Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547180 | XP_013456007.1 | 97.252 | 473 | 13 | 0 | 1 | 473 | 1 | 473 | 0.0 | 935 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547180 | sp|Q9SKN2|DRB2_ARATH | 69.722 | 360 | 87 | 7 | 1 | 343 | 1 | 355 | 2.36e-164 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547180 | A0A072ULT8 | 97.252 | 473 | 13 | 0 | 1 | 473 | 1 | 473 | 0.0 | 935 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0417150 | Msa0547180 | -0.810957 | 8.902718e-51 | -8.615850e-47 |
| Msa0420800 | Msa0547180 | -0.802531 | 5.368034e-49 | -8.615850e-47 |
| Msa0547180 | Msa0682710 | 0.939923 | 5.609831e-100 | -8.615850e-47 |
| Msa0547180 | Msa0776290 | -0.811474 | 6.876317e-51 | -8.615850e-47 |
| Msa0547180 | Msa0899700 | -0.803868 | 2.839113e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547180 | MtrunA17_Chr4g0029001 | 97.252 | 473 | 13 | 0 | 1 | 473 | 1 | 473 | 0.0 | 935 |
| Msa0547180 | MtrunA17_Chr2g0326721 | 75.443 | 395 | 71 | 8 | 1 | 377 | 1 | 387 | 0.0 | 560 |
| Msa0547180 | MtrunA17_Chr7g0273611 | 72.611 | 157 | 43 | 0 | 1 | 157 | 1 | 157 | 6.41e-78 | 251 |
| Msa0547180 | MtrunA17_Chr6g0461131 | 45.783 | 166 | 78 | 3 | 1 | 163 | 158 | 314 | 2.30e-34 | 135 |
| Msa0547180 | MtrunA17_Chr6g0456181 | 50.000 | 122 | 54 | 1 | 32 | 153 | 2 | 116 | 1.71e-25 | 100 |
| Msa0547180 | MtrunA17_Chr3g0132821 | 37.500 | 152 | 93 | 1 | 1 | 150 | 16 | 167 | 1.04e-21 | 98.6 |
| Msa0547180 | MtrunA17_Chr3g0118941 | 36.364 | 154 | 85 | 2 | 7 | 160 | 113 | 253 | 5.33e-20 | 91.7 |
| Msa0547180 | MtrunA17_Chr3g0118921 | 35.897 | 156 | 91 | 3 | 3 | 158 | 50 | 196 | 1.50e-18 | 86.3 |
| Msa0547180 | MtrunA17_Chr4g0002041 | 32.468 | 154 | 98 | 5 | 2 | 153 | 28 | 177 | 1.19e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547180 | AT2G28380.1 | 69.722 | 360 | 87 | 7 | 1 | 343 | 1 | 355 | 2.40e-165 | 474 |
| Msa0547180 | AT5G41070.1 | 70.899 | 189 | 48 | 1 | 1 | 189 | 1 | 182 | 9.90e-89 | 276 |
| Msa0547180 | AT3G26932.1 | 69.312 | 189 | 52 | 1 | 1 | 189 | 1 | 183 | 1.55e-87 | 272 |
| Msa0547180 | AT3G26932.2 | 69.312 | 189 | 52 | 1 | 1 | 189 | 1 | 183 | 1.55e-87 | 272 |
| Msa0547180 | AT3G62800.2 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.47e-35 | 135 |
| Msa0547180 | AT3G62800.1 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.47e-35 | 135 |
| Msa0547180 | AT3G62800.3 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.60e-35 | 134 |
| Msa0547180 | AT3G26932.3 | 56.075 | 107 | 41 | 1 | 83 | 189 | 25 | 125 | 3.34e-30 | 119 |
| Msa0547180 | AT1G09700.2 | 36.774 | 155 | 97 | 1 | 1 | 154 | 15 | 169 | 9.06e-22 | 95.5 |
| Msa0547180 | AT1G09700.1 | 36.774 | 155 | 97 | 1 | 1 | 154 | 15 | 169 | 3.93e-21 | 95.9 |
Find 145 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTTGTTTCTTATTCT+TGG | 0.064318 | 4_1:+39959415 | None:intergenic |
| GCTCCTGCAGCAGGGAATTT+AGG | 0.172441 | 4_1:+39957805 | None:intergenic |
| CGACGGGTCCATCGGCTTTC+TGG | 0.173751 | 4_1:+39957829 | None:intergenic |
| GGGGACACTGCGGCTGGTGG+CGG | 0.272028 | 4_1:+39957691 | None:intergenic |
| TGCTGGAATATTCTCAGTTT+TGG | 0.276286 | 4_1:+39957249 | None:intergenic |
| CTGCTGGCTGACGCCGTTGC+GGG | 0.279138 | 4_1:+39957889 | None:intergenic |
| GGTACAGATCCGATCCGTTT+TGG | 0.280569 | 4_1:+39961034 | None:intergenic |
| GGTCGGGTTGGAATGTTTAA+AGG | 0.290618 | 4_1:+39961063 | None:intergenic |
| TGCTTCGAGGTGATGTCTTT+TGG | 0.292647 | 4_1:+39957917 | None:intergenic |
| GGGACACTGCGGCTGGTGGC+GGG | 0.293035 | 4_1:+39957692 | None:intergenic |
| CCAACTTTGCTGACGGTAAC+AGG | 0.305627 | 4_1:+39957430 | None:intergenic |
| ATTGCATTCCTTATGGTAAC+TGG | 0.309636 | 4_1:+39957727 | None:intergenic |
| TGCCGCAGTACACAACTTTC+CGG | 0.311185 | 4_1:-39959511 | Msa0547180:CDS |
| CTCCTGCAGCAGGGAATTTA+GGG | 0.324666 | 4_1:+39957806 | None:intergenic |
| GGTTGAGGGCTGGTTGGCCT+TGG | 0.328316 | 4_1:+39957976 | None:intergenic |
| GGAAATGAAATCATAGCATT+TGG | 0.335358 | 4_1:+39958021 | None:intergenic |
| AAAGCTACCGTTAACTTTAA+CGG | 0.356873 | 4_1:-39960844 | Msa0547180:CDS |
| TACAGGTATTGCATTCCTTA+TGG | 0.359904 | 4_1:+39957720 | None:intergenic |
| GGAAGAATCTTTGATGTTGC+TGG | 0.369008 | 4_1:+39957949 | None:intergenic |
| TCTGCACCACTAGTTGGTGC+TGG | 0.373760 | 4_1:+39957283 | None:intergenic |
| GGACACTGCGGCTGGTGGCG+GGG | 0.375345 | 4_1:+39957693 | None:intergenic |
| ATGAATGAAGCTGGCAGAAC+AGG | 0.397708 | 4_1:+39957011 | None:intergenic |
| TTTGTGCCAGCTCTTGTAGC+TGG | 0.402118 | 4_1:+39960932 | None:intergenic |
| GATCTCGCCGTTAAAGTTAA+CGG | 0.411163 | 4_1:+39960837 | None:intergenic |
| TTGAACCGCGGCGCGTGATC+AGG | 0.411390 | 4_1:+39960865 | None:intergenic |
| TGCACTGTTTCAGATTCTGC+TGG | 0.412381 | 4_1:+39957232 | None:intergenic |
| ATAGGAACAGGTTCGTCTAC+TGG | 0.413046 | 4_1:+39957373 | None:intergenic |
| ACAGGTTCATCTATTATAAC+TGG | 0.414112 | 4_1:+39957448 | None:intergenic |
| ACAGGTTCGTCTACTGGAAT+TGG | 0.418444 | 4_1:+39957379 | None:intergenic |
| TGCAAGCTCTTCAACTGAAC+CGG | 0.422266 | 4_1:-39958127 | Msa0547180:CDS |
| TCATCTTTGCTGATAGGAAC+AGG | 0.424802 | 4_1:+39957361 | None:intergenic |
| GGTGGAGCAGCAGCATATAC+TGG | 0.428606 | 4_1:+39957607 | None:intergenic |
| CGCCCTAAATTCCCTGCTGC+AGG | 0.431001 | 4_1:-39957808 | Msa0547180:CDS |
| ACAACTTTCCGGTCAGGCTT+AGG | 0.437320 | 4_1:-39959500 | Msa0547180:CDS |
| CTTCAGACGGTAATTCAGTA+AGG | 0.439084 | 4_1:+39958065 | None:intergenic |
| ATGAGTAATGTAATAGTTGA+AGG | 0.440004 | 4_1:-39957148 | Msa0547180:three_prime_UTR |
| AAGAAATTGCACAAAGGGTA+GGG | 0.440702 | 4_1:-39959541 | Msa0547180:CDS |
| GCTGGATCATCTTTGCTGAT+AGG | 0.442655 | 4_1:+39957355 | None:intergenic |
| GCTGGTGGCGGGGAGAATAC+AGG | 0.442744 | 4_1:+39957703 | None:intergenic |
| TAAGGTGCTGCTCCTGCAGC+AGG | 0.445437 | 4_1:+39957796 | None:intergenic |
| AATTAGCTTCAGAGGAATCA+TGG | 0.446861 | 4_1:+39961112 | None:intergenic |
| GATGTTGCTGGTCGAGGTTG+AGG | 0.454441 | 4_1:+39957961 | None:intergenic |
| CTGCTTGCCGAATATTGATC+GGG | 0.455818 | 4_1:+39957632 | None:intergenic |
| TCGACTTTACTGATGGGAAC+AGG | 0.461334 | 4_1:+39957499 | None:intergenic |
| CCTGTTACCGTCAGCAAAGT+TGG | 0.461686 | 4_1:-39957430 | Msa0547180:CDS |
| GGAAACTTTGGTTGCTATGT+AGG | 0.464305 | 4_1:+39961087 | None:intergenic |
| TCCAGTTCGTCATTGTTCTC+CGG | 0.465341 | 4_1:+39958108 | None:intergenic |
| ATCTTTGATGTTGCTGGTCG+AGG | 0.467209 | 4_1:+39957955 | None:intergenic |
| ACCGGTACGGTGGAATTAGC+TGG | 0.468526 | 4_1:-39959461 | Msa0547180:CDS |
| TCCACCGTACCGGTGAAAAC+AGG | 0.472510 | 4_1:+39959470 | None:intergenic |
| CTTACAAGAAATTGCACAAA+GGG | 0.473469 | 4_1:-39959546 | Msa0547180:CDS |
| ACCGGAGAACAATGACGAAC+TGG | 0.476137 | 4_1:-39958109 | Msa0547180:CDS |
| TTAGCTGGAATTACATTCAC+TGG | 0.483760 | 4_1:-39959446 | Msa0547180:CDS |
| ATGTTTAAAGGTGGAAACTT+TGG | 0.487790 | 4_1:+39961075 | None:intergenic |
| GATATTACTATTATGTATGT+TGG | 0.490036 | 4_1:-39957054 | Msa0547180:three_prime_UTR |
| AGAAGAAAACGGTGACATAA+TGG | 0.491096 | 4_1:+39957855 | None:intergenic |
| TAACTGGAGGTGCAACTCCC+TGG | 0.492953 | 4_1:+39957743 | None:intergenic |
| ATGTTGCTGGTCGAGGTTGA+GGG | 0.497603 | 4_1:+39957962 | None:intergenic |
| GGAGCAACTCGTACTGGAAG+TGG | 0.497633 | 4_1:+39957655 | None:intergenic |
| CAGAAAGGAAGAAGATGAAG+AGG | 0.498222 | 4_1:+39961189 | None:intergenic |
| AGCAGGGAATTTAGGGCGAC+GGG | 0.498423 | 4_1:+39957813 | None:intergenic |
| AGTATATGCTGCTGCTCCAC+CGG | 0.502788 | 4_1:-39957605 | Msa0547180:CDS |
| CAGTACACAACTTTCCGGTC+AGG | 0.503151 | 4_1:-39959506 | Msa0547180:CDS |
| GAAGTGGCCGCATTACTTGT+GGG | 0.503190 | 4_1:+39957671 | None:intergenic |
| ACATATGCGATCATCTTGCC+AGG | 0.504019 | 4_1:-39957761 | Msa0547180:CDS |
| ATATGTCGAATGGGAACATA+AGG | 0.504593 | 4_1:+39957778 | None:intergenic |
| GTGGCATAAACTACAGGTGC+TGG | 0.506558 | 4_1:+39957475 | None:intergenic |
| CTGCACCACTAGTTGGTGCT+GGG | 0.510943 | 4_1:+39957284 | None:intergenic |
| ACTTGTGGGGACACTGCGGC+TGG | 0.514632 | 4_1:+39957685 | None:intergenic |
| ATTTAGGGCGACGGGTCCAT+CGG | 0.519139 | 4_1:+39957821 | None:intergenic |
| AAAAGACATCACCTCGAAGC+AGG | 0.519683 | 4_1:-39957915 | Msa0547180:CDS |
| ACTGCTGGCTGACGCCGTTG+CGG | 0.526695 | 4_1:+39957888 | None:intergenic |
| GATGATCGCATATGTCGAAT+GGG | 0.528345 | 4_1:+39957769 | None:intergenic |
| CAAGAAATTGCACAAAGGGT+AGG | 0.529625 | 4_1:-39959542 | Msa0547180:CDS |
| AAAGAGAAAGTGAAGCAGAA+AGG | 0.531520 | 4_1:+39961174 | None:intergenic |
| GTAGATGTCCTAAGCCTGAC+CGG | 0.533299 | 4_1:+39959492 | None:intergenic |
| TACAAAATTTCAGGATGAGA+CGG | 0.533377 | 4_1:-39959585 | Msa0547180:intron |
| TCTCTTATGCACGTGTATGA+AGG | 0.533582 | 4_1:+39960892 | None:intergenic |
| TGCTGGATCGACTTTACTGA+TGG | 0.534715 | 4_1:+39957492 | None:intergenic |
| GTTGCGGGATGCCTGCTTCG+AGG | 0.535418 | 4_1:+39957904 | None:intergenic |
| GGTCGAGGTTGAGGGCTGGT+TGG | 0.535590 | 4_1:+39957970 | None:intergenic |
| ATTCAGTAAGGCTCGTGCTA+TGG | 0.536198 | 4_1:+39958077 | None:intergenic |
| ACAAAATTTCAGGATGAGAC+GGG | 0.538097 | 4_1:-39959584 | Msa0547180:intron |
| AAAGTTGTGTACTGCGGCAA+CGG | 0.538171 | 4_1:+39959515 | None:intergenic |
| CAGCAGGGAATTTAGGGCGA+CGG | 0.540209 | 4_1:+39957812 | None:intergenic |
| CTTTCTGGTGTAGAAGAAAA+CGG | 0.540395 | 4_1:+39957844 | None:intergenic |
| CTTCTACACCAGAAAGCCGA+TGG | 0.542335 | 4_1:-39957837 | Msa0547180:CDS |
| ATCTGAAACAGTGCAGAGGT+TGG | 0.542599 | 4_1:-39957224 | Msa0547180:CDS |
| GGAAGTGGCCGCATTACTTG+TGG | 0.543405 | 4_1:+39957670 | None:intergenic |
| TTACCGTCTGAAGGAAAAGA+TGG | 0.543974 | 4_1:-39958055 | Msa0547180:CDS |
| ATCTGTACCAGGTACAGCAC+TGG | 0.545644 | 4_1:-39961020 | Msa0547180:five_prime_UTR |
| GTTCGTCTACTGGAATTGGT+AGG | 0.546352 | 4_1:+39957383 | None:intergenic |
| TGTGGGGACACTGCGGCTGG+TGG | 0.547384 | 4_1:+39957688 | None:intergenic |
| TTGCACCTCCAGTTACCATA+AGG | 0.547854 | 4_1:-39957735 | Msa0547180:CDS |
| AGTTTCAGTTTCAAAATCCA+AGG | 0.548542 | 4_1:-39957993 | Msa0547180:CDS |
| ACCCGACCCGAATCCCAAAA+CGG | 0.550435 | 4_1:-39961048 | Msa0547180:five_prime_UTR |
| TGCTGGTCGAGGTTGAGGGC+TGG | 0.550571 | 4_1:+39957966 | None:intergenic |
| AGATGATCGCATATGTCGAA+TGG | 0.550906 | 4_1:+39957768 | None:intergenic |
| TCCAGCTAATTCCACCGTAC+CGG | 0.551659 | 4_1:+39959460 | None:intergenic |
| CAAGAACCAGCTACAAGAGC+TGG | 0.553878 | 4_1:-39960938 | Msa0547180:CDS |
| CAGCAAAGTTGGTCCATCAC+CGG | 0.556442 | 4_1:-39957419 | Msa0547180:CDS |
| ATCTATTATAACTGGTGGAG+TGG | 0.559937 | 4_1:+39957456 | None:intergenic |
| ACTGCTTGCCGAATATTGAT+CGG | 0.564033 | 4_1:+39957631 | None:intergenic |
| AATGGAACTGTGATCACTGC+TGG | 0.566081 | 4_1:+39957873 | None:intergenic |
| AAACGGATCGGATCTGTACC+AGG | 0.569427 | 4_1:-39961031 | Msa0547180:five_prime_UTR |
| TTCGTCTACTGGAATTGGTA+GGG | 0.571574 | 4_1:+39957384 | None:intergenic |
| CTGTTCAACACTTCGTCAAG+CGG | 0.576763 | 4_1:-39960797 | Msa0547180:CDS |
| AAAATGCAGCTATGGCAGCT+TGG | 0.578374 | 4_1:-39959391 | Msa0547180:CDS |
| AGAAATTGCACAAAGGGTAG+GGG | 0.578498 | 4_1:-39959540 | Msa0547180:CDS |
| ATTAGCTTCAGAGGAATCAT+GGG | 0.582292 | 4_1:+39961113 | None:intergenic |
| TGTAGGTGAATTAGCTTCAG+AGG | 0.584702 | 4_1:+39961104 | None:intergenic |
| CGGGTTGGAATGTTTAAAGG+TGG | 0.584826 | 4_1:+39961066 | None:intergenic |
| GGTGGAGTGGCATAAACTAC+AGG | 0.588054 | 4_1:+39957469 | None:intergenic |
| CTTACTGAATTACCGTCTGA+AGG | 0.590169 | 4_1:-39958064 | Msa0547180:CDS |
| CTTTCTAGAGAGAGAAAGTG+AGG | 0.591808 | 4_1:-39960978 | Msa0547180:five_prime_UTR |
| GGAACATTCAGCTGCTGAGG+TGG | 0.592650 | 4_1:-39960776 | Msa0547180:CDS |
| AGCGGAACATTCAGCTGCTG+AGG | 0.595272 | 4_1:-39960779 | Msa0547180:CDS |
| TTTGCAGCAAGAGAATGAGA+AGG | 0.595844 | 4_1:+39960727 | None:intergenic |
| GAATGTTCCAGTGCTGTACC+TGG | 0.596146 | 4_1:+39961013 | None:intergenic |
| TTATGCACGTGTATGAAGGT+AGG | 0.596363 | 4_1:+39960896 | None:intergenic |
| ACCCGAATCCCAAAACGGAT+CGG | 0.600225 | 4_1:-39961043 | Msa0547180:five_prime_UTR |
| TCGAAGCAGGCATCCCGCAA+CGG | 0.609303 | 4_1:-39957902 | Msa0547180:CDS |
| GGTTCATCTATTATAACTGG+TGG | 0.609305 | 4_1:+39957451 | None:intergenic |
| TTGAAGGTTAGCATGAGCAA+TGG | 0.611246 | 4_1:-39957132 | Msa0547180:three_prime_UTR |
| GCATTCCTTATGGTAACTGG+AGG | 0.628682 | 4_1:+39957730 | None:intergenic |
| CTTAGTTCTTTGTCTCATCG+TGG | 0.631933 | 4_1:-39960751 | Msa0547180:CDS |
| TGATGGACCAACTTTGCTGA+CGG | 0.632900 | 4_1:+39957423 | None:intergenic |
| GATGACCCAGCACCAACTAG+TGG | 0.634509 | 4_1:-39957289 | Msa0547180:CDS |
| TCATACACGTGCATAAGAGA+AGG | 0.640719 | 4_1:-39960889 | Msa0547180:CDS |
| CAGTGTCCCCACAAGTAATG+CGG | 0.651092 | 4_1:-39957678 | Msa0547180:CDS |
| TGCTTGCCGAATATTGATCG+GGG | 0.653144 | 4_1:+39957633 | None:intergenic |
| GCTGGATCGACTTTACTGAT+GGG | 0.656207 | 4_1:+39957493 | None:intergenic |
| TCTAGAGAGAGAAAGTGAGG+AGG | 0.662787 | 4_1:-39960975 | Msa0547180:five_prime_UTR |
| CATATGCGATCATCTTGCCA+GGG | 0.665667 | 4_1:-39957760 | Msa0547180:CDS |
| AAGTGGCCGCATTACTTGTG+GGG | 0.666743 | 4_1:+39957672 | None:intergenic |
| ACAGGTTCATCTACTCGAAG+CGG | 0.668557 | 4_1:+39957517 | None:intergenic |
| AAGGTGCTGCTCCTGCAGCA+GGG | 0.668834 | 4_1:+39957797 | None:intergenic |
| TCTTACAAGAAATTGCACAA+AGG | 0.676644 | 4_1:-39959547 | Msa0547180:CDS |
| CAGAATCTGAAACAGTGCAG+AGG | 0.683225 | 4_1:-39957228 | Msa0547180:CDS |
| AAGGTCCTGATCACGCGCCG+CGG | 0.692375 | 4_1:-39960870 | Msa0547180:CDS |
| TTAACGGTAGCTTTGAACCG+CGG | 0.701686 | 4_1:+39960853 | None:intergenic |
| GCTTGCCGAATATTGATCGG+GGG | 0.701687 | 4_1:+39957634 | None:intergenic |
| GACCGGAAAGTTGTGTACTG+CGG | 0.716151 | 4_1:+39959509 | None:intergenic |
| CGAAGTGTTGAACAGTACTG+AGG | 0.718280 | 4_1:+39960805 | None:intergenic |
| CATTACTTGTGGGGACACTG+CGG | 0.741078 | 4_1:+39957681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTATTTTTGTTTTAT+TGG | - | chr4_1:39957923-39957942 | Msa0547180:CDS | 10.0% |
| !!! | ATAGAATTTTTATTTTGATA+TGG | - | chr4_1:39957988-39958007 | Msa0547180:CDS | 10.0% |
| !!! | TAGAATTTTTATTTTGATAT+GGG | - | chr4_1:39957989-39958008 | Msa0547180:CDS | 10.0% |
| !! | TAGAAAATAAAAAAAGACAA+GGG | + | chr4_1:39957700-39957719 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTGTTTCTTAAA+AGG | - | chr4_1:39958167-39958186 | Msa0547180:intron | 15.0% |
| !!! | TTAAGATTTGTTTCTTAAAA+GGG | - | chr4_1:39958168-39958187 | Msa0547180:intron | 15.0% |
| !! | CTAGAAAATAAAAAAAGACA+AGG | + | chr4_1:39957701-39957720 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTAGAGTCTAA+CGG | - | chr4_1:39957708-39957727 | Msa0547180:CDS | 20.0% |
| !!! | TTTTGATATGGGTTTAAAAT+TGG | - | chr4_1:39958000-39958019 | Msa0547180:CDS | 20.0% |
| !!! | TAAGATTTGTTTCTTAAAAG+GGG | - | chr4_1:39958169-39958188 | Msa0547180:intron | 20.0% |
| !!! | TAAAGCATAGTTCTAAATTT+CGG | + | chr4_1:39958567-39958586 | None:intergenic | 20.0% |
| !!! | GCAATATTTCATTTTATGAT+CGG | + | chr4_1:39959040-39959059 | None:intergenic | 20.0% |
| !! | AGAATTTAAACAAATCACTA+TGG | + | chr4_1:39959516-39959535 | None:intergenic | 20.0% |
| !!! | ATCTTATATCCTTAATCTTT+TGG | - | chr4_1:39960034-39960053 | Msa0547180:intron | 20.0% |
| !! | GATATTACTATTATGTATGT+TGG | - | chr4_1:39961242-39961261 | Msa0547180:five_prime_UTR | 20.0% |
| ! | TACTGATAAGTAGATAATTG+CGG | - | chr4_1:39957751-39957770 | Msa0547180:CDS | 25.0% |
| !! | TCCTTTGTTTCATTTCATTT+AGG | - | chr4_1:39957834-39957853 | Msa0547180:CDS | 25.0% |
| ! | TCCTAAATGAAATGAAACAA+AGG | + | chr4_1:39957838-39957857 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTGGTTCAATGA+AGG | - | chr4_1:39957934-39957953 | Msa0547180:CDS | 25.0% |
| ! | AATTATATACAACAAATCCG+TGG | + | chr4_1:39958205-39958224 | None:intergenic | 25.0% |
| ! | GTTTATCAATTCATATTGCA+TGG | - | chr4_1:39958638-39958657 | Msa0547180:intron | 25.0% |
| ! | CTTATCACTTACAAAATTTC+AGG | - | chr4_1:39958702-39958721 | Msa0547180:intron | 25.0% |
| ! | TATATGAATGACTGGAATAA+GGG | + | chr4_1:39959261-39959280 | None:intergenic | 25.0% |
| ! | TTATATGAATGACTGGAATA+AGG | + | chr4_1:39959262-39959281 | None:intergenic | 25.0% |
| ! | ATGGAATTTATATGAATGAC+TGG | + | chr4_1:39959269-39959288 | None:intergenic | 25.0% |
| !!! | TTAAGAAGTGTTATCAATCA+TGG | - | chr4_1:39959391-39959410 | Msa0547180:CDS | 25.0% |
| ! | TTTAAACAAATCACTATGGT+TGG | + | chr4_1:39959512-39959531 | None:intergenic | 25.0% |
| ! | TAACTTCTACTTGACAATAT+TGG | - | chr4_1:39959545-39959564 | Msa0547180:CDS | 25.0% |
| !!! | TGTTGCATCATTTTTTGATT+TGG | - | chr4_1:39959580-39959599 | Msa0547180:intron | 25.0% |
| ! | GGAAAACAACTATAAAAACA+CGG | + | chr4_1:39959698-39959717 | None:intergenic | 25.0% |
| ! | ATGAAAATGATTGAATTGCA+GGG | + | chr4_1:39959729-39959748 | None:intergenic | 25.0% |
| ! | TAAACTATAGTTGTTAACAC+CGG | + | chr4_1:39960083-39960102 | None:intergenic | 25.0% |
| !!! | TTTTGAAACTGAAACTTCAT+TGG | + | chr4_1:39960299-39960318 | None:intergenic | 25.0% |
| ! | ATGAGTAATGTAATAGTTGA+AGG | - | chr4_1:39961148-39961167 | Msa0547180:five_prime_UTR | 25.0% |
| ATGTTTAAAGGTGGAAACTT+TGG | + | chr4_1:39957224-39957243 | None:intergenic | 30.0% | |
| AAAGCTACCGTTAACTTTAA+CGG | - | chr4_1:39957452-39957471 | Msa0547180:CDS | 30.0% | |
| TGAAGAAACAAAAACTCACA+AGG | + | chr4_1:39957598-39957617 | None:intergenic | 30.0% | |
| !!! | GCTTTTTGTTTTTCTTCTGT+CGG | - | chr4_1:39957623-39957642 | Msa0547180:CDS | 30.0% |
| ACTGATAAGTAGATAATTGC+GGG | - | chr4_1:39957752-39957771 | Msa0547180:CDS | 30.0% | |
| TTTCGGTAAAAGATACTCTT+TGG | + | chr4_1:39958103-39958122 | None:intergenic | 30.0% | |
| ! | TTTGTTTCTTAAAAGGGGAT+TGG | - | chr4_1:39958174-39958193 | Msa0547180:intron | 30.0% |
| ! | TTGTTTCTTAAAAGGGGATT+GGG | - | chr4_1:39958175-39958194 | Msa0547180:intron | 30.0% |
| ! | CACTTTAGAAGACAAGTAAA+AGG | + | chr4_1:39958350-39958369 | None:intergenic | 30.0% |
| !! | CTTTTACTTGTCTTCTAAAG+TGG | - | chr4_1:39958348-39958367 | Msa0547180:intron | 30.0% |
| !! | TCTTCTAAAGTGGAATTTGT+AGG | - | chr4_1:39958358-39958377 | Msa0547180:intron | 30.0% |
| ATATAGGTAACTGTAAACAC+AGG | + | chr4_1:39958416-39958435 | None:intergenic | 30.0% | |
| CATGACTGATGGAAAAATAT+AGG | + | chr4_1:39958432-39958451 | None:intergenic | 30.0% | |
| ! | CTATATTTTTCCATCAGTCA+TGG | - | chr4_1:39958430-39958449 | Msa0547180:intron | 30.0% |
| CTGCTAAAACCTTAATATTG+TGG | - | chr4_1:39958540-39958559 | Msa0547180:intron | 30.0% | |
| AATTTCGGTCCACAATATTA+AGG | + | chr4_1:39958552-39958571 | None:intergenic | 30.0% | |
| TACAAAATTTCAGGATGAGA+CGG | - | chr4_1:39958711-39958730 | Msa0547180:intron | 30.0% | |
| TCTTACAAGAAATTGCACAA+AGG | - | chr4_1:39958749-39958768 | Msa0547180:intron | 30.0% | |
| CTTACAAGAAATTGCACAAA+GGG | - | chr4_1:39958750-39958769 | Msa0547180:intron | 30.0% | |
| !! | GGTTTTGATGCTATATTCAT+GGG | + | chr4_1:39959019-39959038 | None:intergenic | 30.0% |
| ACAAATTAAACCGTGGTTAT+GGG | + | chr4_1:39959062-39959081 | None:intergenic | 30.0% | |
| TTTCATAATCTATGATGCTG+TGG | - | chr4_1:39959165-39959184 | Msa0547180:intron | 30.0% | |
| GATAAAAAGGAGAGCAAAAA+TGG | + | chr4_1:39959288-39959307 | None:intergenic | 30.0% | |
| CACAAAACTCACAGATAAAA+AGG | + | chr4_1:39959301-39959320 | None:intergenic | 30.0% | |
| CATGAAAATGATTGAATTGC+AGG | + | chr4_1:39959730-39959749 | None:intergenic | 30.0% | |
| !! | TGCCAAACACATTATTTTTC+AGG | - | chr4_1:39959748-39959767 | Msa0547180:intron | 30.0% |
| !! | GCCAAACACATTATTTTTCA+GGG | - | chr4_1:39959749-39959768 | Msa0547180:intron | 30.0% |
| ACAATCAATTAGCAAAACTG+AGG | + | chr4_1:39959890-39959909 | None:intergenic | 30.0% | |
| ATAACAATGCCTTAGATTGA+TGG | - | chr4_1:39959917-39959936 | Msa0547180:intron | 30.0% | |
| ! | GTAATTTTGTTCATTGACAG+TGG | - | chr4_1:39960136-39960155 | Msa0547180:intron | 30.0% |
| GGAAATGAAATCATAGCATT+TGG | + | chr4_1:39960278-39960297 | None:intergenic | 30.0% | |
| AGTTTCAGTTTCAAAATCCA+AGG | - | chr4_1:39960303-39960322 | Msa0547180:intron | 30.0% | |
| ACAGGTTCATCTATTATAAC+TGG | + | chr4_1:39960851-39960870 | None:intergenic | 30.0% | |
| AAAGAGAAAGTGAAGCAGAA+AGG | + | chr4_1:39957125-39957144 | None:intergenic | 35.0% | |
| !! | CATGGGTTGTTTTCTGTTAA+GGG | + | chr4_1:39957169-39957188 | None:intergenic | 35.0% |
| !! | TCATGGGTTGTTTTCTGTTA+AGG | + | chr4_1:39957170-39957189 | None:intergenic | 35.0% |
| ! | ATTAGCTTCAGAGGAATCAT+GGG | + | chr4_1:39957186-39957205 | None:intergenic | 35.0% |
| ! | AATTAGCTTCAGAGGAATCA+TGG | + | chr4_1:39957187-39957206 | None:intergenic | 35.0% |
| ACTGATCATGTCAAACTCAA+AGG | + | chr4_1:39958057-39958076 | None:intergenic | 35.0% | |
| TTGTCACAACATCACGATTT+CGG | + | chr4_1:39958120-39958139 | None:intergenic | 35.0% | |
| GTATGTGACACACAACAAAA+AGG | + | chr4_1:39958264-39958283 | None:intergenic | 35.0% | |
| AAATTGGAACCTGAACTACA+CGG | + | chr4_1:39958390-39958409 | None:intergenic | 35.0% | |
| CTGTAAACACAGGAGAAAAT+TGG | + | chr4_1:39958406-39958425 | None:intergenic | 35.0% | |
| ! | CAATTTAGAACCATGACTGA+TGG | + | chr4_1:39958443-39958462 | None:intergenic | 35.0% |
| !! | ATGGTTCTAAATTGCAGTTG+TGG | - | chr4_1:39958449-39958468 | Msa0547180:intron | 35.0% |
| GTATGTCTTCATTGTGTCAT+TGG | - | chr4_1:39958660-39958679 | Msa0547180:intron | 35.0% | |
| ACAAAATTTCAGGATGAGAC+GGG | - | chr4_1:39958712-39958731 | Msa0547180:intron | 35.0% | |
| AAGAAATTGCACAAAGGGTA+GGG | - | chr4_1:39958755-39958774 | Msa0547180:intron | 35.0% | |
| TTAGCTGGAATTACATTCAC+TGG | - | chr4_1:39958850-39958869 | Msa0547180:intron | 35.0% | |
| ! | CTCTGCTTGTTTCTTATTCT+TGG | + | chr4_1:39958884-39958903 | None:intergenic | 35.0% |
| GAAAATCTTCACAGAAAAGC+TGG | + | chr4_1:39958959-39958978 | None:intergenic | 35.0% | |
| !! | CGGTTTTGATGCTATATTCA+TGG | + | chr4_1:39959020-39959039 | None:intergenic | 35.0% |
| TGAAATATTGCCCATAACCA+CGG | - | chr4_1:39959049-39959068 | Msa0547180:intron | 35.0% | |
| CACAAATTAAACCGTGGTTA+TGG | + | chr4_1:39959063-39959082 | None:intergenic | 35.0% | |
| !! | CATAACCACGGTTTAATTTG+TGG | - | chr4_1:39959061-39959080 | Msa0547180:intron | 35.0% |
| GGTTTCAAAAACAAGTATGC+AGG | + | chr4_1:39959211-39959230 | None:intergenic | 35.0% | |
| ACTATAGTAGCAATGCAGAA+TGG | - | chr4_1:39959351-39959370 | Msa0547180:intron | 35.0% | |
| CTATAGTAGCAATGCAGAAT+GGG | - | chr4_1:39959352-39959371 | Msa0547180:intron | 35.0% | |
| TATAGTAGCAATGCAGAATG+GGG | - | chr4_1:39959353-39959372 | Msa0547180:intron | 35.0% | |
| ! | CAATCATGGATTGCTACAAA+TGG | - | chr4_1:39959405-39959424 | Msa0547180:CDS | 35.0% |
| TGACAACACTTTGCACTAAA+TGG | - | chr4_1:39959474-39959493 | Msa0547180:CDS | 35.0% | |
| GTCAAGTAGAAGTTATAGTG+TGG | + | chr4_1:39959540-39959559 | None:intergenic | 35.0% | |
| !!! | GGCTTCAGGTGATTTTTTAA+TGG | + | chr4_1:39959657-39959676 | None:intergenic | 35.0% |
| GCCCTGAAAAATAATGTGTT+TGG | + | chr4_1:39959753-39959772 | None:intergenic | 35.0% | |
| GCTACACTACCAAAAGATTA+AGG | + | chr4_1:39960046-39960065 | None:intergenic | 35.0% | |
| ! | GATGTCTTTTGGCAAATTAG+AGG | + | chr4_1:39960371-39960390 | None:intergenic | 35.0% |
| AGAAGAAAACGGTGACATAA+TGG | + | chr4_1:39960444-39960463 | None:intergenic | 35.0% | |
| ! | CTTTCTGGTGTAGAAGAAAA+CGG | + | chr4_1:39960455-39960474 | None:intergenic | 35.0% |
| ATATGTCGAATGGGAACATA+AGG | + | chr4_1:39960521-39960540 | None:intergenic | 35.0% | |
| ATTGCATTCCTTATGGTAAC+TGG | + | chr4_1:39960572-39960591 | None:intergenic | 35.0% | |
| ! | TACAGGTATTGCATTCCTTA+TGG | + | chr4_1:39960579-39960598 | None:intergenic | 35.0% |
| ! | ATAGGTTCATCTTTTCGAAC+CGG | + | chr4_1:39960713-39960732 | None:intergenic | 35.0% |
| !! | TCATTTTTGCTGATGGGAAT+AGG | + | chr4_1:39960731-39960750 | None:intergenic | 35.0% |
| ATCTATTATAACTGGTGGAG+TGG | + | chr4_1:39960843-39960862 | None:intergenic | 35.0% | |
| GGTTCATCTATTATAACTGG+TGG | + | chr4_1:39960848-39960867 | None:intergenic | 35.0% | |
| !! | AATATTCTCAGTTTTGGCGT+CGG | + | chr4_1:39961044-39961063 | None:intergenic | 35.0% |
| ! | TGCTGGAATATTCTCAGTTT+TGG | + | chr4_1:39961050-39961069 | None:intergenic | 35.0% |
| CAGAAAGGAAGAAGATGAAG+AGG | + | chr4_1:39957110-39957129 | None:intergenic | 40.0% | |
| ! | TGTAGGTGAATTAGCTTCAG+AGG | + | chr4_1:39957195-39957214 | None:intergenic | 40.0% |
| GGAAACTTTGGTTGCTATGT+AGG | + | chr4_1:39957212-39957231 | None:intergenic | 40.0% | |
| ! | CTTTCTAGAGAGAGAAAGTG+AGG | - | chr4_1:39957318-39957337 | Msa0547180:CDS | 40.0% |
| TTATGCACGTGTATGAAGGT+AGG | + | chr4_1:39957403-39957422 | None:intergenic | 40.0% | |
| TCTCTTATGCACGTGTATGA+AGG | + | chr4_1:39957407-39957426 | None:intergenic | 40.0% | |
| TCATACACGTGCATAAGAGA+AGG | - | chr4_1:39957407-39957426 | Msa0547180:CDS | 40.0% | |
| GATCTCGCCGTTAAAGTTAA+CGG | + | chr4_1:39957462-39957481 | None:intergenic | 40.0% | |
| ! | CTTAGTTCTTTGTCTCATCG+TGG | - | chr4_1:39957545-39957564 | Msa0547180:CDS | 40.0% |
| TTTGCAGCAAGAGAATGAGA+AGG | + | chr4_1:39957572-39957591 | None:intergenic | 40.0% | |
| !! | GAAGCTTTTTCCCTTTATGC+TGG | - | chr4_1:39958231-39958250 | Msa0547180:intron | 40.0% |
| TGTGACACACAACAAAAAGG+TGG | + | chr4_1:39958261-39958280 | None:intergenic | 40.0% | |
| CATTGCGAATGTTGACATTG+CGG | - | chr4_1:39958475-39958494 | Msa0547180:intron | 40.0% | |
| CAAGAAATTGCACAAAGGGT+AGG | - | chr4_1:39958754-39958773 | Msa0547180:intron | 40.0% | |
| AGAAATTGCACAAAGGGTAG+GGG | - | chr4_1:39958756-39958775 | Msa0547180:intron | 40.0% | |
| AGCAGAGAAAAATGCAGCTA+TGG | - | chr4_1:39958897-39958916 | Msa0547180:intron | 40.0% | |
| !! | CGTCTCTAAAGCAATGTAAG+TGG | - | chr4_1:39958929-39958948 | Msa0547180:intron | 40.0% |
| CACAACCACAAATTAAACCG+TGG | + | chr4_1:39959069-39959088 | None:intergenic | 40.0% | |
| !!! | GGTTGTGATCGTTGATTTTG+CGG | - | chr4_1:39959082-39959101 | Msa0547180:intron | 40.0% |
| !! | GTTGATTTTGCGGAGAATGT+GGG | - | chr4_1:39959092-39959111 | Msa0547180:intron | 40.0% |
| TGATGCTGTGGCAATAATTG+CGG | - | chr4_1:39959177-39959196 | Msa0547180:intron | 40.0% | |
| !! | TCTGTGAGTTTTGTGCATAG+TGG | - | chr4_1:39959306-39959325 | Msa0547180:intron | 40.0% |
| ! | TCATGGATTGCTACAAATGG+TGG | - | chr4_1:39959408-39959427 | Msa0547180:CDS | 40.0% |
| AAACACGGTATGCTAACAGA+GGG | + | chr4_1:39959683-39959702 | None:intergenic | 40.0% | |
| AAAACACGGTATGCTAACAG+AGG | + | chr4_1:39959684-39959703 | None:intergenic | 40.0% | |
| TTGAATTGCAGGGTTGTAGT+TGG | + | chr4_1:39959719-39959738 | None:intergenic | 40.0% | |
| CTGGAATTAGAAAAGTGGCT+GGG | + | chr4_1:39959850-39959869 | None:intergenic | 40.0% | |
| CATGGCTGGAATTAGAAAAG+TGG | + | chr4_1:39959855-39959874 | None:intergenic | 40.0% | |
| GCACAAACACCATCAATCTA+AGG | + | chr4_1:39959929-39959948 | None:intergenic | 40.0% | |
| GTAGCCATTCTATTAGCAAC+CGG | - | chr4_1:39960061-39960080 | Msa0547180:intron | 40.0% | |
| ! | AACACCGGTTGCTAATAGAA+TGG | + | chr4_1:39960068-39960087 | None:intergenic | 40.0% |
| CTTCAGACGGTAATTCAGTA+AGG | + | chr4_1:39960234-39960253 | None:intergenic | 40.0% | |
| CTTACTGAATTACCGTCTGA+AGG | - | chr4_1:39960232-39960251 | Msa0547180:intron | 40.0% | |
| TTACCGTCTGAAGGAAAAGA+TGG | - | chr4_1:39960241-39960260 | Msa0547180:intron | 40.0% | |
| ! | TTGCCATCTTTTCCTTCAGA+CGG | + | chr4_1:39960247-39960266 | None:intergenic | 40.0% |
| GGAAGAATCTTTGATGTTGC+TGG | + | chr4_1:39960350-39960369 | None:intergenic | 40.0% | |
| GATGATCGCATATGTCGAAT+GGG | + | chr4_1:39960530-39960549 | None:intergenic | 40.0% | |
| AGATGATCGCATATGTCGAA+TGG | + | chr4_1:39960531-39960550 | None:intergenic | 40.0% | |
| ACTGCTTGCCGAATATTGAT+CGG | + | chr4_1:39960668-39960687 | None:intergenic | 40.0% | |
| TCCCATCAGCAAAAATGATC+TGG | - | chr4_1:39960733-39960752 | Msa0547180:CDS | 40.0% | |
| !! | GCCAGATCATTTTTGCTGAT+GGG | + | chr4_1:39960737-39960756 | None:intergenic | 40.0% |
| !! | TGCCAGATCATTTTTGCTGA+TGG | + | chr4_1:39960738-39960757 | None:intergenic | 40.0% |
| TTCGTCTACTGGAATTGGTA+GGG | + | chr4_1:39960915-39960934 | None:intergenic | 40.0% | |
| TCATCTTTGCTGATAGGAAC+AGG | + | chr4_1:39960938-39960957 | None:intergenic | 40.0% | |
| !! | TTTTTAACTGCTGATGCTGC+TGG | + | chr4_1:39960962-39960981 | None:intergenic | 40.0% |
| ! | GTTTTATCTGCACCACTAGT+TGG | + | chr4_1:39961022-39961041 | None:intergenic | 40.0% |
| TTGAAGGTTAGCATGAGCAA+TGG | - | chr4_1:39961164-39961183 | Msa0547180:five_prime_UTR | 40.0% | |
| ! | CGGGTTGGAATGTTTAAAGG+TGG | + | chr4_1:39957233-39957252 | None:intergenic | 45.0% |
| !! | GGTCGGGTTGGAATGTTTAA+AGG | + | chr4_1:39957236-39957255 | None:intergenic | 45.0% |
| !!! | ATCCGATCCGTTTTGGGATT+CGG | + | chr4_1:39957258-39957277 | None:intergenic | 45.0% |
| ! | GTACAGATCCGATCCGTTTT+GGG | + | chr4_1:39957264-39957283 | None:intergenic | 45.0% |
| TCTAGAGAGAGAAAGTGAGG+AGG | - | chr4_1:39957321-39957340 | Msa0547180:CDS | 45.0% | |
| !! | TTAACGGTAGCTTTGAACCG+CGG | + | chr4_1:39957446-39957465 | None:intergenic | 45.0% |
| !! | CGAAGTGTTGAACAGTACTG+AGG | + | chr4_1:39957494-39957513 | None:intergenic | 45.0% |
| CTGTTCAACACTTCGTCAAG+CGG | - | chr4_1:39957499-39957518 | Msa0547180:CDS | 45.0% | |
| ! | AGGTGGTTAGCCAGCATAAA+GGG | + | chr4_1:39958244-39958263 | None:intergenic | 45.0% |
| ! | AAGGTGGTTAGCCAGCATAA+AGG | + | chr4_1:39958245-39958264 | None:intergenic | 45.0% |
| GTTGACATTGCGGCAAAATG+TGG | - | chr4_1:39958485-39958504 | Msa0547180:intron | 45.0% | |
| TTGCAGTTGCAATGCCATTG+TGG | - | chr4_1:39958514-39958533 | Msa0547180:intron | 45.0% | |
| !! | GGTTTTAGCAGTCTCCACAA+TGG | + | chr4_1:39958531-39958550 | None:intergenic | 45.0% |
| AAAGTTGTGTACTGCGGCAA+CGG | + | chr4_1:39958784-39958803 | None:intergenic | 45.0% | |
| ! | GGACATCTACCTGTTTTCAC+CGG | - | chr4_1:39958817-39958836 | Msa0547180:intron | 45.0% |
| ! | TCTACCTGTTTTCACCGGTA+CGG | - | chr4_1:39958822-39958841 | Msa0547180:intron | 45.0% |
| AAAATGCAGCTATGGCAGCT+TGG | - | chr4_1:39958905-39958924 | Msa0547180:intron | 45.0% | |
| !!! | CGTTGATTTTGCGGAGAATG+TGG | - | chr4_1:39959091-39959110 | Msa0547180:intron | 45.0% |
| CGGAGAATGTGGGTCAAATA+TGG | - | chr4_1:39959102-39959121 | Msa0547180:intron | 45.0% | |
| GTTGATGCAGTCTCAATCGT+GGG | - | chr4_1:39959124-39959143 | Msa0547180:intron | 45.0% | |
| ! | TACTAGGCTGGGTATTGCTA+GGG | + | chr4_1:39959232-39959251 | None:intergenic | 45.0% |
| TAGCAATACCCAGCCTAGTA+CGG | - | chr4_1:39959232-39959251 | Msa0547180:intron | 45.0% | |
| GGAATAAGGGAAACCGTACT+AGG | + | chr4_1:39959248-39959267 | None:intergenic | 45.0% | |
| TTGGAATATCACAGCTGAGC+AGG | - | chr4_1:39959599-39959618 | Msa0547180:intron | 45.0% | |
| TGGAATATCACAGCTGAGCA+GGG | - | chr4_1:39959600-39959619 | Msa0547180:intron | 45.0% | |
| GCTGGAATTAGAAAAGTGGC+TGG | + | chr4_1:39959851-39959870 | None:intergenic | 45.0% | |
| TGCAAGCTCTTCAACTGAAC+CGG | - | chr4_1:39960169-39960188 | Msa0547180:intron | 45.0% | |
| TCCAGTTCGTCATTGTTCTC+CGG | + | chr4_1:39960191-39960210 | None:intergenic | 45.0% | |
| ATTCAGTAAGGCTCGTGCTA+TGG | + | chr4_1:39960222-39960241 | None:intergenic | 45.0% | |
| ATCTTTGATGTTGCTGGTCG+AGG | + | chr4_1:39960344-39960363 | None:intergenic | 45.0% | |
| ! | TGCTTCGAGGTGATGTCTTT+TGG | + | chr4_1:39960382-39960401 | None:intergenic | 45.0% |
| AAAAGACATCACCTCGAAGC+AGG | - | chr4_1:39960381-39960400 | Msa0547180:intron | 45.0% | |
| AATGGAACTGTGATCACTGC+TGG | + | chr4_1:39960426-39960445 | None:intergenic | 45.0% | |
| ACATATGCGATCATCTTGCC+AGG | - | chr4_1:39960535-39960554 | Msa0547180:intron | 45.0% | |
| CATATGCGATCATCTTGCCA+GGG | - | chr4_1:39960536-39960555 | Msa0547180:intron | 45.0% | |
| TTGCACCTCCAGTTACCATA+AGG | - | chr4_1:39960561-39960580 | Msa0547180:intron | 45.0% | |
| GCATTCCTTATGGTAACTGG+AGG | + | chr4_1:39960569-39960588 | None:intergenic | 45.0% | |
| TTGCTCCCCCGATCAATATT+CGG | - | chr4_1:39960657-39960676 | Msa0547180:intron | 45.0% | |
| TGCTTGCCGAATATTGATCG+GGG | + | chr4_1:39960666-39960685 | None:intergenic | 45.0% | |
| CTGCTTGCCGAATATTGATC+GGG | + | chr4_1:39960667-39960686 | None:intergenic | 45.0% | |
| ACAGGTTCATCTACTCGAAG+CGG | + | chr4_1:39960782-39960801 | None:intergenic | 45.0% | |
| TCGACTTTACTGATGGGAAC+AGG | + | chr4_1:39960800-39960819 | None:intergenic | 45.0% | |
| ! | GCTGGATCGACTTTACTGAT+GGG | + | chr4_1:39960806-39960825 | None:intergenic | 45.0% |
| ! | TGCTGGATCGACTTTACTGA+TGG | + | chr4_1:39960807-39960826 | None:intergenic | 45.0% |
| ! | TGATGGACCAACTTTGCTGA+CGG | + | chr4_1:39960876-39960895 | None:intergenic | 45.0% |
| GTTCGTCTACTGGAATTGGT+AGG | + | chr4_1:39960916-39960935 | None:intergenic | 45.0% | |
| ACAGGTTCGTCTACTGGAAT+TGG | + | chr4_1:39960920-39960939 | None:intergenic | 45.0% | |
| ATAGGAACAGGTTCGTCTAC+TGG | + | chr4_1:39960926-39960945 | None:intergenic | 45.0% | |
| GCTGGATCATCTTTGCTGAT+AGG | + | chr4_1:39960944-39960963 | None:intergenic | 45.0% | |
| TGCACTGTTTCAGATTCTGC+TGG | + | chr4_1:39961067-39961086 | None:intergenic | 45.0% | |
| ! | CAGAATCTGAAACAGTGCAG+AGG | - | chr4_1:39961068-39961087 | Msa0547180:five_prime_UTR | 45.0% |
| ! | ATCTGAAACAGTGCAGAGGT+TGG | - | chr4_1:39961072-39961091 | Msa0547180:five_prime_UTR | 45.0% |
| !!! | ATCCGTTTTGGGATTCGGGT+CGG | + | chr4_1:39957253-39957272 | None:intergenic | 50.0% |
| ACCCGAATCCCAAAACGGAT+CGG | - | chr4_1:39957253-39957272 | Msa0547180:CDS | 50.0% | |
| !!! | TCCGATCCGTTTTGGGATTC+GGG | + | chr4_1:39957257-39957276 | None:intergenic | 50.0% |
| ! | GGTACAGATCCGATCCGTTT+TGG | + | chr4_1:39957265-39957284 | None:intergenic | 50.0% |
| AAACGGATCGGATCTGTACC+AGG | - | chr4_1:39957265-39957284 | Msa0547180:CDS | 50.0% | |
| ATCTGTACCAGGTACAGCAC+TGG | - | chr4_1:39957276-39957295 | Msa0547180:CDS | 50.0% | |
| GAATGTTCCAGTGCTGTACC+TGG | + | chr4_1:39957286-39957305 | None:intergenic | 50.0% | |
| CAAGAACCAGCTACAAGAGC+TGG | - | chr4_1:39957358-39957377 | Msa0547180:CDS | 50.0% | |
| TTTGTGCCAGCTCTTGTAGC+TGG | + | chr4_1:39957367-39957386 | None:intergenic | 50.0% | |
| AAAGGGGATTGGGCTTTCCA+CGG | - | chr4_1:39958185-39958204 | Msa0547180:intron | 50.0% | |
| AGGATCCTACCGTGTAGTTC+AGG | - | chr4_1:39958378-39958397 | Msa0547180:intron | 50.0% | |
| TGGAACCTGAACTACACGGT+AGG | + | chr4_1:39958386-39958405 | None:intergenic | 50.0% | |
| TGCCGCAGTACACAACTTTC+CGG | - | chr4_1:39958785-39958804 | Msa0547180:intron | 50.0% | |
| GACCGGAAAGTTGTGTACTG+CGG | + | chr4_1:39958790-39958809 | None:intergenic | 50.0% | |
| CAGTACACAACTTTCCGGTC+AGG | - | chr4_1:39958790-39958809 | Msa0547180:intron | 50.0% | |
| ACAACTTTCCGGTCAGGCTT+AGG | - | chr4_1:39958796-39958815 | Msa0547180:intron | 50.0% | |
| GTAGATGTCCTAAGCCTGAC+CGG | + | chr4_1:39958807-39958826 | None:intergenic | 50.0% | |
| TCCAGCTAATTCCACCGTAC+CGG | + | chr4_1:39958839-39958858 | None:intergenic | 50.0% | |
| ! | GGTTGATGCAGTCTCAATCG+TGG | - | chr4_1:39959123-39959142 | Msa0547180:intron | 50.0% |
| !! | TCGTGGGTGCGTTTTGTTCT+TGG | - | chr4_1:39959140-39959159 | Msa0547180:intron | 50.0% |
| ! | GTACTAGGCTGGGTATTGCT+AGG | + | chr4_1:39959233-39959252 | None:intergenic | 50.0% |
| AAGGGAAACCGTACTAGGCT+GGG | + | chr4_1:39959243-39959262 | None:intergenic | 50.0% | |
| TAAGGGAAACCGTACTAGGC+TGG | + | chr4_1:39959244-39959263 | None:intergenic | 50.0% | |
| TGAGCAGGGACAATGGATCT+AGG | - | chr4_1:39959614-39959633 | Msa0547180:intron | 50.0% | |
| GAGCAGGGACAATGGATCTA+GGG | - | chr4_1:39959615-39959634 | Msa0547180:intron | 50.0% | |
| GGGACAATGGATCTAGGGAT+TGG | - | chr4_1:39959620-39959639 | Msa0547180:intron | 50.0% | |
| !! | GTGGCTGGGACTTGTTGTAA+CGG | + | chr4_1:39959836-39959855 | None:intergenic | 50.0% |
| CTGAGGCAGAGAAGTTGACA+TGG | + | chr4_1:39959873-39959892 | None:intergenic | 50.0% | |
| ACCGGAGAACAATGACGAAC+TGG | - | chr4_1:39960187-39960206 | Msa0547180:intron | 50.0% | |
| ATGTTGCTGGTCGAGGTTGA+GGG | + | chr4_1:39960337-39960356 | None:intergenic | 50.0% | |
| CTTCTACACCAGAAAGCCGA+TGG | - | chr4_1:39960459-39960478 | Msa0547180:intron | 50.0% | |
| CTCCTGCAGCAGGGAATTTA+GGG | + | chr4_1:39960493-39960512 | None:intergenic | 50.0% | |
| CATTACTTGTGGGGACACTG+CGG | + | chr4_1:39960618-39960637 | None:intergenic | 50.0% | |
| CAGTGTCCCCACAAGTAATG+CGG | - | chr4_1:39960618-39960637 | Msa0547180:intron | 50.0% | |
| AAGTGGCCGCATTACTTGTG+GGG | + | chr4_1:39960627-39960646 | None:intergenic | 50.0% | |
| GAAGTGGCCGCATTACTTGT+GGG | + | chr4_1:39960628-39960647 | None:intergenic | 50.0% | |
| GCTTGCCGAATATTGATCGG+GGG | + | chr4_1:39960665-39960684 | None:intergenic | 50.0% | |
| AGTATATGCTGCTGCTCCAC+CGG | - | chr4_1:39960691-39960710 | Msa0547180:intron | 50.0% | |
| ! | GGTTCATCTTTTCGAACCGG+TGG | + | chr4_1:39960710-39960729 | None:intergenic | 50.0% |
| GTGGCATAAACTACAGGTGC+TGG | + | chr4_1:39960824-39960843 | None:intergenic | 50.0% | |
| GGTGGAGTGGCATAAACTAC+AGG | + | chr4_1:39960830-39960849 | None:intergenic | 50.0% | |
| CCAACTTTGCTGACGGTAAC+AGG | + | chr4_1:39960869-39960888 | None:intergenic | 50.0% | |
| CCTGTTACCGTCAGCAAAGT+TGG | - | chr4_1:39960866-39960885 | Msa0547180:CDS | 50.0% | |
| ! | CAGCAAAGTTGGTCCATCAC+CGG | - | chr4_1:39960877-39960896 | Msa0547180:CDS | 50.0% |
| !!! | TTTTGGGATTCGGGTCGGGT+TGG | + | chr4_1:39957248-39957267 | None:intergenic | 55.0% |
| ACCCGACCCGAATCCCAAAA+CGG | - | chr4_1:39957248-39957267 | Msa0547180:CDS | 55.0% | |
| !!! | TCCGTTTTGGGATTCGGGTC+GGG | + | chr4_1:39957252-39957271 | None:intergenic | 55.0% |
| AGCGGAACATTCAGCTGCTG+AGG | - | chr4_1:39957517-39957536 | Msa0547180:CDS | 55.0% | |
| GGAACATTCAGCTGCTGAGG+TGG | - | chr4_1:39957520-39957539 | Msa0547180:CDS | 55.0% | |
| ! | ACCTGTTTTCACCGGTACGG+TGG | - | chr4_1:39958825-39958844 | Msa0547180:intron | 55.0% |
| ! | TCCACCGTACCGGTGAAAAC+AGG | + | chr4_1:39958829-39958848 | None:intergenic | 55.0% |
| ACCGGTACGGTGGAATTAGC+TGG | - | chr4_1:39958835-39958854 | Msa0547180:intron | 55.0% | |
| TCACAGCTGAGCAGGGACAA+TGG | - | chr4_1:39959607-39959626 | Msa0547180:intron | 55.0% | |
| CTAACAGAGGGTGAGGCTTC+AGG | + | chr4_1:39959671-39959690 | None:intergenic | 55.0% | |
| CGGTATGCTAACAGAGGGTG+AGG | + | chr4_1:39959678-39959697 | None:intergenic | 55.0% | |
| GGCAGAGAAGTTGACATGGC+TGG | + | chr4_1:39959869-39959888 | None:intergenic | 55.0% | |
| GATGTTGCTGGTCGAGGTTG+AGG | + | chr4_1:39960338-39960357 | None:intergenic | 55.0% | |
| ! | ATTTAGGGCGACGGGTCCAT+CGG | + | chr4_1:39960478-39960497 | None:intergenic | 55.0% |
| ! | AGCAGGGAATTTAGGGCGAC+GGG | + | chr4_1:39960486-39960505 | None:intergenic | 55.0% |
| ! | CAGCAGGGAATTTAGGGCGA+CGG | + | chr4_1:39960487-39960506 | None:intergenic | 55.0% |
| GCTCCTGCAGCAGGGAATTT+AGG | + | chr4_1:39960494-39960513 | None:intergenic | 55.0% | |
| ! | TAACTGGAGGTGCAACTCCC+TGG | + | chr4_1:39960556-39960575 | None:intergenic | 55.0% |
| GGAAGTGGCCGCATTACTTG+TGG | + | chr4_1:39960629-39960648 | None:intergenic | 55.0% | |
| GGAGCAACTCGTACTGGAAG+TGG | + | chr4_1:39960644-39960663 | None:intergenic | 55.0% | |
| GGTGGAGCAGCAGCATATAC+TGG | + | chr4_1:39960692-39960711 | None:intergenic | 55.0% | |
| ! | GCAGCATTTTCTGCCGGTGA+TGG | + | chr4_1:39960893-39960912 | None:intergenic | 55.0% |
| ! | GGTAGGGCAGCATTTTCTGC+CGG | + | chr4_1:39960899-39960918 | None:intergenic | 55.0% |
| GATGACCCAGCACCAACTAG+TGG | - | chr4_1:39961007-39961026 | Msa0547180:five_prime_UTR | 55.0% | |
| ! | CTGCACCACTAGTTGGTGCT+GGG | + | chr4_1:39961015-39961034 | None:intergenic | 55.0% |
| ! | TCTGCACCACTAGTTGGTGC+TGG | + | chr4_1:39961016-39961035 | None:intergenic | 55.0% |
| TCGAAGCAGGCATCCCGCAA+CGG | - | chr4_1:39960394-39960413 | Msa0547180:intron | 60.0% | |
| CGCCCTAAATTCCCTGCTGC+AGG | - | chr4_1:39960488-39960507 | Msa0547180:intron | 60.0% | |
| !! | AAGGTGCTGCTCCTGCAGCA+GGG | + | chr4_1:39960502-39960521 | None:intergenic | 60.0% |
| !! | TAAGGTGCTGCTCCTGCAGC+AGG | + | chr4_1:39960503-39960522 | None:intergenic | 60.0% |
| ATCGGGGGAGCAACTCGTAC+TGG | + | chr4_1:39960650-39960669 | None:intergenic | 60.0% | |
| AAGGTCCTGATCACGCGCCG+CGG | - | chr4_1:39957426-39957445 | Msa0547180:CDS | 65.0% | |
| TTGAACCGCGGCGCGTGATC+AGG | + | chr4_1:39957434-39957453 | None:intergenic | 65.0% | |
| !! | GGTTGAGGGCTGGTTGGCCT+TGG | + | chr4_1:39960323-39960342 | None:intergenic | 65.0% |
| ! | GGTCGAGGTTGAGGGCTGGT+TGG | + | chr4_1:39960329-39960348 | None:intergenic | 65.0% |
| TGCTGGTCGAGGTTGAGGGC+TGG | + | chr4_1:39960333-39960352 | None:intergenic | 65.0% | |
| GTTGCGGGATGCCTGCTTCG+AGG | + | chr4_1:39960395-39960414 | None:intergenic | 65.0% | |
| ! | ACTGCTGGCTGACGCCGTTG+CGG | + | chr4_1:39960411-39960430 | None:intergenic | 65.0% |
| !! | CGACGGGTCCATCGGCTTTC+TGG | + | chr4_1:39960470-39960489 | None:intergenic | 65.0% |
| !! | GCTGGTGGCGGGGAGAATAC+AGG | + | chr4_1:39960596-39960615 | None:intergenic | 65.0% |
| ACTTGTGGGGACACTGCGGC+TGG | + | chr4_1:39960614-39960633 | None:intergenic | 65.0% | |
| ! | CTGCTGGCTGACGCCGTTGC+GGG | + | chr4_1:39960410-39960429 | None:intergenic | 70.0% |
| TGTGGGGACACTGCGGCTGG+TGG | + | chr4_1:39960611-39960630 | None:intergenic | 70.0% | |
| ! | GGACACTGCGGCTGGTGGCG+GGG | + | chr4_1:39960606-39960625 | None:intergenic | 75.0% |
| GGGACACTGCGGCTGGTGGC+GGG | + | chr4_1:39960607-39960626 | None:intergenic | 75.0% | |
| GGGGACACTGCGGCTGGTGG+CGG | + | chr4_1:39960608-39960627 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39957023 | 39961295 | 39957023 | ID=Msa0547180;Name=Msa0547180 |
| chr4_1 | mRNA | 39957023 | 39961295 | 39957023 | ID=Msa0547180-mRNA-1;Parent=Msa0547180;Name=Msa0547180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=330|1|1|1|1|1|3|184|473 |
| chr4_1 | exon | 39957023 | 39958162 | 39957023 | ID=Msa0547180-mRNA-1:exon:10180;Parent=Msa0547180-mRNA-1 |
| chr4_1 | exon | 39959375 | 39959594 | 39959375 | ID=Msa0547180-mRNA-1:exon:10179;Parent=Msa0547180-mRNA-1 |
| chr4_1 | exon | 39960720 | 39961295 | 39960720 | ID=Msa0547180-mRNA-1:exon:10178;Parent=Msa0547180-mRNA-1 |
| chr4_1 | five_prime_UTR | 39960966 | 39961295 | 39960966 | ID=Msa0547180-mRNA-1:five_prime_utr;Parent=Msa0547180-mRNA-1 |
| chr4_1 | CDS | 39960720 | 39960965 | 39960720 | ID=Msa0547180-mRNA-1:cds;Parent=Msa0547180-mRNA-1 |
| chr4_1 | CDS | 39959375 | 39959594 | 39959375 | ID=Msa0547180-mRNA-1:cds;Parent=Msa0547180-mRNA-1 |
| chr4_1 | CDS | 39957207 | 39958162 | 39957207 | ID=Msa0547180-mRNA-1:cds;Parent=Msa0547180-mRNA-1 |
| chr4_1 | three_prime_UTR | 39957023 | 39957206 | 39957023 | ID=Msa0547180-mRNA-1:three_prime_utr;Parent=Msa0547180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
