AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899700 MtrunA17_Chr6g0485671 95.498 422 19 0 34 455 28 449 0.0 837
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899700 AT5G19540.1 70.437 389 111 3 73 457 70 458 0.0 575
Msa0899700 AT5G19540.2 70.437 389 111 3 73 457 70 458 0.0 575

Find 110 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAATGCTTCTATTTC+AGG 0.070406 6_1:+95029094 None:intergenic
TGGCGGTGGATCTGTGGTTT+TGG 0.230954 6_1:-95028128 Msa0899700:CDS
TCATCGACTCAACAAGAAAA+TGG 0.230955 6_1:-95032418 Msa0899700:CDS
AACTCAAAACCTGGAGTAAT+TGG 0.256723 6_1:+95029414 None:intergenic
AATAAGATTGCCATACTTTA+CGG 0.263181 6_1:-95028357 Msa0899700:CDS
GGTAATTGAGACAATCTAAT+TGG 0.268697 6_1:+95029480 None:intergenic
AATTATTACCATATGATTTA+CGG 0.278611 6_1:-95027771 Msa0899700:three_prime_UTR
CGTAGGACTCAAGCTCCTTC+TGG 0.285730 6_1:+95029657 None:intergenic
TCAATTACCAGTCTGAAAAT+TGG 0.290529 6_1:-95029466 Msa0899700:CDS
GAATTTGAAAAGGGTGGTTT+TGG 0.293134 6_1:+95032469 None:intergenic
AAGACAGTGGCTAGGGCTTC+AGG 0.299667 6_1:-95028204 Msa0899700:CDS
ACCTCTTTGGGGCATGGAAA+TGG 0.304134 6_1:-95027880 Msa0899700:three_prime_UTR
GAATTTGAGCCATCTGTCTT+TGG 0.312878 6_1:+95029516 None:intergenic
AAACGCTTCCGATGAGAAAA+AGG 0.312911 6_1:+95029149 None:intergenic
TCTTCGGCACCACGGTGAAT+TGG 0.313474 6_1:-95028098 Msa0899700:CDS
GCTCTTAAAACTTTGAGAAA+TGG 0.323854 6_1:+95027904 None:intergenic
TTAAAAGATGATATGATCAT+TGG 0.353086 6_1:-95028034 Msa0899700:exon
CTCTTAAAACTTTGAGAAAT+GGG 0.360056 6_1:+95027905 None:intergenic
CTCCATGGATCAAGATCTTC+CGG 0.363319 6_1:+95029220 None:intergenic
CGATTGTGTCCTTTATGAAA+TGG 0.381202 6_1:-95029636 Msa0899700:CDS
ATAAGATTGCCATACTTTAC+GGG 0.388932 6_1:-95028356 Msa0899700:CDS
CTTCGGCACCACGGTGAATT+GGG 0.392853 6_1:-95028097 Msa0899700:CDS
GAGGAGAAATCTGTTATAAT+TGG 0.399530 6_1:-95028435 Msa0899700:CDS
CTCAATCTCCTTCCGAGATC+CGG 0.412651 6_1:+95028321 None:intergenic
CCTCTTTGGGGCATGGAAAT+GGG 0.413369 6_1:-95027879 Msa0899700:three_prime_UTR
GTACTTCCTATGCCGCTTGT+TGG 0.414173 6_1:-95029172 Msa0899700:CDS
ATGCATGTAATCATAAGAAA+TGG 0.414753 6_1:-95027853 Msa0899700:three_prime_UTR
TGCTAGCTACCATTTCATAA+AGG 0.415690 6_1:+95029627 None:intergenic
AAGAAAAGAAGGAAAAGCTT+TGG 0.417455 6_1:+95032501 None:intergenic
AAAGGGATTGATGGTTCTAC+TGG 0.424242 6_1:-95032340 Msa0899700:CDS
ATTTCAGGATATTCTGATGC+TGG 0.424776 6_1:+95029109 None:intergenic
TTTAAACCAACCTGAAGAAA+AGG 0.426688 6_1:+95032259 None:intergenic
AATGTTGCAGCCTTCAATTC+CGG 0.426914 6_1:-95029239 Msa0899700:CDS
GATATAAGAAGAAGTTTCCT+TGG 0.434374 6_1:-95032294 Msa0899700:CDS
TTGCTTTGTAGAAACTGTTC+TGG 0.435673 6_1:+95032391 None:intergenic
GTGTTGTACTATGATGTTGT+TGG 0.444714 6_1:+95032625 None:intergenic
AGGTTCAAGAAAGGGATTGA+TGG 0.445776 6_1:-95032349 Msa0899700:CDS
GGAAATCCAACAAGAAAAGA+AGG 0.449183 6_1:+95032490 None:intergenic
GGTGGCCACATGCCGGATCT+CGG 0.463228 6_1:-95028333 Msa0899700:CDS
GACAGATGGCTCAAATTCTC+AGG 0.469611 6_1:-95029511 Msa0899700:CDS
ATGTTACCACAGAAATTCTT+CGG 0.470066 6_1:-95028068 Msa0899700:CDS
CGTTTCTGAAGACAGTGGCT+AGG 0.470149 6_1:-95028212 Msa0899700:CDS
CCTCAGAAAAGCAATGGATA+AGG 0.472194 6_1:-95028385 Msa0899700:CDS
GGAAAAGCTTTGGAAGTTGA+AGG 0.472394 6_1:+95032511 None:intergenic
CTTGTGAACCGTAAATCATA+TGG 0.477047 6_1:+95027763 None:intergenic
GGGTAACAGCTTGGTCCATA+AGG 0.478495 6_1:-95028263 Msa0899700:CDS
TTTGAGGGTGGAATTTGAAA+AGG 0.479151 6_1:+95032459 None:intergenic
TCAAGATCTTCCGGAATTGA+AGG 0.479834 6_1:+95029229 None:intergenic
CGGATCTCGGAAGGAGATTG+AGG 0.480710 6_1:-95028320 Msa0899700:CDS
CGGAAGCGTTTGTGCAAATG+TGG 0.481614 6_1:-95029137 Msa0899700:CDS
CAGCTTGGTCCATAAGGAAA+AGG 0.483406 6_1:-95028257 Msa0899700:CDS
AGAGCTACCTCTTTGGGGCA+TGG 0.486812 6_1:-95027886 Msa0899700:three_prime_UTR
ATTTCATGAGGTTCAAGAAA+GGG 0.490455 6_1:-95032357 Msa0899700:CDS
TGAGACCTTCCAATTACTCC+AGG 0.492747 6_1:-95029423 Msa0899700:intron
TGATGTAAGTGCAGCAATGA+AGG 0.493608 6_1:-95029068 Msa0899700:CDS
TTGAGGGTGGAATTTGAAAA+GGG 0.494338 6_1:+95032460 None:intergenic
AAAAGGCCAACAAGCGGCAT+AGG 0.495123 6_1:+95029166 None:intergenic
CATCGACTCAACAAGAAAAT+GGG 0.498261 6_1:-95032417 Msa0899700:CDS
CTCAGAAAAGCAATGGATAA+GGG 0.498778 6_1:-95028384 Msa0899700:CDS
TTATGAAATGGTAGCTAGCA+AGG 0.507890 6_1:-95029624 Msa0899700:CDS
GAGTTCGATTTAGTCCCGTC+TGG 0.510649 6_1:-95028294 Msa0899700:CDS
ACTCAAGTGTTCTACATATG+TGG 0.513154 6_1:-95027827 Msa0899700:three_prime_UTR
