AlfalfaGEDB | Msa0603250

M. sativa cultivar zhongmu-4 / Msa0603250

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603250	XP_013456108.1	95.252	337	12	2	1	336	1	334	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603250	sp\|Q9M2U1\|DOF36_ARATH	38.527	353	138	13	1	324	1	303	1.38e-50	174

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0603250	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0058230	Msa0603250	0.809491	1.843457e-50	-8.615850e-47
Msa0286940	Msa0603250	0.812865	3.419271e-51	-8.615850e-47
Msa0548320	Msa0603250	0.904007	1.923829e-79	-8.615850e-47
Msa0581210	Msa0603250	0.807241	5.563778e-50	-8.615850e-47
Msa0603250	Msa0644270	0.947356	7.888520e-106	-8.615850e-47
Msa0603250	Msa0684070	0.899577	1.726017e-77	-8.615850e-47
Msa0603250	Msa0746230	0.804652	1.948936e-49	-8.615850e-47
Msa0603250	Msa1166040	0.820888	5.407160e-53	-8.615850e-47
Msa0603250	Msa1396330	0.822330	2.510078e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603250	MtrunA17_Chr4g0031411	95.252	337	12	2	1	336	1	334	0.0	585
Msa0603250	MtrunA17_Chr7g0237921	44.144	333	129	10	1	312	1	297	1.28e-61	200
Msa0603250	MtrunA17_Chr2g0328021	38.889	360	124	15	1	336	1	288	3.73e-57	187
Msa0603250	MtrunA17_Chr4g0010151	38.857	350	154	12	1	317	1	323	1.60e-55	185
Msa0603250	MtrunA17_Chr7g0223311	59.028	144	52	4	1	139	1	142	1.45e-46	161
Msa0603250	MtrunA17_Chr5g0411951	87.500	56	7	0	70	125	38	93	9.29e-33	124
Msa0603250	MtrunA17_Chr3g0117601	54.867	113	44	3	48	160	37	142	1.32e-32	124
Msa0603250	MtrunA17_Chr4g0047001	66.667	81	23	1	76	156	56	132	4.71e-32	123
Msa0603250	MtrunA17_Chr2g0326001	80.328	61	12	0	69	129	34	94	1.31e-31	120
Msa0603250	MtrunA17_Chr8g0374251	60.674	89	26	1	75	163	68	147	1.51e-31	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603250	AT3G55370.1	38.527	353	138	13	1	324	1	303	1.40e-51	174
Msa0603250	AT3G55370.2	42.164	268	104	8	1	251	1	234	2.41e-51	174
Msa0603250	AT3G55370.3	39.809	314	118	11	32	324	85	348	7.53e-49	168
Msa0603250	AT1G07640.1	42.308	286	145	10	57	335	3	275	1.39e-48	164
Msa0603250	AT1G07640.2	42.105	285	147	9	57	335	59	331	5.86e-48	164
Msa0603250	AT1G07640.3	42.105	285	147	9	57	335	67	339	9.70e-48	164
Msa0603250	AT2G37590.1	53.846	156	32	2	1	129	1	143	8.72e-47	161
Msa0603250	AT2G28810.1	36.685	368	160	15	1	332	1	331	1.21e-45	159
Msa0603250	AT5G02460.1	88.158	76	9	0	54	129	74	149	5.04e-44	156
Msa0603250	AT2G28810.2	38.776	294	125	11	57	332	58	314	2.14e-42	150

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Find 113 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATCAATTACTAGA+AGG	0.455741	4_2:-47573319	None:intergenic
AAAGAGCATTAAAGGAAGAG+AGG	0.530419	4_2:-47571879	None:intergenic
AAAGGAAGAGAGGAGGGAGG+AGG	0.506532	4_2:-47571869	None:intergenic
AACAACAACAAGATCATATG+GGG	0.646211	4_2:+47572805	Msa0603250:CDS
AACATTGAAGCTGCAGCATC+TGG	0.352153	4_2:+47572999	Msa0603250:CDS
AATACAGAGAAGAGAAAGAA+AGG	0.409902	4_2:-47571905	None:intergenic
AATCTGAGTCGTTATGTCGT+TGG	0.570962	4_2:+47572729	Msa0603250:CDS
AATTCCTAACCTACCCTTCA+TGG	0.365060	4_2:+47572695	Msa0603250:CDS
AATTGCTGCAAATTACGCCA+TGG	0.629104	4_2:-47572909	None:intergenic
AATTTATCAAGAACATCCCT+TGG	0.520144	4_2:+47573098	Msa0603250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGATGAGAGAATGA+GGG	+	chr4_2:47571802-47571821	Msa0603250:five_prime_UTR	30.0%
ATACAGAGAAGAGAAAGAAA+GGG	-	chr4_2:47571907-47571926	None:intergenic	30.0%
AATACAGAGAAGAGAAAGAA+AGG	-	chr4_2:47571908-47571927	None:intergenic	30.0%
TTGAATAGAAGAGAAAACCA+TGG	-	chr4_2:47572009-47572028	None:intergenic	30.0%
GAAGTAGCAAAATTTAGTGT+TGG	-	chr4_2:47572439-47572458	None:intergenic	30.0%
CAATTAGTTCATGATGAGAA+GGG	-	chr4_2:47572656-47572675	None:intergenic	30.0%
ACAACAACAACAAGATCATA+TGG	+	chr4_2:47572803-47572822	Msa0603250:CDS	30.0%
CAACAACAACAAGATCATAT+GGG	+	chr4_2:47572804-47572823	Msa0603250:CDS	30.0%
AACAACAACAAGATCATATG+GGG	+	chr4_2:47572805-47572824	Msa0603250:CDS	30.0%
AGATATAGCTTCAAACTCTA+GGG	+	chr4_2:47573031-47573050	Msa0603250:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	47571716	47573493	47571716	ID=Msa0603250;Name=Msa0603250
chr4_2	mRNA	47571716	47573493	47571716	ID=Msa0603250-mRNA-1;Parent=Msa0603250;Name=Msa0603250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=292\|1\|1\|1\|1\|1\|2\|294\|336
chr4_2	exon	47571716	47572061	47571716	ID=Msa0603250-mRNA-1:exon:10891;Parent=Msa0603250-mRNA-1
chr4_2	exon	47572243	47573493	47572243	ID=Msa0603250-mRNA-1:exon:10892;Parent=Msa0603250-mRNA-1
chr4_2	five_prime_UTR	47571716	47572007	47571716	ID=Msa0603250-mRNA-1:five_prime_utr;Parent=Msa0603250-mRNA-1
chr4_2	CDS	47572008	47572061	47572008	ID=Msa0603250-mRNA-1:cds;Parent=Msa0603250-mRNA-1
chr4_2	CDS	47572243	47573199	47572243	ID=Msa0603250-mRNA-1:cds;Parent=Msa0603250-mRNA-1
chr4_2	three_prime_UTR	47573200	47573493	47573200	ID=Msa0603250-mRNA-1:three_prime_utr;Parent=Msa0603250-mRNA-1

Gene Sequence

>Msa0603250

ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGCAACCAAATCATCAACAAGCAAATGGAAGCAATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTGGTGGCGGTGGTACTATGGGCTCGATCAGACCAGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCAAGAAAAACAAACTTCCCCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTCCTAACCTACCCTTCATGGCCTCGATGCAGAATCTGAGTCGTTATGTCGTTGGAAACGTTAACATGGGACTTGGTTTGCGTGAGATCCAAGAACAACATCAACAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTGCTGTTGCTGGAGGTGTTGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTTGAATCAAACTCTGCTGGAAATAATTCATACACTTTTCATGGAGAAAGTAACATTGAAGCTGCAGCATCTGGATTTGTTGGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAATCGAGCTTTAAATTTATCAAGAACATCCCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGCTCTTCAACTACTCATCTCTTATAA

Protein sequence

>Msa0603250

MVFSSIQGYVDPPNWHHQQPNHQQANGSNNTQLLPPLPPQVGGSTGGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSPSSAIPSHHELIGHQLPQTIPNLPFMASMQNLSRYVVGNVNMGLGLREIQEQHQQQQQQDHMGFQIGIGNGNSTSVSVSASAVAGGVGVEPWRNLQQFPFLNTFESNSAGNNSYTFHGESNIEAAASGFVGDIASNSRANQEPPVKMEENRALNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL*