.0% | |
| GCTCTATTTGGGAATTTGGA+GGG | + | tig0017690:162555-162574 | None:intergenic | 40.0% | |
| CTCAAGCTAAAGGCTCTATT+TGG | + | tig0017690:162567-162586 | None:intergenic | 40.0% | |
| GTGAAGTTTATTAGGCGACA+AGG | + | tig0017690:162829-162848 | None:intergenic | 40.0% | |
| CCGACTACCAAGTAATATAG+AGG | - | tig0017690:163103-163122 | Msa1362020:intron | 40.0% | |
| !! | AGAATGGTTGGTGAGAAAGA+TGG | + | tig0017690:163190-163209 | None:intergenic | 40.0% |
| AAAATAGCACCTCCTGTGAA+AGG | + | tig0017690:163322-163341 | None:intergenic | 40.0% | |
| !!! | ACAGGAGGTGCTATTTTATG+AGG | - | tig0017690:163325-163344 | Msa1362020:intron | 40.0% |
| !!! | GAGGTGCTATTTTATGAGGA+CGG | - | tig0017690:163329-163348 | Msa1362020:intron | 40.0% |
| CCCATAATTGATGGAGAATC+TGG | - | tig0017690:163356-163375 | Msa1362020:intron | 40.0% | |
| CACGCTGGTAAGTATAATCA+TGG | - | tig0017690:163553-163572 | Msa1362020:intron | 40.0% | |
| ! | GTACCTTACCTTTCGGATTT+TGG | - | tig0017690:163589-163608 | Msa1362020:intron | 40.0% |
| AGTAACTAGCATGGAAGAGT+TGG | - | tig0017690:163668-163687 | Msa1362020:intron | 40.0% | |
| GTGTAACCTTGATCTCCTTT+AGG | - | tig0017690:163763-163782 | Msa1362020:intron | 40.0% | |
| CTTGAACCTAAAGGAGATCA+AGG | + | tig0017690:163772-163791 | None:intergenic | 40.0% | |
| CAACAAGAGCTTGAACCTAA+AGG | + | tig0017690:163781-163800 | None:intergenic | 40.0% | |
| ! | CTTTAGGTTCAAGCTCTTGT+TGG | - | tig0017690:163779-163798 | Msa1362020:intron | 40.0% |
| TTTGGTAGACATAAGCTCGA+AGG | - | tig0017690:163835-163854 | Msa1362020:intron | 40.0% | |
| !!! | GTGTTTCAATGTTTTTGGGG+TGG | + | tig0017690:163908-163927 | None:intergenic | 40.0% |
| TTGGATTTGTGATTCCCTGA+GGG | + | tig0017690:163951-163970 | None:intergenic | 40.0% | |
| TTTGGATTTGTGATTCCCTG+AGG | + | tig0017690:163952-163971 | None:intergenic | 40.0% | |
| GCAAGTAAGGAAGTTCAAAG+GGG | - | tig0017690:163972-163991 | Msa1362020:CDS | 40.0% | |
| ! | TGGTTTTCATCTTGTGAGCA+AGG | - | tig0017690:164389-164408 | Msa1362020:five_prime_UTR | 40.0% |
| ACTCCATAGTCAAGTCTTCG+CGG | - | tig0017690:158548-158567 | Msa1362020:three_prime_UTR | 45.0% | |
| TTTCCGCGAAGACTTGACTA+TGG | + | tig0017690:158554-158573 | None:intergenic | 45.0% | |
| ! | ACGGAAGCTTTTACAGTGAC+AGG | + | tig0017690:158589-158608 | None:intergenic | 45.0% |
| CTCAGGGATTTCGATGTGAT+TGG | + | tig0017690:158694-158713 | None:intergenic | 45.0% | |
| GGAGAGATCCGAATCTTCAA+TGG | - | tig0017690:158724-158743 | Msa1362020:three_prime_UTR | 45.0% | |
| !! | TCAAGTGTCGAAAGGTGCAT+CGG | - | tig0017690:158921-158940 | Msa1362020:CDS | 45.0% |
| AGCTATATTAGGGGGGGTTA+TGG | - | tig0017690:159262-159281 | Msa1362020:intron | 45.0% | |
| !!! | GGGTTCTGGACTTGCTTTTA+TGG | - | tig0017690:159970-159989 | Msa1362020:intron | 45.0% |
| TCTTTCAGTTTCTTTGGCGG+GGG | - | tig0017690:160015-160034 | Msa1362020:intron | 45.0% | |
| GTATATGGGTGGTTCCTTGA+AGG | - | tig0017690:160116-160135 | Msa1362020:intron | 45.0% | |
| TAAATGTGACCGCACCTTCA+AGG | + | tig0017690:160133-160152 | None:intergenic | 45.0% | |
| CTGACATCATGTATTCCCAG+AGG | - | tig0017690:160489-160508 | Msa1362020:intron | 45.0% | |
| AATGTTGTAAAGCCAGCTCC+TGG | - | tig0017690:160792-160811 | Msa1362020:intron | 45.0% | |
| ! | CAGTTACAGCGTCTTTTTCC+AGG | + | tig0017690:160813-160832 | None:intergenic | 45.0% |
| CTAGAAGCCAGTGTATTTGC+AGG | + | tig0017690:160976-160995 | None:intergenic | 45.0% | |
| TGTGTGATATCTACCTGTCC+AGG | - | tig0017690:161173-161192 | Msa1362020:intron | 45.0% | |
| TAGCACATTGATCACAGACC+TGG | + | tig0017690:161194-161213 | None:intergenic | 45.0% | |
| GTAATAGCCAAGTCCCTATC+AGG | + | tig0017690:161649-161668 | None:intergenic | 45.0% | |
| GATAGGGACTTGGCTATTAC+TGG | - | tig0017690:161649-161668 | Msa1362020:intron | 45.0% | |
| AAAGCTAGCTATCAAAGGGG+AGG | + | tig0017690:161723-161742 | None:intergenic | 45.0% | |
| TTATGAAATGGTACCTGGGC+AGG | - | tig0017690:161779-161798 | Msa1362020:CDS | 45.0% | |
| AGTGCATCCATTGAGTCGTT+TGG | - | tig0017690:161867-161886 | Msa1362020:intron | 45.0% | |
| ACTTGCATATTAGGGCAACC+CGG | - | tig0017690:161916-161935 | Msa1362020:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | tig0017690:162018-162037 | Msa1362020:intron | 45.0% |
| GGGAAAAACCAAGCCACTTA+AGG | + | tig0017690:162156-162175 | None:intergenic | 45.0% | |
| !!! | AAGTGGCTTGGTTTTTCCCA+TGG | - | tig0017690:162157-162176 | Msa1362020:CDS | 45.0% |
| !!! | TCCCATGGCAGCTAGTTTTA+CGG | - | tig0017690:162172-162191 | Msa1362020:CDS | 45.0% |
| TGACCATATGCATAGCTCAG+TGG | - | tig0017690:162233-162252 | Msa1362020:intron | 45.0% | |
| GAACCACTGAGCTATGCATA+TGG | + | tig0017690:162239-162258 | None:intergenic | 45.0% | |
| !! | CTACTTTAGGGTCTGTTTGG+GGG | - | tig0017690:162262-162281 | Msa1362020:intron | 45.0% |
| ! | TCTGTTTGGGGGTTTAGGAT+TGG | - | tig0017690:162273-162292 | Msa1362020:intron | 45.0% |
| ! | TTTGGGGGTTTAGGATTGGA+GGG | - | tig0017690:162277-162296 | Msa1362020:intron | 45.0% |
| !!! | AAGGAATGGAGGGTTTTAGG+AGG | - | tig0017690:162315-162334 | Msa1362020:intron | 45.0% |
| !!! | AATGGAGGGTTTTAGGAGGA+AGG | - | tig0017690:162319-162338 | Msa1362020:intron | 45.0% |
| !!! | ATGGAGGGTTTTAGGAGGAA+GGG | - | tig0017690:162320-162339 | Msa1362020:intron | 45.0% |
| !!! | GTTTTAGGAGGAAGGGCTTT+GGG | - | tig0017690:162327-162346 | Msa1362020:intron | 45.0% |
| !! | TTTTAGGAGGAAGGGCTTTG+GGG | - | tig0017690:162328-162347 | Msa1362020:intron | 45.0% |
| TTTGGGAATTTGGAGGGAAG+GGG | + | tig0017690:162549-162568 | None:intergenic | 45.0% | |
| GGCTCTATTTGGGAATTTGG+AGG | + | tig0017690:162556-162575 | None:intergenic | 45.0% | |
| ACACGGTTGCTCATGTTCTT+GGG | + | tig0017690:162804-162823 | None:intergenic | 45.0% | |