CTAGCCACTGTCTTCAGAAA+CGG 0.513880 6_1:+95028213 None:intergenic
GTTTCTGAAGACAGTGGCTA+GGG 0.517393 6_1:-95028211 Msa0899700:CDS
GATTTCATGAGGTTCAAGAA+AGG 0.544931 6_1:-95032358 Msa0899700:CDS
CAATCTTGGCGGTGGATCTG+TGG 0.546535 6_1:-95028134 Msa0899700:CDS
ACAGAAATTCTTCGGTATGT+TGG 0.549627 6_1:-95028060 Msa0899700:CDS
CGAGAACCTCAGAAAAGCAA+TGG 0.551497 6_1:-95028391 Msa0899700:CDS
AGAGAATATGAGAAACCCTA+TGG 0.555242 6_1:-95029594 Msa0899700:CDS
CGATTTAGTCCCGTCTGGTG+TGG 0.555780 6_1:-95028289 Msa0899700:CDS
GAACCTCATGAAATCTGCAA+TGG 0.556856 6_1:+95032366 None:intergenic
CATAAAAGCTTAGATCTCCA+TGG 0.559110 6_1:+95029205 None:intergenic
TAGTCCCGTCTGGTGTGGAG+TGG 0.563205 6_1:-95028284 Msa0899700:CDS
GTTGAACCGTTATCAGACAT+TGG 0.564903 6_1:-95028175 Msa0899700:CDS
CCCATTTCCATGCCCCAAAG+AGG 0.566399 6_1:+95027879 None:intergenic
GCCACATGCCGGATCTCGGA+AGG 0.567733 6_1:-95028329 Msa0899700:CDS
ACAAAATACGGCAGATGTGG+AGG 0.568405 6_1:-95028454 Msa0899700:CDS
TTCCGGAAGATCTTGATCCA+TGG 0.569292 6_1:-95029222 Msa0899700:CDS
GGATCTCGGAAGGAGATTGA+GGG 0.569864 6_1:-95028319 Msa0899700:CDS
GCAAAGCCAATGTCTGATAA+CGG 0.573019 6_1:+95028169 None:intergenic
AGGACTCAAGCTCCTTCTGG+AGG 0.576534 6_1:+95029660 None:intergenic
GTACAGCTTGACACAAAATA+CGG 0.576804 6_1:-95028466 Msa0899700:intron
AGGGTGGAATTTGAAAAGGG+TGG 0.581692 6_1:+95032463 None:intergenic
GTGTGGAGTGGGTAACAGCT+TGG 0.589810 6_1:-95028272 Msa0899700:CDS
AGTCCCGTCTGGTGTGGAGT+GGG 0.591895 6_1:-95028283 Msa0899700:CDS
GACACAAAATACGGCAGATG+TGG 0.592912 6_1:-95028457 Msa0899700:CDS
CTGAAATAGAAGCATTGTCA+AGG 0.597814 6_1:-95029093 Msa0899700:CDS
ATTCCATTGCAGATTTCATG+AGG 0.598572 6_1:-95032369 Msa0899700:CDS
AATGTCTGATAACGGTTCAA+CGG 0.600103 6_1:+95028177 None:intergenic
TTACCCACTCCACACCAGAC+GGG 0.604590 6_1:+95028280 None:intergenic
CAAAACCTGGAGTAATTGGA+AGG 0.605651 6_1:+95029418 None:intergenic
CAGATGTTAGTCTCTTTGCA+AGG 0.609726 6_1:+95029041 None:intergenic
TCCTTCCGAGATCCGGCATG+TGG 0.610617 6_1:+95028328 None:intergenic
TTAAAAGGATCACAAACTAG+AGG 0.613345 6_1:-95029560 Msa0899700:CDS
ATGCAGCAACATAGCAAACT+CGG 0.616441 6_1:+95027736 None:intergenic
TATGACTCTTAGATCTACAA+AGG 0.619536 6_1:-95029263 Msa0899700:CDS
TGGATGCATCCAAAGACAGA+TGG 0.619679 6_1:-95029525 Msa0899700:CDS
TAAGATTGCCATACTTTACG+GGG 0.624114 6_1:-95028355 Msa0899700:CDS
AAAGGCTTCAAAAGAGACCA+AGG 0.625052 6_1:+95032277 None:intergenic
GGACTCAAGCTCCTTCTGGA+GGG 0.634976 6_1:+95029661 None:intergenic
GTTACCCACTCCACACCAGA+CGG 0.637773 6_1:+95028279 None:intergenic
AACATACCGAAGAATTTCTG+TGG 0.646117 6_1:+95028062 None:intergenic
GGAAGCGTTTGTGCAAATGT+GGG 0.646979 6_1:-95029136 Msa0899700:CDS
GGAGCTATTCTTCGGCACCA+CGG 0.660013 6_1:-95028106 Msa0899700:CDS
TCTCGGAAGGAGATTGAGGG+AGG 0.670087 6_1:-95028316 Msa0899700:CDS
CAGTGGCTAGGGCTTCAGGT+TGG 0.695715 6_1:-95028200 Msa0899700:CDS
ACTTCCGTTTCTGAAGACAG+TGG 0.697797 6_1:-95028217 Msa0899700:CDS
TTCATAAAGGACACAATCGT+AGG 0.698872 6_1:+95029640 None:intergenic
AAGATTGCCATACTTTACGG+GGG 0.703694 6_1:-95028354 Msa0899700:CDS
ATCAGAGACCCAATTCACCG+TGG 0.790349 6_1:+95028089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGAAATTTTATGAAAAT+TGG - chr6_1:95029229-95029248 Msa0899700:CDS 10.0%
!!! TTATGTTCAAATTTTTATTT+AGG - chr6_1:95029783-95029802 Msa0899700:intron 10.0%
!! TTATTATGAACTAAATATTT+CGG + chr6_1:95029908-95029927 None:intergenic 10.0%
!!! ATATTTAGTTCATAATAAAA+TGG - chr6_1:95029910-95029929 Msa0899700:intron 10.0%
!! TAAACATTTATGTAAGTATT+TGG + chr6_1:95029306-95029325 None:intergenic 15.0%
!! AATTATTACCATATGATTTA+CGG - chr6_1:95032640-95032659 Msa0899700:five_prime_UTR 15.0%
!!! AAAACAAGTTTTGATTTTGA+GGG + chr6_1:95027970-95027989 None:intergenic 20.0%
!!! TTTCTTGTTTTTTTCTCAAT+TGG - chr6_1:95028184-95028203 Msa0899700:CDS 20.0%
!!! TTCTTGTTTTTTTCTCAATT+GGG - chr6_1:95028185-95028204 Msa0899700:CDS 20.0%
!! TTACAATCAAAGTTAAAATG+AGG - chr6_1:95029162-95029181 Msa0899700:CDS 20.0%
!! GAAAGATTATGAAGAATTAT+GGG - chr6_1:95029584-95029603 Msa0899700:CDS 20.0%
!!! ATAGTTTTAGATATTTATGC+AGG - chr6_1:95029687-95029706 Msa0899700:intron 20.0%
!! TGTACATCTATTGATATTAT+TGG - chr6_1:95029815-95029834 Msa0899700:intron 20.0%
!! AAAAGTTAATATACTGCTTT+GGG + chr6_1:95030689-95030708 None:intergenic 20.0%
!! TAAAAGTTAATATACTGCTT+TGG + chr6_1:95030690-95030709 None:intergenic 20.0%
!!! AAGTTTATTTTCTTTTGCAA+AGG - chr6_1:95031124-95031143 Msa0899700:intron 20.0%
!! TTAAAAGATGATATGATCAT+TGG - chr6_1:95032377-95032396 Msa0899700:CDS 20.0%
! ATCATAGTACAACACAAAAA+TGG - chr6_1:95027794-95027813 Msa0899700:three_prime_UTR 25.0%
!!! CAAAACAAGTTTTGATTTTG+AGG + chr6_1:95027971-95027990 None:intergenic 25.0%
!!! ATGTTATTTGTTGTTGTTGT+AGG - chr6_1:95028241-95028260 Msa0899700:CDS 25.0%
!!! TTGTCATTTTTTTTCCCTTT+TGG - chr6_1:95028317-95028336 Msa0899700:CDS 25.0%
!!! TTTTTTTCCCTTTTGGAATT+TGG - chr6_1:95028324-95028343 Msa0899700:CDS 25.0%
! AAAACTACCAAATTCCAAAA+GGG + chr6_1:95028334-95028353 None:intergenic 25.0%
! TAAAACTACCAAATTCCAAA+AGG + chr6_1:95028335-95028354 None:intergenic 25.0%
!!! GTTTTAGCTTAATACCTTTT+TGG - chr6_1:95028349-95028368 Msa0899700:CDS 25.0%
!! CTTAAGTTGTTTATCCAAAA+AGG + chr6_1:95028366-95028385 None:intergenic 25.0%
! ATCTGTTTCCTTATTAGTTA+TGG - chr6_1:95028438-95028457 Msa0899700:CDS 25.0%
! TCTGTTTCCTTATTAGTTAT+GGG - chr6_1:95028439-95028458 Msa0899700:CDS 25.0%
! TATTTATATGTTGTTGACCA+TGG - chr6_1:95028837-95028856 Msa0899700:intron 25.0%
! AAATCAATCAGCGAAAAAAA+GGG + chr6_1:95028917-95028936 None:intergenic 25.0%
! AAAATCAATCAGCGAAAAAA+AGG + chr6_1:95028918-95028937 None:intergenic 25.0%
!!! TTTTTTCGCTGATTGATTTT+TGG - chr6_1:95028918-95028937 Msa0899700:intron 25.0%
! TTTCAGTAATGTTATTAGTG+TGG - chr6_1:95029071-95029090 Msa0899700:CDS 25.0%
! TTCAGTAATGTTATTAGTGT+GGG - chr6_1:95029072-95029091 Msa0899700:CDS 25.0%
! GGAAAGATTATGAAGAATTA+TGG - chr6_1:95029583-95029602 Msa0899700:CDS 25.0%
!!! TTGATATTATTGGTGATGAT+CGG - chr6_1:95029825-95029844 Msa0899700:intron 25.0%
! AATAATATTAGCTGTACCTT+TGG - chr6_1:95030068-95030087 Msa0899700:intron 25.0%
! GATAAATATGATTCTCACAT+CGG - chr6_1:95030210-95030229 Msa0899700:intron 25.0%
! AAAGTTAATATACTGCTTTG+GGG + chr6_1:95030688-95030707 None:intergenic 25.0%
!!! TTAACCTTTTTTTAGCCATA+GGG + chr6_1:95030835-95030854 None:intergenic 25.0%
!!! TTTAACCTTTTTTTAGCCAT+AGG + chr6_1:95030836-95030855 None:intergenic 25.0%
! ATGGCTAAAAAAAGGTTAAA+AGG - chr6_1:95030836-95030855 Msa0899700:intron 25.0%
!!! ACTAGAGGTTTTAACATTAT+TGG - chr6_1:95030866-95030885 Msa0899700:intron 25.0%
! AATAAGATTGCCATACTTTA+CGG - chr6_1:95032054-95032073 Msa0899700:intron 25.0%
!! CTCTTAAAACTTTGAGAAAT+GGG + chr6_1:95032509-95032528 None:intergenic 25.0%
! ATGCATGTAATCATAAGAAA+TGG - chr6_1:95032558-95032577 Msa0899700:CDS 25.0%
AAGAAAAGAAGGAAAAGCTT+TGG + chr6_1:95027913-95027932 None:intergenic 30.0%
ATTTCATGAGGTTCAAGAAA+GGG - chr6_1:95028054-95028073 Msa0899700:CDS 30.0%
GATATAAGAAGAAGTTTCCT+TGG - chr6_1:95028117-95028136 Msa0899700:CDS 30.0%
TTTAAACCAACCTGAAGAAA+AGG + chr6_1:95028155-95028174 None:intergenic 30.0%
AGACAATACATACTCTTCAT+CGG + chr6_1:95028888-95028907 None:intergenic 30.0%
!! TAGTTTTCAAGAGCAACTTA+AGG - chr6_1:95028947-95028966 Msa0899700:intron 30.0%
ATCCAACAAAAGAAATGGAT+AGG + chr6_1:95029455-95029474 None:intergenic 30.0%
! ATCCATTTCTTTTGTTGGAT+AGG - chr6_1:95029455-95029474 Msa0899700:CDS 30.0%
ATTATCATCCTGACATTCAA+CGG - chr6_1:95029942-95029961 Msa0899700:intron 30.0%
! ATTTTGTGAAGTCACGAATA+TGG - chr6_1:95030148-95030167 Msa0899700:intron 30.0%
! CTTAAGAGCATAAATCCAAA+GGG + chr6_1:95030309-95030328 None:intergenic 30.0%
! TCTTAAGAGCATAAATCCAA+AGG + chr6_1:95030310-95030329 None:intergenic 30.0%
ACTTCACTTAACTTCTTCAA+TGG + chr6_1:95030413-95030432 None:intergenic 30.0%
AATACCTGCTCATCAAAATT+AGG + chr6_1:95030724-95030743 None:intergenic 30.0%
TTAAAAGGATCACAAACTAG+AGG - chr6_1:95030851-95030870 Msa0899700:intron 30.0%
GGTAATTGAGACAATCTAAT+TGG + chr6_1:95030934-95030953 None:intergenic 30.0%
TCAATTACCAGTCTGAAAAT+TGG - chr6_1:95030945-95030964 Msa0899700:intron 30.0%
AAAATTAGCAACTCAAAACC+TGG + chr6_1:95031009-95031028 None:intergenic 30.0%
TATGACTCTTAGATCTACAA+AGG - chr6_1:95031148-95031167 Msa0899700:intron 30.0%
! ATGGAGATCTAAGCTTTTAT+GGG - chr6_1:95031208-95031227 Msa0899700:intron 30.0%
! TTGTCATTTAAGTGCATGTT+TGG - chr6_1:95031487-95031506 Msa0899700:intron 30.0%
! CTACTGGTTGAAATTCATAT+AGG - chr6_1:95031685-95031704 Msa0899700:intron 30.0%
GAGGAGAAATCTGTTATAAT+TGG - chr6_1:95031976-95031995 Msa0899700:intron 30.0%
ATAAGATTGCCATACTTTAC+GGG - chr6_1:95032055-95032074 Msa0899700:intron 30.0%
! ATCAAGTTTCCTTTTCCTTA+TGG + chr6_1:95032166-95032185 None:intergenic 30.0%
ATGTTACCACAGAAATTCTT+CGG - chr6_1:95032343-95032362 Msa0899700:CDS 30.0%
! GCTCTTAAAACTTTGAGAAA+TGG + chr6_1:95032510-95032529 None:intergenic 30.0%
! ATGTTGTTGGATTTTGTTGC+AGG + chr6_1:95027776-95027795 None:intergenic 35.0%
GTGTTGTACTATGATGTTGT+TGG + chr6_1:95027789-95027808 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + chr6_1:95027849-95027868 None:intergenic 35.0%
! GCTTTTCCTTCTTTTCTTGT+TGG - chr6_1:95027915-95027934 Msa0899700:three_prime_UTR 35.0%
GGAAATCCAACAAGAAAAGA+AGG + chr6_1:95027924-95027943 None:intergenic 35.0%
! GAATTTGAAAAGGGTGGTTT+TGG + chr6_1:95027945-95027964 None:intergenic 35.0%
TTGAGGGTGGAATTTGAAAA+GGG + chr6_1:95027954-95027973 None:intergenic 35.0%
TTTGAGGGTGGAATTTGAAA+AGG + chr6_1:95027955-95027974 None:intergenic 35.0%
!!! ACAAGTTTTGATTTTGAGGG+TGG + chr6_1:95027967-95027986 None:intergenic 35.0%
!! TCATCGACTCAACAAGAAAA+TGG - chr6_1:95027993-95028012 Msa0899700:three_prime_UTR 35.0%
!! CATCGACTCAACAAGAAAAT+GGG - chr6_1:95027994-95028013 Msa0899700:three_prime_UTR 35.0%
TTGCTTTGTAGAAACTGTTC+TGG + chr6_1:95028023-95028042 None:intergenic 35.0%
ATTCCATTGCAGATTTCATG+AGG - chr6_1:95028042-95028061 Msa0899700:exon 35.0%
GATTTCATGAGGTTCAAGAA+AGG - chr6_1:95028053-95028072 Msa0899700:CDS 35.0%
!!! TCTTTTGAAGCCTTTTCTTC+AGG - chr6_1:95028142-95028161 Msa0899700:CDS 35.0%
GAAACAGCCCATAACTAATA+AGG + chr6_1:95028449-95028468 None:intergenic 35.0%
TGCTTTCTGCTTATTTCCAT+AGG + chr6_1:95028491-95028510 None:intergenic 35.0%
TATGGAAATAAGCAGAAAGC+AGG - chr6_1:95028490-95028509 Msa0899700:intron 35.0%
!! AGACTGTTCAAGAGAGTATT+TGG + chr6_1:95028540-95028559 None:intergenic 35.0%
TATATGTTGTTGACCATGGA+TGG - chr6_1:95028841-95028860 Msa0899700:intron 35.0%
GATGGTAGCTGTAACATAAT+TGG - chr6_1:95028859-95028878 Msa0899700:intron 35.0%
!! CGCTGATTGATTTTTGGATT+TGG - chr6_1:95028924-95028943 Msa0899700:intron 35.0%
! AGAGCAACTTAAGGTTTGTT+TGG - chr6_1:95028956-95028975 Msa0899700:intron 35.0%
! AGCCTATCCATTTCTTTTGT+TGG - chr6_1:95029450-95029469 Msa0899700:CDS 35.0%
AGCCTATCCAACAAAAGAAA+TGG + chr6_1:95029460-95029479 None:intergenic 35.0%
AGTCTTAAATCCAAACACTC+TGG - chr6_1:95029494-95029513 Msa0899700:CDS 35.0%
AAGAAATTTGGGTATGGATG+AGG - chr6_1:95029532-95029551 Msa0899700:CDS 35.0%
AGAAATTTGGGTATGGATGA+GGG - chr6_1:95029533-95029552 Msa0899700:CDS 35.0%
!!! ACAATTCACAGGGTTTTTTG+AGG - chr6_1:95029562-95029581 Msa0899700:CDS 35.0%
AAATCAATCATGAGAACAGG+TGG - chr6_1:95029607-95029626 Msa0899700:CDS 35.0%
CTGAGATGAACAAGTAGAAT+TGG - chr6_1:95029652-95029671 Msa0899700:CDS 35.0%
AACCTTATCCATAACCACAT+GGG + chr6_1:95029736-95029755 None:intergenic 35.0%
TAACCTTATCCATAACCACA+TGG + chr6_1:95029737-95029756 None:intergenic 35.0%
TGTGGTTATGGATAAGGTTA+AGG - chr6_1:95029737-95029756 Msa0899700:intron 35.0%
!! ATATTATTGGTGATGATCGG+AGG - chr6_1:95029828-95029847 Msa0899700:intron 35.0%
ACTACATCTCAAACAAACTG+CGG - chr6_1:95030104-95030123 Msa0899700:intron 35.0%
!!! TCACCTAATGGACTACTTTT+GGG - chr6_1:95030274-95030293 Msa0899700:intron 35.0%
TATCCCAAAAGTAGTCCATT+AGG + chr6_1:95030280-95030299 None:intergenic 35.0%
!!! TAATGGACTACTTTTGGGAT+AGG - chr6_1:95030279-95030298 Msa0899700:intron 35.0%
CATTGAGACTAATGACTTCT+CGG - chr6_1:95030340-95030359 Msa0899700:intron 35.0%
CACTTAACTTCTTCAATGGT+CGG + chr6_1:95030409-95030428 None:intergenic 35.0%
GAAGAAGTTAAGTGAAGTCA+CGG - chr6_1:95030415-95030434 Msa0899700:intron 35.0%
ACGTTTAAGTCTCACTTCTT+AGG + chr6_1:95030528-95030547 None:intergenic 35.0%
AAGTGAGACTTAAACGTCAA+AGG - chr6_1:95030531-95030550 Msa0899700:intron 35.0%
AGTGAGACTTAAACGTCAAA+GGG - chr6_1:95030532-95030551 Msa0899700:intron 35.0%
TCACATAACACTAGTCCATT+AGG + chr6_1:95030566-95030585 None:intergenic 35.0%
GTTATGAGCATAAGCCTAAA+GGG + chr6_1:95030597-95030616 None:intergenic 35.0%
AGTTATGAGCATAAGCCTAA+AGG + chr6_1:95030598-95030617 None:intergenic 35.0%
!! TGATCCTAATTTTGATGAGC+AGG - chr6_1:95030717-95030736 Msa0899700:intron 35.0%
! TTTGATGAGCAGGTATTTTC+TGG - chr6_1:95030727-95030746 Msa0899700:intron 35.0%
TTCATAAAGGACACAATCGT+AGG + chr6_1:95030774-95030793 None:intergenic 35.0%
CGATTGTGTCCTTTATGAAA+TGG - chr6_1:95030775-95030794 Msa0899700:intron 35.0%
TGCTAGCTACCATTTCATAA+AGG + chr6_1:95030787-95030806 None:intergenic 35.0%
TTATGAAATGGTAGCTAGCA+AGG - chr6_1:95030787-95030806 Msa0899700:intron 35.0%
AGAGAATATGAGAAACCCTA+TGG - chr6_1:95030817-95030836 Msa0899700:intron 35.0%
GAAACCCTATGGCTAAAAAA+AGG - chr6_1:95030828-95030847 Msa0899700:intron 35.0%
AACTCAAAACCTGGAGTAAT+TGG + chr6_1:95031000-95031019 None:intergenic 35.0%
!! CTTTTGTTTCAGCAAGCAAA+AGG - chr6_1:95031098-95031117 Msa0899700:intron 35.0%
CATAAAAGCTTAGATCTCCA+TGG + chr6_1:95031209-95031228 None:intergenic 35.0%
! CATGGAGATCTAAGCTTTTA+TGG - chr6_1:95031207-95031226 Msa0899700:intron 35.0%
ATTTCAGGATATTCTGATGC+TGG + chr6_1:95031305-95031324 None:intergenic 35.0%
CTTGACAATGCTTCTATTTC+AGG + chr6_1:95031320-95031339 None:intergenic 35.0%
!! CTGAAATAGAAGCATTGTCA+AGG - chr6_1:95031318-95031337 Msa0899700:intron 35.0%
AGATCTTCCCAAAATCATTG+TGG + chr6_1:95031545-95031564 None:intergenic 35.0%
TGAGTTTGACGAAATCATGT+CGG + chr6_1:95031585-95031604 None:intergenic 35.0%
!!! AGATCCCACTGTTTTAGAAA+CGG + chr6_1:95031732-95031751 None:intergenic 35.0%
!! TTCAACCAAGTTTTATGTCC+TGG + chr6_1:95031833-95031852 None:intergenic 35.0%
ATGCAATCTCTTGAATTGCA+CGG + chr6_1:95031857-95031876 None:intergenic 35.0%
GTACAGCTTGACACAAAATA+CGG - chr6_1:95031945-95031964 Msa0899700:intron 35.0%
CTCAGAAAAGCAATGGATAA+GGG - chr6_1:95032027-95032046 Msa0899700:intron 35.0%
TAAGATTGCCATACTTTACG+GGG - chr6_1:95032056-95032075 Msa0899700:intron 35.0%
!! AATGTCTGATAACGGTTCAA+CGG + chr6_1:95032237-95032256 None:intergenic 35.0%
AACATACCGAAGAATTTCTG+TGG + chr6_1:95032352-95032371 None:intergenic 35.0%
ACAGAAATTCTTCGGTATGT+TGG - chr6_1:95032351-95032370 Msa0899700:CDS 35.0%
!!! AGTTTTAAGAGCTACCTCTT+TGG - chr6_1:95032518-95032537 Msa0899700:CDS 35.0%
!!! GTTTTAAGAGCTACCTCTTT+GGG - chr6_1:95032519-95032538 Msa0899700:CDS 35.0%
!! TTTTAAGAGCTACCTCTTTG+GGG - chr6_1:95032520-95032539 Msa0899700:CDS 35.0%
ACTCAAGTGTTCTACATATG+TGG - chr6_1:95032584-95032603 Msa0899700:CDS 35.0%
CTTGTGAACCGTAAATCATA+TGG + chr6_1:95032651-95032670 None:intergenic 35.0%
!! GGAAAAGCTTTGGAAGTTGA+AGG + chr6_1:95027903-95027922 None:intergenic 40.0%
GAACCTCATGAAATCTGCAA+TGG + chr6_1:95028048-95028067 None:intergenic 40.0%
AGGTTCAAGAAAGGGATTGA+TGG - chr6_1:95028062-95028081 Msa0899700:CDS 40.0%
! AAAGGGATTGATGGTTCTAC+TGG - chr6_1:95028071-95028090 Msa0899700:CDS 40.0%
AAAGGCTTCAAAAGAGACCA+AGG + chr6_1:95028137-95028156 None:intergenic 40.0%
! TTGAAGCCTTTTCTTCAGGT+TGG - chr6_1:95028146-95028165 Msa0899700:CDS 40.0%
! GCTGTTTCCATAAGCTATCA+TGG - chr6_1:95028461-95028480 Msa0899700:CDS 40.0%
ACAGCAACTTAGAGCATGTT+TGG - chr6_1:95028621-95028640 Msa0899700:intron 40.0%
TATGTTACAGCTACCATCCA+TGG + chr6_1:95028857-95028876 None:intergenic 40.0%
ATGTTATTAGTGTGGGCACT+TGG - chr6_1:95029079-95029098 Msa0899700:CDS 40.0%
AAACACTCTCACTGAGTGTT+TGG - chr6_1:95029393-95029412 Msa0899700:intron 40.0%
GTTAGGCGGCAAAGAAATTT+GGG - chr6_1:95029521-95029540 Msa0899700:CDS 40.0%
GAAATTTGGGTATGGATGAG+GGG - chr6_1:95029534-95029553 Msa0899700:CDS 40.0%
GGGAAATCAATCATGAGAAC+AGG - chr6_1:95029604-95029623 Msa0899700:CDS 40.0%
AATCATGAGAACAGGTGGAT+AGG - chr6_1:95029612-95029631 Msa0899700:CDS 40.0%
TGATTAGCACTCAGTGAGAT+TGG + chr6_1:95029763-95029782 None:intergenic 40.0%
TAGGCTTATAAGCCTCACTT+AGG + chr6_1:95030245-95030264 None:intergenic 40.0%
TAAGTGAGGCTTATAAGCCT+AGG - chr6_1:95030244-95030263 Msa0899700:intron 40.0%
AAGTGAGGCTTATAAGCCTA+GGG - chr6_1:95030245-95030264 Msa0899700:intron 40.0%
CATTAGGTGAGAAAATCCCT+AGG + chr6_1:95030264-95030283 None:intergenic 40.0%
! CTAGGGATTTTCTCACCTAA+TGG - chr6_1:95030262-95030281 Msa0899700:intron 40.0%
!!! CTCACCTAATGGACTACTTT+TGG - chr6_1:95030273-95030292 Msa0899700:intron 40.0%
! CGAGAAGTCATTAGTCTCAA+TGG + chr6_1:95030342-95030361 None:intergenic 40.0%
CATTGAGTGAAAGTTGTCGT+AGG - chr6_1:95030448-95030467 Msa0899700:intron 40.0%
CAAAGGGTTCTTTCACCTAA+TGG - chr6_1:95030548-95030567 Msa0899700:intron 40.0%
ATGTGATGAGCTTTCCCTTT+AGG - chr6_1:95030580-95030599 Msa0899700:intron 40.0%
GAATTTGAGCCATCTGTCTT+TGG + chr6_1:95030898-95030917 None:intergenic 40.0%
! CATGTTGCCAATTTTCAGAC+TGG + chr6_1:95030955-95030974 None:intergenic 40.0%
CAAAACCTGGAGTAATTGGA+AGG + chr6_1:95030996-95031015 None:intergenic 40.0%
AATGTTGCAGCCTTCAATTC+CGG - chr6_1:95031172-95031191 Msa0899700:intron 40.0%
TCAAGATCTTCCGGAATTGA+AGG + chr6_1:95031185-95031204 None:intergenic 40.0%
ATGAGAAAAAGGCCAACAAG+CGG + chr6_1:95031254-95031273 None:intergenic 40.0%
!!! CTTGTTGGCCTTTTTCTCAT+CGG - chr6_1:95031254-95031273 Msa0899700:intron 40.0%
AAACGCTTCCGATGAGAAAA+AGG + chr6_1:95031265-95031284 None:intergenic 40.0%
TGATGTAAGTGCAGCAATGA+AGG - chr6_1:95031343-95031362 Msa0899700:intron 40.0%
! CAGATGTTAGTCTCTTTGCA+AGG + chr6_1:95031373-95031392 None:intergenic 40.0%
AGATGCACACAGAAATGAGA+GGG + chr6_1:95031403-95031422 None:intergenic 40.0%
ATAGAAGCTCTTGTTCCTGT+AGG - chr6_1:95031436-95031455 Msa0899700:intron 40.0%
TAGAAGCTCTTGTTCCTGTA+GGG - chr6_1:95031437-95031456 Msa0899700:intron 40.0%
TAAGTGCATGTTTGGATCCA+TGG - chr6_1:95031495-95031514 Msa0899700:intron 40.0%
! ACAGTGTGCCACAATGATTT+TGG - chr6_1:95031534-95031553 Msa0899700:intron 40.0%
! CAGTGTGCCACAATGATTTT+GGG - chr6_1:95031535-95031554 Msa0899700:intron 40.0%
GACAACATAGTCTCTTCTAC+TGG - chr6_1:95031669-95031688 Msa0899700:intron 40.0%
! ATAGGTCCCGCATAATTTTG+TGG - chr6_1:95031703-95031722 Msa0899700:intron 40.0%
! TAGGTCCCGCATAATTTTGT+GGG - chr6_1:95031704-95031723 Msa0899700:intron 40.0%
!!! TCCTTTTGAAAGTGTTGTCC+AGG - chr6_1:95031812-95031831 Msa0899700:intron 40.0%
TCCTGGACAACACTTTCAAA+AGG + chr6_1:95031816-95031835 None:intergenic 40.0%
GTTGTCCAGGACATAAAACT+TGG - chr6_1:95031825-95031844 Msa0899700:intron 40.0%
!! CCTTATCCATTGCTTTTCTG+AGG + chr6_1:95032029-95032048 None:intergenic 40.0%
CCTCAGAAAAGCAATGGATA+AGG - chr6_1:95032026-95032045 Msa0899700:intron 40.0%
AAGATTGCCATACTTTACGG+GGG - chr6_1:95032057-95032076 Msa0899700:intron 40.0%
GTTGAACCGTTATCAGACAT+TGG - chr6_1:95032236-95032255 Msa0899700:intron 40.0%
GCAAAGCCAATGTCTGATAA+CGG + chr6_1:95032245-95032264 None:intergenic 40.0%
! GCTCATCTTTTCGTCAATCT+TGG - chr6_1:95032263-95032282 Msa0899700:intron 40.0%
! CATCTTTTCGTCAATCTTGG+CGG - chr6_1:95032266-95032285 Msa0899700:intron 40.0%
!!! TGGTTTTGGGAGCTATTCTT+CGG - chr6_1:95032297-95032316 Msa0899700:CDS 40.0%
AGGGTGGAATTTGAAAAGGG+TGG + chr6_1:95027951-95027970 None:intergenic 45.0%
AGGCTCTCCATGATAGCTTA+TGG + chr6_1:95028471-95028490 None:intergenic 45.0%
AAGCTATCATGGAGAGCCTA+TGG - chr6_1:95028472-95028491 Msa0899700:intron 45.0%
!! GCTTCTCTGAAGCTAGTCAA+TGG + chr6_1:95028736-95028755 None:intergenic 45.0%
CGTTAGGCGGCAAAGAAATT+TGG - chr6_1:95029520-95029539 Msa0899700:CDS 45.0%
GCGGCAAAGAAATTTGGGTA+TGG - chr6_1:95029526-95029545 Msa0899700:CDS 45.0%
AGGGGCTGATACAATTCACA+GGG - chr6_1:95029552-95029571 Msa0899700:CDS 45.0%
AGCCCATGTGGTTATGGATA+AGG - chr6_1:95029731-95029750 Msa0899700:intron 45.0%
TATTAGCTGTACCTTTGGCG+TGG - chr6_1:95030073-95030092 Msa0899700:intron 45.0%
! TTTGGGATAGGTTCTCCCTT+TGG - chr6_1:95030291-95030310 Msa0899700:intron 45.0%
GAGACTAATGACTTCTCGGT+CGG - chr6_1:95030344-95030363 Msa0899700:intron 45.0%
TAATGACTTCTCGGTCGGAA+AGG - chr6_1:95030349-95030368 Msa0899700:intron 45.0%
AATGACTTCTCGGTCGGAAA+GGG - chr6_1:95030350-95030369 Msa0899700:intron 45.0%
! TACTTGCGAAGGGTTCTGAT+CGG - chr6_1:95030374-95030393 Msa0899700:intron 45.0%
TGGATGCATCCAAAGACAGA+TGG - chr6_1:95030886-95030905 Msa0899700:intron 45.0%
GACAGATGGCTCAAATTCTC+AGG - chr6_1:95030900-95030919 Msa0899700:intron 45.0%
TGAGACCTTCCAATTACTCC+AGG - chr6_1:95030988-95031007 Msa0899700:intron 45.0%
TTCCGGAAGATCTTGATCCA+TGG - chr6_1:95031189-95031208 Msa0899700:intron 45.0%
CTCCATGGATCAAGATCTTC+CGG + chr6_1:95031194-95031213 None:intergenic 45.0%
!! GGAAGCGTTTGTGCAAATGT+GGG - chr6_1:95031275-95031294 Msa0899700:intron 45.0%
GAGATGCACACAGAAATGAG+AGG + chr6_1:95031404-95031423 None:intergenic 45.0%
GTTTGGATCCATGGTGAGTT+TGG - chr6_1:95031504-95031523 Msa0899700:intron 45.0%
TGATTCAGCCAAACTCACCA+TGG + chr6_1:95031515-95031534 None:intergenic 45.0%
! AGGTCCCGCATAATTTTGTG+GGG - chr6_1:95031705-95031724 Msa0899700:intron 45.0%
ACGGACCCCACAAAATTATG+CGG + chr6_1:95031713-95031732 None:intergenic 45.0%
!! GGGTCCGTTTCTAAAACAGT+GGG - chr6_1:95031725-95031744 Msa0899700:intron 45.0%
GACACAAAATACGGCAGATG+TGG - chr6_1:95031954-95031973 Msa0899700:intron 45.0%
ACAAAATACGGCAGATGTGG+AGG - chr6_1:95031957-95031976 Msa0899700:intron 45.0%
CGAGAACCTCAGAAAAGCAA+TGG - chr6_1:95032020-95032039 Msa0899700:intron 45.0%
CAGCTTGGTCCATAAGGAAA+AGG - chr6_1:95032154-95032173 Msa0899700:intron 45.0%
! ACTTCCGTTTCTGAAGACAG+TGG - chr6_1:95032194-95032213 Msa0899700:intron 45.0%
CTAGCCACTGTCTTCAGAAA+CGG + chr6_1:95032201-95032220 None:intergenic 45.0%
! GTTTCTGAAGACAGTGGCTA+GGG - chr6_1:95032200-95032219 Msa0899700:intron 45.0%
!! GCACTTCTGAAGCTCTGTGA+AGG - chr6_1:95028675-95028694 Msa0899700:intron 50.0%
! CCTAACGAGTCCAGAGTGTT+TGG + chr6_1:95029507-95029526 None:intergenic 50.0%
CCAAACACTCTGGACTCGTT+AGG - chr6_1:95029504-95029523 Msa0899700:CDS 50.0%
AACACTCTGGACTCGTTAGG+CGG - chr6_1:95029507-95029526 Msa0899700:CDS 50.0%
GAGGGGCTGATACAATTCAC+AGG - chr6_1:95029551-95029570 Msa0899700:CDS 50.0%
ATGAGAACAGGTGGATAGGC+AGG - chr6_1:95029616-95029635 Msa0899700:CDS 50.0%
ATGCAGGTCTAGCAAACCAC+TGG - chr6_1:95029703-95029722 Msa0899700:intron 50.0%
GTTTGCAGCCCATGTGGTTA+TGG - chr6_1:95029725-95029744 Msa0899700:intron 50.0%
AGTTCAGCAATCCACGCCAA+AGG + chr6_1:95030087-95030106 None:intergenic 50.0%
CGGAAAGTCTCACCTAAGTG+AGG - chr6_1:95030230-95030249 Msa0899700:intron 50.0%
!! AGGCATCGATCCTCGAATGA+TGG - chr6_1:95030468-95030487 Msa0899700:intron 50.0%
! ATCCTCGAATGATGGTGCGT+TGG - chr6_1:95030476-95030495 Msa0899700:intron 50.0%
TTGGTGTGAGTCACACACTG+TGG - chr6_1:95030495-95030514 Msa0899700:intron 50.0%
CACAAGTGCTCGTTGATGCA+TGG - chr6_1:95030629-95030648 Msa0899700:intron 50.0%
!! GTATTTTCTGGCCCTCCAGA+AGG - chr6_1:95030739-95030758 Msa0899700:intron 50.0%
! GTACTTCCTATGCCGCTTGT+TGG - chr6_1:95031239-95031258 Msa0899700:intron 50.0%
AAAAGGCCAACAAGCGGCAT+AGG + chr6_1:95031248-95031267 None:intergenic 50.0%
!! CGGAAGCGTTTGTGCAAATG+TGG - chr6_1:95031274-95031293 Msa0899700:intron 50.0%
CTCGTAGCTCAAAACCCTAC+AGG + chr6_1:95031454-95031473 None:intergenic 50.0%
CGGACCCCACAAAATTATGC+GGG + chr6_1:95031712-95031731 None:intergenic 50.0%
!! GGGGTCCGTTTCTAAAACAG+TGG - chr6_1:95031724-95031743 Msa0899700:intron 50.0%
ATTGCCATACTTTACGGGGG+TGG - chr6_1:95032060-95032079 Msa0899700:intron 50.0%
CTCAATCTCCTTCCGAGATC+CGG + chr6_1:95032093-95032112 None:intergenic 50.0%
GGATCTCGGAAGGAGATTGA+GGG - chr6_1:95032092-95032111 Msa0899700:intron 50.0%
GAGTTCGATTTAGTCCCGTC+TGG - chr6_1:95032117-95032136 Msa0899700:intron 50.0%
GGGTAACAGCTTGGTCCATA+AGG - chr6_1:95032148-95032167 Msa0899700:CDS 50.0%
! CGTTTCTGAAGACAGTGGCT+AGG - chr6_1:95032199-95032218 Msa0899700:intron 50.0%
! CTTTTCGTCAATCTTGGCGG+TGG - chr6_1:95032269-95032288 Msa0899700:intron 50.0%
ATCAGAGACCCAATTCACCG+TGG + chr6_1:95032325-95032344 None:intergenic 50.0%
!! ACCTCTTTGGGGCATGGAAA+TGG - chr6_1:95032531-95032550 Msa0899700:CDS 50.0%
!! CCTCTTTGGGGCATGGAAAT+GGG - chr6_1:95032532-95032551 Msa0899700:CDS 50.0%
ATCCTGACATTCAACGGCCG+CGG - chr6_1:95029948-95029967 Msa0899700:intron 55.0%
TCGGAAAGGGCTACTTGCGA+AGG - chr6_1:95030363-95030382 Msa0899700:intron 55.0%
CGGAAAGGGCTACTTGCGAA+GGG - chr6_1:95030364-95030383 Msa0899700:intron 55.0%
! TTGCGAAGGGTTCTGATCGG+TGG - chr6_1:95030377-95030396 Msa0899700:intron 55.0%
! GAAGGGTTCTGATCGGTGGA+GGG - chr6_1:95030381-95030400 Msa0899700:intron 55.0%
CACCAACGCACCATCATTCG+AGG + chr6_1:95030481-95030500 None:intergenic 55.0%
GGACTCAAGCTCCTTCTGGA+GGG + chr6_1:95030753-95030772 None:intergenic 55.0%
AGGACTCAAGCTCCTTCTGG+AGG + chr6_1:95030754-95030773 None:intergenic 55.0%
CGTAGGACTCAAGCTCCTTC+TGG + chr6_1:95030757-95030776 None:intergenic 55.0%
CGGATCTCGGAAGGAGATTG+AGG - chr6_1:95032091-95032110 Msa0899700:intron 55.0%
TCTCGGAAGGAGATTGAGGG+AGG - chr6_1:95032095-95032114 Msa0899700:intron 55.0%
CGATTTAGTCCCGTCTGGTG+TGG - chr6_1:95032122-95032141 Msa0899700:intron 55.0%
TTACCCACTCCACACCAGAC+GGG + chr6_1:95032134-95032153 None:intergenic 55.0%
GTTACCCACTCCACACCAGA+CGG + chr6_1:95032135-95032154 None:intergenic 55.0%
GTGTGGAGTGGGTAACAGCT+TGG - chr6_1:95032139-95032158 Msa0899700:CDS 55.0%
AAGACAGTGGCTAGGGCTTC+AGG - chr6_1:95032207-95032226 Msa0899700:intron 55.0%
CAATCTTGGCGGTGGATCTG+TGG - chr6_1:95032277-95032296 Msa0899700:CDS 55.0%
! TGGCGGTGGATCTGTGGTTT+TGG - chr6_1:95032283-95032302 Msa0899700:CDS 55.0%
! GGCGGTGGATCTGTGGTTTT+GGG - chr6_1:95032284-95032303 Msa0899700:CDS 55.0%
GGAGCTATTCTTCGGCACCA+CGG - chr6_1:95032305-95032324 Msa0899700:CDS 55.0%
TCTTCGGCACCACGGTGAAT+TGG - chr6_1:95032313-95032332 Msa0899700:CDS 55.0%
CTTCGGCACCACGGTGAATT+GGG - chr6_1:95032314-95032333 Msa0899700:CDS 55.0%
!! AGAGCTACCTCTTTGGGGCA+TGG - chr6_1:95032525-95032544 Msa0899700:CDS 55.0%
CCCATTTCCATGCCCCAAAG+AGG + chr6_1:95032535-95032554 None:intergenic 55.0%
! CCACATGGGCTGCAAACCAG+TGG + chr6_1:95029722-95029741 None:intergenic 60.0%
!! CCACTGGTTTGCAGCCCATG+TGG - chr6_1:95029719-95029738 Msa0899700:intron 60.0%
TCCTGACATTCAACGGCCGC+GGG - chr6_1:95029949-95029968 Msa0899700:intron 60.0%
! CGAAGGGTTCTGATCGGTGG+AGG - chr6_1:95030380-95030399 Msa0899700:intron 60.0%
GTGGCCACCCCCGTAAAGTA+TGG + chr6_1:95032067-95032086 None:intergenic 60.0%
TCCTTCCGAGATCCGGCATG+TGG + chr6_1:95032086-95032105 None:intergenic 60.0%
TAGTCCCGTCTGGTGTGGAG+TGG - chr6_1:95032127-95032146 Msa0899700:intron 60.0%
AGTCCCGTCTGGTGTGGAGT+GGG - chr6_1:95032128-95032147 Msa0899700:intron 60.0%
CAGTGGCTAGGGCTTCAGGT+TGG - chr6_1:95032211-95032230 Msa0899700:intron 60.0%
CCTGACATTCAACGGCCGCG+GGG - chr6_1:95029950-95029969 Msa0899700:intron 65.0%
CTGACATTCAACGGCCGCGG+GGG - chr6_1:95029951-95029970 Msa0899700:intron 65.0%
TTACGGGGGTGGCCACATGC+CGG - chr6_1:95032071-95032090 Msa0899700:intron 65.0%
GGTGGCCACATGCCGGATCT+CGG - chr6_1:95032078-95032097 Msa0899700:intron 65.0%
GCCACATGCCGGATCTCGGA+AGG - chr6_1:95032082-95032101 Msa0899700:intron 65.0%
CCCCGCGGCCGTTGAATGTC+AGG + chr6_1:95029953-95029972 None:intergenic 70.0%
ACATTCAACGGCCGCGGGGG+TGG - chr6_1:95029954-95029973 Msa0899700:intron 70.0%
CATTCAACGGCCGCGGGGGT+GGG - chr6_1:95029955-95029974 Msa0899700:intron 70.0%
ATTCAACGGCCGCGGGGGTG+GGG - chr6_1:95029956-95029975 Msa0899700:intron 70.0%
TTCAACGGCCGCGGGGGTGG+GGG - chr6_1:95029957-95029976 Msa0899700:intron 75.0%
! TCAACGGCCGCGGGGGTGGG+GGG - chr6_1:95029958-95029977 Msa0899700:intron 80.0%
! CTTCCCTCCCCCCACCCCCG+CGG + chr6_1:95029968-95029987 None:intergenic 80.0%
! ACGGCCGCGGGGGTGGGGGG+AGG - chr6_1:95029961-95029980 Msa0899700:intron 90.0%
! CGGCCGCGGGGGTGGGGGGA+GGG - chr6_1:95029962-95029981 Msa0899700:intron 90.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95027750 95032683 95027750 ID=Msa0899700;Name=Msa0899700
chr6_1 mRNA 95027750 95032683 95027750 ID=Msa0899700-mRNA-1;Parent=Msa0899700;Name=Msa0899700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=63|1|1|1|1|1|5|303|457
chr6_1 exon 95027750 95028482 95027750 ID=Msa0899700-mRNA-1:exon:16306;Parent=Msa0899700-mRNA-1
chr6_1 exon 95029040 95029323 95029040 ID=Msa0899700-mRNA-1:exon:16305;Parent=Msa0899700-mRNA-1
chr6_1 exon 95029424 95029694 95029424 ID=Msa0899700-mRNA-1:exon:16304;Parent=Msa0899700-mRNA-1
chr6_1 exon 95032133 95032170 95032133 ID=Msa0899700-mRNA-1:exon:16303;Parent=Msa0899700-mRNA-1
chr6_1 exon 95032270 95032683 95032270 ID=Msa0899700-mRNA-1:exon:16302;Parent=Msa0899700-mRNA-1
chr6_1 five_prime_UTR 95032621 95032683 95032621 ID=Msa0899700-mRNA-1:five_prime_utr;Parent=Msa0899700-mRNA-1
chr6_1 CDS 95032270 95032620 95032270 ID=Msa0899700-mRNA-1:cds;Parent=Msa0899700-mRNA-1
chr6_1 CDS 95032133 95032170 95032133 ID=Msa0899700-mRNA-1:cds;Parent=Msa0899700-mRNA-1
chr6_1 CDS 95029424 95029694 95029424 ID=Msa0899700-mRNA-1:cds;Parent=Msa0899700-mRNA-1
chr6_1 CDS 95029040 95029323 95029040 ID=Msa0899700-mRNA-1:cds;Parent=Msa0899700-mRNA-1
chr6_1 CDS 95028053 95028482 95028053 ID=Msa0899700-mRNA-1:cds;Parent=Msa0899700-mRNA-1
chr6_1 three_prime_UTR 95027750 95028052 95027750 ID=Msa0899700-mRNA-1:three_prime_utr;Parent=Msa0899700-mRNA-1
Gene Sequence

>Msa0899700

ATGGTGTTAACTTCAATTTCAACAATATCTTCACCATCATCATCATCATCATCATCATCATCATCATCATCATTCTTCTCTGATTCACCTTCAACTTCCAAAGCTTTTCCTTCTTTTCTTGTTGGATTTCCAAAACCACCCTTTTCAAATTCCACCCTCAAAATCAAAACTTGTTTTGCTTCATCGACTCAACAAGAAAATGGGTCACCAGAACAGTTTCTACAAAGCAATTCCATTGCAGATTTCATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAAACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTCTTCAGGTTGATTTGATTTCAACAATTCACATAGCAGATGAAGAGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGATCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTCAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGCAAGCAAAAGGTGAAAGTTTATTTTCTTTTGCAAAGGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCAATTCCGGAAGATCTTGATCCATGGAGATCTAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCTGAAATAGAAGCATTGTCAAGGCTTGATGTAAGTGCAGCAATGAAGGTCTTCCTTGCAAAGAGACTAACATCTGACTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATTGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAGAAAAGCAATGGATAAGGGACAAAATAAGATTGCCATACTTTACGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGGTAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTGGCTAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGCACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>Msa0899700

MVLTSISTISSPSSSSSSSSSSSSFFSDSPSTSKAFPSFLVGFPKPPFSNSTLKIKTCFASSTQQENGSPEQFLQSNSIADFMRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFLQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLRKAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWVTAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN*