Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682710 | XP_013456007.1 | 97.252 | 473 | 13 | 0 | 1 | 473 | 1 | 473 | 0.0 | 935 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682710 | sp|Q9SKN2|DRB2_ARATH | 69.722 | 360 | 87 | 7 | 1 | 343 | 1 | 355 | 2.36e-164 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682710 | A0A072ULT8 | 97.252 | 473 | 13 | 0 | 1 | 473 | 1 | 473 | 0.0 | 935 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0682710 | Msa0729550 | -0.805826 | 1.106772e-49 | -8.615850e-47 |
| Msa0682710 | Msa0899700 | -0.800859 | 1.182822e-48 | -8.615850e-47 |
| Msa0682710 | Msa1082820 | 0.802668 | 5.029070e-49 | -8.615850e-47 |
| Msa0197940 | Msa0682710 | 0.802185 | 6.325320e-49 | -8.615850e-47 |
| Msa0401340 | Msa0682710 | -0.804283 | 2.326540e-49 | -8.615850e-47 |
| Msa0417150 | Msa0682710 | -0.818676 | 1.731086e-52 | -8.615850e-47 |
| Msa0547180 | Msa0682710 | 0.939923 | 5.609831e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682710 | MtrunA17_Chr4g0029001 | 97.252 | 473 | 13 | 0 | 1 | 473 | 1 | 473 | 0.0 | 935 |
| Msa0682710 | MtrunA17_Chr2g0326721 | 75.443 | 395 | 71 | 8 | 1 | 377 | 1 | 387 | 0.0 | 560 |
| Msa0682710 | MtrunA17_Chr7g0273611 | 72.611 | 157 | 43 | 0 | 1 | 157 | 1 | 157 | 6.41e-78 | 251 |
| Msa0682710 | MtrunA17_Chr6g0461131 | 45.783 | 166 | 78 | 3 | 1 | 163 | 158 | 314 | 2.30e-34 | 135 |
| Msa0682710 | MtrunA17_Chr6g0456181 | 50.000 | 122 | 54 | 1 | 32 | 153 | 2 | 116 | 1.71e-25 | 100 |
| Msa0682710 | MtrunA17_Chr3g0132821 | 37.500 | 152 | 93 | 1 | 1 | 150 | 16 | 167 | 1.04e-21 | 98.6 |
| Msa0682710 | MtrunA17_Chr3g0118941 | 36.364 | 154 | 85 | 2 | 7 | 160 | 113 | 253 | 5.33e-20 | 91.7 |
| Msa0682710 | MtrunA17_Chr3g0118921 | 35.897 | 156 | 91 | 3 | 3 | 158 | 50 | 196 | 1.50e-18 | 86.3 |
| Msa0682710 | MtrunA17_Chr4g0002041 | 32.468 | 154 | 98 | 5 | 2 | 153 | 28 | 177 | 1.19e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682710 | AT2G28380.1 | 69.722 | 360 | 87 | 7 | 1 | 343 | 1 | 355 | 2.40e-165 | 474 |
| Msa0682710 | AT5G41070.1 | 70.899 | 189 | 48 | 1 | 1 | 189 | 1 | 182 | 9.90e-89 | 276 |
| Msa0682710 | AT3G26932.1 | 69.312 | 189 | 52 | 1 | 1 | 189 | 1 | 183 | 1.55e-87 | 272 |
| Msa0682710 | AT3G26932.2 | 69.312 | 189 | 52 | 1 | 1 | 189 | 1 | 183 | 1.55e-87 | 272 |
| Msa0682710 | AT3G62800.2 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.47e-35 | 135 |
| Msa0682710 | AT3G62800.1 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.47e-35 | 135 |
| Msa0682710 | AT3G62800.3 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.60e-35 | 134 |
| Msa0682710 | AT3G26932.3 | 56.075 | 107 | 41 | 1 | 83 | 189 | 25 | 125 | 3.34e-30 | 119 |
| Msa0682710 | AT1G09700.2 | 36.774 | 155 | 97 | 1 | 1 | 154 | 15 | 169 | 9.06e-22 | 95.5 |
| Msa0682710 | AT1G09700.1 | 36.774 | 155 | 97 | 1 | 1 | 154 | 15 | 169 | 3.93e-21 | 95.9 |
Find 148 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTTGTTTCTTATTCT+TGG | 0.064318 | 4_4:+44664836 | None:intergenic |
| GCTCCTGCAGCAGGGAATTT+AGG | 0.172441 | 4_4:+44663226 | None:intergenic |
| CGACGGGTCCATCGGCTTTC+TGG | 0.173751 | 4_4:+44663250 | None:intergenic |
| GGGGACACTGCGGCTGGTGG+CGG | 0.272028 | 4_4:+44663112 | None:intergenic |
| TGCTGGAATATTCTCAGTTT+TGG | 0.276286 | 4_4:+44662670 | None:intergenic |
| CTGCTGGCTGACGCCGTTGC+GGG | 0.279138 | 4_4:+44663310 | None:intergenic |
| GGTACAGATCCGATCCGTTT+TGG | 0.280569 | 4_4:+44666454 | None:intergenic |
| GGTCGGGTTGGAATGTTTAA+AGG | 0.290618 | 4_4:+44666483 | None:intergenic |
| TGCTTCGAGGTGATGTCTTT+TGG | 0.292647 | 4_4:+44663338 | None:intergenic |
| GGGACACTGCGGCTGGTGGC+GGG | 0.293035 | 4_4:+44663113 | None:intergenic |
| CCAACTTTGCTGACGGTAAC+AGG | 0.305627 | 4_4:+44662851 | None:intergenic |
| ATTGCATTCCTTATGGTAAC+TGG | 0.309636 | 4_4:+44663148 | None:intergenic |
| TGCCGCAGTACACAACTTTC+CGG | 0.311185 | 4_4:-44664932 | Msa0682710:CDS |
| CTCCTGCAGCAGGGAATTTA+GGG | 0.324666 | 4_4:+44663227 | None:intergenic |
| GGTTGAGGGCTGGTTGGCCT+TGG | 0.328316 | 4_4:+44663397 | None:intergenic |
| GGAAATGAAATCATAGCATT+TGG | 0.335358 | 4_4:+44663442 | None:intergenic |
| AAAGCTACCGTTAACTTTAA+CGG | 0.356873 | 4_4:-44666264 | Msa0682710:CDS |
| TACAGGTATTGCATTCCTTA+TGG | 0.359904 | 4_4:+44663141 | None:intergenic |
| GGAAGAATCTTTGATGTTGC+TGG | 0.369008 | 4_4:+44663370 | None:intergenic |
| TCTGCACCACTAGTTGGTGC+TGG | 0.373760 | 4_4:+44662704 | None:intergenic |
| GGACACTGCGGCTGGTGGCG+GGG | 0.375345 | 4_4:+44663114 | None:intergenic |
| ATGAATGAAGCTGGCAGAAC+AGG | 0.397708 | 4_4:+44662487 | None:intergenic |
| TTTGTGCCAGCTCTTGTAGC+TGG | 0.402118 | 4_4:+44666352 | None:intergenic |
| GATCTCGCCGTTAAAGTTAA+CGG | 0.411163 | 4_4:+44666257 | None:intergenic |
| TTGAACCGCGGCGCGTGATC+AGG | 0.411390 | 4_4:+44666285 | None:intergenic |
| TGCACTGTTTCAGATTCTGC+TGG | 0.412381 | 4_4:+44662653 | None:intergenic |
| ATAGGAACAGGTTCGTCTAC+TGG | 0.413046 | 4_4:+44662794 | None:intergenic |
| ACAGGTTCATCTATTATAAC+TGG | 0.414112 | 4_4:+44662869 | None:intergenic |
| ACAGGTTCGTCTACTGGAAT+TGG | 0.418444 | 4_4:+44662800 | None:intergenic |
| TGCAAGCTCTTCAACTGAAC+CGG | 0.422266 | 4_4:-44663548 | Msa0682710:CDS |
| TCATCTTTGCTGATAGGAAC+AGG | 0.424802 | 4_4:+44662782 | None:intergenic |
| GGTGGAGCAGCAGCATATAC+TGG | 0.428606 | 4_4:+44663028 | None:intergenic |
| CGCCCTAAATTCCCTGCTGC+AGG | 0.431001 | 4_4:-44663229 | Msa0682710:CDS |
| ACAACTTTCCGGTCAGGCTT+AGG | 0.437320 | 4_4:-44664921 | Msa0682710:CDS |
| CTTCAGACGGTAATTCAGTA+AGG | 0.439084 | 4_4:+44663486 | None:intergenic |
| ATGAGTAATGTAATAGTTGA+AGG | 0.440004 | 4_4:-44662569 | Msa0682710:three_prime_UTR |
| AAGAAATTGCACAAAGGGTA+GGG | 0.440702 | 4_4:-44664962 | Msa0682710:CDS |
| GCTGGATCATCTTTGCTGAT+AGG | 0.442655 | 4_4:+44662776 | None:intergenic |
| GCTGGTGGCGGGGAGAATAC+AGG | 0.442744 | 4_4:+44663124 | None:intergenic |
| TAAGGTGCTGCTCCTGCAGC+AGG | 0.445437 | 4_4:+44663217 | None:intergenic |
| AATTAGCTTCAGAGGAATCA+TGG | 0.446861 | 4_4:+44666532 | None:intergenic |
| GATGTTGCTGGTCGAGGTTG+AGG | 0.454441 | 4_4:+44663382 | None:intergenic |
| CTGCTTGCCGAATATTGATC+GGG | 0.455818 | 4_4:+44663053 | None:intergenic |
| TCGACTTTACTGATGGGAAC+AGG | 0.461334 | 4_4:+44662920 | None:intergenic |
| CCTGTTACCGTCAGCAAAGT+TGG | 0.461686 | 4_4:-44662851 | Msa0682710:CDS |
| GGAAACTTTGGTTGCTATGT+AGG | 0.464305 | 4_4:+44666507 | None:intergenic |
| TCCAGTTCGTCATTGTTCTC+CGG | 0.465341 | 4_4:+44663529 | None:intergenic |
| ATCTTTGATGTTGCTGGTCG+AGG | 0.467209 | 4_4:+44663376 | None:intergenic |
| ACCGGTACGGTGGAATTAGC+TGG | 0.468526 | 4_4:-44664882 | Msa0682710:CDS |
| AAAGAGAAAGTGAAGAAGAA+AGG | 0.471347 | 4_4:+44666594 | None:intergenic |
| TCCACCGTACCGGTGAAAAC+AGG | 0.472510 | 4_4:+44664891 | None:intergenic |
| CTTACAAGAAATTGCACAAA+GGG | 0.473469 | 4_4:-44664967 | Msa0682710:CDS |
| ACCGGAGAACAATGACGAAC+TGG | 0.476137 | 4_4:-44663530 | Msa0682710:CDS |
| TTAGCTGGAATTACATTCAC+TGG | 0.483760 | 4_4:-44664867 | Msa0682710:CDS |
| ATGTTTAAAGGTGGAAACTT+TGG | 0.487790 | 4_4:+44666495 | None:intergenic |
| AGAAGAAAACGGTGACATAA+TGG | 0.491096 | 4_4:+44663276 | None:intergenic |
| GTGGGAAAAGAAGTTCTCTC+TGG | 0.491244 | 4_4:+44662435 | None:intergenic |
| TAACTGGAGGTGCAACTCCC+TGG | 0.492953 | 4_4:+44663164 | None:intergenic |
| AAGAAAGGAAGAAGATGAAG+AGG | 0.493881 | 4_4:+44666609 | None:intergenic |
| ATGTTGCTGGTCGAGGTTGA+GGG | 0.497603 | 4_4:+44663383 | None:intergenic |
| GGAGCAACTCGTACTGGAAG+TGG | 0.497633 | 4_4:+44663076 | None:intergenic |
| AGCAGGGAATTTAGGGCGAC+GGG | 0.498423 | 4_4:+44663234 | None:intergenic |
| AGTATATGCTGCTGCTCCAC+CGG | 0.502788 | 4_4:-44663026 | Msa0682710:CDS |
| CAGTACACAACTTTCCGGTC+AGG | 0.503151 | 4_4:-44664927 | Msa0682710:CDS |
| GAAGTGGCCGCATTACTTGT+GGG | 0.503190 | 4_4:+44663092 | None:intergenic |
| ACATATGCGATCATCTTGCC+AGG | 0.504019 | 4_4:-44663182 | Msa0682710:CDS |
| ATATGTCGAATGGGAACATA+AGG | 0.504593 | 4_4:+44663199 | None:intergenic |
| GTGGCATAAACTACAGGTGC+TGG | 0.506558 | 4_4:+44662896 | None:intergenic |
| CTGCACCACTAGTTGGTGCT+GGG | 0.510943 | 4_4:+44662705 | None:intergenic |
| TCTCTTATGCACGTGTATGA+AGG | 0.514597 | 4_4:+44666312 | None:intergenic |
| ACTTGTGGGGACACTGCGGC+TGG | 0.514632 | 4_4:+44663106 | None:intergenic |
| ATTTAGGGCGACGGGTCCAT+CGG | 0.519139 | 4_4:+44663242 | None:intergenic |
| AAAAGACATCACCTCGAAGC+AGG | 0.519683 | 4_4:-44663336 | Msa0682710:CDS |
| ACTGCTGGCTGACGCCGTTG+CGG | 0.526695 | 4_4:+44663309 | None:intergenic |
| GATGATCGCATATGTCGAAT+GGG | 0.528345 | 4_4:+44663190 | None:intergenic |
| CAAGAAATTGCACAAAGGGT+AGG | 0.529625 | 4_4:-44664963 | Msa0682710:CDS |
| GTAGATGTCCTAAGCCTGAC+CGG | 0.533299 | 4_4:+44664913 | None:intergenic |
| TACAAAATTTCAGGATGAGA+CGG | 0.533377 | 4_4:-44665006 | Msa0682710:intron |
| TGCTGGATCGACTTTACTGA+TGG | 0.534715 | 4_4:+44662913 | None:intergenic |
| GTTGCGGGATGCCTGCTTCG+AGG | 0.535418 | 4_4:+44663325 | None:intergenic |
| GGTCGAGGTTGAGGGCTGGT+TGG | 0.535590 | 4_4:+44663391 | None:intergenic |
| ATTCAGTAAGGCTCGTGCTA+TGG | 0.536198 | 4_4:+44663498 | None:intergenic |
| ACAAAATTTCAGGATGAGAC+GGG | 0.538097 | 4_4:-44665005 | Msa0682710:intron |
| AAAGTTGTGTACTGCGGCAA+CGG | 0.538171 | 4_4:+44664936 | None:intergenic |
| CAGCAGGGAATTTAGGGCGA+CGG | 0.540209 | 4_4:+44663233 | None:intergenic |
| CTTTCTGGTGTAGAAGAAAA+CGG | 0.540395 | 4_4:+44663265 | None:intergenic |
| CTTCTACACCAGAAAGCCGA+TGG | 0.542335 | 4_4:-44663258 | Msa0682710:CDS |
| ATCTGAAACAGTGCAGAGGT+TGG | 0.542599 | 4_4:-44662645 | Msa0682710:CDS |
| GGAAGTGGCCGCATTACTTG+TGG | 0.543405 | 4_4:+44663091 | None:intergenic |
| TTACCGTCTGAAGGAAAAGA+TGG | 0.543974 | 4_4:-44663476 | Msa0682710:CDS |
| ATCTGTACCAGGTACAGCAC+TGG | 0.545644 | 4_4:-44666440 | Msa0682710:five_prime_UTR |
| GTTCGTCTACTGGAATTGGT+AGG | 0.546352 | 4_4:+44662804 | None:intergenic |
| AATGAATATATTATGTATGT+TGG | 0.546633 | 4_4:-44662530 | Msa0682710:three_prime_UTR |
| TGTGGGGACACTGCGGCTGG+TGG | 0.547384 | 4_4:+44663109 | None:intergenic |
| TTGCACCTCCAGTTACCATA+AGG | 0.547854 | 4_4:-44663156 | Msa0682710:CDS |
| AGTTTCAGTTTCAAAATCCA+AGG | 0.548542 | 4_4:-44663414 | Msa0682710:CDS |
| ACCCGACCCGAATCCCAAAA+CGG | 0.550435 | 4_4:-44666468 | Msa0682710:five_prime_UTR |
| TGCTGGTCGAGGTTGAGGGC+TGG | 0.550571 | 4_4:+44663387 | None:intergenic |
| AGAGGAGCAATGAATGAAGC+TGG | 0.550724 | 4_4:+44662478 | None:intergenic |
| AGATGATCGCATATGTCGAA+TGG | 0.550906 | 4_4:+44663189 | None:intergenic |
| TCCAGCTAATTCCACCGTAC+CGG | 0.551659 | 4_4:+44664881 | None:intergenic |
| CAAGAACCAGCTACAAGAGC+TGG | 0.553878 | 4_4:-44666358 | Msa0682710:CDS |
| ATCTATTATAACTGGTGGAG+TGG | 0.559937 | 4_4:+44662877 | None:intergenic |
| ACTGCTTGCCGAATATTGAT+CGG | 0.564033 | 4_4:+44663052 | None:intergenic |
| AATGGAACTGTGATCACTGC+TGG | 0.566081 | 4_4:+44663294 | None:intergenic |
| AAACGGATCGGATCTGTACC+AGG | 0.569427 | 4_4:-44666451 | Msa0682710:five_prime_UTR |
| TTCGTCTACTGGAATTGGTA+GGG | 0.571574 | 4_4:+44662805 | None:intergenic |
| CTGTTCAACACTTCGTCAAG+CGG | 0.576763 | 4_4:-44666217 | Msa0682710:CDS |
| AAAATGCAGCTATGGCAGCT+TGG | 0.578374 | 4_4:-44664812 | Msa0682710:CDS |
| AGAAATTGCACAAAGGGTAG+GGG | 0.578498 | 4_4:-44664961 | Msa0682710:CDS |
| ATTAGCTTCAGAGGAATCAT+GGG | 0.582292 | 4_4:+44666533 | None:intergenic |
| TGTAGGTGAATTAGCTTCAG+AGG | 0.584702 | 4_4:+44666524 | None:intergenic |
| CGGGTTGGAATGTTTAAAGG+TGG | 0.584826 | 4_4:+44666486 | None:intergenic |
| CCTCTCGTGAGATTCTTGCA+TGG | 0.587937 | 4_4:-44662460 | Msa0682710:three_prime_UTR |
| GGTGGAGTGGCATAAACTAC+AGG | 0.588054 | 4_4:+44662890 | None:intergenic |
| CTTACTGAATTACCGTCTGA+AGG | 0.590169 | 4_4:-44663485 | Msa0682710:CDS |
| CTTTCTAGAGAGAGAAAGTG+AGG | 0.591808 | 4_4:-44666398 | Msa0682710:five_prime_UTR |
| GGAACATTCAGCTGCTGAGG+TGG | 0.592650 | 4_4:-44666196 | Msa0682710:CDS |
| AGCGGAACATTCAGCTGCTG+AGG | 0.595272 | 4_4:-44666199 | Msa0682710:CDS |
| TTTGCAGCAAGAGAATGAGA+AGG | 0.595844 | 4_4:+44666147 | None:intergenic |
| GAATGTTCCAGTGCTGTACC+TGG | 0.596146 | 4_4:+44666433 | None:intergenic |
| ACCCGAATCCCAAAACGGAT+CGG | 0.600225 | 4_4:-44666463 | Msa0682710:five_prime_UTR |
| TCGAAGCAGGCATCCCGCAA+CGG | 0.609303 | 4_4:-44663323 | Msa0682710:CDS |
| GGTTCATCTATTATAACTGG+TGG | 0.609305 | 4_4:+44662872 | None:intergenic |
| TTGAAGGTTAGCATGAGCAA+TGG | 0.611246 | 4_4:-44662553 | Msa0682710:three_prime_UTR |
| TTATGCACGTGTATGAAGGA+AGG | 0.620347 | 4_4:+44666316 | None:intergenic |
| TCATACACGTGCATAAGAGA+AGG | 0.628300 | 4_4:-44666309 | Msa0682710:CDS |
| GCATTCCTTATGGTAACTGG+AGG | 0.628682 | 4_4:+44663151 | None:intergenic |
| CTTAGTTCTTTGTCTCATCG+TGG | 0.631933 | 4_4:-44666171 | Msa0682710:CDS |
| GATGACCCAGCACCAACTAG+TGG | 0.634509 | 4_4:-44662710 | Msa0682710:CDS |
| CAGTGTCCCCACAAGTAATG+CGG | 0.651092 | 4_4:-44663099 | Msa0682710:CDS |
| TGCTTGCCGAATATTGATCG+GGG | 0.653144 | 4_4:+44663054 | None:intergenic |
| GCTGGATCGACTTTACTGAT+GGG | 0.656207 | 4_4:+44662914 | None:intergenic |
| TCTAGAGAGAGAAAGTGAGG+AGG | 0.662787 | 4_4:-44666395 | Msa0682710:five_prime_UTR |
| CATATGCGATCATCTTGCCA+GGG | 0.665667 | 4_4:-44663181 | Msa0682710:CDS |
| AAGTGGCCGCATTACTTGTG+GGG | 0.666743 | 4_4:+44663093 | None:intergenic |
| ACAGGTTCATCTACTCGAAG+CGG | 0.668557 | 4_4:+44662938 | None:intergenic |
| AAGGTGCTGCTCCTGCAGCA+GGG | 0.668834 | 4_4:+44663218 | None:intergenic |
| TCTTACAAGAAATTGCACAA+AGG | 0.676644 | 4_4:-44664968 | Msa0682710:CDS |
| CAGAATCTGAAACAGTGCAG+AGG | 0.683225 | 4_4:-44662649 | Msa0682710:CDS |
| CCATGCAAGAATCTCACGAG+AGG | 0.687107 | 4_4:+44662460 | None:intergenic |
| TGATGGACCAACTTTGCTGA+CGG | 0.689018 | 4_4:+44662844 | None:intergenic |
| AAGGTCCTGATCACGCGCCG+CGG | 0.692375 | 4_4:-44666290 | Msa0682710:CDS |
| TTAACGGTAGCTTTGAACCG+CGG | 0.701686 | 4_4:+44666273 | None:intergenic |
| GCTTGCCGAATATTGATCGG+GGG | 0.701687 | 4_4:+44663055 | None:intergenic |
| GACCGGAAAGTTGTGTACTG+CGG | 0.716151 | 4_4:+44664930 | None:intergenic |
| CGAAGTGTTGAACAGTACTG+AGG | 0.718280 | 4_4:+44666225 | None:intergenic |
| CATTACTTGTGGGGACACTG+CGG | 0.741078 | 4_4:+44663102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTATTTTTGTTTTAT+TGG | - | chr4_4:44663339-44663358 | Msa0682710:CDS | 10.0% |
| !!! | ATAGAATTTTTATTTTGATA+TGG | - | chr4_4:44663404-44663423 | Msa0682710:CDS | 10.0% |
| !!! | TAGAATTTTTATTTTGATAT+GGG | - | chr4_4:44663405-44663424 | Msa0682710:CDS | 10.0% |
| !! | TAGAAAATAAAAAAAGACAA+GGG | + | chr4_4:44663116-44663135 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTGTTTCTTAAA+AGG | - | chr4_4:44663583-44663602 | Msa0682710:intron | 15.0% |
| !!! | TTAAGATTTGTTTCTTAAAA+GGG | - | chr4_4:44663584-44663603 | Msa0682710:intron | 15.0% |
| !! | AATGAATATATTATGTATGT+TGG | - | chr4_4:44666603-44666622 | Msa0682710:five_prime_UTR | 15.0% |
| !! | CTAGAAAATAAAAAAAGACA+AGG | + | chr4_4:44663117-44663136 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTAGAGTCTAA+CGG | - | chr4_4:44663124-44663143 | Msa0682710:CDS | 20.0% |
| !!! | TTTTGATATGGGTTTAAAAT+TGG | - | chr4_4:44663416-44663435 | Msa0682710:CDS | 20.0% |
| !!! | TAAGATTTGTTTCTTAAAAG+GGG | - | chr4_4:44663585-44663604 | Msa0682710:intron | 20.0% |
| !!! | TAAAGCATAGTTCTAAATTT+CGG | + | chr4_4:44663983-44664002 | None:intergenic | 20.0% |
| !!! | GCAATATTTCATTTTATGAT+CGG | + | chr4_4:44664456-44664475 | None:intergenic | 20.0% |
| !! | AGAATTTAAACAAATCACTA+TGG | + | chr4_4:44664932-44664951 | None:intergenic | 20.0% |
| !!! | ATCTTATATCCTTAATCTTT+TGG | - | chr4_4:44665450-44665469 | Msa0682710:intron | 20.0% |
| ! | TACTGATAAGTAGATAATTG+CGG | - | chr4_4:44663167-44663186 | Msa0682710:CDS | 25.0% |
| !! | TCCTTTGTTTCATTTCATTT+AGG | - | chr4_4:44663250-44663269 | Msa0682710:CDS | 25.0% |
| ! | TCCTAAATGAAATGAAACAA+AGG | + | chr4_4:44663254-44663273 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTGGTTCAATGA+AGG | - | chr4_4:44663350-44663369 | Msa0682710:CDS | 25.0% |
| ! | AATTATATACAACAAATCCG+TGG | + | chr4_4:44663621-44663640 | None:intergenic | 25.0% |
| ! | GTTTATCAATTCATATTGCA+TGG | - | chr4_4:44664054-44664073 | Msa0682710:intron | 25.0% |
| ! | CTTATCACTTACAAAATTTC+AGG | - | chr4_4:44664118-44664137 | Msa0682710:intron | 25.0% |
| ! | TATATGAATGACTGGAATAA+GGG | + | chr4_4:44664677-44664696 | None:intergenic | 25.0% |
| ! | TTATATGAATGACTGGAATA+AGG | + | chr4_4:44664678-44664697 | None:intergenic | 25.0% |
| ! | ATGGAATTTATATGAATGAC+TGG | + | chr4_4:44664685-44664704 | None:intergenic | 25.0% |
| !!! | TTAAGAAGTGTTATCAATCA+TGG | - | chr4_4:44664807-44664826 | Msa0682710:CDS | 25.0% |
| ! | TTTAAACAAATCACTATGGT+TGG | + | chr4_4:44664928-44664947 | None:intergenic | 25.0% |
| ! | TAACTTCTACTTGACAATAT+TGG | - | chr4_4:44664961-44664980 | Msa0682710:CDS | 25.0% |
| !!! | TGTTGCATCATTTTTTGATT+TGG | - | chr4_4:44664996-44665015 | Msa0682710:CDS | 25.0% |
| ! | GGAAAACAACTATAAAAACA+CGG | + | chr4_4:44665114-44665133 | None:intergenic | 25.0% |
| ! | ATGAAAATGATTGAATTGCA+GGG | + | chr4_4:44665145-44665164 | None:intergenic | 25.0% |
| ! | TAAACTATAGTTGTTAACAC+CGG | + | chr4_4:44665499-44665518 | None:intergenic | 25.0% |
| !!! | TTTTGAAACTGAAACTTCAT+TGG | + | chr4_4:44665715-44665734 | None:intergenic | 25.0% |
| ! | ATGAGTAATGTAATAGTTGA+AGG | - | chr4_4:44666564-44666583 | Msa0682710:five_prime_UTR | 25.0% |
| AAAGAGAAAGTGAAGAAGAA+AGG | + | chr4_4:44662542-44662561 | None:intergenic | 30.0% | |
| ATGTTTAAAGGTGGAAACTT+TGG | + | chr4_4:44662641-44662660 | None:intergenic | 30.0% | |
| AAAGCTACCGTTAACTTTAA+CGG | - | chr4_4:44662869-44662888 | Msa0682710:CDS | 30.0% | |
| TGAAGAAACAAAAACTCACA+AGG | + | chr4_4:44663015-44663034 | None:intergenic | 30.0% | |
| !!! | GCTTTTTGTTTTTCTTCTGT+CGG | - | chr4_4:44663040-44663059 | Msa0682710:CDS | 30.0% |
| ACTGATAAGTAGATAATTGC+GGG | - | chr4_4:44663168-44663187 | Msa0682710:CDS | 30.0% | |
| TTTCGGTAAAAGATACTCTT+TGG | + | chr4_4:44663519-44663538 | None:intergenic | 30.0% | |
| ! | TTTGTTTCTTAAAAGGGGAT+TGG | - | chr4_4:44663590-44663609 | Msa0682710:intron | 30.0% |
| ! | TTGTTTCTTAAAAGGGGATT+GGG | - | chr4_4:44663591-44663610 | Msa0682710:intron | 30.0% |
| ! | CACTTTAGAAGACAAGTAAA+AGG | + | chr4_4:44663766-44663785 | None:intergenic | 30.0% |
| !! | CTTTTACTTGTCTTCTAAAG+TGG | - | chr4_4:44663764-44663783 | Msa0682710:intron | 30.0% |
| !! | TCTTCTAAAGTGGAATTTGT+AGG | - | chr4_4:44663774-44663793 | Msa0682710:intron | 30.0% |
| ATATAGGTAACTGTAAACAC+AGG | + | chr4_4:44663832-44663851 | None:intergenic | 30.0% | |
| CATGACTGATGGAAAAATAT+AGG | + | chr4_4:44663848-44663867 | None:intergenic | 30.0% | |
| ! | CTATATTTTTCCATCAGTCA+TGG | - | chr4_4:44663846-44663865 | Msa0682710:intron | 30.0% |
| CTGCTAAAACCTTAATATTG+TGG | - | chr4_4:44663956-44663975 | Msa0682710:intron | 30.0% | |
| AATTTCGGTCCACAATATTA+AGG | + | chr4_4:44663968-44663987 | None:intergenic | 30.0% | |
| TACAAAATTTCAGGATGAGA+CGG | - | chr4_4:44664127-44664146 | Msa0682710:intron | 30.0% | |
| TCTTACAAGAAATTGCACAA+AGG | - | chr4_4:44664165-44664184 | Msa0682710:intron | 30.0% | |
| CTTACAAGAAATTGCACAAA+GGG | - | chr4_4:44664166-44664185 | Msa0682710:intron | 30.0% | |
| !! | GGTTTTGATGCTATATTCAT+GGG | + | chr4_4:44664435-44664454 | None:intergenic | 30.0% |
| ACAAATTAAACCGTGGTTAT+GGG | + | chr4_4:44664478-44664497 | None:intergenic | 30.0% | |
| TTTCATAATCTATGATGCTG+TGG | - | chr4_4:44664581-44664600 | Msa0682710:intron | 30.0% | |
| GATAAAAAGGAGAGCAAAAA+TGG | + | chr4_4:44664704-44664723 | None:intergenic | 30.0% | |
| CACAAAACTCACAGATAAAA+AGG | + | chr4_4:44664717-44664736 | None:intergenic | 30.0% | |
| CATGAAAATGATTGAATTGC+AGG | + | chr4_4:44665146-44665165 | None:intergenic | 30.0% | |
| !! | TGCCAAACACATTATTTTTC+AGG | - | chr4_4:44665164-44665183 | Msa0682710:intron | 30.0% |
| !! | GCCAAACACATTATTTTTCA+GGG | - | chr4_4:44665165-44665184 | Msa0682710:intron | 30.0% |
| ACAATCAATTAGCAAAACTG+AGG | + | chr4_4:44665306-44665325 | None:intergenic | 30.0% | |
| ATAACAATGCCTTAGATTGA+TGG | - | chr4_4:44665333-44665352 | Msa0682710:intron | 30.0% | |
| ! | GTAATTTTGTTCATTGACAG+TGG | - | chr4_4:44665552-44665571 | Msa0682710:intron | 30.0% |
| GGAAATGAAATCATAGCATT+TGG | + | chr4_4:44665694-44665713 | None:intergenic | 30.0% | |
| AGTTTCAGTTTCAAAATCCA+AGG | - | chr4_4:44665719-44665738 | Msa0682710:intron | 30.0% | |
| ACAGGTTCATCTATTATAAC+TGG | + | chr4_4:44666267-44666286 | None:intergenic | 30.0% | |
| AAGAAAGGAAGAAGATGAAG+AGG | + | chr4_4:44662527-44662546 | None:intergenic | 35.0% | |
| !! | CATGGGTTGTTTTCTGTTAA+GGG | + | chr4_4:44662586-44662605 | None:intergenic | 35.0% |
| !! | TCATGGGTTGTTTTCTGTTA+AGG | + | chr4_4:44662587-44662606 | None:intergenic | 35.0% |
| ! | ATTAGCTTCAGAGGAATCAT+GGG | + | chr4_4:44662603-44662622 | None:intergenic | 35.0% |
| ! | AATTAGCTTCAGAGGAATCA+TGG | + | chr4_4:44662604-44662623 | None:intergenic | 35.0% |
| ACTGATCATGTCAAACTCAA+AGG | + | chr4_4:44663473-44663492 | None:intergenic | 35.0% | |
| TTGTCACAACATCACGATTT+CGG | + | chr4_4:44663536-44663555 | None:intergenic | 35.0% | |
| GTATGTGACACACAACAAAA+AGG | + | chr4_4:44663680-44663699 | None:intergenic | 35.0% | |
| AAATTGGAACCTGAACTACA+CGG | + | chr4_4:44663806-44663825 | None:intergenic | 35.0% | |
| CTGTAAACACAGGAGAAAAT+TGG | + | chr4_4:44663822-44663841 | None:intergenic | 35.0% | |
| ! | CAATTTAGAACCATGACTGA+TGG | + | chr4_4:44663859-44663878 | None:intergenic | 35.0% |
| !! | ATGGTTCTAAATTGCAGTTG+TGG | - | chr4_4:44663865-44663884 | Msa0682710:intron | 35.0% |
| GTATGTCTTCATTGTGTCAT+TGG | - | chr4_4:44664076-44664095 | Msa0682710:intron | 35.0% | |
| ACAAAATTTCAGGATGAGAC+GGG | - | chr4_4:44664128-44664147 | Msa0682710:intron | 35.0% | |
| AAGAAATTGCACAAAGGGTA+GGG | - | chr4_4:44664171-44664190 | Msa0682710:intron | 35.0% | |
| TTAGCTGGAATTACATTCAC+TGG | - | chr4_4:44664266-44664285 | Msa0682710:intron | 35.0% | |
| ! | CTCTGCTTGTTTCTTATTCT+TGG | + | chr4_4:44664300-44664319 | None:intergenic | 35.0% |
| GAAAATCTTCACAGAAAAGC+TGG | + | chr4_4:44664375-44664394 | None:intergenic | 35.0% | |
| !! | CGGTTTTGATGCTATATTCA+TGG | + | chr4_4:44664436-44664455 | None:intergenic | 35.0% |
| TGAAATATTGCCCATAACCA+CGG | - | chr4_4:44664465-44664484 | Msa0682710:intron | 35.0% | |
| CACAAATTAAACCGTGGTTA+TGG | + | chr4_4:44664479-44664498 | None:intergenic | 35.0% | |
| !! | CATAACCACGGTTTAATTTG+TGG | - | chr4_4:44664477-44664496 | Msa0682710:intron | 35.0% |
| GGTTTCAAAAACAAGTATGC+AGG | + | chr4_4:44664627-44664646 | None:intergenic | 35.0% | |
| ACTATAGTAGCAATGCAGAA+TGG | - | chr4_4:44664767-44664786 | Msa0682710:intron | 35.0% | |
| CTATAGTAGCAATGCAGAAT+GGG | - | chr4_4:44664768-44664787 | Msa0682710:intron | 35.0% | |
| TATAGTAGCAATGCAGAATG+GGG | - | chr4_4:44664769-44664788 | Msa0682710:intron | 35.0% | |
| ! | CAATCATGGATTGCTACAAA+TGG | - | chr4_4:44664821-44664840 | Msa0682710:CDS | 35.0% |
| TGACAACACTTTGCACTAAA+TGG | - | chr4_4:44664890-44664909 | Msa0682710:CDS | 35.0% | |
| GTCAAGTAGAAGTTATAGTG+TGG | + | chr4_4:44664956-44664975 | None:intergenic | 35.0% | |
| !!! | GGCTTCAGGTGATTTTTTAA+TGG | + | chr4_4:44665073-44665092 | None:intergenic | 35.0% |
| GCCCTGAAAAATAATGTGTT+TGG | + | chr4_4:44665169-44665188 | None:intergenic | 35.0% | |
| GCTACACTACCAAAAGATTA+AGG | + | chr4_4:44665462-44665481 | None:intergenic | 35.0% | |
| ! | GATGTCTTTTGGCAAATTAG+AGG | + | chr4_4:44665787-44665806 | None:intergenic | 35.0% |
| AGAAGAAAACGGTGACATAA+TGG | + | chr4_4:44665860-44665879 | None:intergenic | 35.0% | |
| ! | CTTTCTGGTGTAGAAGAAAA+CGG | + | chr4_4:44665871-44665890 | None:intergenic | 35.0% |
| ATATGTCGAATGGGAACATA+AGG | + | chr4_4:44665937-44665956 | None:intergenic | 35.0% | |
| ATTGCATTCCTTATGGTAAC+TGG | + | chr4_4:44665988-44666007 | None:intergenic | 35.0% | |
| ! | TACAGGTATTGCATTCCTTA+TGG | + | chr4_4:44665995-44666014 | None:intergenic | 35.0% |
| ! | ATAGGTTCATCTTTTCGAAC+CGG | + | chr4_4:44666129-44666148 | None:intergenic | 35.0% |
| !! | TCATTTTTGCTGATGGGAAT+AGG | + | chr4_4:44666147-44666166 | None:intergenic | 35.0% |
| ATCTATTATAACTGGTGGAG+TGG | + | chr4_4:44666259-44666278 | None:intergenic | 35.0% | |
| GGTTCATCTATTATAACTGG+TGG | + | chr4_4:44666264-44666283 | None:intergenic | 35.0% | |
| !! | AATATTCTCAGTTTTGGCGT+CGG | + | chr4_4:44666460-44666479 | None:intergenic | 35.0% |
| ! | TGCTGGAATATTCTCAGTTT+TGG | + | chr4_4:44666466-44666485 | None:intergenic | 35.0% |
| ! | TGTAGGTGAATTAGCTTCAG+AGG | + | chr4_4:44662612-44662631 | None:intergenic | 40.0% |
| GGAAACTTTGGTTGCTATGT+AGG | + | chr4_4:44662629-44662648 | None:intergenic | 40.0% | |
| ! | CTTTCTAGAGAGAGAAAGTG+AGG | - | chr4_4:44662735-44662754 | Msa0682710:CDS | 40.0% |
| TTATGCACGTGTATGAAGGA+AGG | + | chr4_4:44662820-44662839 | None:intergenic | 40.0% | |
| TCTCTTATGCACGTGTATGA+AGG | + | chr4_4:44662824-44662843 | None:intergenic | 40.0% | |
| TCATACACGTGCATAAGAGA+AGG | - | chr4_4:44662824-44662843 | Msa0682710:CDS | 40.0% | |
| GATCTCGCCGTTAAAGTTAA+CGG | + | chr4_4:44662879-44662898 | None:intergenic | 40.0% | |
| ! | CTTAGTTCTTTGTCTCATCG+TGG | - | chr4_4:44662962-44662981 | Msa0682710:CDS | 40.0% |
| TTTGCAGCAAGAGAATGAGA+AGG | + | chr4_4:44662989-44663008 | None:intergenic | 40.0% | |
| !! | GAAGCTTTTTCCCTTTATGC+TGG | - | chr4_4:44663647-44663666 | Msa0682710:intron | 40.0% |
| TGTGACACACAACAAAAAGG+TGG | + | chr4_4:44663677-44663696 | None:intergenic | 40.0% | |
| CATTGCGAATGTTGACATTG+CGG | - | chr4_4:44663891-44663910 | Msa0682710:intron | 40.0% | |
| CAAGAAATTGCACAAAGGGT+AGG | - | chr4_4:44664170-44664189 | Msa0682710:intron | 40.0% | |
| AGAAATTGCACAAAGGGTAG+GGG | - | chr4_4:44664172-44664191 | Msa0682710:intron | 40.0% | |
| AGCAGAGAAAAATGCAGCTA+TGG | - | chr4_4:44664313-44664332 | Msa0682710:intron | 40.0% | |
| !! | CGTCTCTAAAGCAATGTAAG+TGG | - | chr4_4:44664345-44664364 | Msa0682710:intron | 40.0% |
| CACAACCACAAATTAAACCG+TGG | + | chr4_4:44664485-44664504 | None:intergenic | 40.0% | |
| !!! | GGTTGTGATCGTTGATTTTG+CGG | - | chr4_4:44664498-44664517 | Msa0682710:intron | 40.0% |
| !! | GTTGATTTTGCGGAGAATGT+GGG | - | chr4_4:44664508-44664527 | Msa0682710:intron | 40.0% |
| TGATGCTGTGGCAATAATTG+CGG | - | chr4_4:44664593-44664612 | Msa0682710:intron | 40.0% | |
| !! | TCTGTGAGTTTTGTGCATAG+TGG | - | chr4_4:44664722-44664741 | Msa0682710:intron | 40.0% |
| ! | TCATGGATTGCTACAAATGG+TGG | - | chr4_4:44664824-44664843 | Msa0682710:CDS | 40.0% |
| AAACACGGTATGCTAACAGA+GGG | + | chr4_4:44665099-44665118 | None:intergenic | 40.0% | |
| AAAACACGGTATGCTAACAG+AGG | + | chr4_4:44665100-44665119 | None:intergenic | 40.0% | |
| TTGAATTGCAGGGTTGTAGT+TGG | + | chr4_4:44665135-44665154 | None:intergenic | 40.0% | |
| CTGGAATTAGAAAAGTGGCT+GGG | + | chr4_4:44665266-44665285 | None:intergenic | 40.0% | |
| CATGGCTGGAATTAGAAAAG+TGG | + | chr4_4:44665271-44665290 | None:intergenic | 40.0% | |
| GCACAAACACCATCAATCTA+AGG | + | chr4_4:44665345-44665364 | None:intergenic | 40.0% | |
| GTAGCCATTCTATTAGCAAC+CGG | - | chr4_4:44665477-44665496 | Msa0682710:intron | 40.0% | |
| ! | AACACCGGTTGCTAATAGAA+TGG | + | chr4_4:44665484-44665503 | None:intergenic | 40.0% |
| CTTCAGACGGTAATTCAGTA+AGG | + | chr4_4:44665650-44665669 | None:intergenic | 40.0% | |
| CTTACTGAATTACCGTCTGA+AGG | - | chr4_4:44665648-44665667 | Msa0682710:intron | 40.0% | |
| TTACCGTCTGAAGGAAAAGA+TGG | - | chr4_4:44665657-44665676 | Msa0682710:intron | 40.0% | |
| ! | TTGCCATCTTTTCCTTCAGA+CGG | + | chr4_4:44665663-44665682 | None:intergenic | 40.0% |
| GGAAGAATCTTTGATGTTGC+TGG | + | chr4_4:44665766-44665785 | None:intergenic | 40.0% | |
| GATGATCGCATATGTCGAAT+GGG | + | chr4_4:44665946-44665965 | None:intergenic | 40.0% | |
| AGATGATCGCATATGTCGAA+TGG | + | chr4_4:44665947-44665966 | None:intergenic | 40.0% | |
| ACTGCTTGCCGAATATTGAT+CGG | + | chr4_4:44666084-44666103 | None:intergenic | 40.0% | |
| TCCCATCAGCAAAAATGATC+TGG | - | chr4_4:44666149-44666168 | Msa0682710:CDS | 40.0% | |
| !! | GCCAGATCATTTTTGCTGAT+GGG | + | chr4_4:44666153-44666172 | None:intergenic | 40.0% |
| !! | TGCCAGATCATTTTTGCTGA+TGG | + | chr4_4:44666154-44666173 | None:intergenic | 40.0% |
| TTCGTCTACTGGAATTGGTA+GGG | + | chr4_4:44666331-44666350 | None:intergenic | 40.0% | |
| TCATCTTTGCTGATAGGAAC+AGG | + | chr4_4:44666354-44666373 | None:intergenic | 40.0% | |
| !! | TTTTTAACTGCTGATGCTGC+TGG | + | chr4_4:44666378-44666397 | None:intergenic | 40.0% |
| ! | GTTTTATCTGCACCACTAGT+TGG | + | chr4_4:44666438-44666457 | None:intergenic | 40.0% |
| TTGAAGGTTAGCATGAGCAA+TGG | - | chr4_4:44666580-44666599 | Msa0682710:five_prime_UTR | 40.0% | |
| ! | CGGGTTGGAATGTTTAAAGG+TGG | + | chr4_4:44662650-44662669 | None:intergenic | 45.0% |
| !! | GGTCGGGTTGGAATGTTTAA+AGG | + | chr4_4:44662653-44662672 | None:intergenic | 45.0% |
| !!! | ATCCGATCCGTTTTGGGATT+CGG | + | chr4_4:44662675-44662694 | None:intergenic | 45.0% |
| ! | GTACAGATCCGATCCGTTTT+GGG | + | chr4_4:44662681-44662700 | None:intergenic | 45.0% |
| TCTAGAGAGAGAAAGTGAGG+AGG | - | chr4_4:44662738-44662757 | Msa0682710:CDS | 45.0% | |
| !! | TTAACGGTAGCTTTGAACCG+CGG | + | chr4_4:44662863-44662882 | None:intergenic | 45.0% |
| !! | CGAAGTGTTGAACAGTACTG+AGG | + | chr4_4:44662911-44662930 | None:intergenic | 45.0% |
| CTGTTCAACACTTCGTCAAG+CGG | - | chr4_4:44662916-44662935 | Msa0682710:CDS | 45.0% | |
| ! | AGGTGGTTAGCCAGCATAAA+GGG | + | chr4_4:44663660-44663679 | None:intergenic | 45.0% |
| ! | AAGGTGGTTAGCCAGCATAA+AGG | + | chr4_4:44663661-44663680 | None:intergenic | 45.0% |
| GTTGACATTGCGGCAAAATG+TGG | - | chr4_4:44663901-44663920 | Msa0682710:intron | 45.0% | |
| TTGCAGTTGCAATGCCATTG+TGG | - | chr4_4:44663930-44663949 | Msa0682710:intron | 45.0% | |
| !! | GGTTTTAGCAGTCTCCACAA+TGG | + | chr4_4:44663947-44663966 | None:intergenic | 45.0% |
| AAAGTTGTGTACTGCGGCAA+CGG | + | chr4_4:44664200-44664219 | None:intergenic | 45.0% | |
| ! | GGACATCTACCTGTTTTCAC+CGG | - | chr4_4:44664233-44664252 | Msa0682710:intron | 45.0% |
| ! | TCTACCTGTTTTCACCGGTA+CGG | - | chr4_4:44664238-44664257 | Msa0682710:intron | 45.0% |
| AAAATGCAGCTATGGCAGCT+TGG | - | chr4_4:44664321-44664340 | Msa0682710:intron | 45.0% | |
| !!! | CGTTGATTTTGCGGAGAATG+TGG | - | chr4_4:44664507-44664526 | Msa0682710:intron | 45.0% |
| CGGAGAATGTGGGTCAAATA+TGG | - | chr4_4:44664518-44664537 | Msa0682710:intron | 45.0% | |
| GTTGATGCAGTCTCAATCGT+GGG | - | chr4_4:44664540-44664559 | Msa0682710:intron | 45.0% | |
| ! | TACTAGGCTGGGTATTGCTA+GGG | + | chr4_4:44664648-44664667 | None:intergenic | 45.0% |
| TAGCAATACCCAGCCTAGTA+CGG | - | chr4_4:44664648-44664667 | Msa0682710:intron | 45.0% | |
| GGAATAAGGGAAACCGTACT+AGG | + | chr4_4:44664664-44664683 | None:intergenic | 45.0% | |
| TTGGAATATCACAGCTGAGC+AGG | - | chr4_4:44665015-44665034 | Msa0682710:intron | 45.0% | |
| TGGAATATCACAGCTGAGCA+GGG | - | chr4_4:44665016-44665035 | Msa0682710:intron | 45.0% | |
| GCTGGAATTAGAAAAGTGGC+TGG | + | chr4_4:44665267-44665286 | None:intergenic | 45.0% | |
| TGCAAGCTCTTCAACTGAAC+CGG | - | chr4_4:44665585-44665604 | Msa0682710:intron | 45.0% | |
| TCCAGTTCGTCATTGTTCTC+CGG | + | chr4_4:44665607-44665626 | None:intergenic | 45.0% | |
| ATTCAGTAAGGCTCGTGCTA+TGG | + | chr4_4:44665638-44665657 | None:intergenic | 45.0% | |
| ATCTTTGATGTTGCTGGTCG+AGG | + | chr4_4:44665760-44665779 | None:intergenic | 45.0% | |
| ! | TGCTTCGAGGTGATGTCTTT+TGG | + | chr4_4:44665798-44665817 | None:intergenic | 45.0% |
| AAAAGACATCACCTCGAAGC+AGG | - | chr4_4:44665797-44665816 | Msa0682710:intron | 45.0% | |
| AATGGAACTGTGATCACTGC+TGG | + | chr4_4:44665842-44665861 | None:intergenic | 45.0% | |
| ACATATGCGATCATCTTGCC+AGG | - | chr4_4:44665951-44665970 | Msa0682710:intron | 45.0% | |
| CATATGCGATCATCTTGCCA+GGG | - | chr4_4:44665952-44665971 | Msa0682710:intron | 45.0% | |
| TTGCACCTCCAGTTACCATA+AGG | - | chr4_4:44665977-44665996 | Msa0682710:intron | 45.0% | |
| GCATTCCTTATGGTAACTGG+AGG | + | chr4_4:44665985-44666004 | None:intergenic | 45.0% | |
| TTGCTCCCCCGATCAATATT+CGG | - | chr4_4:44666073-44666092 | Msa0682710:intron | 45.0% | |
| TGCTTGCCGAATATTGATCG+GGG | + | chr4_4:44666082-44666101 | None:intergenic | 45.0% | |
| CTGCTTGCCGAATATTGATC+GGG | + | chr4_4:44666083-44666102 | None:intergenic | 45.0% | |
| ACAGGTTCATCTACTCGAAG+CGG | + | chr4_4:44666198-44666217 | None:intergenic | 45.0% | |
| TCGACTTTACTGATGGGAAC+AGG | + | chr4_4:44666216-44666235 | None:intergenic | 45.0% | |
| ! | GCTGGATCGACTTTACTGAT+GGG | + | chr4_4:44666222-44666241 | None:intergenic | 45.0% |
| ! | TGCTGGATCGACTTTACTGA+TGG | + | chr4_4:44666223-44666242 | None:intergenic | 45.0% |
| ! | TGATGGACCAACTTTGCTGA+CGG | + | chr4_4:44666292-44666311 | None:intergenic | 45.0% |
| GTTCGTCTACTGGAATTGGT+AGG | + | chr4_4:44666332-44666351 | None:intergenic | 45.0% | |
| ACAGGTTCGTCTACTGGAAT+TGG | + | chr4_4:44666336-44666355 | None:intergenic | 45.0% | |
| ATAGGAACAGGTTCGTCTAC+TGG | + | chr4_4:44666342-44666361 | None:intergenic | 45.0% | |
| GCTGGATCATCTTTGCTGAT+AGG | + | chr4_4:44666360-44666379 | None:intergenic | 45.0% | |
| TGCACTGTTTCAGATTCTGC+TGG | + | chr4_4:44666483-44666502 | None:intergenic | 45.0% | |
| ! | CAGAATCTGAAACAGTGCAG+AGG | - | chr4_4:44666484-44666503 | Msa0682710:five_prime_UTR | 45.0% |
| ! | ATCTGAAACAGTGCAGAGGT+TGG | - | chr4_4:44666488-44666507 | Msa0682710:five_prime_UTR | 45.0% |
| ATGAATGAAGCTGGCAGAAC+AGG | + | chr4_4:44666649-44666668 | None:intergenic | 45.0% | |
| AGAGGAGCAATGAATGAAGC+TGG | + | chr4_4:44666658-44666677 | None:intergenic | 45.0% | |
| !!! | ATCCGTTTTGGGATTCGGGT+CGG | + | chr4_4:44662670-44662689 | None:intergenic | 50.0% |
| ACCCGAATCCCAAAACGGAT+CGG | - | chr4_4:44662670-44662689 | Msa0682710:CDS | 50.0% | |
| !!! | TCCGATCCGTTTTGGGATTC+GGG | + | chr4_4:44662674-44662693 | None:intergenic | 50.0% |
| ! | GGTACAGATCCGATCCGTTT+TGG | + | chr4_4:44662682-44662701 | None:intergenic | 50.0% |
| AAACGGATCGGATCTGTACC+AGG | - | chr4_4:44662682-44662701 | Msa0682710:CDS | 50.0% | |
| ATCTGTACCAGGTACAGCAC+TGG | - | chr4_4:44662693-44662712 | Msa0682710:CDS | 50.0% | |
| GAATGTTCCAGTGCTGTACC+TGG | + | chr4_4:44662703-44662722 | None:intergenic | 50.0% | |
| CAAGAACCAGCTACAAGAGC+TGG | - | chr4_4:44662775-44662794 | Msa0682710:CDS | 50.0% | |
| TTTGTGCCAGCTCTTGTAGC+TGG | + | chr4_4:44662784-44662803 | None:intergenic | 50.0% | |
| AAAGGGGATTGGGCTTTCCA+CGG | - | chr4_4:44663601-44663620 | Msa0682710:intron | 50.0% | |
| AGGATCCTACCGTGTAGTTC+AGG | - | chr4_4:44663794-44663813 | Msa0682710:intron | 50.0% | |
| TGGAACCTGAACTACACGGT+AGG | + | chr4_4:44663802-44663821 | None:intergenic | 50.0% | |
| TGCCGCAGTACACAACTTTC+CGG | - | chr4_4:44664201-44664220 | Msa0682710:intron | 50.0% | |
| GACCGGAAAGTTGTGTACTG+CGG | + | chr4_4:44664206-44664225 | None:intergenic | 50.0% | |
| CAGTACACAACTTTCCGGTC+AGG | - | chr4_4:44664206-44664225 | Msa0682710:intron | 50.0% | |
| ACAACTTTCCGGTCAGGCTT+AGG | - | chr4_4:44664212-44664231 | Msa0682710:intron | 50.0% | |
| GTAGATGTCCTAAGCCTGAC+CGG | + | chr4_4:44664223-44664242 | None:intergenic | 50.0% | |
| TCCAGCTAATTCCACCGTAC+CGG | + | chr4_4:44664255-44664274 | None:intergenic | 50.0% | |
| ! | GGTTGATGCAGTCTCAATCG+TGG | - | chr4_4:44664539-44664558 | Msa0682710:intron | 50.0% |
| !! | TCGTGGGTGCGTTTTGTTCT+TGG | - | chr4_4:44664556-44664575 | Msa0682710:intron | 50.0% |
| ! | GTACTAGGCTGGGTATTGCT+AGG | + | chr4_4:44664649-44664668 | None:intergenic | 50.0% |
| AAGGGAAACCGTACTAGGCT+GGG | + | chr4_4:44664659-44664678 | None:intergenic | 50.0% | |
| TAAGGGAAACCGTACTAGGC+TGG | + | chr4_4:44664660-44664679 | None:intergenic | 50.0% | |
| TGAGCAGGGACAATGGATCT+AGG | - | chr4_4:44665030-44665049 | Msa0682710:intron | 50.0% | |
| GAGCAGGGACAATGGATCTA+GGG | - | chr4_4:44665031-44665050 | Msa0682710:intron | 50.0% | |
| GGGACAATGGATCTAGGGAT+TGG | - | chr4_4:44665036-44665055 | Msa0682710:intron | 50.0% | |
| !! | GTGGCTGGGACTTGTTGTAA+CGG | + | chr4_4:44665252-44665271 | None:intergenic | 50.0% |
| CTGAGGCAGAGAAGTTGACA+TGG | + | chr4_4:44665289-44665308 | None:intergenic | 50.0% | |
| ACCGGAGAACAATGACGAAC+TGG | - | chr4_4:44665603-44665622 | Msa0682710:intron | 50.0% | |
| ATGTTGCTGGTCGAGGTTGA+GGG | + | chr4_4:44665753-44665772 | None:intergenic | 50.0% | |
| CTTCTACACCAGAAAGCCGA+TGG | - | chr4_4:44665875-44665894 | Msa0682710:intron | 50.0% | |
| CTCCTGCAGCAGGGAATTTA+GGG | + | chr4_4:44665909-44665928 | None:intergenic | 50.0% | |
| CATTACTTGTGGGGACACTG+CGG | + | chr4_4:44666034-44666053 | None:intergenic | 50.0% | |
| CAGTGTCCCCACAAGTAATG+CGG | - | chr4_4:44666034-44666053 | Msa0682710:intron | 50.0% | |
| AAGTGGCCGCATTACTTGTG+GGG | + | chr4_4:44666043-44666062 | None:intergenic | 50.0% | |
| GAAGTGGCCGCATTACTTGT+GGG | + | chr4_4:44666044-44666063 | None:intergenic | 50.0% | |
| GCTTGCCGAATATTGATCGG+GGG | + | chr4_4:44666081-44666100 | None:intergenic | 50.0% | |
| AGTATATGCTGCTGCTCCAC+CGG | - | chr4_4:44666107-44666126 | Msa0682710:intron | 50.0% | |
| ! | GGTTCATCTTTTCGAACCGG+TGG | + | chr4_4:44666126-44666145 | None:intergenic | 50.0% |
| GTGGCATAAACTACAGGTGC+TGG | + | chr4_4:44666240-44666259 | None:intergenic | 50.0% | |
| GGTGGAGTGGCATAAACTAC+AGG | + | chr4_4:44666246-44666265 | None:intergenic | 50.0% | |
| CCAACTTTGCTGACGGTAAC+AGG | + | chr4_4:44666285-44666304 | None:intergenic | 50.0% | |
| CCTGTTACCGTCAGCAAAGT+TGG | - | chr4_4:44666282-44666301 | Msa0682710:CDS | 50.0% | |
| ! | GCAGCATTTTCTGCTGGTGA+TGG | + | chr4_4:44666309-44666328 | None:intergenic | 50.0% |
| CCATGCAAGAATCTCACGAG+AGG | + | chr4_4:44666676-44666695 | None:intergenic | 50.0% | |
| CCTCTCGTGAGATTCTTGCA+TGG | - | chr4_4:44666673-44666692 | Msa0682710:five_prime_UTR | 50.0% | |
| !!! | TTTTGGGATTCGGGTCGGGT+TGG | + | chr4_4:44662665-44662684 | None:intergenic | 55.0% |
| ACCCGACCCGAATCCCAAAA+CGG | - | chr4_4:44662665-44662684 | Msa0682710:CDS | 55.0% | |
| !!! | TCCGTTTTGGGATTCGGGTC+GGG | + | chr4_4:44662669-44662688 | None:intergenic | 55.0% |
| AGCGGAACATTCAGCTGCTG+AGG | - | chr4_4:44662934-44662953 | Msa0682710:CDS | 55.0% | |
| GGAACATTCAGCTGCTGAGG+TGG | - | chr4_4:44662937-44662956 | Msa0682710:CDS | 55.0% | |
| ! | ACCTGTTTTCACCGGTACGG+TGG | - | chr4_4:44664241-44664260 | Msa0682710:intron | 55.0% |
| ! | TCCACCGTACCGGTGAAAAC+AGG | + | chr4_4:44664245-44664264 | None:intergenic | 55.0% |
| ACCGGTACGGTGGAATTAGC+TGG | - | chr4_4:44664251-44664270 | Msa0682710:intron | 55.0% | |
| TCACAGCTGAGCAGGGACAA+TGG | - | chr4_4:44665023-44665042 | Msa0682710:intron | 55.0% | |
| CTAACAGAGGGTGAGGCTTC+AGG | + | chr4_4:44665087-44665106 | None:intergenic | 55.0% | |
| CGGTATGCTAACAGAGGGTG+AGG | + | chr4_4:44665094-44665113 | None:intergenic | 55.0% | |
| GGCAGAGAAGTTGACATGGC+TGG | + | chr4_4:44665285-44665304 | None:intergenic | 55.0% | |
| GATGTTGCTGGTCGAGGTTG+AGG | + | chr4_4:44665754-44665773 | None:intergenic | 55.0% | |
| ! | ATTTAGGGCGACGGGTCCAT+CGG | + | chr4_4:44665894-44665913 | None:intergenic | 55.0% |
| ! | AGCAGGGAATTTAGGGCGAC+GGG | + | chr4_4:44665902-44665921 | None:intergenic | 55.0% |
| ! | CAGCAGGGAATTTAGGGCGA+CGG | + | chr4_4:44665903-44665922 | None:intergenic | 55.0% |
| GCTCCTGCAGCAGGGAATTT+AGG | + | chr4_4:44665910-44665929 | None:intergenic | 55.0% | |
| ! | TAACTGGAGGTGCAACTCCC+TGG | + | chr4_4:44665972-44665991 | None:intergenic | 55.0% |
| GGAAGTGGCCGCATTACTTG+TGG | + | chr4_4:44666045-44666064 | None:intergenic | 55.0% | |
| GGAGCAACTCGTACTGGAAG+TGG | + | chr4_4:44666060-44666079 | None:intergenic | 55.0% | |
| GGTGGAGCAGCAGCATATAC+TGG | + | chr4_4:44666108-44666127 | None:intergenic | 55.0% | |
| ! | GGTAGGGCAGCATTTTCTGC+TGG | + | chr4_4:44666315-44666334 | None:intergenic | 55.0% |
| GATGACCCAGCACCAACTAG+TGG | - | chr4_4:44666423-44666442 | Msa0682710:five_prime_UTR | 55.0% | |
| ! | CTGCACCACTAGTTGGTGCT+GGG | + | chr4_4:44666431-44666450 | None:intergenic | 55.0% |
| ! | TCTGCACCACTAGTTGGTGC+TGG | + | chr4_4:44666432-44666451 | None:intergenic | 55.0% |
| TCGAAGCAGGCATCCCGCAA+CGG | - | chr4_4:44665810-44665829 | Msa0682710:intron | 60.0% | |
| CGCCCTAAATTCCCTGCTGC+AGG | - | chr4_4:44665904-44665923 | Msa0682710:intron | 60.0% | |
| !! | AAGGTGCTGCTCCTGCAGCA+GGG | + | chr4_4:44665918-44665937 | None:intergenic | 60.0% |
| !! | TAAGGTGCTGCTCCTGCAGC+AGG | + | chr4_4:44665919-44665938 | None:intergenic | 60.0% |
| ATCGGGGGAGCAACTCGTAC+TGG | + | chr4_4:44666066-44666085 | None:intergenic | 60.0% | |
| AAGGTCCTGATCACGCGCCG+CGG | - | chr4_4:44662843-44662862 | Msa0682710:CDS | 65.0% | |
| TTGAACCGCGGCGCGTGATC+AGG | + | chr4_4:44662851-44662870 | None:intergenic | 65.0% | |
| !! | GGTTGAGGGCTGGTTGGCCT+TGG | + | chr4_4:44665739-44665758 | None:intergenic | 65.0% |
| ! | GGTCGAGGTTGAGGGCTGGT+TGG | + | chr4_4:44665745-44665764 | None:intergenic | 65.0% |
| TGCTGGTCGAGGTTGAGGGC+TGG | + | chr4_4:44665749-44665768 | None:intergenic | 65.0% | |
| GTTGCGGGATGCCTGCTTCG+AGG | + | chr4_4:44665811-44665830 | None:intergenic | 65.0% | |
| ! | ACTGCTGGCTGACGCCGTTG+CGG | + | chr4_4:44665827-44665846 | None:intergenic | 65.0% |
| !! | CGACGGGTCCATCGGCTTTC+TGG | + | chr4_4:44665886-44665905 | None:intergenic | 65.0% |
| !! | GCTGGTGGCGGGGAGAATAC+AGG | + | chr4_4:44666012-44666031 | None:intergenic | 65.0% |
| ACTTGTGGGGACACTGCGGC+TGG | + | chr4_4:44666030-44666049 | None:intergenic | 65.0% | |
| ! | CTGCTGGCTGACGCCGTTGC+GGG | + | chr4_4:44665826-44665845 | None:intergenic | 70.0% |
| TGTGGGGACACTGCGGCTGG+TGG | + | chr4_4:44666027-44666046 | None:intergenic | 70.0% | |
| ! | GGACACTGCGGCTGGTGGCG+GGG | + | chr4_4:44666022-44666041 | None:intergenic | 75.0% |
| GGGACACTGCGGCTGGTGGC+GGG | + | chr4_4:44666023-44666042 | None:intergenic | 75.0% | |
| GGGGACACTGCGGCTGGTGG+CGG | + | chr4_4:44666024-44666043 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44662440 | 44666715 | 44662440 | ID=Msa0682710;Name=Msa0682710 |
| chr4_4 | mRNA | 44662440 | 44666715 | 44662440 | ID=Msa0682710-mRNA-1;Parent=Msa0682710;Name=Msa0682710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=330|1|1|1|1|1|3|188|473 |
| chr4_4 | exon | 44662440 | 44663583 | 44662440 | ID=Msa0682710-mRNA-1:exon:10760;Parent=Msa0682710-mRNA-1 |
| chr4_4 | exon | 44664796 | 44665015 | 44664796 | ID=Msa0682710-mRNA-1:exon:10759;Parent=Msa0682710-mRNA-1 |
| chr4_4 | exon | 44666140 | 44666715 | 44666140 | ID=Msa0682710-mRNA-1:exon:10758;Parent=Msa0682710-mRNA-1 |
| chr4_4 | five_prime_UTR | 44666386 | 44666715 | 44666386 | ID=Msa0682710-mRNA-1:five_prime_utr;Parent=Msa0682710-mRNA-1 |
| chr4_4 | CDS | 44666140 | 44666385 | 44666140 | ID=Msa0682710-mRNA-1:cds;Parent=Msa0682710-mRNA-1 |
| chr4_4 | CDS | 44664796 | 44665015 | 44664796 | ID=Msa0682710-mRNA-1:cds;Parent=Msa0682710-mRNA-1 |
| chr4_4 | CDS | 44662628 | 44663583 | 44662628 | ID=Msa0682710-mRNA-1:cds;Parent=Msa0682710-mRNA-1 |
| chr4_4 | three_prime_UTR | 44662440 | 44662627 | 44662440 | ID=Msa0682710-mRNA-1:three_prime_utr;Parent=Msa0682710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
