AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776290 MtrunA17_Chr5g0431451 83.333 420 50 4 1 420 1 400 0.0 668
Msa0776290 MtrunA17_Chr7g0214541 33.983 359 185 12 63 414 49 362 1.74e-42 154
Msa0776290 MtrunA17_Chr8g0365721 31.805 349 191 10 54 396 60 367 8.59e-42 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776290 AT1G07010.1 56.000 425 144 7 1 419 1 388 7.50e-155 443
Msa0776290 AT1G07010.2 55.529 425 142 8 1 419 1 384 1.24e-150 432
Msa0776290 AT1G07010.3 54.128 436 146 10 1 419 1 399 9.13e-146 421
Msa0776290 AT1G18480.1 33.811 349 183 11 72 413 56 363 2.03e-46 164

Find 142 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAACCTATTGTTGTTAT+TGG 0.130673 5_2:+53855247 Msa0776290:CDS
AGCAACATTGGCCAATTTAT+TGG 0.187565 5_2:+53860929 Msa0776290:three_prime_UTR
TTCTGCTTTGTCTAGGTAAA+TGG 0.194308 5_2:+53857361 Msa0776290:intron
TTACCTCTGGTCTTGAATTA+AGG 0.203062 5_2:-53859285 None:intergenic
CTCAAACTGTTGGGGTAAAT+TGG 0.237790 5_2:+53858994 Msa0776290:CDS
GAAAGGTGGAGCTGTGTTTC+AGG 0.243774 5_2:+53856820 Msa0776290:CDS
GATTTCAGATATGTTGATTC+TGG 0.255499 5_2:+53857412 Msa0776290:CDS
AAGAATAAATGTGGGAAAAT+AGG 0.260313 5_2:+53861156 Msa0776290:three_prime_UTR
TGATGAATGTAGTGATTTCT+TGG 0.278304 5_2:+53857441 Msa0776290:CDS
TCGACGGCTATCCAATAAAT+TGG 0.309617 5_2:-53860940 None:intergenic
ATTGAAAGCAAGGTGAAAAT+AGG 0.318303 5_2:+53861127 Msa0776290:three_prime_UTR
TCATTTGCTTGCATCAAATC+TGG 0.334433 5_2:+53861286 Msa0776290:three_prime_UTR
TTCACTGTATCTGTCCGTTT+TGG 0.334866 5_2:-53859435 None:intergenic
CAGAAAATGAAGAGACAAAA+AGG 0.343519 5_2:-53858310 None:intergenic
AAGAGACTCACCCGATTTGA+TGG 0.345881 5_2:+53858472 Msa0776290:CDS
TAGTGGCAATGAAAGGAATT+TGG 0.346079 5_2:-53858412 None:intergenic
TTGCCCGATCAATCCTCTTT+CGG 0.346959 5_2:+53857861 Msa0776290:CDS
GAAATCCCCTTCCACATTCA+TGG 0.358343 5_2:-53857395 None:intergenic
ACGATAAAGCTAGAGTTATA+AGG 0.381232 5_2:+53859411 Msa0776290:CDS
CCTGTCCTTGCTGCGATCAT+TGG 0.382520 5_2:+53856781 Msa0776290:CDS
CTTTCGGCCTGGTGGGCCAC+TGG 0.385890 5_2:+53857877 Msa0776290:CDS
GATGGATTATGAGGCTAAAC+AGG 0.389943 5_2:+53858490 Msa0776290:CDS
ATGTAAACACCAACTAATAT+TGG 0.393817 5_2:+53861316 Msa0776290:three_prime_UTR
AACAAAGTCAAGAAGTCATT+GGG 0.395929 5_2:+53857546 Msa0776290:CDS
CAATTTACCCCAACAGTTTG+AGG 0.402208 5_2:-53858993 None:intergenic
GACATACTCCTCAAACTGTT+GGG 0.404387 5_2:+53858985 Msa0776290:CDS
AGACAAACAAATGATGTAAC+AGG 0.406354 5_2:+53859483 Msa0776290:three_prime_UTR
GGGGTTATGACAGTGTTGTT+TGG 0.412400 5_2:+53858435 Msa0776290:CDS
GGGTCACCAATAACAACAAT+AGG 0.412558 5_2:-53855253 None:intergenic
TGCCAAGATGGGTCTGCTGC+TGG 0.415396 5_2:-53861012 None:intergenic
CTTCCACATTCATGGTCTCA+TGG 0.416944 5_2:-53857387 None:intergenic
AATTAAGAACCAATATTAGT+TGG 0.423047 5_2:-53861325 None:intergenic
ATGACAGTGTTGTTTGGAAT+CGG 0.427904 5_2:+53858441 Msa0776290:CDS
ACCCGATTTGATGGATTATG+AGG 0.428181 5_2:+53858481 Msa0776290:CDS
CACTGGCGTGTGAGCTTGCA+AGG 0.436226 5_2:+53857894 Msa0776290:CDS
TTTCTCTAATTTCAGAAGCC+TGG 0.442448 5_2:+53858272 Msa0776290:intron
AGCTAGATATGCACTTGAAA+TGG 0.443839 5_2:+53856241 Msa0776290:CDS
TCAATAATTCTGAAGATGAC+TGG 0.446589 5_2:+53857470 Msa0776290:CDS
GGAAGAAACATTTACCGGTT+GGG 0.451567 5_2:+53857492 Msa0776290:CDS
GTAAATACAATTGTAGCATA+TGG 0.452563 5_2:+53859233 Msa0776290:intron
ATAAAATAATGGAGTAACTT+AGG 0.453723 5_2:-53861252 None:intergenic
TTGCAGAATTGCGGGCATAC+AGG 0.453904 5_2:+53860899 Msa0776290:intron
GAACAAAGTCAAGAAGTCAT+TGG 0.454433 5_2:+53857545 Msa0776290:CDS
ATGTGGGAAAATAGGAAAGA+TGG 0.454557 5_2:+53861164 Msa0776290:three_prime_UTR
AGCCTCATAATCCATCAAAT+CGG 0.455449 5_2:-53858483 None:intergenic
GGACAGATACAGTGAACTTC+AGG 0.455837 5_2:+53859442 Msa0776290:CDS
CTCCAGCAGCAGACCCATCT+TGG 0.459002 5_2:+53861010 Msa0776290:three_prime_UTR
TGTGGGAAAATAGGAAAGAT+GGG 0.461804 5_2:+53861165 Msa0776290:three_prime_UTR
TTGCCCTCAAGGTTAATGAC+TGG 0.463939 5_2:+53857924 Msa0776290:CDS
ATAAATCAAAATACATAGAA+TGG 0.465272 5_2:+53855075 Msa0776290:exon
GACTGGGAAGAAACATTTAC+CGG 0.465497 5_2:+53857487 Msa0776290:CDS
AATCCTTTGAACTGCCAAGA+TGG 0.468867 5_2:-53861024 None:intergenic
CGATCAATCCTCTTTCGGCC+TGG 0.470126 5_2:+53857866 Msa0776290:CDS
GCTGGTGTGTTGAGCTCTGA+TGG 0.477454 5_2:+53856263 Msa0776290:CDS
CGAGGATGAGGATGAGAAGA+TGG 0.485016 5_2:-53855133 None:intergenic
CAAGAAGTCATTGGGGACCT+TGG 0.485464 5_2:+53857554 Msa0776290:CDS
GCCTCATAATCCATCAAATC+GGG 0.487018 5_2:-53858482 None:intergenic
CTCAGATACATCAACCCAAC+CGG 0.488269 5_2:-53857506 None:intergenic
CCTGGTCGCACTATTCTCGC+TGG 0.489201 5_2:+53855295 Msa0776290:CDS
GAGGTGTTGTTACGAGGATG+AGG 0.489248 5_2:-53855145 None:intergenic
AGCATATGGCGCGTAGATGT+TGG 0.492916 5_2:+53859247 Msa0776290:CDS
ATTATTAGGACAGAGACAAA+AGG 0.495750 5_2:+53857832 Msa0776290:intron
GACCCAGTCATTAACCTTGA+GGG 0.496166 5_2:-53857927 None:intergenic
TAATCTTATAACAAATTGCT+TGG 0.498829 5_2:+53854953 Msa0776290:five_prime_UTR
CAATCCTCTTTCGGCCTGGT+GGG 0.501687 5_2:+53857870 Msa0776290:CDS
TATTAGGTGTTGATTCAACT+TGG 0.506397 5_2:+53856722 Msa0776290:intron
AAATTCCTTTCATTGCCACT+AGG 0.509689 5_2:+53858414 Msa0776290:CDS
GTGGCCCACCAGGCCGAAAG+AGG 0.510742 5_2:-53857874 None:intergenic
TGCCCTCAAGGTTAATGACT+GGG 0.511296 5_2:+53857925 Msa0776290:CDS
TCAATCCTCTTTCGGCCTGG+TGG 0.518213 5_2:+53857869 Msa0776290:CDS
GGACATACTCCTCAAACTGT+TGG 0.520775 5_2:+53858984 Msa0776290:CDS
ATCCTTTGAACTGCCAAGAT+GGG 0.522578 5_2:-53861023 None:intergenic
CCAATGATCGCAGCAAGGAC+AGG 0.523343 5_2:-53856781 None:intergenic
AAGGCATGGTGTTGCCCTCA+AGG 0.524064 5_2:+53857913 Msa0776290:CDS
TATAACAAATTGCTTGGCTG+AGG 0.528207 5_2:+53854959 Msa0776290:five_prime_UTR
TGAGTAGTTGGAGATTTACA+TGG 0.529672 5_2:+53856206 Msa0776290:intron
CAGGCCGAAAGAGGATTGAT+CGG 0.532500 5_2:-53857865 None:intergenic
AATACCTTCACTAAATTCCA+AGG 0.532662 5_2:-53857571 None:intergenic
GACCCATCTTGGCAGTTCAA+AGG 0.534840 5_2:+53861021 Msa0776290:three_prime_UTR
GGGAAGAAACATTTACCGGT+TGG 0.536242 5_2:+53857491 Msa0776290:CDS
CAATAATTCTGAAGATGACT+GGG 0.536582 5_2:+53857471 Msa0776290:CDS
TGATGCTAAGGCAATGGTGG+TGG 0.540164 5_2:+53858962 Msa0776290:CDS
AATTCCTTTCATTGCCACTA+GGG 0.544604 5_2:+53858415 Msa0776290:CDS
TTGCAGCGTTTCTTCAAGAA+CGG 0.547457 5_2:-53858934 None:intergenic
AATGACTGGGTCTTCTGTCA+TGG 0.548088 5_2:+53857938 Msa0776290:CDS
AGGCCGAAAGAGGATTGATC+GGG 0.552133 5_2:-53857864 None:intergenic
CCAGGAGCAGAAACAAAAGT+TGG 0.553258 5_2:-53855277 None:intergenic
TGAGACCATGAATGTGGAAG+GGG 0.554110 5_2:+53857390 Msa0776290:CDS
TTCAGATATGTTGATTCTGG+AGG 0.554414 5_2:+53857415 Msa0776290:CDS
TAGAGTTATAAGGACCAAAA+CGG 0.555374 5_2:+53859421 Msa0776290:CDS
GAAAGAGAGGTGTTGTTACG+AGG 0.555547 5_2:-53855151 None:intergenic
ATAGTACTTTCATTCTCACT+TGG 0.558979 5_2:-53858389 None:intergenic
GCTGCAAGCAGTTGATGCTA+AGG 0.559445 5_2:+53858950 Msa0776290:CDS
AGGATGCACAAGAATAAATG+TGG 0.560856 5_2:+53861147 Msa0776290:three_prime_UTR
ACTGACCGTGGTGAGGAAGA+AGG 0.565272 5_2:-53857964 None:intergenic
GCTCTGATGGTCAAGACTTG+TGG 0.566662 5_2:+53856276 Msa0776290:CDS
TCACACGCCAGTGGCCCACC+AGG 0.567392 5_2:-53857884 None:intergenic
GGAGCAGAAACAAAAGTTGG+AGG 0.570280 5_2:-53855274 None:intergenic
TTATTAGGACAGAGACAAAA+GGG 0.571241 5_2:+53857833 Msa0776290:intron
AGATATGCACTTGAAATGGC+TGG 0.572444 5_2:+53856245 Msa0776290:CDS
GATGGTCAAGACTTGTGGAC+TGG 0.574733 5_2:+53856281 Msa0776290:CDS
GCGTGTGAGCTTGCAAGGCA+TGG 0.576777 5_2:+53857899 Msa0776290:CDS
CATGAGACCATGAATGTGGA+AGG 0.579915 5_2:+53857388 Msa0776290:CDS
TGACATGAAAATTGAAAGCA+AGG 0.585172 5_2:+53861117 Msa0776290:three_prime_UTR
TCTTGAATTAAGGACTCCAC+TGG 0.588049 5_2:-53859275 None:intergenic
GGGACCTTGGAATTTAGTGA+AGG 0.593234 5_2:+53857567 Msa0776290:CDS
TAACCCCTAGTGGCAATGAA+AGG 0.595768 5_2:-53858419 None:intergenic
CCAGCGAGAATAGTGCGACC+AGG 0.596339 5_2:-53855295 None:intergenic
ACAGGAGTAAAGAGCAACAT+TGG 0.596602 5_2:+53860917 Msa0776290:three_prime_UTR
GATAAACAAGCGAAATCGAA+AGG 0.596790 5_2:+53856803 Msa0776290:CDS
ATTCCTTTCATTGCCACTAG+GGG 0.605294 5_2:+53858416 Msa0776290:CDS
GGAAAATAGGAAAGATGGGG+AGG 0.607721 5_2:+53861169 Msa0776290:three_prime_UTR
GGATGAGAAGATGGTGAGAG+TGG 0.608294 5_2:-53855124 None:intergenic
TAGTGATACAATTTGAACAC+AGG 0.609169 5_2:+53861063 Msa0776290:three_prime_UTR
ATGAGACCATGAATGTGGAA+GGG 0.617703 5_2:+53857389 Msa0776290:CDS
GAGCAGAAACAAAAGTTGGA+GGG 0.628318 5_2:-53855273 None:intergenic
ACATACTCCTCAAACTGTTG+GGG 0.629092 5_2:+53858986 Msa0776290:CDS
GGGTTGATGTATCTGAGAAG+TGG 0.629338 5_2:+53857512 Msa0776290:CDS
GGCGGCCTTCTTCCTCACCA+CGG 0.632687 5_2:+53857959 Msa0776290:CDS
GGATGCACAAGAATAAATGT+GGG 0.634758 5_2:+53861148 Msa0776290:three_prime_UTR
CTTGCAAGCTCACACGCCAG+TGG 0.635650 5_2:-53857893 None:intergenic
TTTATCCAATGATCGCAGCA+AGG 0.638421 5_2:-53856786 None:intergenic
GTAAAATACTGACCGTGGTG+AGG 0.638720 5_2:-53857971 None:intergenic
AGGATGAAGATAATATTACC+AGG 0.651850 5_2:-53858290 None:intergenic
TAGTTGCGTATGGTTTAGAG+CGG 0.656501 5_2:+53858333 Msa0776290:CDS
AGACCCAGTCATTAACCTTG+AGG 0.659904 5_2:-53857928 None:intergenic
AGCAGTTGATGCTAAGGCAA+TGG 0.660163 5_2:+53858956 Msa0776290:CDS
CTTGGAGATATATTAGATCG+AGG 0.662741 5_2:+53856740 Msa0776290:CDS
GATGCTAAGGCAATGGTGGT+GGG 0.662923 5_2:+53858963 Msa0776290:CDS
GGTCAAGACTTGTGGACTGG+TGG 0.662970 5_2:+53856284 Msa0776290:CDS
AACACTGTCATAACCCCTAG+TGG 0.665651 5_2:-53858429 None:intergenic
AAGTGACTAGAATAAGTCGA+CGG 0.676557 5_2:-53860956 None:intergenic
AAACCATGAGACCATGAATG+TGG 0.677540 5_2:+53857384 Msa0776290:CDS
AAACAAGCGAAATCGAAAGG+TGG 0.681777 5_2:+53856806 Msa0776290:CDS
AGTCCTTAATTCAAGACCAG+AGG 0.683122 5_2:+53859282 Msa0776290:CDS
GACTGGGTCTTCTGTCATGG+CGG 0.692152 5_2:+53857941 Msa0776290:CDS
GTAGATGTTGGAATGTCCAG+TGG 0.693208 5_2:+53859259 Msa0776290:CDS
GAAAATAGGAAAGATGGGGA+GGG 0.694803 5_2:+53861170 Msa0776290:three_prime_UTR
GTGGGAAAATAGGAAAGATG+GGG 0.695193 5_2:+53861166 Msa0776290:three_prime_UTR
AGTTGATGCTAAGGCAATGG+TGG 0.697830 5_2:+53858959 Msa0776290:CDS
TGAACAAAGAAGTGTCTGAG+TGG 0.728833 5_2:+53858357 Msa0776290:CDS
ACAAAGTCAAGAAGTCATTG+GGG 0.742521 5_2:+53857547 Msa0776290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAATTTTTTAAAATTT+TGG + chr5_2:53859906-53859925 Msa0776290:intron 0.0%
!!! TTCAATTAATTTTCAATAAA+TGG + chr5_2:53857338-53857357 Msa0776290:intron 10.0%
!!! TAATTTTTTAAAATTTTGGT+TGG + chr5_2:53859910-53859929 Msa0776290:intron 10.0%
!!! AATTTTTTAAAATTTTGGTT+GGG + chr5_2:53859911-53859930 Msa0776290:intron 10.0%
!!! AAGATAAAATTAAATTGTTT+TGG + chr5_2:53860246-53860265 Msa0776290:intron 10.0%
!! AGTTCATAAAAATAAAATAA+TGG - chr5_2:53861266-53861285 None:intergenic 10.0%
!! ATAAATCAAAATACATAGAA+TGG + chr5_2:53855075-53855094 Msa0776290:exon 15.0%
!! AAATAAGCAAAATTAAGATA+TGG - chr5_2:53855338-53855357 None:intergenic 15.0%
!!! TCTTAATTTTGCTTATTTTT+TGG + chr5_2:53855340-53855359 Msa0776290:intron 15.0%
!! CAAATAATTCATTTCAAAAA+AGG - chr5_2:53856932-53856951 None:intergenic 15.0%
!! CTACTTAATTTAGATAAAAA+TGG - chr5_2:53857271-53857290 None:intergenic 15.0%
!! TCTAAGCTAAAAATATTATA+TGG + chr5_2:53858609-53858628 Msa0776290:intron 15.0%
!! ATAATACTCAAATTGAAATT+TGG - chr5_2:53860875-53860894 None:intergenic 15.0%
!! TAATCTTATAACAAATTGCT+TGG + chr5_2:53854953-53854972 Msa0776290:five_prime_UTR 20.0%
!!! AAAATAACGAGAAAATTTTG+AGG - chr5_2:53855011-53855030 None:intergenic 20.0%
!!! TATTTTCTCAATCTTTTCAT+AGG + chr5_2:53855025-53855044 Msa0776290:five_prime_UTR 20.0%
!! TATTAGTGTATTAAAATCAC+AGG - chr5_2:53856086-53856105 None:intergenic 20.0%
!! GAAACTTCATAATAATACAT+GGG - chr5_2:53857249-53857268 None:intergenic 20.0%
!! TTGAATTAGGAATTTATTCT+TGG - chr5_2:53857639-53857658 None:intergenic 20.0%
!! ATTCCTAATTCAAACTAATT+TGG + chr5_2:53857646-53857665 Msa0776290:intron 20.0%
!!! AATATTTTTAGCTTAGACAA+GGG - chr5_2:53858606-53858625 None:intergenic 20.0%
!!! TAATATTTTTAGCTTAGACA+AGG - chr5_2:53858607-53858626 None:intergenic 20.0%
!! AATAATGAAAAGTTACAGAA+AGG - chr5_2:53858724-53858743 None:intergenic 20.0%
!! TTAAGTCAACAAATTTAACA+TGG + chr5_2:53858742-53858761 Msa0776290:intron 20.0%
!! AACAAATTTAACATGGTATA+GGG + chr5_2:53858749-53858768 Msa0776290:intron 20.0%
!! AACTCAATAATTCAATATTC+AGG + chr5_2:53858905-53858924 Msa0776290:intron 20.0%
!!! TTTTTCTTTAGTATAGATTG+TGG - chr5_2:53859071-53859090 None:intergenic 20.0%
!! GATTTATAATGTAAAGATTG+TGG - chr5_2:53859097-53859116 None:intergenic 20.0%
!!! TTTTCATTGGAAATATACAT+TGG + chr5_2:53859579-53859598 Msa0776290:intron 20.0%
!!! ATAAAATAATGGAGTAACTT+AGG - chr5_2:53861255-53861274 None:intergenic 20.0%
!! AATTAAGAACCAATATTAGT+TGG - chr5_2:53861328-53861347 None:intergenic 20.0%
!! TCAATCTTTTCATAGGAAAT+GGG + chr5_2:53855032-53855051 Msa0776290:five_prime_UTR 25.0%
!!! AACTACTTGATGATGTTTTA+AGG - chr5_2:53855228-53855247 None:intergenic 25.0%
!! TTCAAACCTATTGTTGTTAT+TGG + chr5_2:53855247-53855266 Msa0776290:CDS 25.0%
! TATTAAGTATTATCTCAGCT+TGG + chr5_2:53855832-53855851 Msa0776290:intron 25.0%
! CTAGTATTGTGTTAGAAATA+TGG + chr5_2:53855888-53855907 Msa0776290:intron 25.0%
! TTGTGTTAGAAATATGGAAT+TGG + chr5_2:53855894-53855913 Msa0776290:intron 25.0%
! ACAAGTGATTAAAATTTCTG+TGG + chr5_2:53856048-53856067 Msa0776290:intron 25.0%
! ATAAAAATCAAAACGAGTTC+AGG - chr5_2:53856135-53856154 None:intergenic 25.0%
! TTGTCAAATAGAAGCTATAA+TGG + chr5_2:53856371-53856390 Msa0776290:intron 25.0%
! AGTACTATAAACAGTAAGAA+TGG - chr5_2:53856559-53856578 None:intergenic 25.0%
! TTGAATCAACACCTAATATA+CGG - chr5_2:53856720-53856739 None:intergenic 25.0%
! TTAAGGAAATAAGCTGAAAA+TGG - chr5_2:53857024-53857043 None:intergenic 25.0%
!! GTCTTTAACATTTGGTAATT+AGG - chr5_2:53857171-53857190 None:intergenic 25.0%
! CTATTGTTGTCTTTAACATT+TGG - chr5_2:53857179-53857198 None:intergenic 25.0%
! GGAAACTTCATAATAATACA+TGG - chr5_2:53857250-53857269 None:intergenic 25.0%
!! TTGCCAAATTAGTTTGAATT+AGG - chr5_2:53857652-53857671 None:intergenic 25.0%
! TCACTATCTTGAATTGTATT+TGG + chr5_2:53858068-53858087 Msa0776290:intron 25.0%
! AATCAATTCAAGATACAGAT+GGG - chr5_2:53858208-53858227 None:intergenic 25.0%
!! TGATTCAACAAATTTGAAAC+AGG - chr5_2:53858248-53858267 None:intergenic 25.0%
! TTGTACAGTATGTGATTAAT+AGG + chr5_2:53858536-53858555 Msa0776290:intron 25.0%
! CAACAAATTTAACATGGTAT+AGG + chr5_2:53858748-53858767 Msa0776290:intron 25.0%
! AATAATTCCAAGAATGCTTA+AGG - chr5_2:53859035-53859054 None:intergenic 25.0%
! GTAAATACAATTGTAGCATA+TGG + chr5_2:53859233-53859252 Msa0776290:intron 25.0%
! CAATGAAAAGAACTTTCTTT+CGG - chr5_2:53859568-53859587 None:intergenic 25.0%
! TGAAACATTCCATCTAATAA+AGG + chr5_2:53859626-53859645 Msa0776290:intron 25.0%
! GAAACATTCCATCTAATAAA+GGG + chr5_2:53859627-53859646 Msa0776290:intron 25.0%
!! TGATTGATTTCTGTATATCA+TGG + chr5_2:53859811-53859830 Msa0776290:intron 25.0%
! AAAGATAGTGCAATAACAAA+AGG + chr5_2:53859857-53859876 Msa0776290:intron 25.0%
!! GATGGCTTCTAAAAAATAAA+TGG - chr5_2:53859968-53859987 None:intergenic 25.0%
!!! GTTGTTTCCATAAACTATTT+TGG + chr5_2:53860111-53860130 Msa0776290:intron 25.0%
! AAGTTCTCCAAAATAGTTTA+TGG - chr5_2:53860121-53860140 None:intergenic 25.0%
! GAACTTATAAAAACAGCTAA+TGG - chr5_2:53860178-53860197 None:intergenic 25.0%
!!! GTTGTTTCCATAAACTATTT+TGG + chr5_2:53860111-53860130 Msa0776290:intron 25.0%
! AAGTTCTCCAAAATAGTTTA+TGG - chr5_2:53860121-53860140 None:intergenic 25.0%
! GAACTTATAAAAACAGCTAA+TGG - chr5_2:53860178-53860197 None:intergenic 25.0%
!!! TAAGTTTTGTGATACTGTTT+TGG - chr5_2:53860371-53860390 None:intergenic 25.0%
!!! GTTTTTCCAAACTGTTTTTA+CGG - chr5_2:53860495-53860514 None:intergenic 25.0%
! TTTGGACCAATATTGTTAAA+TGG + chr5_2:53860582-53860601 Msa0776290:intron 25.0%
!!! ATTATGTTTTTGCAGAATTG+CGG + chr5_2:53860890-53860909 Msa0776290:intron 25.0%
! AAGAATAAATGTGGGAAAAT+AGG + chr5_2:53861156-53861175 Msa0776290:three_prime_UTR 25.0%
! ATGTAAACACCAACTAATAT+TGG + chr5_2:53861316-53861335 Msa0776290:three_prime_UTR 25.0%
! CTCAATCTTTTCATAGGAAA+TGG + chr5_2:53855031-53855050 Msa0776290:five_prime_UTR 30.0%
GCAAAATTAAGATATGGAAG+AGG - chr5_2:53855332-53855351 None:intergenic 30.0%
TAGCATAACTTTGACATCAT+AGG - chr5_2:53855486-53855505 None:intergenic 30.0%
TAAAAAAAGTTCTGCAACAC+CGG - chr5_2:53855662-53855681 None:intergenic 30.0%
! TAAAACCTTTTACGCGAATT+AGG + chr5_2:53855680-53855699 Msa0776290:intron 30.0%
AATTAGGATCAAATGGAGAA+TGG + chr5_2:53855696-53855715 Msa0776290:intron 30.0%
!! ATGGCGTAGTAATGTTTTTA+TGG + chr5_2:53855715-53855734 Msa0776290:intron 30.0%
!! CGTAGTAATGTTTTTATGGA+AGG + chr5_2:53855719-53855738 Msa0776290:intron 30.0%
TTTAACCCATGGAATTATCA+AGG - chr5_2:53855760-53855779 None:intergenic 30.0%
!!! TTACTGTTAGCTGTTTTTGT+TGG + chr5_2:53855943-53855962 Msa0776290:intron 30.0%
!!! TTTTTTTCTCTCTGAGTAGT+TGG + chr5_2:53856194-53856213 Msa0776290:intron 30.0%
ATGCTTAGTGTCTTTCAAAA+TGG + chr5_2:53856316-53856335 Msa0776290:intron 30.0%
!!! GGATTTCTGTTAGTTTTAGT+TGG + chr5_2:53856337-53856356 Msa0776290:intron 30.0%
ACTATAAACAGTAAGAATGG+AGG - chr5_2:53856556-53856575 None:intergenic 30.0%
!! TTACTTTTCCTCCGTATATT+AGG + chr5_2:53856706-53856725 Msa0776290:intron 30.0%
!! TATTAGGTGTTGATTCAACT+TGG + chr5_2:53856722-53856741 Msa0776290:intron 30.0%
!! TGTTTCAGGTTTGTAATTTG+TGG + chr5_2:53856834-53856853 Msa0776290:intron 30.0%
ATTAAAGCTGCTATCTCTAA+GGG + chr5_2:53856906-53856925 Msa0776290:intron 30.0%
AGTTTCACAAATGTATACTC+TGG - chr5_2:53856965-53856984 None:intergenic 30.0%
TTAAGATGTTTAGCCAAACA+AGG + chr5_2:53857145-53857164 Msa0776290:intron 30.0%
!! GATTTCAGATATGTTGATTC+TGG + chr5_2:53857412-53857431 Msa0776290:CDS 30.0%
TGATGAATGTAGTGATTTCT+TGG + chr5_2:53857441-53857460 Msa0776290:CDS 30.0%
! TCAATAATTCTGAAGATGAC+TGG + chr5_2:53857470-53857489 Msa0776290:CDS 30.0%
! CAATAATTCTGAAGATGACT+GGG + chr5_2:53857471-53857490 Msa0776290:CDS 30.0%
AACAAAGTCAAGAAGTCATT+GGG + chr5_2:53857546-53857565 Msa0776290:CDS 30.0%
AATACCTTCACTAAATTCCA+AGG - chr5_2:53857574-53857593 None:intergenic 30.0%
GGGTCATATAGACAAAATTT+CGG + chr5_2:53857730-53857749 Msa0776290:intron 30.0%
! GATGAAGTTTTCCGATTATT+AGG + chr5_2:53857818-53857837 Msa0776290:intron 30.0%
TTTGTCTCTGTCCTAATAAT+CGG - chr5_2:53857832-53857851 None:intergenic 30.0%
ATTATTAGGACAGAGACAAA+AGG + chr5_2:53857832-53857851 Msa0776290:intron 30.0%
TTATTAGGACAGAGACAAAA+GGG + chr5_2:53857833-53857852 Msa0776290:intron 30.0%
TCATGTTAAACAAAACCAAC+AGG - chr5_2:53858000-53858019 None:intergenic 30.0%
ATCAATTCAAGATACAGATG+GGG - chr5_2:53858207-53858226 None:intergenic 30.0%
CAATCAATTCAAGATACAGA+TGG - chr5_2:53858209-53858228 None:intergenic 30.0%
AGGATGAAGATAATATTACC+AGG - chr5_2:53858293-53858312 None:intergenic 30.0%
CAGAAAATGAAGAGACAAAA+AGG - chr5_2:53858313-53858332 None:intergenic 30.0%
ATAGTACTTTCATTCTCACT+TGG - chr5_2:53858392-53858411 None:intergenic 30.0%
ACAGTATGTGATTAATAGGA+AGG + chr5_2:53858540-53858559 Msa0776290:intron 30.0%
!! ATTAATAGGAAGGTATTGTG+CGG + chr5_2:53858550-53858569 Msa0776290:intron 30.0%
AATGAAAAGTTACAGAAAGG+TGG - chr5_2:53858721-53858740 None:intergenic 30.0%
GCTACAATTGTATTTACTGT+AGG - chr5_2:53859230-53859249 None:intergenic 30.0%
CTGTAAACTACAATAACTAC+TGG - chr5_2:53859351-53859370 None:intergenic 30.0%
ACGATAAAGCTAGAGTTATA+AGG + chr5_2:53859411-53859430 Msa0776290:CDS 30.0%
TAGAGTTATAAGGACCAAAA+CGG + chr5_2:53859421-53859440 Msa0776290:CDS 30.0%
AGACAAACAAATGATGTAAC+AGG + chr5_2:53859483-53859502 Msa0776290:three_prime_UTR 30.0%
! CGAAAGAAAGTTCTTTTCAT+TGG + chr5_2:53859566-53859585 Msa0776290:intron 30.0%
ATTGCATTACTGTCAAACTA+TGG + chr5_2:53859727-53859746 Msa0776290:intron 30.0%
TTGCATTACTGTCAAACTAT+GGG + chr5_2:53859728-53859747 Msa0776290:intron 30.0%
CATTATTGAATTTCGCTGAT+TGG - chr5_2:53859767-53859786 None:intergenic 30.0%
TATCATGGAATTTCATCGAA+TGG + chr5_2:53859826-53859845 Msa0776290:intron 30.0%
!!! ATTTTGGTTGGGTTTTCAAT+AGG + chr5_2:53859922-53859941 Msa0776290:intron 30.0%
!! AATGGATTAAATGATGTCAC+TGG - chr5_2:53859950-53859969 None:intergenic 30.0%
!! TAAGTTTTGTGATACTGTCT+TGG - chr5_2:53860202-53860221 None:intergenic 30.0%
!! TTCACGATTTTGTTTCAAGA+AGG + chr5_2:53860455-53860474 Msa0776290:intron 30.0%
!!! ACTGTTTTTACGGTTCAATT+TGG - chr5_2:53860485-53860504 None:intergenic 30.0%
ATTGAACCGTAAAAACAGTT+TGG + chr5_2:53860486-53860505 Msa0776290:intron 30.0%
AGGATAAACCATGAATTGTT+CGG - chr5_2:53860517-53860536 None:intergenic 30.0%
!! TTATGTTTTTGCAGAATTGC+GGG + chr5_2:53860891-53860910 Msa0776290:intron 30.0%
TAGTGATACAATTTGAACAC+AGG + chr5_2:53861063-53861082 Msa0776290:three_prime_UTR 30.0%
! TCAATTTTCATGTCATTCAC+AGG - chr5_2:53861112-53861131 None:intergenic 30.0%
TGACATGAAAATTGAAAGCA+AGG + chr5_2:53861117-53861136 Msa0776290:three_prime_UTR 30.0%
ATTGAAAGCAAGGTGAAAAT+AGG + chr5_2:53861127-53861146 Msa0776290:three_prime_UTR 30.0%
TATAACAAATTGCTTGGCTG+AGG + chr5_2:53854959-53854978 Msa0776290:five_prime_UTR 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG - chr5_2:53855167-53855186 None:intergenic 35.0%
TGATACTGTCACAATTTCAG+TGG + chr5_2:53855610-53855629 Msa0776290:intron 35.0%
AAAAAAAGTTCTGCAACACC+GGG - chr5_2:53855661-53855680 None:intergenic 35.0%
TTGATCCTAATTCGCGTAAA+AGG - chr5_2:53855688-53855707 None:intergenic 35.0%
TTACGCGAATTAGGATCAAA+TGG + chr5_2:53855689-53855708 Msa0776290:intron 35.0%
! TTGCTCCTTGATAATTCCAT+GGG + chr5_2:53855752-53855771 Msa0776290:intron 35.0%
! TTTAGTTCAGCTTTAACCCA+TGG - chr5_2:53855771-53855790 None:intergenic 35.0%
TGAGTAGTTGGAGATTTACA+TGG + chr5_2:53856206-53856225 Msa0776290:intron 35.0%
AGCTAGATATGCACTTGAAA+TGG + chr5_2:53856241-53856260 Msa0776290:CDS 35.0%
!! TAAAGAGTGTTGCCAAATAG+CGG + chr5_2:53856451-53856470 Msa0776290:intron 35.0%
AATCAACACCTAATATACGG+AGG - chr5_2:53856717-53856736 None:intergenic 35.0%
CTTGGAGATATATTAGATCG+AGG + chr5_2:53856740-53856759 Msa0776290:CDS 35.0%
GATAAACAAGCGAAATCGAA+AGG + chr5_2:53856803-53856822 Msa0776290:CDS 35.0%
CATTAAAGCTGCTATCTCTA+AGG + chr5_2:53856905-53856924 Msa0776290:intron 35.0%
GCTGAAAATGGACATATCAT+AGG - chr5_2:53857012-53857031 None:intergenic 35.0%
CTTATTTCCTTAAACTCTCC+AGG + chr5_2:53857031-53857050 Msa0776290:intron 35.0%
!! TTTGGTAATTAGGCCTTGTT+TGG - chr5_2:53857161-53857180 None:intergenic 35.0%
CAACATAATGCGTAATGAGT+AGG - chr5_2:53857220-53857239 None:intergenic 35.0%
! TAAATGGTTCTGCTTTGTCT+AGG + chr5_2:53857354-53857373 Msa0776290:intron 35.0%
TTCTGCTTTGTCTAGGTAAA+TGG + chr5_2:53857361-53857380 Msa0776290:intron 35.0%
!! TTCAGATATGTTGATTCTGG+AGG + chr5_2:53857415-53857434 Msa0776290:CDS 35.0%
GAACAAAGTCAAGAAGTCAT+TGG + chr5_2:53857545-53857564 Msa0776290:CDS 35.0%
ACAAAGTCAAGAAGTCATTG+GGG + chr5_2:53857547-53857566 Msa0776290:CDS 35.0%
!! TTATTCCAGCACGTTGATTT+GGG - chr5_2:53857704-53857723 None:intergenic 35.0%
! TCAGTATTTTACTGTCCTGT+TGG + chr5_2:53857982-53858001 Msa0776290:intron 35.0%
TCCTTCACTAGAATTAACTG+CGG + chr5_2:53858133-53858152 Msa0776290:intron 35.0%
!! TGTTTTGAGCTAAGGGTAAA+AGG - chr5_2:53858169-53858188 None:intergenic 35.0%
!! AGGCTTCTGAAATTAGAGAA+AGG - chr5_2:53858273-53858292 None:intergenic 35.0%
TTTCTCTAATTTCAGAAGCC+TGG + chr5_2:53858272-53858291 Msa0776290:intron 35.0%
! TCATTTTCTGTAGTTGCGTA+TGG + chr5_2:53858323-53858342 Msa0776290:CDS 35.0%
TAGTGGCAATGAAAGGAATT+TGG - chr5_2:53858415-53858434 None:intergenic 35.0%
AAATTCCTTTCATTGCCACT+AGG + chr5_2:53858414-53858433 Msa0776290:CDS 35.0%
AATTCCTTTCATTGCCACTA+GGG + chr5_2:53858415-53858434 Msa0776290:CDS 35.0%
!! ATGACAGTGTTGTTTGGAAT+CGG + chr5_2:53858441-53858460 Msa0776290:CDS 35.0%
AGCCTCATAATCCATCAAAT+CGG - chr5_2:53858486-53858505 None:intergenic 35.0%
CAATACAAGTCATACTGAGA+CGG - chr5_2:53858874-53858893 None:intergenic 35.0%
GACATTTCCTTAAGCATTCT+TGG + chr5_2:53859025-53859044 Msa0776290:intron 35.0%
!!! AAATGCCAGATGCTTTTTCT+AGG + chr5_2:53859148-53859167 Msa0776290:intron 35.0%
!! TTACCTCTGGTCTTGAATTA+AGG - chr5_2:53859288-53859307 None:intergenic 35.0%
!! CGTCTATAATTTCTAGAACC+TGG - chr5_2:53859394-53859413 None:intergenic 35.0%
!! TAGAAGCACCCTTTATTAGA+TGG - chr5_2:53859638-53859657 None:intergenic 35.0%
TTAAAGGCAGAATGGCATAA+AGG + chr5_2:53859702-53859721 Msa0776290:intron 35.0%
TTGAAACAGGGCTTAAATGA+TGG - chr5_2:53859986-53860005 None:intergenic 35.0%
!! TTTCTGCAGTTTTTCAACGA+GGG - chr5_2:53860013-53860032 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr5_2:53860406-53860425 Msa0776290:intron 35.0%
TTGTACAAGTTATCCCACTA+GGG - chr5_2:53860432-53860451 None:intergenic 35.0%
TGGAAAAACCGAACAATTCA+TGG + chr5_2:53860506-53860525 Msa0776290:intron 35.0%
TGGTTTATCCTGAACTAAAC+TGG + chr5_2:53860526-53860545 Msa0776290:intron 35.0%
! CCTTAAAACCAGTTTAGTTC+AGG - chr5_2:53860537-53860556 None:intergenic 35.0%
!!! CCTGAACTAAACTGGTTTTA+AGG + chr5_2:53860534-53860553 Msa0776290:intron 35.0%
GGACCAATATTGTTAAATGG+AGG + chr5_2:53860585-53860604 Msa0776290:intron 35.0%
TGGCCTCCATTTAACAATAT+TGG - chr5_2:53860591-53860610 None:intergenic 35.0%
ATATTGTTAAATGGAGGCCA+TGG + chr5_2:53860591-53860610 Msa0776290:intron 35.0%
TCTCCATAGGAAATTTGTGA+AGG + chr5_2:53860629-53860648 Msa0776290:intron 35.0%
CTCCATAGGAAATTTGTGAA+GGG + chr5_2:53860630-53860649 Msa0776290:intron 35.0%
ATCCCTTCACAAATTTCCTA+TGG - chr5_2:53860635-53860654 None:intergenic 35.0%
!!! CAACACTGTTTTGACTAAAC+AGG + chr5_2:53860739-53860758 Msa0776290:intron 35.0%
! GGTTAGTCAAGAAAACAGTT+CGG - chr5_2:53860802-53860821 None:intergenic 35.0%
AGCAACATTGGCCAATTTAT+TGG + chr5_2:53860929-53860948 Msa0776290:three_prime_UTR 35.0%
AAGTGACTAGAATAAGTCGA+CGG - chr5_2:53860959-53860978 None:intergenic 35.0%
AGGATGCACAAGAATAAATG+TGG + chr5_2:53861147-53861166 Msa0776290:three_prime_UTR 35.0%
GGATGCACAAGAATAAATGT+GGG + chr5_2:53861148-53861167 Msa0776290:three_prime_UTR 35.0%
ATGTGGGAAAATAGGAAAGA+TGG + chr5_2:53861164-53861183 Msa0776290:three_prime_UTR 35.0%
TGTGGGAAAATAGGAAAGAT+GGG + chr5_2:53861165-53861184 Msa0776290:three_prime_UTR 35.0%
TCATTTGCTTGCATCAAATC+TGG + chr5_2:53861286-53861305 Msa0776290:three_prime_UTR 35.0%
GGGTCACCAATAACAACAAT+AGG - chr5_2:53855256-53855275 None:intergenic 40.0%
GAGCAGAAACAAAAGTTGGA+GGG - chr5_2:53855276-53855295 None:intergenic 40.0%
! CTTGCTCCTTGATAATTCCA+TGG + chr5_2:53855751-53855770 Msa0776290:intron 40.0%
AGATATGCACTTGAAATGGC+TGG + chr5_2:53856245-53856264 Msa0776290:CDS 40.0%
GATATAGCACAGTAGTGTTG+CGG + chr5_2:53856475-53856494 Msa0776290:intron 40.0%
ACAGTAAGAATGGAGGCTAA+TGG - chr5_2:53856549-53856568 None:intergenic 40.0%
TTTATCCAATGATCGCAGCA+AGG - chr5_2:53856789-53856808 None:intergenic 40.0%
AAACAAGCGAAATCGAAAGG+TGG + chr5_2:53856806-53856825 Msa0776290:CDS 40.0%
AAGCTATCCTGGAGAGTTTA+AGG - chr5_2:53857041-53857060 None:intergenic 40.0%
TAAACTCTCCAGGATAGCTT+AGG + chr5_2:53857041-53857060 Msa0776290:intron 40.0%
TTGTGTTTCCTAAGCTATCC+TGG - chr5_2:53857052-53857071 None:intergenic 40.0%
ACAACAATAGTACACCGCTA+AGG + chr5_2:53857189-53857208 Msa0776290:intron 40.0%
ATGAGTAGGCATATCCTTAG+CGG - chr5_2:53857206-53857225 None:intergenic 40.0%
AAACCATGAGACCATGAATG+TGG + chr5_2:53857384-53857403 Msa0776290:CDS 40.0%
ATGAGACCATGAATGTGGAA+GGG + chr5_2:53857389-53857408 Msa0776290:CDS 40.0%
GACTGGGAAGAAACATTTAC+CGG + chr5_2:53857487-53857506 Msa0776290:CDS 40.0%
! GGAAGAAACATTTACCGGTT+GGG + chr5_2:53857492-53857511 Msa0776290:CDS 40.0%
!! AGCACGTTGATTTGGGAATT+AGG - chr5_2:53857697-53857716 None:intergenic 40.0%
TAATTCCCAAATCAACGTGC+TGG + chr5_2:53857696-53857715 Msa0776290:intron 40.0%
! CTTATTCCAGCACGTTGATT+TGG - chr5_2:53857705-53857724 None:intergenic 40.0%
CAACGTGCTGGAATAAGTTA+CGG + chr5_2:53857708-53857727 Msa0776290:intron 40.0%
AACGTGCTGGAATAAGTTAC+GGG + chr5_2:53857709-53857728 Msa0776290:intron 40.0%
ACCGCAGTTAATTCTAGTGA+AGG - chr5_2:53858137-53858156 None:intergenic 40.0%
!! GCTCAACTGTTTTGAGCTAA+GGG - chr5_2:53858176-53858195 None:intergenic 40.0%
!! AGCTCAACTGTTTTGAGCTA+AGG - chr5_2:53858177-53858196 None:intergenic 40.0%
TAGTTGCGTATGGTTTAGAG+CGG + chr5_2:53858333-53858352 Msa0776290:CDS 40.0%
!! TGAACAAAGAAGTGTCTGAG+TGG + chr5_2:53858357-53858376 Msa0776290:CDS 40.0%
ATTCCTTTCATTGCCACTAG+GGG + chr5_2:53858416-53858435 Msa0776290:CDS 40.0%
!! ACCCGATTTGATGGATTATG+AGG + chr5_2:53858481-53858500 Msa0776290:CDS 40.0%
GCCTCATAATCCATCAAATC+GGG - chr5_2:53858485-53858504 None:intergenic 40.0%
!! GATGGATTATGAGGCTAAAC+AGG + chr5_2:53858490-53858509 Msa0776290:CDS 40.0%
! TTTAGCTTAGACAAGGGAGA+GGG - chr5_2:53858600-53858619 None:intergenic 40.0%
!!! TTTTAGCTTAGACAAGGGAG+AGG - chr5_2:53858601-53858620 None:intergenic 40.0%
!!! AGTCACGAAGCTAGTTTTCA+GGG - chr5_2:53858698-53858717 None:intergenic 40.0%
GACATACTCCTCAAACTGTT+GGG + chr5_2:53858985-53859004 Msa0776290:CDS 40.0%
ACATACTCCTCAAACTGTTG+GGG + chr5_2:53858986-53859005 Msa0776290:CDS 40.0%
CAATTTACCCCAACAGTTTG+AGG - chr5_2:53858996-53859015 None:intergenic 40.0%
CTCAAACTGTTGGGGTAAAT+TGG + chr5_2:53858994-53859013 Msa0776290:CDS 40.0%
!! ACTGACCTAGAAAAAGCATC+TGG - chr5_2:53859156-53859175 None:intergenic 40.0%
CTAGGTCAGTTAGTGCTTTA+TGG + chr5_2:53859166-53859185 Msa0776290:intron 40.0%
GTCAGTTAGTGCTTTATGGA+TGG + chr5_2:53859170-53859189 Msa0776290:intron 40.0%
TCTTGAATTAAGGACTCCAC+TGG - chr5_2:53859278-53859297 None:intergenic 40.0%
AGTCCTTAATTCAAGACCAG+AGG + chr5_2:53859282-53859301 Msa0776290:CDS 40.0%
CAAGACCAGAGGTAAATCAA+AGG + chr5_2:53859293-53859312 Msa0776290:intron 40.0%
GTGTTGTGTTCTTATTCTCC+AGG + chr5_2:53859373-53859392 Msa0776290:intron 40.0%
! TTCACTGTATCTGTCCGTTT+TGG - chr5_2:53859438-53859457 None:intergenic 40.0%
ATCCTTTGACCTGTTATAGC+CGG + chr5_2:53859679-53859698 Msa0776290:intron 40.0%
TATGCCATTCTGCCTTTAAC+CGG - chr5_2:53859701-53859720 None:intergenic 40.0%
AACGAGGGCTTATTGAAACA+GGG - chr5_2:53859998-53860017 None:intergenic 40.0%
!! CTTTCTGCAGTTTTTCAACG+AGG - chr5_2:53860014-53860033 None:intergenic 40.0%
GTTGTACAAGTTATCCCACT+AGG - chr5_2:53860433-53860452 None:intergenic 40.0%
GGTTATTTGACAGTCTCCAT+AGG + chr5_2:53860616-53860635 Msa0776290:intron 40.0%
GCTGCAATGGTGTGTTTATT+GGG + chr5_2:53860677-53860696 Msa0776290:intron 40.0%
CTGCAATGGTGTGTTTATTG+GGG + chr5_2:53860678-53860697 Msa0776290:intron 40.0%
! GAAAACAGTTCGGTTCGTAA+AGG - chr5_2:53860792-53860811 None:intergenic 40.0%
ACAGGAGTAAAGAGCAACAT+TGG + chr5_2:53860917-53860936 Msa0776290:three_prime_UTR 40.0%
TCGACGGCTATCCAATAAAT+TGG - chr5_2:53860943-53860962 None:intergenic 40.0%
ATCCTTTGAACTGCCAAGAT+GGG - chr5_2:53861026-53861045 None:intergenic 40.0%
AATCCTTTGAACTGCCAAGA+TGG - chr5_2:53861027-53861046 None:intergenic 40.0%
GTGGGAAAATAGGAAAGATG+GGG + chr5_2:53861166-53861185 Msa0776290:three_prime_UTR 40.0%
GAAAATAGGAAAGATGGGGA+GGG + chr5_2:53861170-53861189 Msa0776290:three_prime_UTR 40.0%
!! GAAAGAGAGGTGTTGTTACG+AGG - chr5_2:53855154-53855173 None:intergenic 45.0%
GGAGCAGAAACAAAAGTTGG+AGG - chr5_2:53855277-53855296 None:intergenic 45.0%
CCAGGAGCAGAAACAAAAGT+TGG - chr5_2:53855280-53855299 None:intergenic 45.0%
!!! CCAACTTTTGTTTCTGCTCC+TGG + chr5_2:53855277-53855296 Msa0776290:CDS 45.0%
AGCAACTATGCGCAATAGCA+AGG - chr5_2:53855455-53855474 None:intergenic 45.0%
ACCTTGATATTGTGCACACC+CGG + chr5_2:53855640-53855659 Msa0776290:intron 45.0%
TGTGCTATATCGCCGCTATT+TGG - chr5_2:53856466-53856485 None:intergenic 45.0%
CTTCCACATTCATGGTCTCA+TGG - chr5_2:53857390-53857409 None:intergenic 45.0%
CATGAGACCATGAATGTGGA+AGG + chr5_2:53857388-53857407 Msa0776290:CDS 45.0%
TGAGACCATGAATGTGGAAG+GGG + chr5_2:53857390-53857409 Msa0776290:CDS 45.0%
GAAATCCCCTTCCACATTCA+TGG - chr5_2:53857398-53857417 None:intergenic 45.0%
GGGAAGAAACATTTACCGGT+TGG + chr5_2:53857491-53857510 Msa0776290:CDS 45.0%
CTCAGATACATCAACCCAAC+CGG - chr5_2:53857509-53857528 None:intergenic 45.0%
!! GGGTTGATGTATCTGAGAAG+TGG + chr5_2:53857512-53857531 Msa0776290:CDS 45.0%
GGGACCTTGGAATTTAGTGA+AGG + chr5_2:53857567-53857586 Msa0776290:CDS 45.0%
ACGTGCTGGAATAAGTTACG+GGG + chr5_2:53857710-53857729 Msa0776290:intron 45.0%
TTGCCCGATCAATCCTCTTT+CGG + chr5_2:53857861-53857880 Msa0776290:CDS 45.0%
TTGCCCTCAAGGTTAATGAC+TGG + chr5_2:53857924-53857943 Msa0776290:CDS 45.0%
TGCCCTCAAGGTTAATGACT+GGG + chr5_2:53857925-53857944 Msa0776290:CDS 45.0%
GACCCAGTCATTAACCTTGA+GGG - chr5_2:53857930-53857949 None:intergenic 45.0%
AGACCCAGTCATTAACCTTG+AGG - chr5_2:53857931-53857950 None:intergenic 45.0%
AATGACTGGGTCTTCTGTCA+TGG + chr5_2:53857938-53857957 Msa0776290:CDS 45.0%
GTAAAATACTGACCGTGGTG+AGG - chr5_2:53857974-53857993 None:intergenic 45.0%
GGACAGTAAAATACTGACCG+TGG - chr5_2:53857979-53857998 None:intergenic 45.0%
TAACCCCTAGTGGCAATGAA+AGG - chr5_2:53858422-53858441 None:intergenic 45.0%
AACACTGTCATAACCCCTAG+TGG - chr5_2:53858432-53858451 None:intergenic 45.0%
! GGGGTTATGACAGTGTTGTT+TGG + chr5_2:53858435-53858454 Msa0776290:CDS 45.0%
! AAGAGACTCACCCGATTTGA+TGG + chr5_2:53858472-53858491 Msa0776290:CDS 45.0%
!!! CGAAGCTAGTTTTCAGGGAA+AGG - chr5_2:53858693-53858712 None:intergenic 45.0%
!!! GAGTCACGAAGCTAGTTTTC+AGG - chr5_2:53858699-53858718 None:intergenic 45.0%
! AGCAGTTGATGCTAAGGCAA+TGG + chr5_2:53858956-53858975 Msa0776290:CDS 45.0%
! AGTTGATGCTAAGGCAATGG+TGG + chr5_2:53858959-53858978 Msa0776290:CDS 45.0%
GGACATACTCCTCAAACTGT+TGG + chr5_2:53858984-53859003 Msa0776290:CDS 45.0%
GTAGATGTTGGAATGTCCAG+TGG + chr5_2:53859259-53859278 Msa0776290:CDS 45.0%
GGACAGATACAGTGAACTTC+AGG + chr5_2:53859442-53859461 Msa0776290:CDS 45.0%
AACCGGCTATAACAGGTCAA+AGG - chr5_2:53859684-53859703 None:intergenic 45.0%
GACCTGTTATAGCCGGTTAA+AGG + chr5_2:53859686-53859705 Msa0776290:intron 45.0%
TGCCTTTAACCGGCTATAAC+AGG - chr5_2:53859691-53859710 None:intergenic 45.0%
ATAGCCGGTTAAAGGCAGAA+TGG + chr5_2:53859694-53859713 Msa0776290:intron 45.0%
CAACGAGGGCTTATTGAAAC+AGG - chr5_2:53859999-53860018 None:intergenic 45.0%
!!! GGTTTTAAGGTTCAGTGCAG+CGG + chr5_2:53860547-53860566 Msa0776290:intron 45.0%
!!! GTTTTAAGGTTCAGTGCAGC+GGG + chr5_2:53860548-53860567 Msa0776290:intron 45.0%
!!! CAGCGGGTTATGTGCTTTTT+TGG + chr5_2:53860564-53860583 Msa0776290:intron 45.0%
TTGTTAAATGGAGGCCATGG+CGG + chr5_2:53860594-53860613 Msa0776290:intron 45.0%
GGCTGCAATGGTGTGTTTAT+TGG + chr5_2:53860676-53860695 Msa0776290:intron 45.0%
GTGTTGTGAGTTGTCGATGA+CGG - chr5_2:53860725-53860744 None:intergenic 45.0%
AGACACAAACCAAGCCTATG+GGG - chr5_2:53860832-53860851 None:intergenic 45.0%
CAGACACAAACCAAGCCTAT+GGG - chr5_2:53860833-53860852 None:intergenic 45.0%
ACAGACACAAACCAAGCCTA+TGG - chr5_2:53860834-53860853 None:intergenic 45.0%
! TGGTTTGTGTCTGTAGTACG+TGG + chr5_2:53860840-53860859 Msa0776290:intron 45.0%
GGAAAATAGGAAAGATGGGG+AGG + chr5_2:53861169-53861188 Msa0776290:three_prime_UTR 45.0%
! TGCTTGGCTGAGGAGCTTTT+TGG + chr5_2:53854969-53854988 Msa0776290:five_prime_UTR 50.0%
! GCTTGGCTGAGGAGCTTTTT+GGG + chr5_2:53854970-53854989 Msa0776290:five_prime_UTR 50.0%
GGATGAGAAGATGGTGAGAG+TGG - chr5_2:53855127-53855146 None:intergenic 50.0%
CGAGGATGAGGATGAGAAGA+TGG - chr5_2:53855136-53855155 None:intergenic 50.0%
!! GAGGTGTTGTTACGAGGATG+AGG - chr5_2:53855148-53855167 None:intergenic 50.0%
ACCGGGTGTGCACAATATCA+AGG - chr5_2:53855644-53855663 None:intergenic 50.0%
GCTCTGATGGTCAAGACTTG+TGG + chr5_2:53856276-53856295 Msa0776290:CDS 50.0%
GATGGTCAAGACTTGTGGAC+TGG + chr5_2:53856281-53856300 Msa0776290:CDS 50.0%
TGCAGTCTGCGATTGAACAC+TGG + chr5_2:53856521-53856540 Msa0776290:intron 50.0%
GCAGTCTGCGATTGAACACT+GGG + chr5_2:53856522-53856541 Msa0776290:intron 50.0%
CAGTCTGCGATTGAACACTG+GGG + chr5_2:53856523-53856542 Msa0776290:intron 50.0%
GAAAGGTGGAGCTGTGTTTC+AGG + chr5_2:53856820-53856839 Msa0776290:CDS 50.0%
CAAGAAGTCATTGGGGACCT+TGG + chr5_2:53857554-53857573 Msa0776290:CDS 50.0%
AGGCCGAAAGAGGATTGATC+GGG - chr5_2:53857867-53857886 None:intergenic 50.0%
CAGGCCGAAAGAGGATTGAT+CGG - chr5_2:53857868-53857887 None:intergenic 50.0%
! GCTGCAAGCAGTTGATGCTA+AGG + chr5_2:53858950-53858969 Msa0776290:CDS 50.0%
TGATGCTAAGGCAATGGTGG+TGG + chr5_2:53858962-53858981 Msa0776290:CDS 50.0%
GATGCTAAGGCAATGGTGGT+GGG + chr5_2:53858963-53858982 Msa0776290:CDS 50.0%
AGCATATGGCGCGTAGATGT+TGG + chr5_2:53859247-53859266 Msa0776290:CDS 50.0%
! GCAGGCCTTTGATTTACCTC+TGG - chr5_2:53859301-53859320 None:intergenic 50.0%
GAACATGTGCAGACTCATGC+AGG - chr5_2:53859319-53859338 None:intergenic 50.0%
CAATCCAAACAGGCCCTAGT+GGG + chr5_2:53860416-53860435 Msa0776290:intron 50.0%
TTATCCCACTAGGGCCTGTT+TGG - chr5_2:53860423-53860442 None:intergenic 50.0%
TGTTAAATGGAGGCCATGGC+GGG + chr5_2:53860595-53860614 Msa0776290:intron 50.0%
GACTGTCAAATAACCCGCCA+TGG - chr5_2:53860611-53860630 None:intergenic 50.0%
CACACCATTGCAGCCTATGA+TGG - chr5_2:53860671-53860690 None:intergenic 50.0%
!! CGATGACGGATGGTGGAATA+TGG - chr5_2:53860711-53860730 None:intergenic 50.0%
!! TGTGAGTTGTCGATGACGGA+TGG - chr5_2:53860721-53860740 None:intergenic 50.0%
GACACAAACCAAGCCTATGG+GGG - chr5_2:53860831-53860850 None:intergenic 50.0%
TTGCAGAATTGCGGGCATAC+AGG + chr5_2:53860899-53860918 Msa0776290:intron 50.0%
GACCCATCTTGGCAGTTCAA+AGG + chr5_2:53861021-53861040 Msa0776290:three_prime_UTR 50.0%
! GCTGGTGTGTTGAGCTCTGA+TGG + chr5_2:53856263-53856282 Msa0776290:CDS 55.0%
!! GGTCAAGACTTGTGGACTGG+TGG + chr5_2:53856284-53856303 Msa0776290:CDS 55.0%
CCAATGATCGCAGCAAGGAC+AGG - chr5_2:53856784-53856803 None:intergenic 55.0%
CCTGTCCTTGCTGCGATCAT+TGG + chr5_2:53856781-53856800 Msa0776290:CDS 55.0%
CGATCAATCCTCTTTCGGCC+TGG + chr5_2:53857866-53857885 Msa0776290:CDS 55.0%
TCAATCCTCTTTCGGCCTGG+TGG + chr5_2:53857869-53857888 Msa0776290:CDS 55.0%
CAATCCTCTTTCGGCCTGGT+GGG + chr5_2:53857870-53857889 Msa0776290:CDS 55.0%
!! AAGGCATGGTGTTGCCCTCA+AGG + chr5_2:53857913-53857932 Msa0776290:CDS 55.0%
GACTGGGTCTTCTGTCATGG+CGG + chr5_2:53857941-53857960 Msa0776290:CDS 55.0%
ACTGACCGTGGTGAGGAAGA+AGG - chr5_2:53857967-53857986 None:intergenic 55.0%
TGTCAGTGCAGTGTCGTGTC+TGG - chr5_2:53858664-53858683 None:intergenic 55.0%
CCACTAGGGCCTGTTTGGAT+TGG - chr5_2:53860418-53860437 None:intergenic 55.0%
CCAATCCAAACAGGCCCTAG+TGG + chr5_2:53860415-53860434 Msa0776290:intron 55.0%
TTGTGAAGGGATGCCTGCCA+TGG + chr5_2:53860643-53860662 Msa0776290:intron 55.0%
TGCAGCCTATGATGGCACCA+TGG - chr5_2:53860663-53860682 None:intergenic 55.0%
! GGTGCCATCATAGGCTGCAA+TGG + chr5_2:53860664-53860683 Msa0776290:intron 55.0%
!! GAGTTGTCGATGACGGATGG+TGG - chr5_2:53860718-53860737 None:intergenic 55.0%
ACTAACCGAGATGCCCCCAT+AGG + chr5_2:53860815-53860834 Msa0776290:intron 55.0%
CCAGCGAGAATAGTGCGACC+AGG - chr5_2:53855298-53855317 None:intergenic 60.0%
CCTGGTCGCACTATTCTCGC+TGG + chr5_2:53855295-53855314 Msa0776290:CDS 60.0%
CTTGCAAGCTCACACGCCAG+TGG - chr5_2:53857896-53857915 None:intergenic 60.0%
CACTGGCGTGTGAGCTTGCA+AGG + chr5_2:53857894-53857913 Msa0776290:CDS 60.0%
GCGTGTGAGCTTGCAAGGCA+TGG + chr5_2:53857899-53857918 Msa0776290:CDS 60.0%
!! GCCTGCCATGGTGCCATCAT+AGG + chr5_2:53860655-53860674 Msa0776290:intron 60.0%
GCCTATGATGGCACCATGGC+AGG - chr5_2:53860659-53860678 None:intergenic 60.0%
!! CCAAGCCTATGGGGGCATCT+CGG - chr5_2:53860823-53860842 None:intergenic 60.0%
CTCCAGCAGCAGACCCATCT+TGG + chr5_2:53861010-53861029 Msa0776290:three_prime_UTR 60.0%
TGCCAAGATGGGTCTGCTGC+TGG - chr5_2:53861015-53861034 None:intergenic 60.0%
GGCGGCCTTCTTCCTCACCA+CGG + chr5_2:53857959-53857978 Msa0776290:CDS 65.0%
CCGAGATGCCCCCATAGGCT+TGG + chr5_2:53860820-53860839 Msa0776290:intron 65.0%
GTGGCCCACCAGGCCGAAAG+AGG - chr5_2:53857877-53857896 None:intergenic 70.0%
! CTTTCGGCCTGGTGGGCCAC+TGG + chr5_2:53857877-53857896 Msa0776290:CDS 70.0%
TCACACGCCAGTGGCCCACC+AGG - chr5_2:53857887-53857906 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 53854950 53861377 53854950 ID=Msa0776290;Name=Msa0776290
chr5_2 mRNA 53854950 53861377 53854950 ID=Msa0776290-mRNA-1;Parent=Msa0776290;Name=Msa0776290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|0.88|0.8|1|0.88|0.8|10|496|420
chr5_2 exon 53854950 53855316 53854950 ID=Msa0776290-mRNA-1:exon:16099;Parent=Msa0776290-mRNA-1
chr5_2 exon 53856213 53856313 53856213 ID=Msa0776290-mRNA-1:exon:16100;Parent=Msa0776290-mRNA-1
chr5_2 exon 53856728 53856841 53856728 ID=Msa0776290-mRNA-1:exon:16101;Parent=Msa0776290-mRNA-1
chr5_2 exon 53857376 53857588 53857376 ID=Msa0776290-mRNA-1:exon:16102;Parent=Msa0776290-mRNA-1
chr5_2 exon 53857840 53857980 53857840 ID=Msa0776290-mRNA-1:exon:16103;Parent=Msa0776290-mRNA-1
chr5_2 exon 53858287 53858511 53858287 ID=Msa0776290-mRNA-1:exon:16104;Parent=Msa0776290-mRNA-1
chr5_2 exon 53858927 53859015 53858927 ID=Msa0776290-mRNA-1:exon:16105;Parent=Msa0776290-mRNA-1
chr5_2 exon 53859234 53859303 53859234 ID=Msa0776290-mRNA-1:exon:16106;Parent=Msa0776290-mRNA-1
chr5_2 exon 53859395 53859504 53859395 ID=Msa0776290-mRNA-1:exon:16107;Parent=Msa0776290-mRNA-1
chr5_2 exon 53860905 53861377 53860905 ID=Msa0776290-mRNA-1:exon:16108;Parent=Msa0776290-mRNA-1
chr5_2 five_prime_UTR 53854950 53855093 53854950 ID=Msa0776290-mRNA-1:five_prime_utr;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53855094 53855316 53855094 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53856213 53856313 53856213 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53856728 53856841 53856728 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53857376 53857588 53857376 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53857840 53857980 53857840 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53858287 53858511 53858287 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53858927 53859015 53858927 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53859234 53859303 53859234 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 CDS 53859395 53859481 53859395 ID=Msa0776290-mRNA-1:cds;Parent=Msa0776290-mRNA-1
chr5_2 three_prime_UTR 53859482 53859504 53859482 ID=Msa0776290-mRNA-1:three_prime_utr;Parent=Msa0776290-mRNA-1
chr5_2 three_prime_UTR 53860905 53861377 53860905 ID=Msa0776290-mRNA-1:three_prime_utr;Parent=Msa0776290-mRNA-1
Gene Sequence

>Msa0776290

ATGGCATCTCTATGTATGAACTCAACAGTACCACTCTCACCATCTTCTCATCCTCATCCTCGTAACAACACCTCTCTTTCTTCTTCTTCTTCTTTGCTTGTTGATAATAACATCAACAATAATCACAATAGCCTTAAAACATCATCAAGTAGTTTCAAACCTATTGTTGTTATTGGTGACCCTCCAACTTTTGTTTCTGCTCCTGGTCGCACTATTCTCGCTGTTGGAGATTTACATGGAGATCTTAAGCAAGCTAGATATGCACTTGAAATGGCTGGTGTGTTGAGCTCTGATGGTCAAGACTTGTGGACTGGTGGCGAAAATGTGTTGATTCAACTTGGAGATATATTAGATCGAGGTGAAGATGAAATTGCTATCCTGTCCTTGCTGCGATCATTGGATAAACAAGCGAAATCGAAAGGTGGAGCTGTGTTTCAGGTAAATGGAAACCATGAGACCATGAATGTGGAAGGGGATTTCAGATATGTTGATTCTGGAGGATTTGATGAATGTAGTGATTTCTTGGAATATATCAATAATTCTGAAGATGACTGGGAAGAAACATTTACCGGTTGGGTTGATGTATCTGAGAAGTGGAAAGAAGATCGAACAAAGTCAAGAAGTCATTGGGGACCTTGGAATTTAGTGAAGGACAGAGACAAAAGGGAGTCATTGCCCGATCAATCCTCTTTCGGCCTGGTGGGCCACTGGCGTGTGAGCTTGCAAGGCATGGTGTTGCCCTCAAGGTTAATGACTGGGTCTTCTGTCATGGCGGCCTTCTTCCTCACCACGAAGCCTGGTAATATTATCTTCATCCTTTTTGTCTCTTCATTTTCTGTAGTTGCGTATGGTTTAGAGCGGATGAACAAAGAAGTGTCTGAGTGGATGAGAGATCCAAGTGAGAATGAAAGTACTATCCAAATTCCTTTCATTGCCACTAGGGGTTATGACAGTGTTGTTTGGAATCGGTTATACTCAAGAGACTCACCCGATTTGATGGATTATGAGGCTAAACAGGTATGTTCCGTTCTTGAAGAAACGCTGCAAGCAGTTGATGCTAAGGCAATGGTGGTGGGACATACTCCTCAAACTGTTGGGGTAAATTGTAAATACAATTGTAGCATATGGCGCGTAGATGTTGGAATGTCCAGTGGAGTCCTTAATTCAAGACCAGAGGTTCTAGAAATTATAGACGATAAAGCTAGAGTTATAAGGACCAAAACGGACAGATACAGTGAACTTCAGGCTGCTGCATATACATAA

Protein sequence

>Msa0776290

MASLCMNSTVPLSPSSHPHPRNNTSLSSSSSLLVDNNINNNHNSLKTSSSSFKPIVVIGDPPTFVSAPGRTILAVGDLHGDLKQARYALEMAGVLSSDGQDLWTGGENVLIQLGDILDRGEDEIAILSLLRSLDKQAKSKGGAVFQVNGNHETMNVEGDFRYVDSGGFDECSDFLEYINNSEDDWEETFTGWVDVSEKWKEDRTKSRSHWGPWNLVKDRDKRESLPDQSSFGLVGHWRVSLQGMVLPSRLMTGSSVMAAFFLTTKPGNIIFILFVSSFSVVAYGLERMNKEVSEWMRDPSENESTIQIPFIATRGYDSVVWNRLYSRDSPDLMDYEAKQVCSVLEETLQAVDAKAMVVGHTPQTVGVNCKYNCSIWRVDVGMSSGVLNSRPEVLEIIDDKARVIRTKTDRYSELQAAAYT*