AlfalfaGEDB | Msa0684070

M. sativa cultivar zhongmu-4 / Msa0684070

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684070	XP_013456108.1	95.252	337	12	2	1	336	1	334	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684070	sp\|Q9M2U1\|DOF36_ARATH	42.164	268	104	8	1	251	1	234	2.22e-50	173

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684070	A0A072UK58	95.252	337	12	2	1	336	1	334	0.0	585

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TFs/TRs:

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Gene ID	Type	Classification
Msa0684070	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0058230	Msa0684070	0.810446	1.147896e-50	-8.615850e-47
Msa0058370	Msa0684070	0.801092	1.059701e-48	-8.615850e-47
Msa0548320	Msa0684070	0.832197	1.084413e-55	-8.615850e-47
Msa0581210	Msa0684070	0.838663	2.516340e-57	-8.615850e-47
Msa0603250	Msa0684070	0.899577	1.726017e-77	-8.615850e-47
Msa0644270	Msa0684070	0.884759	1.457568e-71	-8.615850e-47
Msa0684070	Msa0746230	0.800751	1.244454e-48	-8.615850e-47
Msa0684070	Msa1081830	0.800745	1.247559e-48	-8.615850e-47
Msa0684070	Msa1166040	0.842462	2.547662e-58	-8.615850e-47
Msa0684070	Msa1396330	0.845454	4.020330e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684070	MtrunA17_Chr4g0031411	95.252	337	12	2	1	336	1	334	0.0	585
Msa0684070	MtrunA17_Chr7g0237921	44.144	333	129	10	1	312	1	297	1.64e-61	200
Msa0684070	MtrunA17_Chr2g0328021	38.889	360	124	15	1	336	1	288	4.93e-57	186
Msa0684070	MtrunA17_Chr4g0010151	38.857	350	154	12	1	317	1	323	9.92e-56	185
Msa0684070	MtrunA17_Chr7g0223311	59.028	144	52	4	1	139	1	142	1.44e-46	162
Msa0684070	MtrunA17_Chr5g0411951	87.500	56	7	0	70	125	38	93	9.88e-33	124
Msa0684070	MtrunA17_Chr3g0117601	54.867	113	44	3	48	160	37	142	1.42e-32	124
Msa0684070	MtrunA17_Chr4g0047001	66.667	81	23	1	76	156	56	132	4.76e-32	123
Msa0684070	MtrunA17_Chr2g0326001	80.328	61	12	0	69	129	34	94	1.47e-31	120
Msa0684070	MtrunA17_Chr8g0374251	60.674	89	26	1	75	163	68	147	1.60e-31	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684070	AT3G55370.1	42.164	268	104	8	1	251	1	234	2.26e-51	173
Msa0684070	AT3G55370.2	42.164	268	104	8	1	251	1	234	2.41e-51	174
Msa0684070	AT3G55370.3	39.809	314	118	11	32	324	85	348	1.22e-48	167
Msa0684070	AT1G07640.1	42.308	286	145	10	57	335	3	275	1.77e-48	164
Msa0684070	AT1G07640.2	42.105	285	147	9	57	335	59	331	8.76e-48	164
Msa0684070	AT1G07640.3	42.105	285	147	9	57	335	67	339	9.60e-48	164
Msa0684070	AT2G37590.1	53.846	156	32	2	1	129	1	143	8.91e-47	161
Msa0684070	AT2G28810.1	36.685	368	160	15	1	332	1	331	1.35e-45	159
Msa0684070	AT5G02460.1	88.158	76	9	0	54	129	74	149	4.99e-44	156
Msa0684070	AT2G28810.2	38.776	294	125	11	57	332	58	314	1.68e-42	150

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Find 112 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATCAATTACTAGA+AGG	0.455741	4_4:-47278389	None:intergenic
AAAGAGCATTAAAGGAAGAG+AGG	0.530419	4_4:-47276949	None:intergenic
AAAGGAAGAGAGGAGGGAGG+AGG	0.506532	4_4:-47276939	None:intergenic
AACAACAACAAGATCATATG+GGG	0.646211	4_4:+47277875	Msa0684070:CDS
AACATTGAAGCTGCAGCATC+TGG	0.352153	4_4:+47278069	Msa0684070:CDS
AATACAGAGAAGAGAAAGAA+AGG	0.409902	4_4:-47276975	None:intergenic
AATCTGAGTCGTTATGTCGT+TGG	0.570962	4_4:+47277799	Msa0684070:CDS
AATTCCTAACCTACCCTTCA+TGG	0.365060	4_4:+47277765	Msa0684070:CDS
AATTGCTGCAAATTACGCCA+TGG	0.629104	4_4:-47277979	None:intergenic
AATTTATCAAGAACATCTCT+TGG	0.474556	4_4:+47278168	Msa0684070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGATGAGAGAATGA+GGG	+	chr4_4:47276872-47276891	Msa0684070:five_prime_UTR	30.0%
ATACAGAGAAGAGAAAGAAA+GGG	-	chr4_4:47276977-47276996	None:intergenic	30.0%
AATACAGAGAAGAGAAAGAA+AGG	-	chr4_4:47276978-47276997	None:intergenic	30.0%
TTGAATAGAAGAGAAAACCA+TGG	-	chr4_4:47277079-47277098	None:intergenic	30.0%
GAAGTAGCAAAATTTAGTGT+TGG	-	chr4_4:47277509-47277528	None:intergenic	30.0%
CAATTAGTTCATGATGAGAA+GGG	-	chr4_4:47277726-47277745	None:intergenic	30.0%
ACAACAACAACAAGATCATA+TGG	+	chr4_4:47277873-47277892	Msa0684070:CDS	30.0%
CAACAACAACAAGATCATAT+GGG	+	chr4_4:47277874-47277893	Msa0684070:CDS	30.0%
AACAACAACAAGATCATATG+GGG	+	chr4_4:47277875-47277894	Msa0684070:CDS	30.0%
AGATATAGCTTCAAACTCTA+GGG	+	chr4_4:47278101-47278120	Msa0684070:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	47276786	47278563	47276786	ID=Msa0684070;Name=Msa0684070
chr4_4	mRNA	47276786	47278563	47276786	ID=Msa0684070-mRNA-1;Parent=Msa0684070;Name=Msa0684070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=292\|1\|1\|1\|1\|1\|2\|294\|336
chr4_4	exon	47276786	47277131	47276786	ID=Msa0684070-mRNA-1:exon:11638;Parent=Msa0684070-mRNA-1
chr4_4	exon	47277313	47278563	47277313	ID=Msa0684070-mRNA-1:exon:11639;Parent=Msa0684070-mRNA-1
chr4_4	five_prime_UTR	47276786	47277077	47276786	ID=Msa0684070-mRNA-1:five_prime_utr;Parent=Msa0684070-mRNA-1
chr4_4	CDS	47277078	47277131	47277078	ID=Msa0684070-mRNA-1:cds;Parent=Msa0684070-mRNA-1
chr4_4	CDS	47277313	47278269	47277313	ID=Msa0684070-mRNA-1:cds;Parent=Msa0684070-mRNA-1
chr4_4	three_prime_UTR	47278270	47278563	47278270	ID=Msa0684070-mRNA-1:three_prime_utr;Parent=Msa0684070-mRNA-1

Gene Sequence

>Msa0684070

ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGCAACCAAATCATCAACAAGCAAATGGAAGCAATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTGGTGGCGGTGGTACTATGGGCTCGATCAGACCAGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTTACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCAAGAAAAACAAACTTCCCCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTCCTAACCTACCCTTCATGGCCTCGATGCAGAATCTGAGTCGTTATGTCGTTGGAAACGTTAACATGGGACTTGGTTTGCGTGAGATCCAAGAACAACATCAACAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTGCTGTTGCTGGAGGTGTTGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTTGAATCAAACTCTGATGGAAATAATTCATACACTTTTCATGGAGAAAGTAACATTGAAGCTGCAGCATCTGGATTCGTTGGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAACCGAGCTTTAAATTTATCAAGAACATCTCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGTTCTTCAACTACTCATCTCTTATAA

Protein sequence

>Msa0684070

MVFSSIQGYVDPPNWHHQQPNHQQANGSNNTQLLPPLPPQVGGSTGGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSPSSAIPSHHELIGHQLPQTIPNLPFMASMQNLSRYVVGNVNMGLGLREIQEQHQQQQQQDHMGFQIGIGNGNSTSVSVSASAVAGGVGVEPWRNLQQFPFLNTFESNSDGNNSYTFHGESNIEAAASGFVGDIASNSRANQEPPVKMEENRALNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL*