AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420800 MtrunA17_Chr3g0120751 94.911 393 3 2 1 393 122 497 0.0 754
Msa0420800 MtrunA17_Chr6g0459101 30.213 235 143 7 8 226 135 364 3.09e-20 92.4
Msa0420800 MtrunA17_Chr4g0072481 26.519 181 127 5 36 212 234 412 5.84e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420800 AT3G07670.1 75.573 393 79 2 1 393 129 504 0.0 595
Msa0420800 AT3G07670.2 75.718 383 76 2 11 393 1 366 0.0 580
Msa0420800 AT5G14260.4 30.400 250 149 8 8 241 148 388 1.64e-22 99.0
Msa0420800 AT5G14260.2 30.830 253 144 8 8 241 148 388 2.65e-22 99.0
Msa0420800 AT5G14260.3 30.830 253 144 8 8 241 148 388 2.65e-22 99.0
Msa0420800 AT5G14260.1 30.830 253 144 8 8 241 148 388 2.65e-22 99.0
Msa0420800 AT3G55080.3 29.565 230 138 8 5 225 16 230 3.79e-20 91.7
Msa0420800 AT3G55080.5 29.565 230 138 8 5 225 16 230 3.79e-20 91.7
Msa0420800 AT3G55080.1 29.565 230 138 8 5 225 100 314 6.17e-20 91.7
Msa0420800 AT3G55080.4 29.439 214 127 8 21 225 1 199 1.42e-18 86.7
Msa0420800 AT3G55080.2 29.224 219 126 9 21 225 1 204 1.92e-17 83.2
Msa0420800 AT2G18850.1 32.283 127 81 3 86 208 286 411 1.03e-13 73.2
Msa0420800 AT2G18850.2 32.283 127 81 3 86 208 286 411 1.04e-13 73.2

Find 89 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGAAGAAATCAGGGTATT+TGG 0.193374 3_2:-69555195 None:intergenic
GAAAGGACTAATAATGTTAT+TGG 0.198637 3_2:+69554989 Msa0420800:CDS
TTCAATACTTCACCAGCTTC+TGG 0.207488 3_2:-69553512 None:intergenic
AAAGGCTTGAAAATCTTTAA+TGG 0.210155 3_2:+69556831 Msa0420800:CDS
TGGTTGGCCATTGGAGTTAA+TGG 0.222279 3_2:+69556201 Msa0420800:CDS
TGAAAATCTTTAATGGGTTC+TGG 0.228182 3_2:+69556838 Msa0420800:CDS
GTCTTCTGTTGAGTTGTTTC+GGG 0.232871 3_2:-69556612 None:intergenic
TTAGAACTGTTGAAGAAATA+TGG 0.237492 3_2:+69556061 Msa0420800:CDS
TAATGATTTCAAAAGCAATT+TGG 0.240764 3_2:+69556500 Msa0420800:CDS
CAGTTCTAACTTCTCCTTAT+AGG 0.242836 3_2:-69556047 None:intergenic
TTGAAGAAATATGGATTATC+AGG 0.251255 3_2:+69556070 Msa0420800:CDS
AATGCTTGCTCCTCTATTTC+AGG 0.265403 3_2:-69556402 None:intergenic
AACCATACTCACTTCTTTAC+TGG 0.272010 3_2:+69553642 Msa0420800:CDS
TGTGATGTAATTACCTCTTC+AGG 0.272230 3_2:-69555215 None:intergenic
AAATAAAACTACCTCGAAAA+AGG 0.280033 3_2:+69556368 Msa0420800:CDS
TGAGACTAGCTTCACTTATA+AGG 0.286121 3_2:-69553574 None:intergenic
GTAGGTTCGGTTGCCCTCTA+TGG 0.292815 3_2:+69555508 Msa0420800:intron
CTTGGATTCGTGCCCTCCTT+TGG 0.311412 3_2:-69555980 None:intergenic
AGTCTTCTGTTGAGTTGTTT+CGG 0.314214 3_2:-69556613 None:intergenic
ACACAGGTGTTTATTTCATA+TGG 0.317932 3_2:+69555914 Msa0420800:intron
ACTTGGAAGCTTCACAGATT+AGG 0.329419 3_2:+69554954 Msa0420800:CDS
ACCTCTTCAGGGAAGAAATC+AGG 0.336812 3_2:-69555203 None:intergenic
ATGAGGACTGGTGAATTAAA+AGG 0.337001 3_2:+69556813 Msa0420800:CDS
CTTGGAAGCTTCACAGATTA+GGG 0.342197 3_2:+69554955 Msa0420800:CDS
AAGGCTTGAAAATCTTTAAT+GGG 0.349585 3_2:+69556832 Msa0420800:CDS
CAGATGGTTCAGTTATATAT+CGG 0.353139 3_2:+69553607 Msa0420800:CDS
TACCTGCTCACCTGGTTGAT+AGG 0.356905 3_2:-69555725 None:intergenic
GAAAGAATGCATTGGTTCCT+TGG 0.361542 3_2:+69555534 Msa0420800:CDS
AAAATACAACAAGTTCTTAC+AGG 0.366598 3_2:+69556461 Msa0420800:CDS
GGCCAACCAGTAATCCTTAT+AGG 0.372376 3_2:-69556187 None:intergenic
GGTAAGTGGATCGCTAGATT+TGG 0.375776 3_2:+69556579 Msa0420800:intron
GTTGCAAGCAATGGCCAATC+TGG 0.384726 3_2:-69553548 None:intergenic
GAAATCCGATGAGTCCTATA+AGG 0.391559 3_2:+69556033 Msa0420800:CDS
TACCAGTAAAGAAGTGAGTA+TGG 0.407176 3_2:-69553644 None:intergenic
GGGGAGCTTCTGTTATCATA+TGG 0.410226 3_2:+69555950 Msa0420800:CDS
AAAAGAATTCAGTTCCAGAT+TGG 0.424118 3_2:+69553534 Msa0420800:CDS
TCTCCAGATACAATGATATG+AGG 0.424444 3_2:+69555159 Msa0420800:intron
TCAATACTTCACCAGCTTCT+GGG 0.439132 3_2:-69553511 None:intergenic
AAAGAATGCATTGGTTCCTT+GGG 0.460470 3_2:+69555535 Msa0420800:CDS
AAGGATTACTGGTTGGCCAT+TGG 0.479274 3_2:+69556192 Msa0420800:CDS
AGCAGAACTAGATCGCTACT+TGG 0.487105 3_2:+69554937 Msa0420800:CDS
TCCCTATCAACCAGGTGAGC+AGG 0.488328 3_2:+69555723 Msa0420800:CDS
CTTGAGATATCCTGAAATAG+AGG 0.493097 3_2:+69556392 Msa0420800:CDS
GATTATGATAAATCGTCAAA+GGG 0.494942 3_2:+69555679 Msa0420800:CDS
GAGTCCTTCAAATGGTCATT+CGG 0.496702 3_2:+69555321 Msa0420800:CDS
TTCCTATAAGGATTACTGGT+TGG 0.499844 3_2:+69556185 Msa0420800:CDS
CCCTGATTTCTTCCCTGAAG+AGG 0.501319 3_2:+69555202 Msa0420800:CDS
ACCTGCTCACCTGGTTGATA+GGG 0.506098 3_2:-69555724 None:intergenic
GGATTATGATAAATCGTCAA+AGG 0.508301 3_2:+69555678 Msa0420800:CDS
GAGTGGAGCTGCCCAGAAGC+TGG 0.508975 3_2:+69553500 Msa0420800:CDS
CGATATATAACTGAACCATC+TGG 0.510053 3_2:-69553606 None:intergenic
TGCATTCTTTCCATCCATAG+AGG 0.513905 3_2:-69555522 None:intergenic
GTGATGTAATTACCTCTTCA+GGG 0.518826 3_2:-69555214 None:intergenic
GAAGAAGACTGAGGGATATG+AGG 0.527158 3_2:+69556796 Msa0420800:CDS
AATGCCGAATGACCATTTGA+AGG 0.527488 3_2:-69555325 None:intergenic
ATCATATGGATTTGTTCCAA+AGG 0.534845 3_2:+69555964 Msa0420800:CDS
CCTCTTCAGGGAAGAAATCA+GGG 0.543445 3_2:-69555202 None:intergenic
TTGATCGATCCACAGGTAAG+TGG 0.549849 3_2:+69556565 Msa0420800:intron
GTTCGGTTGCCCTCTATGGA+TGG 0.550112 3_2:+69555512 Msa0420800:CDS
TCTATGATTACCTGCTCACC+TGG 0.552923 3_2:-69555733 None:intergenic
GACAACTCAACTGAATCACT+TGG 0.561180 3_2:-69555998 None:intergenic
TTCTGGAATCGTTTCCAATG+AGG 0.561253 3_2:+69556855 Msa0420800:CDS
TCAACATCGAGTCCTTCAAA+TGG 0.570581 3_2:+69555313 Msa0420800:CDS
TATGGATTTGTTCCAAAGGA+GGG 0.574263 3_2:+69555968 Msa0420800:CDS
GCATAAGCCATTAACTCCAA+TGG 0.580262 3_2:-69556208 None:intergenic
ATAAGGTAAGTTGCAAGCAA+TGG 0.582668 3_2:-69553557 None:intergenic
CTCCAGATACAATGATATGA+GGG 0.583933 3_2:+69555160 Msa0420800:intron
GTCTCATGAAATCTTCCAGA+TGG 0.584762 3_2:+69553591 Msa0420800:CDS
AGACTGAGGGATATGAGGAC+TGG 0.586138 3_2:+69556801 Msa0420800:CDS
ATATGGATTTGTTCCAAAGG+AGG 0.589672 3_2:+69555967 Msa0420800:CDS
GCATTCTTTCCATCCATAGA+GGG 0.590910 3_2:-69555521 None:intergenic
CTTCTCCTTATAGGACTCAT+CGG 0.591036 3_2:-69556038 None:intergenic
TGAAGAAATATGGATTATCA+GGG 0.595613 3_2:+69556071 Msa0420800:CDS
CTTTCTAAAGCAGCTAGCCG+TGG 0.603623 3_2:+69556636 Msa0420800:CDS
TTAGGGAGAGAGCAATTGAA+AGG 0.606641 3_2:+69554972 Msa0420800:CDS
ACAACAAGTTCTTACAGGCA+AGG 0.611650 3_2:+69556466 Msa0420800:CDS
TATGGATGGAAAGAATGCAT+TGG 0.613912 3_2:+69555526 Msa0420800:CDS
GTTAGTCCTTCAAGCATGAG+AGG 0.621487 3_2:+69556241 Msa0420800:CDS
CATGAGAGGAAAATTTGAAG+AGG 0.626190 3_2:+69556255 Msa0420800:CDS
GATATTGCGAAGAAGACTGA+GGG 0.640825 3_2:+69556788 Msa0420800:intron
TATGATGAATCATAGTTGTG+AGG 0.641745 3_2:+69555562 Msa0420800:CDS
TGATTCATCATATCTGCCCA+AGG 0.643752 3_2:-69555551 None:intergenic
ACTTGTGTAATAGCGAGCGC+AGG 0.651320 3_2:+69556659 Msa0420800:CDS
AGAAGTGAGTATGGTTGACG+AGG 0.657046 3_2:-69553635 None:intergenic
ACGGATCGTCCCTATCAACC+AGG 0.664539 3_2:+69555715 Msa0420800:CDS
TCTTCTGTTGAGTTGTTTCG+GGG 0.672386 3_2:-69556611 None:intergenic
AGATATTGCGAAGAAGACTG+AGG 0.673237 3_2:+69556787 Msa0420800:intron
AAAGGGAATTGTCTTTACGA+CGG 0.683033 3_2:+69555696 Msa0420800:CDS
CTCGCTATTACACAAGTCCA+CGG 0.710247 3_2:-69556653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGAAATTATAGTTTAAA+AGG - chr3_2:69554115-69554134 None:intergenic 10.0%
!! ATGTAAATAATAGTTATAAA+CGG - chr3_2:69554399-69554418 None:intergenic 10.0%
!!! TTCGGTTTTTTTTTTTTTTT+TGG - chr3_2:69554018-69554037 None:intergenic 15.0%
!! ATTTCAATAGAAAAAACTAA+AGG + chr3_2:69554126-69554145 Msa0420800:intron 15.0%
!! TCTAGAAAATTATTAAGATT+TGG + chr3_2:69554715-69554734 Msa0420800:intron 15.0%
!! ATAACATTTCTCATAAAAAA+AGG + chr3_2:69554863-69554882 Msa0420800:intron 15.0%
!! TAACATTTCTCATAAAAAAA+GGG + chr3_2:69554864-69554883 Msa0420800:intron 15.0%
!!! TCTAATATATTTTTTGTCAT+TGG + chr3_2:69555636-69555655 Msa0420800:intron 15.0%
!!! ATTTGTTAAATTAGATACAT+AGG + chr3_2:69555766-69555785 Msa0420800:intron 15.0%
!! TATAATAACTATGAAAACTT+AGG - chr3_2:69556103-69556122 None:intergenic 15.0%
!!! TATTTAATTTCTACTTACAA+AGG + chr3_2:69556723-69556742 Msa0420800:intron 15.0%
!!! ATTATTTTGTGTGTTTGTAT+TGG + chr3_2:69553693-69553712 Msa0420800:intron 20.0%
!!! TTATTTTGTGTGTTTGTATT+GGG + chr3_2:69553694-69553713 Msa0420800:intron 20.0%
!!! TATTTTACAATAATTCACCA+GGG + chr3_2:69553819-69553838 Msa0420800:intron 20.0%
!!! TTATACTTGCTATTTTCTTT+TGG + chr3_2:69554153-69554172 Msa0420800:intron 20.0%
!!! TTTTATTTTATTTTGACCCA+CGG - chr3_2:69554676-69554695 None:intergenic 20.0%
!! AAAAAATCTGCAGAAATATT+AGG - chr3_2:69555038-69555057 None:intergenic 20.0%
!!! AATATTTCTGCAGATTTTTT+AGG + chr3_2:69555038-69555057 Msa0420800:intron 20.0%
!! GAACATATAATTCATGATAT+TGG + chr3_2:69555479-69555498 Msa0420800:intron 20.0%
!!! ATATTTTTTGTCATTGGATT+AGG + chr3_2:69555642-69555661 Msa0420800:intron 20.0%
!! TCATATGGAAAAAAATCAAA+CGG + chr3_2:69555929-69555948 Msa0420800:CDS 20.0%
!! TAATGATTTCAAAAGCAATT+TGG + chr3_2:69556500-69556519 Msa0420800:CDS 20.0%
!! CTATTTTACAATAATTCACC+AGG + chr3_2:69553818-69553837 Msa0420800:intron 25.0%
! TCAATAGAAAAAACTAAAGG+TGG + chr3_2:69554129-69554148 Msa0420800:intron 25.0%
! ATTAAGAGGAAGAAATTAGT+GGG - chr3_2:69554256-69554275 None:intergenic 25.0%
! AATTAAGAGGAAGAAATTAG+TGG - chr3_2:69554257-69554276 None:intergenic 25.0%
! TCAAGCAAAAAAATCTTCAA+TGG + chr3_2:69554283-69554302 Msa0420800:intron 25.0%
! AATCAACAACTATTTGACAA+CGG + chr3_2:69554362-69554381 Msa0420800:intron 25.0%
!!! TTTATTTTATTTTGACCCAC+GGG - chr3_2:69554675-69554694 None:intergenic 25.0%
! AAGATGAAATAGTACCAATA+CGG + chr3_2:69554801-69554820 Msa0420800:intron 25.0%
! ATGTTATGTTGACAACTTTA+TGG - chr3_2:69554850-69554869 None:intergenic 25.0%
! ATGAAAGAAATGAACTGTAT+AGG - chr3_2:69554906-69554925 None:intergenic 25.0%
! GAAAGGACTAATAATGTTAT+TGG + chr3_2:69554989-69555008 Msa0420800:CDS 25.0%
! AATAATGTTATTGGAACGTA+TGG + chr3_2:69554998-69555017 Msa0420800:intron 25.0%
! TGCTAGTTATTGAAAAACAT+GGG - chr3_2:69555125-69555144 None:intergenic 25.0%
! TTGCTAGTTATTGAAAAACA+TGG - chr3_2:69555126-69555145 None:intergenic 25.0%
!! ATCTGAATCTGTTATTTGTA+TGG + chr3_2:69555279-69555298 Msa0420800:intron 25.0%
! GATTATGATAAATCGTCAAA+GGG + chr3_2:69555679-69555698 Msa0420800:CDS 25.0%
! AATTTGCATTTCATTTACCA+AGG - chr3_2:69555808-69555827 None:intergenic 25.0%
! TTTCTTGTATCAAATTACAC+AGG + chr3_2:69555898-69555917 Msa0420800:intron 25.0%
! CATATGGAAAAAAATCAAAC+GGG + chr3_2:69555930-69555949 Msa0420800:CDS 25.0%
! ATATGGAAAAAAATCAAACG+GGG + chr3_2:69555931-69555950 Msa0420800:CDS 25.0%
! TTAGAACTGTTGAAGAAATA+TGG + chr3_2:69556061-69556080 Msa0420800:CDS 25.0%
!! TTGAAGAAATATGGATTATC+AGG + chr3_2:69556070-69556089 Msa0420800:CDS 25.0%
!! TGAAGAAATATGGATTATCA+GGG + chr3_2:69556071-69556090 Msa0420800:CDS 25.0%
! GTAACAAGTTTAATCATGAA+AGG - chr3_2:69556126-69556145 None:intergenic 25.0%
! AAATAAAACTACCTCGAAAA+AGG + chr3_2:69556368-69556387 Msa0420800:CDS 25.0%
! AAAATACAACAAGTTCTTAC+AGG + chr3_2:69556461-69556480 Msa0420800:CDS 25.0%
! AAAGGCTTGAAAATCTTTAA+TGG + chr3_2:69556831-69556850 Msa0420800:CDS 25.0%
! AAGGCTTGAAAATCTTTAAT+GGG + chr3_2:69556832-69556851 Msa0420800:CDS 25.0%
AAAAGAATTCAGTTCCAGAT+TGG + chr3_2:69553534-69553553 Msa0420800:CDS 30.0%
CAGATGGTTCAGTTATATAT+CGG + chr3_2:69553607-69553626 Msa0420800:CDS 30.0%
!!! ATTCACCAGGGTTTTAAAAA+AGG + chr3_2:69553831-69553850 Msa0420800:intron 30.0%
!!! TTTTTTTGGAGTGACATTCA+GGG - chr3_2:69554004-69554023 None:intergenic 30.0%
!!! TTTTTTTTGGAGTGACATTC+AGG - chr3_2:69554005-69554024 None:intergenic 30.0%
AATATAAGCCCATCCTAAAA+TGG + chr3_2:69554045-69554064 Msa0420800:intron 30.0%
!!! CTTTTGTACCATTTTAGGAT+GGG - chr3_2:69554056-69554075 None:intergenic 30.0%
!! ACTTTTGTACCATTTTAGGA+TGG - chr3_2:69554057-69554076 None:intergenic 30.0%
!! CTTCACTTTTGTACCATTTT+AGG - chr3_2:69554061-69554080 None:intergenic 30.0%
TGCTTGAAACTGAAATTAAG+AGG - chr3_2:69554270-69554289 None:intergenic 30.0%
!! AAACTTGTTCTTTTCTATCC+AGG - chr3_2:69554485-69554504 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG + chr3_2:69554539-69554558 Msa0420800:intron 30.0%
CAGTTCATTTCTTTCATTTC+AGG + chr3_2:69554909-69554928 Msa0420800:intron 30.0%
ATTGTATCTGGAGAACAAAT+GGG - chr3_2:69555153-69555172 None:intergenic 30.0%
GTAATTACATCACATTGAAC+AGG + chr3_2:69555224-69555243 Msa0420800:intron 30.0%
TGTTTCATATTTGAGAGAAG+TGG + chr3_2:69555446-69555465 Msa0420800:intron 30.0%
TATGATGAATCATAGTTGTG+AGG + chr3_2:69555562-69555581 Msa0420800:CDS 30.0%
!!! AACTTGCTAGGGATTTTATT+TGG - chr3_2:69555598-69555617 None:intergenic 30.0%
!! TATTAGAGTTCAACTTGTTG+AGG - chr3_2:69555623-69555642 None:intergenic 30.0%
!!! TTTTTTGTCATTGGATTAGG+TGG + chr3_2:69555645-69555664 Msa0420800:intron 30.0%
GGATTATGATAAATCGTCAA+AGG + chr3_2:69555678-69555697 Msa0420800:CDS 30.0%
!! CTTTAGAGTCATAAACACTT+TGG - chr3_2:69555843-69555862 None:intergenic 30.0%
AAGAAATCAATTGCAGTTTG+TGG - chr3_2:69555878-69555897 None:intergenic 30.0%
ACACAGGTGTTTATTTCATA+TGG + chr3_2:69555914-69555933 Msa0420800:intron 30.0%
! ATCATATGGATTTGTTCCAA+AGG + chr3_2:69555964-69555983 Msa0420800:CDS 30.0%
! TGTTTTCCTATAAGGATTAC+TGG + chr3_2:69556181-69556200 Msa0420800:CDS 30.0%
GAATTCACAAAGATAGTAAG+TGG - chr3_2:69556285-69556304 None:intergenic 30.0%
TAACCAAATGTGTGATTCTT+TGG + chr3_2:69556324-69556343 Msa0420800:intron 30.0%
TCAAATGGAAACAAACAACT+AGG - chr3_2:69556549-69556568 None:intergenic 30.0%
!! TGAAAATCTTTAATGGGTTC+TGG + chr3_2:69556838-69556857 Msa0420800:CDS 30.0%
ATAAGGTAAGTTGCAAGCAA+TGG - chr3_2:69553560-69553579 None:intergenic 35.0%
!! TGAGACTAGCTTCACTTATA+AGG - chr3_2:69553577-69553596 None:intergenic 35.0%
CGATATATAACTGAACCATC+TGG - chr3_2:69553609-69553628 None:intergenic 35.0%
AACCATACTCACTTCTTTAC+TGG + chr3_2:69553642-69553661 Msa0420800:CDS 35.0%
TACCAGTAAAGAAGTGAGTA+TGG - chr3_2:69553647-69553666 None:intergenic 35.0%
GTGTTTGTATTGGGAAGAAT+TGG + chr3_2:69553703-69553722 Msa0420800:intron 35.0%
! AAATGCTTTGTTACCTTGCT+AGG + chr3_2:69553768-69553787 Msa0420800:intron 35.0%
! AATGCTTTGTTACCTTGCTA+GGG + chr3_2:69553769-69553788 Msa0420800:intron 35.0%
!!! TCGATCCTTTTTTAAAACCC+TGG - chr3_2:69553839-69553858 None:intergenic 35.0%
AAAAGGATCGAAGTAACAGT+TGG + chr3_2:69553848-69553867 Msa0420800:intron 35.0%
GGGCTTATATTAGTGACATT+CGG - chr3_2:69554036-69554055 None:intergenic 35.0%
TCTTGTACGGATATAGATGA+AGG - chr3_2:69554192-69554211 None:intergenic 35.0%
TTTACATGACTATGAGAGAG+AGG + chr3_2:69554412-69554431 Msa0420800:intron 35.0%
TTACATGACTATGAGAGAGA+GGG + chr3_2:69554413-69554432 Msa0420800:intron 35.0%
AGCGACAAACTTGTGAAAAT+AGG + chr3_2:69554508-69554527 Msa0420800:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG + chr3_2:69554509-69554528 Msa0420800:intron 35.0%
GCGACAAACCTATCAAAATA+AGG + chr3_2:69554538-69554557 Msa0420800:intron 35.0%
ACCTATCAAAATAAGGGTTC+CGG + chr3_2:69554545-69554564 Msa0420800:intron 35.0%
!! GATTTTCTCTCAATTTCTGG+TGG - chr3_2:69554574-69554593 None:intergenic 35.0%
! CGAGATTTTCTCTCAATTTC+TGG - chr3_2:69554577-69554596 None:intergenic 35.0%
TGAAAGAAATAACAAACCCG+TGG + chr3_2:69554656-69554675 Msa0420800:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG + chr3_2:69554657-69554676 Msa0420800:intron 35.0%
!! ATTAGCTGTTTCTCTGATGT+AGG - chr3_2:69554778-69554797 None:intergenic 35.0%
ACCAATACGGTATCTTTAGA+CGG + chr3_2:69554814-69554833 Msa0420800:intron 35.0%
CATTGTATCTGGAGAACAAA+TGG - chr3_2:69555154-69555173 None:intergenic 35.0%
TCTCCAGATACAATGATATG+AGG + chr3_2:69555159-69555178 Msa0420800:intron 35.0%
CTCCAGATACAATGATATGA+GGG + chr3_2:69555160-69555179 Msa0420800:intron 35.0%
AACCCTCATATCATTGTATC+TGG - chr3_2:69555165-69555184 None:intergenic 35.0%
GTGATGTAATTACCTCTTCA+GGG - chr3_2:69555217-69555236 None:intergenic 35.0%
TGTGATGTAATTACCTCTTC+AGG - chr3_2:69555218-69555237 None:intergenic 35.0%
! CTGTTATTTGTATGGCTTTC+AGG + chr3_2:69555287-69555306 Msa0420800:intron 35.0%
TATGGATGGAAAGAATGCAT+TGG + chr3_2:69555526-69555545 Msa0420800:CDS 35.0%
!! AAAGAATGCATTGGTTCCTT+GGG + chr3_2:69555535-69555554 Msa0420800:CDS 35.0%
ATGAATCATAGTTGTGAGGT+AGG + chr3_2:69555566-69555585 Msa0420800:intron 35.0%
TGAATCATAGTTGTGAGGTA+GGG + chr3_2:69555567-69555586 Msa0420800:intron 35.0%
!! TTGTTGAGGAAAACTTGCTA+GGG - chr3_2:69555609-69555628 None:intergenic 35.0%
AAAGGGAATTGTCTTTACGA+CGG + chr3_2:69555696-69555715 Msa0420800:CDS 35.0%
GATAAGACAGTTAAGTACCT+TGG + chr3_2:69555788-69555807 Msa0420800:intron 35.0%
! ATATGGATTTGTTCCAAAGG+AGG + chr3_2:69555967-69555986 Msa0420800:CDS 35.0%
! TATGGATTTGTTCCAAAGGA+GGG + chr3_2:69555968-69555987 Msa0420800:CDS 35.0%
! CAGTTCTAACTTCTCCTTAT+AGG - chr3_2:69556050-69556069 None:intergenic 35.0%
TATAGGAAAACACTGAGATC+TGG - chr3_2:69556173-69556192 None:intergenic 35.0%
! GATCTCAGTGTTTTCCTATA+AGG + chr3_2:69556173-69556192 Msa0420800:intron 35.0%
TTCCTATAAGGATTACTGGT+TGG + chr3_2:69556185-69556204 Msa0420800:CDS 35.0%
! AATTTTCCTCTCATGCTTGA+AGG - chr3_2:69556250-69556269 None:intergenic 35.0%
CATGAGAGGAAAATTTGAAG+AGG + chr3_2:69556255-69556274 Msa0420800:CDS 35.0%
TGTCCAAAGAATCACACATT+TGG - chr3_2:69556330-69556349 None:intergenic 35.0%
!!! CGAGGTAGTTTTATTTGATG+CGG - chr3_2:69556364-69556383 None:intergenic 35.0%
!! ATATCTCAAGTCCTTTTTCG+AGG - chr3_2:69556382-69556401 None:intergenic 35.0%
CTTGAGATATCCTGAAATAG+AGG + chr3_2:69556392-69556411 Msa0420800:CDS 35.0%
! AGTCTTCTGTTGAGTTGTTT+CGG - chr3_2:69556616-69556635 None:intergenic 35.0%
! ATGAGGACTGGTGAATTAAA+AGG + chr3_2:69556813-69556832 Msa0420800:CDS 35.0%
TCAATACTTCACCAGCTTCT+GGG - chr3_2:69553514-69553533 None:intergenic 40.0%
TTCAATACTTCACCAGCTTC+TGG - chr3_2:69553515-69553534 None:intergenic 40.0%
GTCTCATGAAATCTTCCAGA+TGG + chr3_2:69553591-69553610 Msa0420800:CDS 40.0%
CTGCATTCTCTGCAATATCA+AGG - chr3_2:69553886-69553905 None:intergenic 40.0%
CATCTATATCCGTACAAGAG+AGG + chr3_2:69554193-69554212 Msa0420800:intron 40.0%
AGAGAAACACCTCTCTTGTA+CGG - chr3_2:69554205-69554224 None:intergenic 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG - chr3_2:69554549-69554568 None:intergenic 40.0%
!! TCTCAATTTCTGGTGGATTC+CGG - chr3_2:69554567-69554586 None:intergenic 40.0%
! AATGAAAAAGTGTGCCTCCT+AGG + chr3_2:69554610-69554629 Msa0420800:intron 40.0%
AAGCAGAACTTATGTAGCCT+AGG - chr3_2:69554630-69554649 None:intergenic 40.0%
ACCGTCTAAAGATACCGTAT+TGG - chr3_2:69554818-69554837 None:intergenic 40.0%
ACTTGGAAGCTTCACAGATT+AGG + chr3_2:69554954-69554973 Msa0420800:CDS 40.0%
CTTGGAAGCTTCACAGATTA+GGG + chr3_2:69554955-69554974 Msa0420800:CDS 40.0%
TTAGGGAGAGAGCAATTGAA+AGG + chr3_2:69554972-69554991 Msa0420800:CDS 40.0%
! AGGGAAGAAATCAGGGTATT+TGG - chr3_2:69555198-69555217 None:intergenic 40.0%
TCAACATCGAGTCCTTCAAA+TGG + chr3_2:69555313-69555332 Msa0420800:CDS 40.0%
GAGTCCTTCAAATGGTCATT+CGG + chr3_2:69555321-69555340 Msa0420800:CDS 40.0%
AATGCCGAATGACCATTTGA+AGG - chr3_2:69555328-69555347 None:intergenic 40.0%
GCATTCTTTCCATCCATAGA+GGG - chr3_2:69555524-69555543 None:intergenic 40.0%
TGCATTCTTTCCATCCATAG+AGG - chr3_2:69555525-69555544 None:intergenic 40.0%
!! GAAAGAATGCATTGGTTCCT+TGG + chr3_2:69555534-69555553 Msa0420800:CDS 40.0%
TGATTCATCATATCTGCCCA+AGG - chr3_2:69555554-69555573 None:intergenic 40.0%
! CTTGTTGAGGAAAACTTGCT+AGG - chr3_2:69555610-69555629 None:intergenic 40.0%
!!! GGATTAGGTGGAGACTTTTT+TGG + chr3_2:69555657-69555676 Msa0420800:intron 40.0%
CAGGTAATCATAGACTCAGA+TGG + chr3_2:69555742-69555761 Msa0420800:intron 40.0%
GAGTCATAAACACTTTGGCA+AGG - chr3_2:69555838-69555857 None:intergenic 40.0%
GACAACTCAACTGAATCACT+TGG - chr3_2:69556001-69556020 None:intergenic 40.0%
GAAATCCGATGAGTCCTATA+AGG + chr3_2:69556033-69556052 Msa0420800:CDS 40.0%
CTTCTCCTTATAGGACTCAT+CGG - chr3_2:69556041-69556060 None:intergenic 40.0%
GCATAAGCCATTAACTCCAA+TGG - chr3_2:69556211-69556230 None:intergenic 40.0%
TGTGTGATTCTTTGGACAGA+TGG + chr3_2:69556332-69556351 Msa0420800:intron 40.0%
!!! GGTAGTTTTATTTGATGCGG+CGG - chr3_2:69556361-69556380 None:intergenic 40.0%
AATGCTTGCTCCTCTATTTC+AGG - chr3_2:69556405-69556424 None:intergenic 40.0%
ACAACAAGTTCTTACAGGCA+AGG + chr3_2:69556466-69556485 Msa0420800:CDS 40.0%
TTTCCATTTGATCGATCCAC+AGG + chr3_2:69556558-69556577 Msa0420800:intron 40.0%
TTACCTGTGGATCGATCAAA+TGG - chr3_2:69556564-69556583 None:intergenic 40.0%
! TCTTCTGTTGAGTTGTTTCG+GGG - chr3_2:69556614-69556633 None:intergenic 40.0%
! GTCTTCTGTTGAGTTGTTTC+GGG - chr3_2:69556615-69556634 None:intergenic 40.0%
AGATATTGCGAAGAAGACTG+AGG + chr3_2:69556787-69556806 Msa0420800:intron 40.0%
GATATTGCGAAGAAGACTGA+GGG + chr3_2:69556788-69556807 Msa0420800:intron 40.0%
AGAAGTGAGTATGGTTGACG+AGG - chr3_2:69553638-69553657 None:intergenic 45.0%
ATCTCACATTCTCCCTAGCA+AGG - chr3_2:69553784-69553803 None:intergenic 45.0%
GCAGAGAATGCAGTCAAATG+TGG + chr3_2:69553893-69553912 Msa0420800:intron 45.0%
! AAAAGTATGTGACCGCGATC+TGG - chr3_2:69553973-69553992 None:intergenic 45.0%
CAGAACTTATGTAGCCTAGG+AGG - chr3_2:69554627-69554646 None:intergenic 45.0%
!! GCTGTTTCTCTGATGTAGGA+GGG - chr3_2:69554774-69554793 None:intergenic 45.0%
!! AGCTGTTTCTCTGATGTAGG+AGG - chr3_2:69554775-69554794 None:intergenic 45.0%
AGCAGAACTAGATCGCTACT+TGG + chr3_2:69554937-69554956 Msa0420800:CDS 45.0%
CCTCTTCAGGGAAGAAATCA+GGG - chr3_2:69555205-69555224 None:intergenic 45.0%
ACCTCTTCAGGGAAGAAATC+AGG - chr3_2:69555206-69555225 None:intergenic 45.0%
TCATGATATTGGCACCGTGT+AGG + chr3_2:69555490-69555509 Msa0420800:intron 45.0%
ATATTGGCACCGTGTAGGTT+CGG + chr3_2:69555495-69555514 Msa0420800:intron 45.0%
TCTATGATTACCTGCTCACC+TGG - chr3_2:69555736-69555755 None:intergenic 45.0%
GGGGAGCTTCTGTTATCATA+TGG + chr3_2:69555950-69555969 Msa0420800:CDS 45.0%
GGCCAACCAGTAATCCTTAT+AGG - chr3_2:69556190-69556209 None:intergenic 45.0%
! AAGGATTACTGGTTGGCCAT+TGG + chr3_2:69556192-69556211 Msa0420800:CDS 45.0%
! TGGTTGGCCATTGGAGTTAA+TGG + chr3_2:69556201-69556220 Msa0420800:CDS 45.0%
GTTAGTCCTTCAAGCATGAG+AGG + chr3_2:69556241-69556260 Msa0420800:CDS 45.0%
TTGATCGATCCACAGGTAAG+TGG + chr3_2:69556565-69556584 Msa0420800:intron 45.0%
GGTAAGTGGATCGCTAGATT+TGG + chr3_2:69556579-69556598 Msa0420800:intron 45.0%
CTCGCTATTACACAAGTCCA+CGG - chr3_2:69556656-69556675 None:intergenic 45.0%
GAAGAAGACTGAGGGATATG+AGG + chr3_2:69556796-69556815 Msa0420800:CDS 45.0%
GTTGCAAGCAATGGCCAATC+TGG - chr3_2:69553551-69553570 None:intergenic 50.0%
GTCAAATGTGGCCTCAATCG+CGG + chr3_2:69553905-69553924 Msa0420800:intron 50.0%
GCGATCTGGCTGAGACAAAA+CGG - chr3_2:69553959-69553978 None:intergenic 50.0%
! GTTTTGTCTCAGCCAGATCG+CGG + chr3_2:69553958-69553977 Msa0420800:intron 50.0%
GGAGAGAGAATGACGCAGTA+CGG + chr3_2:69554434-69554453 Msa0420800:intron 50.0%
! ATGACGCAGTACGGAAGTGT+AGG + chr3_2:69554443-69554462 Msa0420800:intron 50.0%
! TGACGCAGTACGGAAGTGTA+GGG + chr3_2:69554444-69554463 Msa0420800:intron 50.0%
CCCTGATTTCTTCCCTGAAG+AGG + chr3_2:69555202-69555221 Msa0420800:CDS 50.0%
! ACCTGCTCACCTGGTTGATA+GGG - chr3_2:69555727-69555746 None:intergenic 50.0%
TACCTGCTCACCTGGTTGAT+AGG - chr3_2:69555728-69555747 None:intergenic 50.0%
TCTAGCGATCCACTTACCTG+TGG - chr3_2:69556577-69556596 None:intergenic 50.0%
!! CTTTCTAAAGCAGCTAGCCG+TGG + chr3_2:69556636-69556655 Msa0420800:CDS 50.0%
ACTTGTGTAATAGCGAGCGC+AGG + chr3_2:69556659-69556678 Msa0420800:CDS 50.0%
AGACTGAGGGATATGAGGAC+TGG + chr3_2:69556801-69556820 Msa0420800:CDS 50.0%
! GGGTTAGCAAGCGCTAAACC+TGG + chr3_2:69554464-69554483 Msa0420800:intron 55.0%
! CGGCATTCTTTTCTCGCGCA+TGG + chr3_2:69555341-69555360 Msa0420800:CDS 55.0%
TCGCGCATGGTGAGTCAATC+TGG + chr3_2:69555354-69555373 Msa0420800:intron 55.0%
AGAGGGCAACCGAACCTACA+CGG - chr3_2:69555507-69555526 None:intergenic 55.0%
! GTAGGTTCGGTTGCCCTCTA+TGG + chr3_2:69555508-69555527 Msa0420800:intron 55.0%
GTTCGGTTGCCCTCTATGGA+TGG + chr3_2:69555512-69555531 Msa0420800:CDS 55.0%
ACGGATCGTCCCTATCAACC+AGG + chr3_2:69555715-69555734 Msa0420800:CDS 55.0%
TCCCTATCAACCAGGTGAGC+AGG + chr3_2:69555723-69555742 Msa0420800:CDS 55.0%
CTTGGATTCGTGCCCTCCTT+TGG - chr3_2:69555983-69556002 None:intergenic 55.0%
GAGTGGAGCTGCCCAGAAGC+TGG + chr3_2:69553500-69553519 Msa0420800:CDS 65.0%
GCCTCAATCGCGGTCAGCTG+CGG + chr3_2:69553915-69553934 Msa0420800:intron 65.0%
GCCGCAGCTGACCGCGATTG+AGG - chr3_2:69553919-69553938 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 69553500 69556875 69553500 ID=Msa0420800;Name=Msa0420800
chr3_2 mRNA 69553500 69556875 69553500 ID=Msa0420800-mRNA-1;Parent=Msa0420800;Name=Msa0420800-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0.6|0.45|1|1|1|11|0|393
chr3_2 exon 69553500 69553663 69553500 ID=Msa0420800-mRNA-1:exon:16538;Parent=Msa0420800-mRNA-1
chr3_2 exon 69554931 69555014 69554931 ID=Msa0420800-mRNA-1:exon:16539;Parent=Msa0420800-mRNA-1
chr3_2 exon 69555166 69555223 69555166 ID=Msa0420800-mRNA-1:exon:16540;Parent=Msa0420800-mRNA-1
chr3_2 exon 69555309 69555362 69555309 ID=Msa0420800-mRNA-1:exon:16541;Parent=Msa0420800-mRNA-1
chr3_2 exon 69555512 69555583 69555512 ID=Msa0420800-mRNA-1:exon:16542;Parent=Msa0420800-mRNA-1
chr3_2 exon 69555664 69555744 69555664 ID=Msa0420800-mRNA-1:exon:16543;Parent=Msa0420800-mRNA-1
chr3_2 exon 69555920 69556104 69555920 ID=Msa0420800-mRNA-1:exon:16544;Parent=Msa0420800-mRNA-1
chr3_2 exon 69556174 69556276 69556174 ID=Msa0420800-mRNA-1:exon:16545;Parent=Msa0420800-mRNA-1
chr3_2 exon 69556351 69556521 69556351 ID=Msa0420800-mRNA-1:exon:16546;Parent=Msa0420800-mRNA-1
chr3_2 exon 69556580 69556702 69556580 ID=Msa0420800-mRNA-1:exon:16547;Parent=Msa0420800-mRNA-1
chr3_2 exon 69556789 69556875 69556789 ID=Msa0420800-mRNA-1:exon:16548;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69553500 69553663 69553500 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69554931 69555014 69554931 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69555166 69555223 69555166 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69555309 69555362 69555309 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69555512 69555583 69555512 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69555664 69555744 69555664 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69555920 69556104 69555920 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69556174 69556276 69556174 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69556351 69556521 69556351 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69556580 69556702 69556580 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
chr3_2 CDS 69556789 69556875 69556789 ID=Msa0420800-mRNA-1:cds;Parent=Msa0420800-mRNA-1
Gene Sequence

>Msa0420800

GAGTGGAGCTGCCCAGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTTCCAGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGTCTCATGAAATCTTCCAGATGGTTCAGTTATATATCGGCTTTACCTCGTCAACCATACTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACATACAATGATATGAGGGTTAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCGCGCATGGTTCGGTTGCCCTCTATGGATGGAAAGAATGCATTGGTTCCTTGGGCAGATATGATGAATCATAGTTGTGAGGTGGAGACTTTTTTGGATTATGATAAATCGTCAAAGGGAATTGTCTTTACGACGGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGTGATTCAGTTGAGTTGTCACTGTCACTCAAGAAATCCGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCAGGGCGAGTACCTAAATCTCAGTGTTTTCCTATAAGGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAAAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTTATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAACAAGTTCTTACAGGCAAGGAAACACTTTAATAATGATTTCAAAAGCAATTTGGTAAGTGGATCGCTAGATTTGGATGTGACTTCCCCGAAACAACTCAACAGAAGACTCTTTCTAAAGCAGCTAGCCGTGGACTTGTGTAATAGCGAGCGCAGGATATTGTTTCGTGCTCAATATATATTGCGAAGAAGACTGAGGGATATGAGGACTGGTGAATTAAAAGGCTTGAAAATCTTTAATGGGTTCTGGAATCGTTTCCAATGA

Protein sequence

>Msa0420800

EWSCPEAGEVLKKNSVPDWPLLATYLISEASLMKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTNNVIGTYNDMRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKNALVPWADMMNHSCEVETFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYKEKLELLKKYGLSGRVPKSQCFPIRITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQARKHFNNDFKSNLVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELKGLKIFNGFWNRFQ*