AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548610 MtrunA17_Chr4g0031951 97.536 893 18 2 1 892 1 890 0.0 1793
Msa0548610 MtrunA17_Chr2g0328561 77.081 925 166 13 1 892 1 912 0.0 1305
Msa0548610 MtrunA17_Chr2g0328561 25.424 177 124 3 689 857 852 1028 6.83e-12 69.7
Msa0548610 MtrunA17_Chr5g0435601 53.261 920 346 29 1 892 9 872 0.0 818
Msa0548610 MtrunA17_Chr1g0199451 42.715 906 402 28 20 892 21 842 0.0 589
Msa0548610 MtrunA17_Chr1g0199451 26.064 188 130 4 678 857 772 958 5.41e-14 76.6
Msa0548610 MtrunA17_Chr2g0298151 36.192 898 468 35 24 892 35 856 1.31e-118 384
Msa0548610 MtrunA17_Chr2g0298151 28.796 191 126 5 678 860 786 974 1.53e-15 81.6
Msa0548610 MtrunA17_Chr5g0425961 31.731 208 134 4 691 892 393 598 6.16e-24 108
Msa0548610 MtrunA17_Chr5g0425961 26.699 206 145 4 691 892 468 671 4.32e-12 70.1
Msa0548610 MtrunA17_Chr2g0279101 31.159 138 90 3 691 823 424 561 2.83e-14 76.6
Msa0548610 MtrunA17_Chr3g0134501 24.638 207 150 4 691 892 209 414 2.90e-14 76.6
Msa0548610 MtrunA17_Chr5g0425331 28.402 169 115 4 724 887 19 186 9.41e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548610 AT2G29190.2 57.206 902 308 21 1 892 1 834 0.0 900
Msa0548610 AT2G29190.2 23.005 213 147 6 691 891 740 947 4.96e-12 70.5
Msa0548610 AT2G29190.2 25.989 177 123 3 689 857 774 950 7.99e-12 70.1
Msa0548610 AT2G29190.1 57.206 902 308 21 1 892 1 834 0.0 900
Msa0548610 AT2G29190.1 23.005 213 147 6 691 891 740 947 4.96e-12 70.5
Msa0548610 AT2G29190.1 25.989 177 123 3 689 857 774 950 7.99e-12 70.1
Msa0548610 AT2G29200.1 57.127 905 300 23 1 892 1 830 0.0 892
Msa0548610 AT2G29200.1 25.989 177 123 3 689 857 770 946 1.94e-13 75.1
Msa0548610 AT2G29200.1 22.010 209 154 4 691 891 736 943 1.33e-12 72.4
Msa0548610 AT2G29200.2 57.127 905 300 23 1 892 1 830 0.0 892
Msa0548610 AT2G29200.2 25.989 177 123 3 689 857 770 946 1.94e-13 75.1
Msa0548610 AT2G29200.2 22.010 209 154 4 691 891 736 943 1.33e-12 72.4
Msa0548610 AT2G29140.2 56.257 903 306 26 1 892 2 826 0.0 861
Msa0548610 AT2G29140.2 25.989 177 123 3 689 857 766 942 2.37e-13 74.7
Msa0548610 AT2G29140.2 21.531 209 155 4 691 891 732 939 1.65e-12 72.0
Msa0548610 AT2G29140.1 56.257 903 306 26 1 892 2 826 0.0 861
Msa0548610 AT2G29140.1 25.989 177 123 3 689 857 766 942 2.37e-13 74.7
Msa0548610 AT2G29140.1 21.531 209 155 4 691 891 732 939 1.65e-12 72.0
Msa0548610 AT3G10360.1 51.289 388 151 11 514 892 506 864 1.13e-108 358
Msa0548610 AT3G10360.1 32.514 366 224 10 20 365 26 388 1.92e-39 158
Msa0548610 AT3G10360.1 27.119 177 121 3 689 857 804 980 2.18e-14 78.2
Msa0548610 AT3G20250.1 46.524 374 170 10 534 892 422 780 4.59e-87 298
Msa0548610 AT3G20250.1 28.511 235 156 6 669 892 625 858 4.43e-19 93.2
Msa0548610 AT3G20250.1 27.273 176 120 3 689 856 720 895 1.10e-15 82.4
Msa0548610 AT3G20250.1 41.026 117 59 3 13 127 23 131 6.90e-15 79.7
Msa0548610 AT3G20250.3 46.524 374 170 10 534 892 458 816 9.12e-87 298
Msa0548610 AT3G20250.3 28.511 235 156 6 669 892 661 894 4.92e-19 93.2
Msa0548610 AT3G20250.3 27.273 176 120 3 689 856 756 931 1.09e-15 82.4
Msa0548610 AT3G20250.3 41.026 117 59 3 13 127 23 131 5.99e-15 80.1
Msa0548610 AT3G20250.2 46.524 374 170 10 534 892 458 816 9.12e-87 298
Msa0548610 AT3G20250.2 28.511 235 156 6 669 892 661 894 4.92e-19 93.2
Msa0548610 AT3G20250.2 27.273 176 120 3 689 856 756 931 1.09e-15 82.4
Msa0548610 AT3G20250.2 41.026 117 59 3 13 127 23 131 5.99e-15 80.1
Msa0548610 AT4G25880.4 44.595 370 158 9 531 892 402 732 5.19e-84 288
Msa0548610 AT4G25880.4 27.119 177 121 3 689 857 672 848 2.17e-13 75.1
Msa0548610 AT4G25880.1 44.595 370 158 9 531 892 402 732 5.73e-84 288
Msa0548610 AT4G25880.1 27.119 177 121 3 689 857 672 848 2.20e-13 74.7
Msa0548610 AT4G25880.5 44.595 370 158 9 531 892 402 732 5.73e-84 288
Msa0548610 AT4G25880.5 27.119 177 121 3 689 857 672 848 2.20e-13 74.7
Msa0548610 AT4G25880.3 43.243 370 157 10 531 892 402 726 4.50e-78 271
Msa0548610 AT4G25880.3 27.119 177 121 3 689 857 666 842 2.05e-13 75.1
Msa0548610 AT4G25880.2 43.243 370 157 10 531 892 402 726 5.13e-78 271
Msa0548610 AT4G25880.2 27.119 177 121 3 689 857 666 842 2.35e-13 74.7
Msa0548610 AT1G22240.1 31.731 208 136 3 690 892 195 401 5.28e-29 122
Msa0548610 AT1G22240.1 24.378 201 146 4 696 892 276 474 2.47e-13 73.9
Msa0548610 AT1G78160.2 30.435 207 138 4 691 892 333 538 3.26e-26 115
Msa0548610 AT1G78160.2 24.519 208 145 5 692 892 409 611 8.81e-13 72.8
Msa0548610 AT1G78160.1 30.435 207 138 4 691 892 331 536 3.38e-26 115
Msa0548610 AT1G78160.1 24.519 208 145 5 692 892 407 609 8.57e-13 72.8
Msa0548610 AT1G35730.1 31.401 207 136 4 691 892 247 452 4.10e-21 99.0
Msa0548610 AT1G35730.2 31.401 207 136 4 691 892 253 458 4.40e-21 99.0
Msa0548610 AT5G56510.4 28.019 207 143 4 691 892 275 480 1.06e-20 97.8
Msa0548610 AT5G56510.6 28.019 207 143 4 691 892 275 480 1.06e-20 97.8
Msa0548610 AT5G56510.2 28.019 207 143 4 691 892 275 480 1.06e-20 97.8
Msa0548610 AT5G56510.1 28.019 207 143 4 691 892 275 480 1.06e-20 97.8
Msa0548610 AT5G56510.3 28.019 207 143 4 691 892 275 480 1.06e-20 97.8
Msa0548610 AT5G56510.5 28.019 207 143 4 691 892 275 480 1.40e-20 97.4
Msa0548610 AT4G08840.1 29.493 217 144 5 684 892 229 444 1.03e-19 94.4
Msa0548610 AT4G08840.1 26.415 212 136 7 691 892 314 515 5.45e-14 76.3
Msa0548610 AT1G35750.1 33.962 212 124 6 691 892 211 416 9.44e-19 91.3

Find 258 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTAAAATTAAAATTT+TGG 0.042100 4_1:+42853441 Msa0548610:five_prime_UTR
AATTCATCATTCACTAATTA+TGG 0.174717 4_1:+42856429 Msa0548610:CDS
TTTAGGTTGTTTCTGTTATT+AGG 0.204772 4_1:+42853813 Msa0548610:five_prime_UTR
TATTACCTCCTCCACTAAAA+TGG 0.211836 4_1:-42856374 None:intergenic
TGTTTGCTAATTCTCTTCTC+TGG 0.222652 4_1:-42857521 None:intergenic
TTCAGATCATTGTGCCTAAT+TGG 0.235538 4_1:-42856999 None:intergenic
ATAACTTTCTGCTGTGTTGC+AGG 0.238709 4_1:-42858045 None:intergenic
GAATTAGCAAACAAGCTTAT+TGG 0.240600 4_1:+42857531 Msa0548610:CDS
TTAGGTTGTTTCTGTTATTA+GGG 0.246924 4_1:+42853814 Msa0548610:five_prime_UTR
CTTGGAGGTGGTTTGGCTTC+GGG 0.253219 4_1:+42856591 Msa0548610:CDS
CCGGACATGTTGTTGAATTC+AGG 0.255779 4_1:+42857174 Msa0548610:CDS
GAGTTTGCCATTGGACTTCC+TGG 0.265657 4_1:-42856951 None:intergenic
AAAGAGAGTTGAATATATTT+AGG 0.269459 4_1:+42854042 Msa0548610:CDS
AATTGCTGGTGGTGCTCTTC+AGG 0.270283 4_1:+42856662 Msa0548610:CDS
GGCAATAACGAGGGTTGTTT+TGG 0.271807 4_1:+42853951 Msa0548610:CDS
GATCTTGTGGCTGCTTTATC+CGG 0.292605 4_1:+42856084 Msa0548610:CDS
TGGGGTGGTGATGGTTTGAT+TGG 0.296056 4_1:+42854482 Msa0548610:CDS
GGTGGTTTGGCTTCGGGAGC+TGG 0.301964 4_1:+42856597 Msa0548610:CDS
TCCAATCACCATGGTTACTA+TGG 0.303912 4_1:+42856897 Msa0548610:CDS
GTCAGTCCTGATTCATTTAA+CGG 0.304720 4_1:+42856033 Msa0548610:CDS
GGGTTGTTTGGTGGCGGTGG+TGG 0.308233 4_1:+42854113 Msa0548610:CDS
TCTTGGAGGTGGTTTGGCTT+CGG 0.314631 4_1:+42856590 Msa0548610:CDS
TTGTTTGGTGGCGGTGGTGG+TGG 0.318004 4_1:+42854116 Msa0548610:CDS
GCATGTAGATTCCGGGAATA+TGG 0.319387 4_1:+42857076 Msa0548610:CDS
CAAGCTTCTGTTGAATAAAT+CGG 0.320765 4_1:-42857300 None:intergenic
AGGTTTCAACAAAGGCTTAA+AGG 0.320928 4_1:+42854302 Msa0548610:CDS
AAACATCGGTGGCAGATTAC+TGG 0.323803 4_1:-42856514 None:intergenic
GATGAATTGGAGAAGGAAAT+AGG 0.331130 4_1:+42853975 Msa0548610:CDS
TTGGTTCTTGCAAGAACCTT+AGG 0.336788 4_1:-42853545 None:intergenic
ATAAAGTCGATCGCATCTTC+AGG 0.338577 4_1:-42857841 None:intergenic
AATTATGGCTTAAGCGGTTA+TGG 0.338972 4_1:+42856444 Msa0548610:CDS
GCCTCAGCTGTAGGTGGAAT+TGG 0.339799 4_1:+42854329 Msa0548610:CDS
CTTTGTTGTCAAAGGAAGAT+TGG 0.348632 4_1:+42854279 Msa0548610:CDS
GGAATGGACTCGAGAATTCT+TGG 0.352909 4_1:+42856573 Msa0548610:CDS
TCATCTGCAACACAAAATAT+TGG 0.355905 4_1:+42855856 Msa0548610:CDS
CCTTCTGATGTGCATAATCT+TGG 0.356676 4_1:+42856624 Msa0548610:CDS
TTTGAGCTCTCTGAAATTGC+CGG 0.357733 4_1:+42857155 Msa0548610:CDS
GGCCATTGAAGTTGTTGATC+TGG 0.361624 4_1:+42857717 Msa0548610:intron
GTAGCTCAGCCTGCCTGTGC+AGG 0.363181 4_1:-42856299 None:intergenic
GTTTGCTAATTCTCTTCTCT+GGG 0.363844 4_1:-42857520 None:intergenic
CAAATGTGAATTTGAATCCT+AGG 0.365913 4_1:+42854246 Msa0548610:CDS
AATGCTGTTGGAGGGTTGTT+TGG 0.366722 4_1:+42854101 Msa0548610:CDS
AGAATTCTCGAGTCCATTCC+AGG 0.367598 4_1:-42856570 None:intergenic
TTTGGTGGCGGTGGTGGTGG+TGG 0.370104 4_1:+42854119 Msa0548610:CDS
GTATGGCAACTACGTTGTTC+AGG 0.371359 4_1:+42858110 Msa0548610:CDS
TCATTTAACGGTGTTTCATC+TGG 0.372687 4_1:+42856045 Msa0548610:CDS
GCACAACTTGGTGGTAAATC+AGG 0.373213 4_1:+42856870 Msa0548610:CDS
GCAGATTACTGGTGCCATAT+TGG 0.375025 4_1:-42856503 None:intergenic
GGAGGGTTGTTTGGTGGCGG+TGG 0.375334 4_1:+42854110 Msa0548610:CDS
GACCAGAGGTTCTGCTGAAT+GGG 0.378452 4_1:+42854463 Msa0548610:CDS
GAGAATTCTTGGAGGTGGTT+TGG 0.380907 4_1:+42856584 Msa0548610:CDS
TTTAAGAATGTTGTCTGAGT+TGG 0.383851 4_1:+42853911 Msa0548610:exon
TCAGGGCATTTGCAAAGTTC+AGG 0.390626 4_1:+42856246 Msa0548610:CDS
TCGAATGCATTACGACTTGC+TGG 0.393224 4_1:-42855778 None:intergenic
CTCTGTGGACAGGAACTACT+TGG 0.395612 4_1:+42856767 Msa0548610:CDS
GGACCTTGGCATGTAGATTC+CGG 0.398933 4_1:+42857068 Msa0548610:CDS
TTGATTGGTTTGCCTAGCTT+GGG 0.399163 4_1:+42854497 Msa0548610:CDS
TCCTTGATGACTAACCAATA+TGG 0.400215 4_1:+42856489 Msa0548610:CDS
GCCTTCAGATGTATGGCTGC+CGG 0.407048 4_1:+42857571 Msa0548610:CDS
GTTGGCAGTGCCGATCAATA+TGG 0.408770 4_1:+42857274 Msa0548610:intron
CTTCTTGCCTCCGTTGTTCG+CGG 0.408795 4_1:-42854007 None:intergenic
TTTGATTGGTTTGCCTAGCT+TGG 0.410527 4_1:+42854496 Msa0548610:CDS
GACCTTGGCATGTAGATTCC+GGG 0.412369 4_1:+42857069 Msa0548610:CDS
TGTGCAGGGACAGATTATTA+AGG 0.414026 4_1:-42856284 None:intergenic
GAAACACCGTTAAATGAATC+AGG 0.419727 4_1:-42856039 None:intergenic
GCTTTGATGACCGATGTCTT+TGG 0.420200 4_1:+42857382 Msa0548610:CDS
ACATTTCTCCCTCCGCCAAT+AGG 0.420859 4_1:-42855988 None:intergenic
AGTCCATGTCTCACACCTAT+TGG 0.422924 4_1:+42855973 Msa0548610:CDS
ACACTTAGCCTTCAGATGTA+TGG 0.423143 4_1:+42857564 Msa0548610:CDS
GCTCAATATCAGTCTATAGA+TGG 0.428519 4_1:+42856402 Msa0548610:CDS
AAAGCTTTCATCCATATTCC+CGG 0.428951 4_1:-42857087 None:intergenic
TCCATAGTAACCATGGTGAT+TGG 0.434174 4_1:-42856898 None:intergenic
AGACCAGAGGTTCTGCTGAA+TGG 0.434949 4_1:+42854462 Msa0548610:CDS
CGGGAAGGAAGGCCTGTGAC+GGG 0.435937 4_1:-42855754 None:intergenic
TTAAGAATGTTGTCTGAGTT+GGG 0.438319 4_1:+42853912 Msa0548610:exon
ATTGTGCCTAATTGGACTTC+CGG 0.440448 4_1:-42856991 None:intergenic
AAGCTTTGCTTCTTCTCTGT+TGG 0.443609 4_1:+42857103 Msa0548610:CDS
CTTGCAATATGTTGTGGATC+AGG 0.445916 4_1:-42855943 None:intergenic
GGGAAGGAAGGCCTGTGACG+GGG 0.448925 4_1:-42855753 None:intergenic
TCTGCTGAATGGGGTGGTGA+TGG 0.451024 4_1:+42854473 Msa0548610:CDS
GCAGAGTTCGCTCATGTTCA+AGG 0.453542 4_1:+42855832 Msa0548610:CDS
GGTGTTGGGTTGTCTTATCC+AGG 0.455102 4_1:+42856933 Msa0548610:CDS
TACTATGGAAATCCGGCATA+TGG 0.455469 4_1:+42856912 Msa0548610:CDS
GTATTTATAATCCTCATAGA+TGG 0.455914 4_1:+42853514 Msa0548610:five_prime_UTR
ATTGGACTTCCGGATCCAAC+TGG 0.456227 4_1:-42856981 None:intergenic
CGCTGTTAGCATGCTAGCAC+AGG 0.456310 4_1:+42858083 Msa0548610:CDS
ATTACCTCCTCCACTAAAAT+GGG 0.458674 4_1:-42856373 None:intergenic
ATACGGTTGTCGTGTGATAC+AGG 0.460160 4_1:+42857909 Msa0548610:CDS
CTGTAGGTGGAATTGGAGAT+AGG 0.461781 4_1:+42854336 Msa0548610:CDS
GAGGGTTCTTCTAATGCTGT+TGG 0.463560 4_1:+42854089 Msa0548610:CDS
GGTTCTTCTAATGCTGTTGG+AGG 0.464933 4_1:+42854092 Msa0548610:CDS
TAACTTTCTGCTGTGTTGCA+GGG 0.468153 4_1:-42858044 None:intergenic
TCTGGTTCTCCAGTTGGATC+CGG 0.471107 4_1:+42856972 Msa0548610:CDS
CGGATGGGAAATCAAATTGC+TGG 0.471590 4_1:+42856648 Msa0548610:CDS
ACCCCATTCAGCAGAACCTC+TGG 0.473320 4_1:-42854465 None:intergenic
ATCTTGTGGCTGCTTTATCC+GGG 0.475055 4_1:+42856085 Msa0548610:CDS
CCTTCAGATGTATGGCTGCC+GGG 0.475358 4_1:+42857572 Msa0548610:CDS
TTGTTTCTGAGGAAGAGCTT+AGG 0.476657 4_1:+42854192 Msa0548610:CDS
TTCAGAGAGCTCAAAACACT+TGG 0.477769 4_1:-42857147 None:intergenic
TCCACCTCCTTTGTTGTCAA+AGG 0.478104 4_1:+42854271 Msa0548610:CDS
TATTCTTATGCTGCTGCACT+AGG 0.479040 4_1:+42855892 Msa0548610:CDS
TTGAAATATGAGTTATTCAA+AGG 0.480789 4_1:-42856336 None:intergenic
TTAACTTTAGGAAGCAAGAA+AGG 0.482450 4_1:+42854420 Msa0548610:CDS
CTGGAATGAGGAACTTAGCT+GGG 0.483970 4_1:+42857039 Msa0548610:CDS
TTGGATCCGGAAGTCCAATT+AGG 0.484418 4_1:+42856985 Msa0548610:CDS
ACTCAACCTGTGATGGCAAA+TGG 0.486010 4_1:-42856134 None:intergenic
TTGAATAACTCATATTTCAA+AGG 0.487092 4_1:+42856339 Msa0548610:CDS
TGCATTACGACTTGCTGGAC+GGG 0.489902 4_1:-42855773 None:intergenic
TGGTTCTTGCAAGAACCTTA+GGG 0.489919 4_1:-42853544 None:intergenic
TCCTTTGACAACAAAGGAGG+TGG 0.490018 4_1:-42854272 None:intergenic
ATCAAGGATGTCAATGCTGC+AGG 0.490069 4_1:-42856474 None:intergenic
TAATAGTATTGAAGATAAGC+TGG 0.491222 4_1:-42854221 None:intergenic
CCATGGTTACTATGGAAATC+CGG 0.492697 4_1:+42856905 Msa0548610:CDS
CATTCCAGGGGATGCCATCA+TGG 0.493072 4_1:-42856556 None:intergenic
TGAAAACCATTTGCCATCAC+AGG 0.494917 4_1:+42856128 Msa0548610:CDS
GACTCGAGAATTCTTGGAGG+TGG 0.500582 4_1:+42856579 Msa0548610:CDS
GAGGAACTTAGCTGGGGTCA+TGG 0.500851 4_1:+42857046 Msa0548610:CDS
GGAAATCCGGCATATGGTGT+TGG 0.501027 4_1:+42856918 Msa0548610:CDS
AATTTGAAGCTGGCGGCGAT+TGG 0.502181 4_1:-42853564 None:intergenic
GTTGGAGGGTTGTTTGGTGG+CGG 0.503596 4_1:+42854107 Msa0548610:CDS
ATGCTAGCACAGGATCAGTA+TGG 0.504399 4_1:+42858093 Msa0548610:CDS
CGATGTATCTTCAGTATATG+AGG 0.505726 4_1:+42856700 Msa0548610:CDS
AAAGGTGGGGCCTCAGCTGT+AGG 0.506111 4_1:+42854320 Msa0548610:CDS
GCCATATTGGTTAGTCATCA+AGG 0.506645 4_1:-42856490 None:intergenic
CCATTCACATCTTTATTCCC+AGG 0.507605 4_1:-42854167 None:intergenic
TCACACGACAACCGTATGGA+TGG 0.509025 4_1:-42857903 None:intergenic
GCAAACTCTGGTTCTCCAGT+TGG 0.509396 4_1:+42856966 Msa0548610:CDS
GCATCCATGATGGCATCCCC+TGG 0.510554 4_1:+42856552 Msa0548610:CDS
AGGAACTTAGCTGGGGTCAT+GGG 0.510621 4_1:+42857047 Msa0548610:CDS
AGCTGCAGAAAGCCTACCTC+GGG 0.513740 4_1:+42856814 Msa0548610:CDS
ATCCAGATCAACAACTTCAA+TGG 0.514559 4_1:-42857719 None:intergenic
ACGGGAAGGAAGGCCTGTGA+CGG 0.515589 4_1:-42855755 None:intergenic
GCTGTTGGAGGGTTGTTTGG+TGG 0.517814 4_1:+42854104 Msa0548610:CDS
TGCAAAGTTCAGGTAAGAGC+AGG 0.518255 4_1:+42856256 Msa0548610:CDS
TTAATAATCTGTCCCTGCAC+AGG 0.518328 4_1:+42856286 Msa0548610:CDS
CATGATGGCATCCCCTGGAA+TGG 0.518574 4_1:+42856557 Msa0548610:CDS
TAGCTCAGCCTGCCTGTGCA+GGG 0.519401 4_1:-42856298 None:intergenic
CGCGAACAACGGAGGCAAGA+AGG 0.519552 4_1:+42854008 Msa0548610:CDS
TTCAACAAAGGCTTAAAGGT+GGG 0.519587 4_1:+42854306 Msa0548610:CDS
GGAAGGAAGGCCTGTGACGG+GGG 0.521269 4_1:-42855752 None:intergenic
GACTTGCTGGACGGGAAGGA+AGG 0.525155 4_1:-42855765 None:intergenic
TGCAACACAGCAGAAAGTTA+TGG 0.525725 4_1:+42858047 Msa0548610:CDS
ATGCATTACGACTTGCTGGA+CGG 0.534318 4_1:-42855774 None:intergenic
CGGATCAGCTCCTCCTACTG+TGG 0.534884 4_1:+42854067 Msa0548610:CDS
TTCACTAATTATGGCTTAAG+CGG 0.535144 4_1:+42856438 Msa0548610:CDS
GGAGAACCAGAGTTTGCCAT+TGG 0.537229 4_1:-42856960 None:intergenic
CCTGAATTCAACAACATGTC+CGG 0.537327 4_1:-42857174 None:intergenic
TTGGGAAGAAGACCAGTGAT+TGG 0.538163 4_1:+42853930 Msa0548610:CDS
TCTGGAATGAGGAACTTAGC+TGG 0.538248 4_1:+42857038 Msa0548610:CDS
CGTTGCCGCTGCATCCATGA+TGG 0.538440 4_1:+42856542 Msa0548610:CDS
TTAACGACCCCTCTGTGGAC+AGG 0.539471 4_1:+42856757 Msa0548610:CDS
GAAATCCGGCATATGGTGTT+GGG 0.539712 4_1:+42856919 Msa0548610:CDS
TAATCTGTCCCTGCACAGGC+AGG 0.539929 4_1:+42856290 Msa0548610:CDS
AACAAAGGAGGTGGAAGCCT+AGG 0.542530 4_1:-42854263 None:intergenic
GGTGGTGGTGGTGTTGCTGG+TGG 0.542676 4_1:+42854131 Msa0548610:CDS
GAGATGGTTAAAGAGCTTGA+TGG 0.544811 4_1:+42857751 Msa0548610:CDS
CCTGGGAATAAAGATGTGAA+TGG 0.545695 4_1:+42854167 Msa0548610:CDS
TAGCTGGGGTCATGGGACCT+TGG 0.546671 4_1:+42857054 Msa0548610:CDS
TGTTGTCAAAGGAAGATTGG+AGG 0.547757 4_1:+42854282 Msa0548610:CDS
GAAGCAAGAAAGGAGTGAGG+TGG 0.548502 4_1:+42854430 Msa0548610:CDS
CCCTCGTTATTGCCAATCAC+TGG 0.550459 4_1:-42853942 None:intergenic
GGAATTGGAGATAGGAGGAA+AGG 0.551298 4_1:+42854344 Msa0548610:CDS
ATCAGCTCCTCCTACTGTGG+AGG 0.551480 4_1:+42854070 Msa0548610:CDS
GTTCTTCTAATGCTGTTGGA+GGG 0.552482 4_1:+42854093 Msa0548610:CDS
TCACAGTACAATGCACAACT+TGG 0.552843 4_1:+42856858 Msa0548610:CDS
AGGAGAGAGGAATTTGAAGC+TGG 0.555109 4_1:-42853574 None:intergenic
GAAGAACCCTCCACAGTAGG+AGG 0.555189 4_1:-42854077 None:intergenic
CAATCTTCCTTTGACAACAA+AGG 0.558768 4_1:-42854278 None:intergenic
GCAGCATAAGAATATGAAGC+TGG 0.563611 4_1:-42855883 None:intergenic
TAAAGTCGATCGCATCTTCA+GGG 0.565024 4_1:-42857840 None:intergenic
TTGCTTCTAAGTCCCAAGCT+AGG 0.565095 4_1:-42854509 None:intergenic
CCATGTCTCACACCTATTGG+CGG 0.568595 4_1:+42855976 Msa0548610:CDS
TTCCCGGAATCTACATGCCA+AGG 0.568700 4_1:-42857071 None:intergenic
AAGATTGGAGGTTTCAACAA+AGG 0.569404 4_1:+42854294 Msa0548610:CDS
TCAACAAAGGCTTAAAGGTG+GGG 0.569868 4_1:+42854307 Msa0548610:CDS
CTGATCCACAACATATTGCA+AGG 0.570840 4_1:+42855944 Msa0548610:CDS
ACTGATTGTGACAAAAGTTG+AGG 0.571111 4_1:-42853625 None:intergenic
CCCGGCAGCCATACATCTGA+AGG 0.571963 4_1:-42857572 None:intergenic
GGAAGTCCAATGGCAAACTC+TGG 0.573092 4_1:+42856954 Msa0548610:CDS
TGTCTCACACCTATTGGCGG+AGG 0.573681 4_1:+42855979 Msa0548610:CDS
TTCTGCTGACAAGTTCATCC+CGG 0.574635 4_1:-42856103 None:intergenic
CAGTACAATGCACAACTTGG+TGG 0.574796 4_1:+42856861 Msa0548610:CDS
GACAACCCAACACCATATGC+CGG 0.575951 4_1:-42856924 None:intergenic
AAGTAGTTCCTGTCCACAGA+GGG 0.576360 4_1:-42856765 None:intergenic
TGTATCACACGACAACCGTA+TGG 0.576443 4_1:-42857907 None:intergenic
AGATACATCGGATCAACAAA+CGG 0.577913 4_1:-42856687 None:intergenic
GGATGCCATCATGGATGCAG+CGG 0.578490 4_1:-42856547 None:intergenic
GGAGCCCTTGCAATATGTTG+TGG 0.578921 4_1:-42855949 None:intergenic
ACAAAAGTTGAGGTTAAGAA+TGG 0.579050 4_1:-42853615 None:intergenic
AAATCGGCTTCCATATTGAT+CGG 0.582623 4_1:-42857284 None:intergenic
TCTTATGCTGCTGCACTAGG+AGG 0.584290 4_1:+42855895 Msa0548610:CDS
TGCTTCCTAAAGTTAAAACC+AGG 0.584967 4_1:-42854413 None:intergenic
ACATCAGACTCAACCTGTGA+TGG 0.587173 4_1:-42856141 None:intergenic
TGGCTGCCGGGTTATTCAGA+AGG 0.588197 4_1:+42857584 Msa0548610:CDS
GAGCTGCAGAAAGCCTACCT+CGG 0.589123 4_1:+42856813 Msa0548610:CDS
TATGGCTTAAGCGGTTATGG+TGG 0.589443 4_1:+42856447 Msa0548610:CDS
TTACGACTTGCTGGACGGGA+AGG 0.592541 4_1:-42855769 None:intergenic
TCAGCTCCTCCTACTGTGGA+GGG 0.593400 4_1:+42854071 Msa0548610:CDS
CTCATATACTGAAGATACAT+CGG 0.593584 4_1:-42856699 None:intergenic
CTGATGTGCATAATCTTGGT+CGG 0.593961 4_1:+42856628 Msa0548610:CDS
GAATGTTGCTCCGCGAACAA+CGG 0.594205 4_1:+42853997 Msa0548610:CDS
TGTGAATGGTGTTGTTTCTG+AGG 0.595945 4_1:+42854181 Msa0548610:CDS
CACACGACAACCGTATGGAT+GGG 0.596629 4_1:-42857902 None:intergenic
ATAGATGGAACAAAACCCTA+AGG 0.596696 4_1:+42853529 Msa0548610:five_prime_UTR
TTAGAAGAACCCTCCACAGT+AGG 0.597916 4_1:-42854080 None:intergenic
GAACGAGTCAGCAGATCTTG+TGG 0.598330 4_1:+42856071 Msa0548610:CDS
CCAAGATTATGCACATCAGA+AGG 0.600055 4_1:-42856624 None:intergenic
GGTGGGGCCTCAGCTGTAGG+TGG 0.603539 4_1:+42854323 Msa0548610:CDS
CGAGAGAACAGACCCGAGGT+AGG 0.604952 4_1:-42856826 None:intergenic
GAATTCTCGAGTCCATTCCA+GGG 0.606282 4_1:-42856569 None:intergenic
CCGCCAATAGGTGTGAGACA+TGG 0.607911 4_1:-42855976 None:intergenic
AGAGAGGAATTTGAAGCTGG+CGG 0.608775 4_1:-42853571 None:intergenic
ATGGACTCGAGAATTCTTGG+AGG 0.608966 4_1:+42856576 Msa0548610:CDS
ATAGGTGTGAGACATGGACT+AGG 0.610983 4_1:-42855970 None:intergenic
GTGCATAATCTTGGTCGGAT+GGG 0.611291 4_1:+42856633 Msa0548610:CDS
ATGCAGGGTGGTCAAGAGCA+CGG 0.614674 4_1:+42856192 Msa0548610:CDS
GTCATCAAAGCAAGAGCATG+TGG 0.615784 4_1:-42857370 None:intergenic
ACCAGTGATTGGCAATAACG+AGG 0.616587 4_1:+42853941 Msa0548610:CDS
GTCTCACACCTATTGGCGGA+GGG 0.618213 4_1:+42855980 Msa0548610:CDS
ACACTCTCAACCCATCCATA+CGG 0.618697 4_1:+42857892 Msa0548610:CDS
TCCAATTCCACCTACAGCTG+AGG 0.621356 4_1:-42854330 None:intergenic
GTCTTATCCAGGAAGTCCAA+TGG 0.621556 4_1:+42856944 Msa0548610:CDS
CCGGATTTCCATAGTAACCA+TGG 0.622461 4_1:-42856905 None:intergenic
CCTCCACTAAAATGGGAGGT+AGG 0.624243 4_1:-42856366 None:intergenic
TTTGCTAATTCTCTTCTCTG+GGG 0.624320 4_1:-42857519 None:intergenic
TGTGCATAATCTTGGTCGGA+TGG 0.625548 4_1:+42856632 Msa0548610:CDS
TAGGTGGAATTGGAGATAGG+AGG 0.626161 4_1:+42854339 Msa0548610:CDS
CGTTGTGTTCGTGATCAGAA+TGG 0.627328 4_1:+42857784 Msa0548610:CDS
GGTAACATGACTGATGATAG+TGG 0.627522 4_1:+42854365 Msa0548610:CDS
TGATCCACAACATATTGCAA+GGG 0.637872 4_1:+42855945 Msa0548610:CDS
AATGTCTCTTCTGACAAGAG+AGG 0.640214 4_1:+42856006 Msa0548610:CDS
CACATAATTACCAAAGACAT+CGG 0.640601 4_1:-42857392 None:intergenic
ACCAGAGGTTCTGCTGAATG+GGG 0.641423 4_1:+42854464 Msa0548610:CDS
TTTCAACAAAGGCTTAAAGG+TGG 0.643542 4_1:+42854305 Msa0548610:CDS
TGTTGCTCCGCGAACAACGG+AGG 0.644937 4_1:+42854000 Msa0548610:CDS
TCTTCCTTTGACAACAAAGG+AGG 0.647413 4_1:-42854275 None:intergenic
ACCTCCTCCACTAAAATGGG+AGG 0.649721 4_1:-42856370 None:intergenic
TGCTCTTAACGACCCCTCTG+TGG 0.649843 4_1:+42856752 Msa0548610:CDS
CCAGTGATTGGCAATAACGA+GGG 0.651439 4_1:+42853942 Msa0548610:CDS
TCTGGATCAGAAAATAGAGA+TGG 0.657851 4_1:+42857735 Msa0548610:CDS
GAGTTGAATATATTTAGGAG+CGG 0.659139 4_1:+42854047 Msa0548610:CDS
TCAATACCTTCTGAATAACC+CGG 0.659462 4_1:-42857590 None:intergenic
TCTGTGGACAGGAACTACTT+GGG 0.660127 4_1:+42856768 Msa0548610:CDS
AAAGCAATCAATAATTAACA+AGG 0.662281 4_1:-42853666 None:intergenic
GAAGGCTAAGTGTAAGAACA+TGG 0.665988 4_1:-42857554 None:intergenic
GAGGCGAGAGAACAGACCCG+AGG 0.669263 4_1:-42856830 None:intergenic
TTCCTAAAGTTAAAACCAGG+TGG 0.674057 4_1:-42854410 None:intergenic
TGGAATGAGGAACTTAGCTG+GGG 0.676254 4_1:+42857040 Msa0548610:CDS
AGAGGTTCTGCTGAATGGGG+TGG 0.677430 4_1:+42854467 Msa0548610:CDS
TGACTGATGATAGTGGTGCT+AGG 0.680122 4_1:+42854372 Msa0548610:CDS
TAGGAAGCAAGAAAGGAGTG+AGG 0.692795 4_1:+42854427 Msa0548610:CDS
TCAGGCAACTCCAATCACCA+TGG 0.695180 4_1:+42856888 Msa0548610:CDS
AATTCTCGAGTCCATTCCAG+GGG 0.695829 4_1:-42856568 None:intergenic
ATGGGAAATCAAATTGCTGG+TGG 0.697193 4_1:+42856651 Msa0548610:CDS
GTGGAGAATGAAAAGACCAG+AGG 0.704282 4_1:+42854449 Msa0548610:CDS
CAAGTAGTTCCTGTCCACAG+AGG 0.711575 4_1:-42856766 None:intergenic
GAGGATGTCAGAGTATGCTG+CGG 0.711909 4_1:+42856719 Msa0548610:CDS
AGTAGTTCCTGTCCACAGAG+GGG 0.733621 4_1:-42856764 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTAAAATTTTGGGTT+TGG + chr4_1:42853447-42853466 Msa0548610:five_prime_UTR 15.0%
!!! TTAAGAAAGTTTGAATTTTT+AGG + chr4_1:42853796-42853815 Msa0548610:five_prime_UTR 15.0%
!!! ATTAATCAAAAATTTAGAAC+AGG - chr4_1:42854831-42854850 None:intergenic 15.0%
!! TATTATAATAAACTACTTTC+AGG + chr4_1:42855174-42855193 Msa0548610:intron 15.0%
!!! TTTAAATTTTCAGTTACATA+TGG + chr4_1:42855535-42855554 Msa0548610:intron 15.0%
!!! TTTAAATTTTCAGTTACTTT+TGG + chr4_1:42855637-42855656 Msa0548610:intron 15.0%
!! ATTCAAGAAAATAATAGAAA+AGG - chr4_1:42857653-42857672 None:intergenic 15.0%
!! AAAGCAATCAATAATTAACA+AGG - chr4_1:42853669-42853688 None:intergenic 20.0%
!!! TATTAGGGTTTGATAATTTT+TGG + chr4_1:42853829-42853848 Msa0548610:five_prime_UTR 20.0%
!! AAAGAGAGTTGAATATATTT+AGG + chr4_1:42854042-42854061 Msa0548610:CDS 20.0%
!!! ATTGCAATTCTTTTGATTAA+TGG + chr4_1:42854852-42854871 Msa0548610:intron 20.0%
!!! CTAACATTTTAGTTTTATGT+TGG + chr4_1:42855037-42855056 Msa0548610:intron 20.0%
!!! GATTCAGAATTTTTTAGATA+TGG - chr4_1:42856228-42856247 None:intergenic 20.0%
!! TATCTAAAAAATTCTGAATC+AGG + chr4_1:42856228-42856247 Msa0548610:CDS 20.0%
!! ATCTAAAAAATTCTGAATCA+GGG + chr4_1:42856229-42856248 Msa0548610:CDS 20.0%
!! TTGAAATATGAGTTATTCAA+AGG - chr4_1:42856339-42856358 None:intergenic 20.0%
!! TTGAATAACTCATATTTCAA+AGG + chr4_1:42856339-42856358 Msa0548610:CDS 20.0%
!! AATTCATCATTCACTAATTA+TGG + chr4_1:42856429-42856448 Msa0548610:CDS 20.0%
!! GGTAAAAATTATTATTCTCT+CGG + chr4_1:42857423-42857442 Msa0548610:intron 20.0%
!!! ATAATAAAAAACCTTTTGCA+TGG + chr4_1:42857995-42858014 Msa0548610:intron 20.0%
!!! TTAAAATTTTGGGTTTGGTT+TGG + chr4_1:42853452-42853471 Msa0548610:five_prime_UTR 25.0%
! GTATTTATAATCCTCATAGA+TGG + chr4_1:42853514-42853533 Msa0548610:five_prime_UTR 25.0%
!!! TTTAGGTTGTTTCTGTTATT+AGG + chr4_1:42853813-42853832 Msa0548610:five_prime_UTR 25.0%
!!! TTAGGTTGTTTCTGTTATTA+GGG + chr4_1:42853814-42853833 Msa0548610:five_prime_UTR 25.0%
!! TAATAGTATTGAAGATAAGC+TGG - chr4_1:42854224-42854243 None:intergenic 25.0%
!!! TTCATTTGTTTTTTTCTGCT+GGG + chr4_1:42854675-42854694 Msa0548610:intron 25.0%
! TTCATATCATTCTATCTGTT+TGG + chr4_1:42854768-42854787 Msa0548610:intron 25.0%
! TCACAATGAGCTATAAATAA+TGG - chr4_1:42854917-42854936 None:intergenic 25.0%
! TTATTTATAGCTCATTGTGA+TGG + chr4_1:42854917-42854936 Msa0548610:intron 25.0%
!! CACTAATGTTCTTTTATGAT+CGG + chr4_1:42855000-42855019 Msa0548610:intron 25.0%
! ACTAAAATGTTAGATACTAC+AGG - chr4_1:42855030-42855049 None:intergenic 25.0%
!! GTATATGTTTATATTGGTCT+TGG + chr4_1:42855287-42855306 Msa0548610:intron 25.0%
! TTTCAGTTACATATGGAAAT+TGG + chr4_1:42855542-42855561 Msa0548610:intron 25.0%
!! AATCATCAGAGATATCTTTT+TGG + chr4_1:42856168-42856187 Msa0548610:CDS 25.0%
! AACTACAGAAGAAAAAAACA+TGG + chr4_1:42857330-42857349 Msa0548610:CDS 25.0%
! AGAAAAAAACATGGTTTATC+AGG + chr4_1:42857339-42857358 Msa0548610:CDS 25.0%
!! TTATGTGACAAATGAGTTTT+AGG - chr4_1:42857979-42857998 None:intergenic 25.0%
! AAACAACAAAAAATTCCAGT+AGG - chr4_1:42858160-42858179 None:intergenic 25.0%
ACAAAAGTTGAGGTTAAGAA+TGG - chr4_1:42853618-42853637 None:intergenic 30.0%
! GCTGAAAGTTGGAATTTTTA+TGG + chr4_1:42853750-42853769 Msa0548610:five_prime_UTR 30.0%
!! TAGGGTTTGATAATTTTTGG+TGG + chr4_1:42853832-42853851 Msa0548610:five_prime_UTR 30.0%
!!! AGGGTTTGATAATTTTTGGT+GGG + chr4_1:42853833-42853852 Msa0548610:five_prime_UTR 30.0%
! GTTTTATGTGTGTTAGTGTT+TGG + chr4_1:42853870-42853889 Msa0548610:five_prime_UTR 30.0%
TTTAAGAATGTTGTCTGAGT+TGG + chr4_1:42853911-42853930 Msa0548610:exon 30.0%
TTAAGAATGTTGTCTGAGTT+GGG + chr4_1:42853912-42853931 Msa0548610:exon 30.0%
GAGTTGAATATATTTAGGAG+CGG + chr4_1:42854047-42854066 Msa0548610:CDS 30.0%
CAAATGTGAATTTGAATCCT+AGG + chr4_1:42854246-42854265 Msa0548610:CDS 30.0%
! TTAACTTTAGGAAGCAAGAA+AGG + chr4_1:42854420-42854439 Msa0548610:CDS 30.0%
!!! TTTGTTGTTTTCTGCTGTTA+AGG + chr4_1:42854629-42854648 Msa0548610:intron 30.0%
!!! GTTCATTTGTTTTTTTCTGC+TGG + chr4_1:42854674-42854693 Msa0548610:intron 30.0%
!!! GATGGTACTTTTGCTATTTA+AGG + chr4_1:42854705-42854724 Msa0548610:intron 30.0%
!! TTTGCTATTTAAGGCTGTAT+TGG + chr4_1:42854714-42854733 Msa0548610:intron 30.0%
TAACTGACAATATGCATCTT+TGG + chr4_1:42854880-42854899 Msa0548610:intron 30.0%
AGCATATCATTCAATGCATT+CGG + chr4_1:42854947-42854966 Msa0548610:intron 30.0%
CGATCATAAAAGAACATTAG+TGG - chr4_1:42855002-42855021 None:intergenic 30.0%
CATGTCAAATGCTTTATATG+CGG - chr4_1:42855118-42855137 None:intergenic 30.0%
GGCAGAGTATATGTTTATAT+TGG + chr4_1:42855281-42855300 Msa0548610:intron 30.0%
GAGAAGAGTTTGAATAACAA+GGG - chr4_1:42855475-42855494 None:intergenic 30.0%
AGAGAAGAGTTTGAATAACA+AGG - chr4_1:42855476-42855495 None:intergenic 30.0%
! ATTTATTTGTTGACCTGTAG+AGG + chr4_1:42855566-42855585 Msa0548610:intron 30.0%
AAAATTGTATTTGCCTCTAC+AGG - chr4_1:42855582-42855601 None:intergenic 30.0%
!!! TTTCAGTTACTTTTGGTAAC+TGG + chr4_1:42855644-42855663 Msa0548610:intron 30.0%
ATATCATCCTGCAAAATTAC+CGG - chr4_1:42855721-42855740 None:intergenic 30.0%
TCATCTGCAACACAAAATAT+TGG + chr4_1:42855856-42855875 Msa0548610:CDS 30.0%
!! AGATATCTTTTTGGTATGCA+GGG + chr4_1:42856177-42856196 Msa0548610:CDS 30.0%
TTCACTAATTATGGCTTAAG+CGG + chr4_1:42856438-42856457 Msa0548610:CDS 30.0%
CTCATATACTGAAGATACAT+CGG - chr4_1:42856702-42856721 None:intergenic 30.0%
TTGACTTAATTTACGATCGT+TGG + chr4_1:42857256-42857275 Msa0548610:intron 30.0%
CAAGCTTCTGTTGAATAAAT+CGG - chr4_1:42857303-42857322 None:intergenic 30.0%
CACATAATTACCAAAGACAT+CGG - chr4_1:42857395-42857414 None:intergenic 30.0%
TGGTAATTATGTGGTTCAAA+AGG + chr4_1:42857402-42857421 Msa0548610:intron 30.0%
!! CGGTTTATCATTCTTTTTCA+TGG + chr4_1:42857443-42857462 Msa0548610:intron 30.0%
!! ATCATTCTTTTTCATGGATC+TGG + chr4_1:42857449-42857468 Msa0548610:intron 30.0%
GAATTAGCAAACAAGCTTAT+TGG + chr4_1:42857531-42857550 Msa0548610:CDS 30.0%
!! TCAGAAGGTATTGATGATTT+AGG + chr4_1:42857599-42857618 Msa0548610:intron 30.0%
!! AAGGTATTGATGATTTAGGT+TGG + chr4_1:42857603-42857622 Msa0548610:intron 30.0%
TAAAGAGAGTCCATATTGAA+AGG - chr4_1:42857697-42857716 None:intergenic 30.0%
TTTCAATATGGACTCTCTTT+AGG + chr4_1:42857696-42857715 Msa0548610:intron 30.0%
! AAAGTTATGGACGAGATTTT+AGG + chr4_1:42858060-42858079 Msa0548610:CDS 30.0%
!! TTTTGTTGGGTTTGGGTTTT+TGG + chr4_1:42853475-42853494 Msa0548610:five_prime_UTR 35.0%
ATAGATGGAACAAAACCCTA+AGG + chr4_1:42853529-42853548 Msa0548610:five_prime_UTR 35.0%
TAAAGAGAAAAAGAGGAGAG+AGG - chr4_1:42853590-42853609 None:intergenic 35.0%
GGTGCAATAAAGAGAAAAAG+AGG - chr4_1:42853597-42853616 None:intergenic 35.0%
ACTGATTGTGACAAAAGTTG+AGG - chr4_1:42853628-42853647 None:intergenic 35.0%
!! TGCTTTTAGTTGCTGAAAGT+TGG + chr4_1:42853739-42853758 Msa0548610:five_prime_UTR 35.0%
!!! TTTTGGTGATGAATTGGAGA+AGG + chr4_1:42853968-42853987 Msa0548610:CDS 35.0%
GATGAATTGGAGAAGGAAAT+AGG + chr4_1:42853975-42853994 Msa0548610:CDS 35.0%
!! GTGGTTTTTCAGATTTTCCT+GGG + chr4_1:42854150-42854169 Msa0548610:CDS 35.0%
CAATCTTCCTTTGACAACAA+AGG - chr4_1:42854281-42854300 None:intergenic 35.0%
! CTTTGTTGTCAAAGGAAGAT+TGG + chr4_1:42854279-42854298 Msa0548610:CDS 35.0%
AAGATTGGAGGTTTCAACAA+AGG + chr4_1:42854294-42854313 Msa0548610:CDS 35.0%
AGGTTTCAACAAAGGCTTAA+AGG + chr4_1:42854302-42854321 Msa0548610:CDS 35.0%
TTTCAACAAAGGCTTAAAGG+TGG + chr4_1:42854305-42854324 Msa0548610:CDS 35.0%
TTCAACAAAGGCTTAAAGGT+GGG + chr4_1:42854306-42854325 Msa0548610:CDS 35.0%
TTCCTAAAGTTAAAACCAGG+TGG - chr4_1:42854413-42854432 None:intergenic 35.0%
TGCTTCCTAAAGTTAAAACC+AGG - chr4_1:42854416-42854435 None:intergenic 35.0%
CTACCTGAAAAATTTCAGCA+AGG - chr4_1:42854544-42854563 None:intergenic 35.0%
! TTGTTTTCTGCTGTTAAGGT+TGG + chr4_1:42854633-42854652 Msa0548610:intron 35.0%
!!! CAATATGCATCTTTGGCTTT+TGG + chr4_1:42854887-42854906 Msa0548610:intron 35.0%
! ATAGCTCATTGTGATGGAAA+TGG + chr4_1:42854923-42854942 Msa0548610:intron 35.0%
! CGCATATAAAGCATTTGACA+TGG + chr4_1:42855116-42855135 Msa0548610:intron 35.0%
TATATCCTATACAACCCAAG+TGG - chr4_1:42855200-42855219 None:intergenic 35.0%
! TTTTATACCTCTCAGTGTTG+AGG + chr4_1:42855260-42855279 Msa0548610:intron 35.0%
!! TGGTCTTGGAGAATATGTTT+TGG + chr4_1:42855301-42855320 Msa0548610:intron 35.0%
TAATGCACTAGCAGAAAAAC+AGG + chr4_1:42855395-42855414 Msa0548610:intron 35.0%
! GGTAATTTTGCAGGATGATA+TGG + chr4_1:42855720-42855739 Msa0548610:intron 35.0%
TGATCCACAACATATTGCAA+GGG + chr4_1:42855945-42855964 Msa0548610:CDS 35.0%
GTCAGTCCTGATTCATTTAA+CGG + chr4_1:42856033-42856052 Msa0548610:CDS 35.0%
GAAACACCGTTAAATGAATC+AGG - chr4_1:42856042-42856061 None:intergenic 35.0%
TCATTTAACGGTGTTTCATC+TGG + chr4_1:42856045-42856064 Msa0548610:CDS 35.0%
!! GAGATATCTTTTTGGTATGC+AGG + chr4_1:42856176-42856195 Msa0548610:CDS 35.0%
ATTACCTCCTCCACTAAAAT+GGG - chr4_1:42856376-42856395 None:intergenic 35.0%
TATTACCTCCTCCACTAAAA+TGG - chr4_1:42856377-42856396 None:intergenic 35.0%
GCTCAATATCAGTCTATAGA+TGG + chr4_1:42856402-42856421 Msa0548610:CDS 35.0%
AATTATGGCTTAAGCGGTTA+TGG + chr4_1:42856444-42856463 Msa0548610:CDS 35.0%
! TCCTTGATGACTAACCAATA+TGG + chr4_1:42856489-42856508 Msa0548610:CDS 35.0%
AGATACATCGGATCAACAAA+CGG - chr4_1:42856690-42856709 None:intergenic 35.0%
CGATGTATCTTCAGTATATG+AGG + chr4_1:42856700-42856719 Msa0548610:CDS 35.0%
TTCAGATCATTGTGCCTAAT+TGG - chr4_1:42857002-42857021 None:intergenic 35.0%
AAAGCTTTCATCCATATTCC+CGG - chr4_1:42857090-42857109 None:intergenic 35.0%
! AAATCGGCTTCCATATTGAT+CGG - chr4_1:42857287-42857306 None:intergenic 35.0%
! CGATGTCTTTGGTAATTATG+TGG + chr4_1:42857393-42857412 Msa0548610:intron 35.0%
AACTGCAAGATATCAACTAC+TGG - chr4_1:42857480-42857499 None:intergenic 35.0%
!!! ATCTTGCAGTTTTTTGAGCA+TGG + chr4_1:42857489-42857508 Msa0548610:CDS 35.0%
TTTGCTAATTCTCTTCTCTG+GGG - chr4_1:42857522-42857541 None:intergenic 35.0%
! GTTTGCTAATTCTCTTCTCT+GGG - chr4_1:42857523-42857542 None:intergenic 35.0%
! TGTTTGCTAATTCTCTTCTC+TGG - chr4_1:42857524-42857543 None:intergenic 35.0%
TCAATACCTTCTGAATAACC+CGG - chr4_1:42857593-42857612 None:intergenic 35.0%
TTTCCTCTGTCCTTTCAATA+TGG + chr4_1:42857684-42857703 Msa0548610:intron 35.0%
ATCCAGATCAACAACTTCAA+TGG - chr4_1:42857722-42857741 None:intergenic 35.0%
TCTGGATCAGAAAATAGAGA+TGG + chr4_1:42857735-42857754 Msa0548610:CDS 35.0%
!!! TGGGTTTGGTTTGGTTTTGT+TGG + chr4_1:42853461-42853480 Msa0548610:five_prime_UTR 40.0%
!!! GGGTTTGGTTTGGTTTTGTT+GGG + chr4_1:42853462-42853481 Msa0548610:five_prime_UTR 40.0%
!!! TGGTTTGGTTTTGTTGGGTT+TGG + chr4_1:42853467-42853486 Msa0548610:five_prime_UTR 40.0%
!!! GGTTTGGTTTTGTTGGGTTT+GGG + chr4_1:42853468-42853487 Msa0548610:five_prime_UTR 40.0%
!!! AGGGTTTTGTTCCATCTATG+AGG - chr4_1:42853528-42853547 None:intergenic 40.0%
TGGTTCTTGCAAGAACCTTA+GGG - chr4_1:42853547-42853566 None:intergenic 40.0%
! TTGGTTCTTGCAAGAACCTT+AGG - chr4_1:42853548-42853567 None:intergenic 40.0%
!!! GGGTTGTTTTGGTGATGAAT+TGG + chr4_1:42853962-42853981 Msa0548610:CDS 40.0%
GTTCTTCTAATGCTGTTGGA+GGG + chr4_1:42854093-42854112 Msa0548610:CDS 40.0%
!! GGTGGTTTTTCAGATTTTCC+TGG + chr4_1:42854149-42854168 Msa0548610:CDS 40.0%
CCATTCACATCTTTATTCCC+AGG - chr4_1:42854170-42854189 None:intergenic 40.0%
CCTGGGAATAAAGATGTGAA+TGG + chr4_1:42854167-42854186 Msa0548610:CDS 40.0%
!! TGTGAATGGTGTTGTTTCTG+AGG + chr4_1:42854181-42854200 Msa0548610:CDS 40.0%
!! TTGTTTCTGAGGAAGAGCTT+AGG + chr4_1:42854192-42854211 Msa0548610:CDS 40.0%
TCTTCCTTTGACAACAAAGG+AGG - chr4_1:42854278-42854297 None:intergenic 40.0%
TGTTGTCAAAGGAAGATTGG+AGG + chr4_1:42854282-42854301 Msa0548610:CDS 40.0%
TCAACAAAGGCTTAAAGGTG+GGG + chr4_1:42854307-42854326 Msa0548610:CDS 40.0%
GGTAACATGACTGATGATAG+TGG + chr4_1:42854365-42854384 Msa0548610:CDS 40.0%
!! TTTGATTGGTTTGCCTAGCT+TGG + chr4_1:42854496-42854515 Msa0548610:CDS 40.0%
!! TTGATTGGTTTGCCTAGCTT+GGG + chr4_1:42854497-42854516 Msa0548610:CDS 40.0%
! GAGCCTTGCTGAAATTTTTC+AGG + chr4_1:42854538-42854557 Msa0548610:CDS 40.0%
TTTCTGCTGGGTACAAAAGA+TGG + chr4_1:42854687-42854706 Msa0548610:intron 40.0%
TAAACTACTTTCAGGCCACT+TGG + chr4_1:42855182-42855201 Msa0548610:intron 40.0%
AAACTACTTTCAGGCCACTT+GGG + chr4_1:42855183-42855202 Msa0548610:intron 40.0%
CATCAAAACTGCTGAATGTG+AGG - chr4_1:42855225-42855244 None:intergenic 40.0%
CACAGAGAAACAGTGAGATA+TGG - chr4_1:42855327-42855346 None:intergenic 40.0%
!! AAGCTCTGGGTAGAAGAAAA+GGG - chr4_1:42855694-42855713 None:intergenic 40.0%
!! TAAGCTCTGGGTAGAAGAAA+AGG - chr4_1:42855695-42855714 None:intergenic 40.0%
AATTACCGGTCATAAGCTCT+GGG - chr4_1:42855707-42855726 None:intergenic 40.0%
AAATTACCGGTCATAAGCTC+TGG - chr4_1:42855708-42855727 None:intergenic 40.0%
! CTTATGACCGGTAATTTTGC+AGG + chr4_1:42855711-42855730 Msa0548610:intron 40.0%
GCAGCATAAGAATATGAAGC+TGG - chr4_1:42855886-42855905 None:intergenic 40.0%
TATTCTTATGCTGCTGCACT+AGG + chr4_1:42855892-42855911 Msa0548610:CDS 40.0%
CTTGCAATATGTTGTGGATC+AGG - chr4_1:42855946-42855965 None:intergenic 40.0%
CTGATCCACAACATATTGCA+AGG + chr4_1:42855944-42855963 Msa0548610:CDS 40.0%
AATGTCTCTTCTGACAAGAG+AGG + chr4_1:42856006-42856025 Msa0548610:CDS 40.0%
TGAAAACCATTTGCCATCAC+AGG + chr4_1:42856128-42856147 Msa0548610:CDS 40.0%
!! TATCTTTTTGGTATGCAGGG+TGG + chr4_1:42856180-42856199 Msa0548610:CDS 40.0%
TGTGCAGGGACAGATTATTA+AGG - chr4_1:42856287-42856306 None:intergenic 40.0%
TTAATAATCTGTCCCTGCAC+AGG + chr4_1:42856286-42856305 Msa0548610:CDS 40.0%
! GCCATATTGGTTAGTCATCA+AGG - chr4_1:42856493-42856512 None:intergenic 40.0%
CCAAGATTATGCACATCAGA+AGG - chr4_1:42856627-42856646 None:intergenic 40.0%
CCTTCTGATGTGCATAATCT+TGG + chr4_1:42856624-42856643 Msa0548610:CDS 40.0%
CTGATGTGCATAATCTTGGT+CGG + chr4_1:42856628-42856647 Msa0548610:CDS 40.0%
ATGGGAAATCAAATTGCTGG+TGG + chr4_1:42856651-42856670 Msa0548610:CDS 40.0%
! GCATTGTACTGTGACTTTTG+AGG - chr4_1:42856852-42856871 None:intergenic 40.0%
TCACAGTACAATGCACAACT+TGG + chr4_1:42856858-42856877 Msa0548610:CDS 40.0%
TCCAATCACCATGGTTACTA+TGG + chr4_1:42856897-42856916 Msa0548610:CDS 40.0%
TCCATAGTAACCATGGTGAT+TGG - chr4_1:42856901-42856920 None:intergenic 40.0%
CCATGGTTACTATGGAAATC+CGG + chr4_1:42856905-42856924 Msa0548610:CDS 40.0%
TACTATGGAAATCCGGCATA+TGG + chr4_1:42856912-42856931 Msa0548610:CDS 40.0%
ATTGTGCCTAATTGGACTTC+CGG - chr4_1:42856994-42857013 None:intergenic 40.0%
! AACAACATGCGTTTTGCTTC+TGG + chr4_1:42857020-42857039 Msa0548610:CDS 40.0%
AAGCTTTGCTTCTTCTCTGT+TGG + chr4_1:42857103-42857122 Msa0548610:CDS 40.0%
TTCAGAGAGCTCAAAACACT+TGG - chr4_1:42857150-42857169 None:intergenic 40.0%
!! TTTGAGCTCTCTGAAATTGC+CGG + chr4_1:42857155-42857174 Msa0548610:CDS 40.0%
CCTGAATTCAACAACATGTC+CGG - chr4_1:42857177-42857196 None:intergenic 40.0%
GAAGGCTAAGTGTAAGAACA+TGG - chr4_1:42857557-42857576 None:intergenic 40.0%
! ACACTTAGCCTTCAGATGTA+TGG + chr4_1:42857564-42857583 Msa0548610:CDS 40.0%
AGTCCATATTGAAAGGACAG+AGG - chr4_1:42857690-42857709 None:intergenic 40.0%
GAGATGGTTAAAGAGCTTGA+TGG + chr4_1:42857751-42857770 Msa0548610:CDS 40.0%
TAAAGTCGATCGCATCTTCA+GGG - chr4_1:42857843-42857862 None:intergenic 40.0%
ATAAAGTCGATCGCATCTTC+AGG - chr4_1:42857844-42857863 None:intergenic 40.0%
TAACTTTCTGCTGTGTTGCA+GGG - chr4_1:42858047-42858066 None:intergenic 40.0%
ATAACTTTCTGCTGTGTTGC+AGG - chr4_1:42858048-42858067 None:intergenic 40.0%
TGCAACACAGCAGAAAGTTA+TGG + chr4_1:42858047-42858066 Msa0548610:CDS 40.0%
TTTCTTACTACTCAGCCTAC+TGG + chr4_1:42858142-42858161 Msa0548610:intron 40.0%
! AGAGAGGAATTTGAAGCTGG+CGG - chr4_1:42853574-42853593 None:intergenic 45.0%
! AGGAGAGAGGAATTTGAAGC+TGG - chr4_1:42853577-42853596 None:intergenic 45.0%
TTGGGAAGAAGACCAGTGAT+TGG + chr4_1:42853930-42853949 Msa0548610:CDS 45.0%
ACCAGTGATTGGCAATAACG+AGG + chr4_1:42853941-42853960 Msa0548610:CDS 45.0%
CCAGTGATTGGCAATAACGA+GGG + chr4_1:42853942-42853961 Msa0548610:CDS 45.0%
! GGCAATAACGAGGGTTGTTT+TGG + chr4_1:42853951-42853970 Msa0548610:CDS 45.0%
TTAGAAGAACCCTCCACAGT+AGG - chr4_1:42854083-42854102 None:intergenic 45.0%
GAGGGTTCTTCTAATGCTGT+TGG + chr4_1:42854089-42854108 Msa0548610:CDS 45.0%
GGTTCTTCTAATGCTGTTGG+AGG + chr4_1:42854092-42854111 Msa0548610:CDS 45.0%
AATGCTGTTGGAGGGTTGTT+TGG + chr4_1:42854101-42854120 Msa0548610:CDS 45.0%
! TCCACCTCCTTTGTTGTCAA+AGG + chr4_1:42854271-42854290 Msa0548610:CDS 45.0%
TCCTTTGACAACAAAGGAGG+TGG - chr4_1:42854275-42854294 None:intergenic 45.0%
CTGTAGGTGGAATTGGAGAT+AGG + chr4_1:42854336-42854355 Msa0548610:CDS 45.0%
TAGGTGGAATTGGAGATAGG+AGG + chr4_1:42854339-42854358 Msa0548610:CDS 45.0%
GGAATTGGAGATAGGAGGAA+AGG + chr4_1:42854344-42854363 Msa0548610:CDS 45.0%
!! TGACTGATGATAGTGGTGCT+AGG + chr4_1:42854372-42854391 Msa0548610:CDS 45.0%
!!! CGCCACCTGGTTTTAACTTT+AGG + chr4_1:42854408-42854427 Msa0548610:CDS 45.0%
TAGGAAGCAAGAAAGGAGTG+AGG + chr4_1:42854427-42854446 Msa0548610:CDS 45.0%
GTGGAGAATGAAAAGACCAG+AGG + chr4_1:42854449-42854468 Msa0548610:CDS 45.0%
TTGCTTCTAAGTCCCAAGCT+AGG - chr4_1:42854512-42854531 None:intergenic 45.0%
! ACAGGCATTACCGAGTCTTT+TGG + chr4_1:42855413-42855432 Msa0548610:intron 45.0%
! GCATTACCGAGTCTTTTGGT+AGG + chr4_1:42855417-42855436 Msa0548610:intron 45.0%
ACTGAGCCTACCAAAAGACT+CGG - chr4_1:42855426-42855445 None:intergenic 45.0%
TTCTACCCAGAGCTTATGAC+CGG + chr4_1:42855699-42855718 Msa0548610:intron 45.0%
!! ATGCATTACGACTTGCTGGA+CGG - chr4_1:42855777-42855796 None:intergenic 45.0%
TCGAATGCATTACGACTTGC+TGG - chr4_1:42855781-42855800 None:intergenic 45.0%
ATAGGTGTGAGACATGGACT+AGG - chr4_1:42855973-42855992 None:intergenic 45.0%
AGTCCATGTCTCACACCTAT+TGG + chr4_1:42855973-42855992 Msa0548610:CDS 45.0%
! GATCTTGTGGCTGCTTTATC+CGG + chr4_1:42856084-42856103 Msa0548610:CDS 45.0%
! ATCTTGTGGCTGCTTTATCC+GGG + chr4_1:42856085-42856104 Msa0548610:CDS 45.0%
TTCTGCTGACAAGTTCATCC+CGG - chr4_1:42856106-42856125 None:intergenic 45.0%
ACTCAACCTGTGATGGCAAA+TGG - chr4_1:42856137-42856156 None:intergenic 45.0%
ACATCAGACTCAACCTGTGA+TGG - chr4_1:42856144-42856163 None:intergenic 45.0%
! TCAGGGCATTTGCAAAGTTC+AGG + chr4_1:42856246-42856265 Msa0548610:CDS 45.0%
TGCAAAGTTCAGGTAAGAGC+AGG + chr4_1:42856256-42856275 Msa0548610:CDS 45.0%
! TCACCTACCTCCCATTTTAG+TGG + chr4_1:42856363-42856382 Msa0548610:CDS 45.0%
TATGGCTTAAGCGGTTATGG+TGG + chr4_1:42856447-42856466 Msa0548610:CDS 45.0%
ATCAAGGATGTCAATGCTGC+AGG - chr4_1:42856477-42856496 None:intergenic 45.0%
!! GCAGATTACTGGTGCCATAT+TGG - chr4_1:42856506-42856525 None:intergenic 45.0%
AAACATCGGTGGCAGATTAC+TGG - chr4_1:42856517-42856536 None:intergenic 45.0%
! GCAACGTTTTCAAACATCGG+TGG - chr4_1:42856528-42856547 None:intergenic 45.0%
! GCGGCAACGTTTTCAAACAT+CGG - chr4_1:42856531-42856550 None:intergenic 45.0%
AATTCTCGAGTCCATTCCAG+GGG - chr4_1:42856571-42856590 None:intergenic 45.0%
GAATTCTCGAGTCCATTCCA+GGG - chr4_1:42856572-42856591 None:intergenic 45.0%
AGAATTCTCGAGTCCATTCC+AGG - chr4_1:42856573-42856592 None:intergenic 45.0%
! GGAATGGACTCGAGAATTCT+TGG + chr4_1:42856573-42856592 Msa0548610:CDS 45.0%
ATGGACTCGAGAATTCTTGG+AGG + chr4_1:42856576-42856595 Msa0548610:CDS 45.0%
GAGAATTCTTGGAGGTGGTT+TGG + chr4_1:42856584-42856603 Msa0548610:CDS 45.0%
TGTGCATAATCTTGGTCGGA+TGG + chr4_1:42856632-42856651 Msa0548610:CDS 45.0%
GTGCATAATCTTGGTCGGAT+GGG + chr4_1:42856633-42856652 Msa0548610:CDS 45.0%
CGGATGGGAAATCAAATTGC+TGG + chr4_1:42856648-42856667 Msa0548610:CDS 45.0%
AAGTAGTTCCTGTCCACAGA+GGG - chr4_1:42856768-42856787 None:intergenic 45.0%
TCTGTGGACAGGAACTACTT+GGG + chr4_1:42856768-42856787 Msa0548610:CDS 45.0%
CAGTACAATGCACAACTTGG+TGG + chr4_1:42856861-42856880 Msa0548610:CDS 45.0%
! GCACAACTTGGTGGTAAATC+AGG + chr4_1:42856870-42856889 Msa0548610:CDS 45.0%
CCGGATTTCCATAGTAACCA+TGG - chr4_1:42856908-42856927 None:intergenic 45.0%
GAAATCCGGCATATGGTGTT+GGG + chr4_1:42856919-42856938 Msa0548610:CDS 45.0%
GTCTTATCCAGGAAGTCCAA+TGG + chr4_1:42856944-42856963 Msa0548610:CDS 45.0%
TTGGATCCGGAAGTCCAATT+AGG + chr4_1:42856985-42857004 Msa0548610:CDS 45.0%
!!! TGCGTTTTGCTTCTGGAATG+AGG + chr4_1:42857027-42857046 Msa0548610:CDS 45.0%
! TCTGGAATGAGGAACTTAGC+TGG + chr4_1:42857038-42857057 Msa0548610:CDS 45.0%
CTGGAATGAGGAACTTAGCT+GGG + chr4_1:42857039-42857058 Msa0548610:CDS 45.0%
TGGAATGAGGAACTTAGCTG+GGG + chr4_1:42857040-42857059 Msa0548610:CDS 45.0%
GCATGTAGATTCCGGGAATA+TGG + chr4_1:42857076-42857095 Msa0548610:CDS 45.0%
CCGGACATGTTGTTGAATTC+AGG + chr4_1:42857174-42857193 Msa0548610:CDS 45.0%
! GTCATCAAAGCAAGAGCATG+TGG - chr4_1:42857373-42857392 None:intergenic 45.0%
! GCTTTGATGACCGATGTCTT+TGG + chr4_1:42857382-42857401 Msa0548610:CDS 45.0%
GGCCATTGAAGTTGTTGATC+TGG + chr4_1:42857717-42857736 Msa0548610:intron 45.0%
CGTTGTGTTCGTGATCAGAA+TGG + chr4_1:42857784-42857803 Msa0548610:CDS 45.0%
ACACTCTCAACCCATCCATA+CGG + chr4_1:42857892-42857911 Msa0548610:CDS 45.0%
TGTATCACACGACAACCGTA+TGG - chr4_1:42857910-42857929 None:intergenic 45.0%
ATACGGTTGTCGTGTGATAC+AGG + chr4_1:42857909-42857928 Msa0548610:CDS 45.0%
AGTACTCTCTGCCATGCAAA+AGG - chr4_1:42858009-42858028 None:intergenic 45.0%
!! TTTTGCATGGCAGAGAGTAC+TGG + chr4_1:42858008-42858027 Msa0548610:intron 45.0%
ATGCTAGCACAGGATCAGTA+TGG + chr4_1:42858093-42858112 Msa0548610:CDS 45.0%
GTATGGCAACTACGTTGTTC+AGG + chr4_1:42858110-42858129 Msa0548610:CDS 45.0%
!!! TGAAATTAAAATTAAAATTT+TGG + chr4_1:42853441-42853460 Msa0548610:five_prime_UTR 5.0%
!!! GAAATTAAAATTAAAATTTT+GGG + chr4_1:42853442-42853461 Msa0548610:five_prime_UTR 5.0%
! AATTTGAAGCTGGCGGCGAT+TGG - chr4_1:42853567-42853586 None:intergenic 50.0%
CCCTCGTTATTGCCAATCAC+TGG - chr4_1:42853945-42853964 None:intergenic 50.0%
GAATGTTGCTCCGCGAACAA+CGG + chr4_1:42853997-42854016 Msa0548610:CDS 50.0%
AACAAAGGAGGTGGAAGCCT+AGG - chr4_1:42854266-42854285 None:intergenic 50.0%
TCCAATTCCACCTACAGCTG+AGG - chr4_1:42854333-42854352 None:intergenic 50.0%
! TCAATGTTTTCGACGCCACC+TGG + chr4_1:42854395-42854414 Msa0548610:CDS 50.0%
GAAGCAAGAAAGGAGTGAGG+TGG + chr4_1:42854430-42854449 Msa0548610:CDS 50.0%
AGACCAGAGGTTCTGCTGAA+TGG + chr4_1:42854462-42854481 Msa0548610:CDS 50.0%
GACCAGAGGTTCTGCTGAAT+GGG + chr4_1:42854463-42854482 Msa0548610:CDS 50.0%
ACCAGAGGTTCTGCTGAATG+GGG + chr4_1:42854464-42854483 Msa0548610:CDS 50.0%
!! TGGGGTGGTGATGGTTTGAT+TGG + chr4_1:42854482-42854501 Msa0548610:CDS 50.0%
! TCAGGCCACTTGGGTTGTAT+AGG + chr4_1:42855192-42855211 Msa0548610:intron 50.0%
TACTCTGCCTCAACACTGAG+AGG - chr4_1:42855270-42855289 None:intergenic 50.0%
!! TGCATTACGACTTGCTGGAC+GGG - chr4_1:42855776-42855795 None:intergenic 50.0%
GCAGAGTTCGCTCATGTTCA+AGG + chr4_1:42855832-42855851 Msa0548610:CDS 50.0%
TCTTATGCTGCTGCACTAGG+AGG + chr4_1:42855895-42855914 Msa0548610:CDS 50.0%
GGAGCCCTTGCAATATGTTG+TGG - chr4_1:42855952-42855971 None:intergenic 50.0%
CCATGTCTCACACCTATTGG+CGG + chr4_1:42855976-42855995 Msa0548610:CDS 50.0%
ACATTTCTCCCTCCGCCAAT+AGG - chr4_1:42855991-42856010 None:intergenic 50.0%
GAACGAGTCAGCAGATCTTG+TGG + chr4_1:42856071-42856090 Msa0548610:CDS 50.0%
CCTCCACTAAAATGGGAGGT+AGG - chr4_1:42856369-42856388 None:intergenic 50.0%
!! CCTACCTCCCATTTTAGTGG+AGG + chr4_1:42856366-42856385 Msa0548610:CDS 50.0%
!! ACCTCCCATTTTAGTGGAGG+AGG + chr4_1:42856369-42856388 Msa0548610:CDS 50.0%
ACCTCCTCCACTAAAATGGG+AGG - chr4_1:42856373-42856392 None:intergenic 50.0%
GACTCGAGAATTCTTGGAGG+TGG + chr4_1:42856579-42856598 Msa0548610:CDS 50.0%
! TCTTGGAGGTGGTTTGGCTT+CGG + chr4_1:42856590-42856609 Msa0548610:CDS 50.0%
! AATTGCTGGTGGTGCTCTTC+AGG + chr4_1:42856662-42856681 Msa0548610:CDS 50.0%
GAGGATGTCAGAGTATGCTG+CGG + chr4_1:42856719-42856738 Msa0548610:CDS 50.0%
AGTAGTTCCTGTCCACAGAG+GGG - chr4_1:42856767-42856786 None:intergenic 50.0%
CAAGTAGTTCCTGTCCACAG+AGG - chr4_1:42856769-42856788 None:intergenic 50.0%
CTCTGTGGACAGGAACTACT+TGG + chr4_1:42856767-42856786 Msa0548610:CDS 50.0%
TCAGGCAACTCCAATCACCA+TGG + chr4_1:42856888-42856907 Msa0548610:CDS 50.0%
GGAAATCCGGCATATGGTGT+TGG + chr4_1:42856918-42856937 Msa0548610:CDS 50.0%
GACAACCCAACACCATATGC+CGG - chr4_1:42856927-42856946 None:intergenic 50.0%
! GGTGTTGGGTTGTCTTATCC+AGG + chr4_1:42856933-42856952 Msa0548610:CDS 50.0%
GAGTTTGCCATTGGACTTCC+TGG - chr4_1:42856954-42856973 None:intergenic 50.0%
GGAAGTCCAATGGCAAACTC+TGG + chr4_1:42856954-42856973 Msa0548610:CDS 50.0%
GGAGAACCAGAGTTTGCCAT+TGG - chr4_1:42856963-42856982 None:intergenic 50.0%
!! GCAAACTCTGGTTCTCCAGT+TGG + chr4_1:42856966-42856985 Msa0548610:CDS 50.0%
!! TCTGGTTCTCCAGTTGGATC+CGG + chr4_1:42856972-42856991 Msa0548610:CDS 50.0%
ATTGGACTTCCGGATCCAAC+TGG - chr4_1:42856984-42857003 None:intergenic 50.0%
AGGAACTTAGCTGGGGTCAT+GGG + chr4_1:42857047-42857066 Msa0548610:CDS 50.0%
GGACCTTGGCATGTAGATTC+CGG + chr4_1:42857068-42857087 Msa0548610:CDS 50.0%
GACCTTGGCATGTAGATTCC+GGG + chr4_1:42857069-42857088 Msa0548610:CDS 50.0%
TTCCCGGAATCTACATGCCA+AGG - chr4_1:42857074-42857093 None:intergenic 50.0%
!! GTTGGCAGTGCCGATCAATA+TGG + chr4_1:42857274-42857293 Msa0548610:intron 50.0%
CACACGACAACCGTATGGAT+GGG - chr4_1:42857905-42857924 None:intergenic 50.0%
TCACACGACAACCGTATGGA+TGG - chr4_1:42857906-42857925 None:intergenic 50.0%
CTTCTTGCCTCCGTTGTTCG+CGG - chr4_1:42854010-42854029 None:intergenic 55.0%
ATCAGCTCCTCCTACTGTGG+AGG + chr4_1:42854070-42854089 Msa0548610:CDS 55.0%
TCAGCTCCTCCTACTGTGGA+GGG + chr4_1:42854071-42854090 Msa0548610:CDS 55.0%
GAAGAACCCTCCACAGTAGG+AGG - chr4_1:42854080-42854099 None:intergenic 55.0%
GCTGTTGGAGGGTTGTTTGG+TGG + chr4_1:42854104-42854123 Msa0548610:CDS 55.0%
! GTTGGAGGGTTGTTTGGTGG+CGG + chr4_1:42854107-42854126 Msa0548610:CDS 55.0%
GCCTCAGCTGTAGGTGGAAT+TGG + chr4_1:42854329-42854348 Msa0548610:CDS 55.0%
ACCCCATTCAGCAGAACCTC+TGG - chr4_1:42854468-42854487 None:intergenic 55.0%
AGAGGTTCTGCTGAATGGGG+TGG + chr4_1:42854467-42854486 Msa0548610:CDS 55.0%