| AACACGGTTGCTCATGTTCT+TGG | + | tig0017690:162805-162824 | None:intergenic | 45.0% | |
| TATTAGGCGACAAGGGAACA+CGG | + | tig0017690:162821-162840 | None:intergenic | 45.0% | |
| GTCGGAACTGATGTCAAACA+AGG | + | tig0017690:163088-163107 | None:intergenic | 45.0% | |
| !! | AAAGTTCATGAGGTGCTGTG+CGG | + | tig0017690:163493-163512 | None:intergenic | 45.0% |
| AGTAAGGAAGTTCAAAGGGG+AGG | - | tig0017690:163975-163994 | Msa1362020:CDS | 45.0% | |
| GTAAGGAAGTTCAAAGGGGA+GGG | - | tig0017690:163976-163995 | Msa1362020:CDS | 45.0% | |
| TTTCTGTTCCTCCGATAGTG+AGG | + | tig0017690:164067-164086 | None:intergenic | 45.0% | |
| GCATCTACTGTGATCCTTGT+CGG | - | tig0017690:164268-164287 | Msa1362020:five_prime_UTR | 45.0% | |
| ! | AGCTTGCTTTGTGTCTGCAA+TGG | - | tig0017690:164369-164388 | Msa1362020:five_prime_UTR | 45.0% |
| CATCTTGTGAGCAAGGTGAA+AGG | - | tig0017690:164396-164415 | Msa1362020:five_prime_UTR | 45.0% | |
| !! | AAATAAATATTATAATTGTT+GGG | + | tig0017690:161624-161643 | None:intergenic | 5.0% |
| !! | TAAATAAATATTATAATTGT+TGG | + | tig0017690:161625-161644 | None:intergenic | 5.0% |
| !! | AATTTAATAATATCAATAAA+AGG | + | tig0017690:162656-162675 | None:intergenic | 5.0% |
| TATGGAGTCGACACTACGCT+AGG | + | tig0017690:158536-158555 | None:intergenic | 50.0% | |
| ! | AGCTTTTACAGTGACAGGCG+TGG | + | tig0017690:158584-158603 | None:intergenic | 50.0% |
| CTCTCCGAAACGCAATCTCA+GGG | + | tig0017690:158710-158729 | None:intergenic | 50.0% | |
| TCTCTCCGAAACGCAATCTC+AGG | + | tig0017690:158711-158730 | None:intergenic | 50.0% | |
| GTTGCTGCTGTCAGCATATG+AGG | - | tig0017690:159434-159453 | Msa1362020:intron | 50.0% | |
| !! | AGGTGGTGGAATGAACATGC+AGG | - | tig0017690:159539-159558 | Msa1362020:intron | 50.0% |
| TCTTGATGTGTATGGGGCTC+TGG | - | tig0017690:159923-159942 | Msa1362020:intron | 50.0% | |
| TTTCTTTGGCGGGGGATCAA+TGG | - | tig0017690:160023-160042 | Msa1362020:intron | 50.0% | |
| !!! | ACTGGTTTTCACGTGACACG+CGG | - | tig0017690:160325-160344 | Msa1362020:intron | 50.0% |
| TATCACAGGCAAATTGGGCC+TGG | - | tig0017690:160846-160865 | Msa1362020:intron | 50.0% | |
| CTTATGTGCTTGAGGGGACT+GGG | - | tig0017690:161094-161113 | Msa1362020:intron | 50.0% | |
| TTATGTGCTTGAGGGGACTG+GGG | - | tig0017690:161095-161114 | Msa1362020:intron | 50.0% | |
| CATTGATCACAGACCTGGAC+AGG | + | tig0017690:161189-161208 | None:intergenic | 50.0% | |
| ! | GAAAGGCATGAAAGATGGCC+AGG | - | tig0017690:161260-161279 | Msa1362020:intron | 50.0% |
| CACTCAAGCACTTGGGAGTT+GGG | + | tig0017690:161758-161777 | None:intergenic | 50.0% | |
| ATTGAAGCTCCCGCATATGC+AGG | - | tig0017690:161942-161961 | Msa1362020:intron | 50.0% | |
| TTGAAGCTCCCGCATATGCA+GGG | - | tig0017690:161943-161962 | Msa1362020:intron | 50.0% | |
| TGGAAACAGGGTTCAAGTCC+TGG | + | tig0017690:162039-162058 | None:intergenic | 50.0% | |
| AGGACTTGAACCCTGTTTCC+AGG | - | tig0017690:162038-162057 | Msa1362020:intron | 50.0% | |
| CCCGTAAAACTAGCTGCCAT+GGG | + | tig0017690:162176-162195 | None:intergenic | 50.0% | |
| !!! | CCCATGGCAGCTAGTTTTAC+GGG | - | tig0017690:162173-162192 | Msa1362020:CDS | 50.0% |
| TCCCGTAAAACTAGCTGCCA+TGG | + | tig0017690:162177-162196 | None:intergenic | 50.0% | |
| !!! | ATGGCAGCTAGTTTTACGGG+AGG | - | tig0017690:162176-162195 | Msa1362020:CDS | 50.0% |
| !!! | TGGCAGCTAGTTTTACGGGA+GGG | - | tig0017690:162177-162196 | Msa1362020:CDS | 50.0% |
| ATTCAGCACCCCAAGCATGT+GGG | + | tig0017690:162205-162224 | None:intergenic | 50.0% | |
| AATTCAGCACCCCAAGCATG+TGG | + | tig0017690:162206-162225 | None:intergenic | 50.0% | |
| TAGGGTCTGTTTGGGGGTTT+AGG | - | tig0017690:162268-162287 | Msa1362020:intron | 50.0% | |
| ! | GTTTGGGGGTTTAGGATTGG+AGG | - | tig0017690:162276-162295 | Msa1362020:intron | 50.0% |
| ! | TTGGGGGTTTAGGATTGGAG+GGG | - | tig0017690:162278-162297 | Msa1362020:intron | 50.0% |
| AGGACGTTAAGCGGAAGGAA+TGG | - | tig0017690:162301-162320 | Msa1362020:intron | 50.0% | |
| ACGTTAAGCGGAAGGAATGG+AGG | - | tig0017690:162304-162323 | Msa1362020:intron | 50.0% | |
| CGTTAAGCGGAAGGAATGGA+GGG | - | tig0017690:162305-162324 | Msa1362020:intron | 50.0% | |
| ! | CGGAAGGAATGGAGGGTTTT+AGG | - | tig0017690:162312-162331 | Msa1362020:intron | 50.0% |
| !!! | GGTTTTAGGAGGAAGGGCTT+TGG | - | tig0017690:162326-162345 | Msa1362020:intron | 50.0% |
| TCTGTTCCCCACCTCACTAT+CGG | - | tig0017690:164053-164072 | Msa1362020:CDS | 50.0% | |
| TGTTCCTCCGATAGTGAGGT+GGG | + | tig0017690:164063-164082 | None:intergenic | 50.0% | |
| ! | GGCACATGAGTGCCTTATTG+TGG | - | tig0017690:164289-164308 | Msa1362020:five_prime_UTR | 50.0% |
| TGGGTGGTTCCTTGAAGGTG+CGG | - | tig0017690:160121-160140 | Msa1362020:intron | 55.0% | |
| ! | CAGCGTCTTTTTCCAGGAGC+TGG | + | tig0017690:160807-160826 | None:intergenic | 55.0% |
| CCAGTCCCCTCAAGCACATA+AGG | + | tig0017690:161096-161115 | None:intergenic | 55.0% | |
| CCTTATGTGCTTGAGGGGAC+TGG | - | tig0017690:161093-161112 | Msa1362020:intron | 55.0% | |
| GCACTCAAGCACTTGGGAGT+TGG | + | tig0017690:161759-161778 | None:intergenic | 55.0% | |
| AAGACACTGGAAACCTGCCC+AGG | + | tig0017690:161795-161814 | None:intergenic | 55.0% | |
| AACGCTCGACTCAGCCTTTC+TGG | + | tig0017690:161843-161862 | None:intergenic | 55.0% | |
| ATGCGGGAGCTTCAATGCAC+CGG | + | tig0017690:161938-161957 | None:intergenic | 55.0% | |
| TTGGAGGGGAGGACGTTAAG+CGG | - | tig0017690:162292-162311 | Msa1362020:intron | 55.0% | |
| GGAATTTGGAGGGAAGGGGA+GGG | + | tig0017690:162545-162564 | None:intergenic | 55.0% | |
| GACGGCGAGCCCATAATTGA+TGG | - | tig0017690:163347-163366 | Msa1362020:intron | 55.0% | |
| CACGACTGTCACTATCACGC+TGG | - | tig0017690:163538-163557 | Msa1362020:intron | 55.0% | |
| GTTCCTCCGATAGTGAGGTG+GGG | + | tig0017690:164062-164081 | None:intergenic | 55.0% | |
| CTGTTCCTCCGATAGTGAGG+TGG | + | tig0017690:164064-164083 | None:intergenic | 55.0% | |
| AAATGGGGGCGAGAAGCCTA+AGG | + | tig0017690:164201-164220 | None:intergenic | 55.0% | |
| ! | AAGGCACTCATGTGCCGACA+AGG | + | tig0017690:164285-164304 | None:intergenic | 55.0% |
| ! | GGTTTGAAGCAGCATGCCGC+TGG | - | tig0017690:159507-159526 | Msa1362020:intron | 60.0% |
| TTGAAGCAGCATGCCGCTGG+TGG | - | tig0017690:159510-159529 | Msa1362020:intron | 60.0% | |
| ACCACCTCTTCCTCCACCAG+CGG | + | tig0017690:159526-159545 | None:intergenic | 60.0% | |
| CTTTGGCGGGGGATCAATGG+AGG | - | tig0017690:160026-160045 | Msa1362020:intron | 60.0% | |
| TTGAGGGGACTGGGGTGTGA+AGG | - | tig0017690:161103-161122 | Msa1362020:intron | 60.0% | |
| TGCGGGAGCTTCAATGCACC+GGG | + | tig0017690:161937-161956 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | tig0017690:161954-161973 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | tig0017690:161955-161974 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | tig0017690:161954-161973 | Msa1362020:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | tig0017690:161955-161974 | Msa1362020:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | tig0017690:161970-161989 | None:intergenic | 60.0% |
| GGGAGGGTTCCCACATGCTT+GGG | - | tig0017690:162193-162212 | Msa1362020:CDS | 60.0% | |
| GGAGGGTTCCCACATGCTTG+GGG | - | tig0017690:162194-162213 | Msa1362020:CDS | 60.0% | |
| ! | GGGGTTTAGGATTGGAGGGG+AGG | - | tig0017690:162281-162300 | Msa1362020:intron | 60.0% |
| AGGGGAGGACGTTAAGCGGA+AGG | - | tig0017690:162296-162315 | Msa1362020:intron | 60.0% | |
| GGGAATTTGGAGGGAAGGGG+AGG | + | tig0017690:162546-162565 | None:intergenic | 60.0% | |
| GTTCCCCACCTCACTATCGG+AGG | - | tig0017690:164056-164075 | Msa1362020:CDS | 60.0% | |
| AAGCAGCATGCCGCTGGTGG+AGG | - | tig0017690:159513-159532 | Msa1362020:intron | 65.0% | |
| CATGCCGCTGGTGGAGGAAG+AGG | - | tig0017690:159519-159538 | Msa1362020:intron | 65.0% | |
| GCTGGTGGAGGAAGAGGTGG+TGG | - | tig0017690:159525-159544 | Msa1362020:intron | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | tig0017690:161948-161967 | Msa1362020:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | tig0017690:161949-161968 | Msa1362020:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | tig0017690:161953-161972 | Msa1362020:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | tig0017690:161968-161987 | Msa1362020:intron | 65.0% | |
| CGGGAGGGTTCCCACATGCT+TGG | - | tig0017690:162192-162211 | Msa1362020:CDS | 65.0% | |
| !! | AGGGGAGGGCTTTGGGGGAT+TGG | + | tig0017690:162531-162550 | None:intergenic | 65.0% |
| ! | AGGGAAGGGGAGGGCTTTGG+GGG | + | tig0017690:162536-162555 | None:intergenic | 65.0% |
| GAGGGAAGGGGAGGGCTTTG+GGG | + | tig0017690:162537-162556 | None:intergenic | 65.0% | |
| GGAGGGAAGGGGAGGGCTTT+GGG | + | tig0017690:162538-162557 | None:intergenic | 65.0% | |
| TGGAGGGAAGGGGAGGGCTT+TGG | + | tig0017690:162539-162558 | None:intergenic | 65.0% | |
| GCCGCTGGTGGAGGAAGAGG+TGG | - | tig0017690:159522-159541 | Msa1362020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017690 | gene | 158487 | 164513 | 158487 | ID=Msa1362020;Name=Msa1362020 |
| tig0017690 | mRNA | 158487 | 164513 | 158487 | ID=Msa1362020-mRNA-1;Parent=Msa1362020;Name=Msa1362020-mRNA-1;_AED=0.14;_eAED=0.14;_QI=256|0.88|0.9|1|1|1|10|400|325 |
| tig0017690 | exon | 158487 | 159045 | 158487 | ID=Msa1362020-mRNA-1:exon:12792;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 159144 | 159215 | 159144 | ID=Msa1362020-mRNA-1:exon:12791;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 159441 | 159518 | 159441 | ID=Msa1362020-mRNA-1:exon:12790;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 159612 | 159671 | 159612 | ID=Msa1362020-mRNA-1:exon:12789;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 161719 | 161805 | 161719 | ID=Msa1362020-mRNA-1:exon:12788;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 162107 | 162223 | 162107 | ID=Msa1362020-mRNA-1:exon:12787;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 162863 | 162977 | 162863 | ID=Msa1362020-mRNA-1:exon:12786;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 163426 | 163495 | 163426 | ID=Msa1362020-mRNA-1:exon:12785;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 163952 | 164100 | 163952 | ID=Msa1362020-mRNA-1:exon:12784;Parent=Msa1362020-mRNA-1 |
| tig0017690 | exon | 164187 | 164513 | 164187 | ID=Msa1362020-mRNA-1:exon:12783;Parent=Msa1362020-mRNA-1 |
| tig0017690 | five_prime_UTR | 164258 | 164513 | 164258 | ID=Msa1362020-mRNA-1:five_prime_utr;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 164187 | 164257 | 164187 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 163952 | 164100 | 163952 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 163426 | 163495 | 163426 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 162863 | 162977 | 162863 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 162107 | 162223 | 162107 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 161719 | 161805 | 161719 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 159612 | 159671 | 159612 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 159441 | 159518 | 159441 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 159144 | 159215 | 159144 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | CDS | 158887 | 159045 | 158887 | ID=Msa1362020-mRNA-1:cds;Parent=Msa1362020-mRNA-1 |
| tig0017690 | three_prime_UTR | 158487 | 158886 | 158487 | ID=Msa1362020-mRNA-1:three_prime_utr;Parent=Msa1362020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