TCTGCTGAATGGGGTGGTGA+TGG + chr4_1:42854473-42854492 Msa0548610:CDS 55.0%
!! TTACGACTTGCTGGACGGGA+AGG - chr4_1:42855772-42855791 None:intergenic 55.0%
CCGCCAATAGGTGTGAGACA+TGG - chr4_1:42855979-42855998 None:intergenic 55.0%
TGTCTCACACCTATTGGCGG+AGG + chr4_1:42855979-42855998 Msa0548610:CDS 55.0%
GTCTCACACCTATTGGCGGA+GGG + chr4_1:42855980-42855999 Msa0548610:CDS 55.0%
ATGCAGGGTGGTCAAGAGCA+CGG + chr4_1:42856192-42856211 Msa0548610:CDS 55.0%
TAATCTGTCCCTGCACAGGC+AGG + chr4_1:42856290-42856309 Msa0548610:CDS 55.0%
GGATGCCATCATGGATGCAG+CGG - chr4_1:42856550-42856569 None:intergenic 55.0%
CATTCCAGGGGATGCCATCA+TGG - chr4_1:42856559-42856578 None:intergenic 55.0%
CATGATGGCATCCCCTGGAA+TGG + chr4_1:42856557-42856576 Msa0548610:CDS 55.0%
! CTTGGAGGTGGTTTGGCTTC+GGG + chr4_1:42856591-42856610 Msa0548610:CDS 55.0%
TGCTCTTAACGACCCCTCTG+TGG + chr4_1:42856752-42856771 Msa0548610:CDS 55.0%
TTAACGACCCCTCTGTGGAC+AGG + chr4_1:42856757-42856776 Msa0548610:CDS 55.0%
GAGCTGCAGAAAGCCTACCT+CGG + chr4_1:42856813-42856832 Msa0548610:CDS 55.0%
AGCTGCAGAAAGCCTACCTC+GGG + chr4_1:42856814-42856833 Msa0548610:CDS 55.0%
GAGGAACTTAGCTGGGGTCA+TGG + chr4_1:42857046-42857065 Msa0548610:CDS 55.0%
GCCTTCAGATGTATGGCTGC+CGG + chr4_1:42857571-42857590 Msa0548610:CDS 55.0%
CCTTCAGATGTATGGCTGCC+GGG + chr4_1:42857572-42857591 Msa0548610:CDS 55.0%
TGGCTGCCGGGTTATTCAGA+AGG + chr4_1:42857584-42857603 Msa0548610:CDS 55.0%
CGCTGTTAGCATGCTAGCAC+AGG + chr4_1:42858083-42858102 Msa0548610:CDS 55.0%
TGTTGCTCCGCGAACAACGG+AGG + chr4_1:42854000-42854019 Msa0548610:CDS 60.0%
CGCGAACAACGGAGGCAAGA+AGG + chr4_1:42854008-42854027 Msa0548610:CDS 60.0%
CGGATCAGCTCCTCCTACTG+TGG + chr4_1:42854067-42854086 Msa0548610:CDS 60.0%
!! TTGTTTGGTGGCGGTGGTGG+TGG + chr4_1:42854116-42854135 Msa0548610:CDS 60.0%
AAAGGTGGGGCCTCAGCTGT+AGG + chr4_1:42854320-42854339 Msa0548610:CDS 60.0%
ACGGGAAGGAAGGCCTGTGA+CGG - chr4_1:42855758-42855777 None:intergenic 60.0%
!! GACTTGCTGGACGGGAAGGA+AGG - chr4_1:42855768-42855787 None:intergenic 60.0%
TAGCTCAGCCTGCCTGTGCA+GGG - chr4_1:42856301-42856320 None:intergenic 60.0%
CGTTGCCGCTGCATCCATGA+TGG + chr4_1:42856542-42856561 Msa0548610:CDS 60.0%
GCATCCATGATGGCATCCCC+TGG + chr4_1:42856552-42856571 Msa0548610:CDS 60.0%
CGAGAGAACAGACCCGAGGT+AGG - chr4_1:42856829-42856848 None:intergenic 60.0%
TAGCTGGGGTCATGGGACCT+TGG + chr4_1:42857054-42857073 Msa0548610:CDS 60.0%
CCCGGCAGCCATACATCTGA+AGG - chr4_1:42857575-42857594 None:intergenic 60.0%
!! GGAGGGTTGTTTGGTGGCGG+TGG + chr4_1:42854110-42854129 Msa0548610:CDS 65.0%
!! GGGTTGTTTGGTGGCGGTGG+TGG + chr4_1:42854113-42854132 Msa0548610:CDS 65.0%
!! TTTGGTGGCGGTGGTGGTGG+TGG + chr4_1:42854119-42854138 Msa0548610:CDS 65.0%
!! GGTGGTGGTGGTGGTGTTGC+TGG + chr4_1:42854128-42854147 Msa0548610:CDS 65.0%
!! GGTGGTGGTGGTGTTGCTGG+TGG + chr4_1:42854131-42854150 Msa0548610:CDS 65.0%
GAGCGTAACACCCCCGTCAC+AGG + chr4_1:42855742-42855761 Msa0548610:CDS 65.0%
GGAAGGAAGGCCTGTGACGG+GGG - chr4_1:42855755-42855774 None:intergenic 65.0%
GGGAAGGAAGGCCTGTGACG+GGG - chr4_1:42855756-42855775 None:intergenic 65.0%
CGGGAAGGAAGGCCTGTGAC+GGG - chr4_1:42855757-42855776 None:intergenic 65.0%
GTAGCTCAGCCTGCCTGTGC+AGG - chr4_1:42856302-42856321 None:intergenic 65.0%
! GGTGGTTTGGCTTCGGGAGC+TGG + chr4_1:42856597-42856616 Msa0548610:CDS 65.0%
GAGGCGAGAGAACAGACCCG+AGG - chr4_1:42856833-42856852 None:intergenic 65.0%
GGTGGGGCCTCAGCTGTAGG+TGG + chr4_1:42854323-42854342 Msa0548610:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42853361 42858235 42853361 ID=Msa0548610;Name=Msa0548610
chr4_1 mRNA 42853361 42858235 42853361 ID=Msa0548610-mRNA-1;Parent=Msa0548610;Name=Msa0548610-mRNA-1;_AED=0.04;_eAED=0.05;_QI=557|0.66|0.42|0.85|1|1|7|0|892
chr4_1 exon 42853361 42854559 42853361 ID=Msa0548610-mRNA-1:exon:11057;Parent=Msa0548610-mRNA-1
chr4_1 exon 42855733 42857195 42855733 ID=Msa0548610-mRNA-1:exon:11058;Parent=Msa0548610-mRNA-1
chr4_1 exon 42857282 42857403 42857282 ID=Msa0548610-mRNA-1:exon:11059;Parent=Msa0548610-mRNA-1
chr4_1 exon 42857481 42857605 42857481 ID=Msa0548610-mRNA-1:exon:11060;Parent=Msa0548610-mRNA-1
chr4_1 exon 42857718 42857930 42857718 ID=Msa0548610-mRNA-1:exon:11061;Parent=Msa0548610-mRNA-1
chr4_1 exon 42858021 42858131 42858021 ID=Msa0548610-mRNA-1:exon:11062;Parent=Msa0548610-mRNA-1
chr4_1 exon 42858233 42858235 42858233 ID=Msa0548610-mRNA-1:exon:11063;Parent=Msa0548610-mRNA-1
chr4_1 five_prime_UTR 42853361 42853917 42853361 ID=Msa0548610-mRNA-1:five_prime_utr;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42853918 42854559 42853918 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42855733 42857195 42855733 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42857282 42857403 42857282 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42857481 42857605 42857481 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42857718 42857930 42857718 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42858021 42858131 42858021 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
chr4_1 CDS 42858233 42858235 42858233 ID=Msa0548610-mRNA-1:cds;Parent=Msa0548610-mRNA-1
Gene Sequence

>Msa0548610

ATGTTGTCTGAGTTGGGAAGAAGACCAGTGATTGGCAATAACGAGGGTTGTTTTGGTGATGAATTGGAGAAGGAAATAGGAATGTTGCTCCGCGAACAACGGAGGCAAGAAGGCGATGATCGCGAAAGAGAGTTGAATATATTTAGGAGCGGATCAGCTCCTCCTACTGTGGAGGGTTCTTCTAATGCTGTTGGAGGGTTGTTTGGTGGCGGTGGTGGTGGTGGTGTTGCTGGTGGTTTTTCAGATTTTCCTGGGAATAAAGATGTGAATGGTGTTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCAAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCAAAGGAAGATTGGAGGTTTCAACAAAGGCTTAAAGGTGGGGCCTCAGCTGTAGGTGGAATTGGAGATAGGAGGAAAGGTAACATGACTGATGATAGTGGTGCTAGGTCAATGTTTTCGACGCCACCTGGTTTTAACTTTAGGAAGCAAGAAAGGAGTGAGGTGGAGAATGAAAAGACCAGAGGTTCTGCTGAATGGGGTGGTGATGGTTTGATTGGTTTGCCTAGCTTGGGACTTAGAAGCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACCCCCGTCACAGGCCTTCCTTCCCGTCCAGCAAGTCGTAATGCATTCGATGAAAATGTTGATAAAGTAAATACTTCTGAAGCAGAGTTCGCTCATGTTCAAGGATCATCTGCAACACAAAATATTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCACTAGGAGGATCTTCATTGTCAAGAAGCACTACTCCTGATCCACAACATATTGCAAGGGCTCCTAGTCCATGTCTCACACCTATTGGCGGAGGGAGAAATGTCTCTTCTGACAAGAGAGGCATTGTCAGTCCTGATTCATTTAACGGTGTTTCATCTGGCATGAACGAGTCAGCAGATCTTGTGGCTGCTTTATCCGGGATGAACTTGTCAGCAGAAGATGAAAACCATTTGCCATCACAGGTTGAGTCTGATGTCGATAATCATCAGAGATATCTTTTTGGTATGCAGGGTGGTCAAGAGCACGGCAAGCAACATCCATATCTAAAAAATTCTGAATCAGGGCATTTGCAAAGTTCAGGTAAGAGCAGGTCAGACCTTAATAATCTGTCCCTGCACAGGCAGGCTGAGCTACAAAACTCGACTGCTCCTTTGAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTGGAGGAGGTAATATGCAAGCTCAATATCAGTCTATAGATGGTATGAATTCATCATTCACTAATTATGGCTTAAGCGGTTATGGTGGAAATCCTGCAGCATTGACATCCTTGATGACTAACCAATATGGCACCAGTAATCTGCCACCGATGTTTGAAAACGTTGCCGCTGCATCCATGATGGCATCCCCTGGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCGGGAGCTGGTTCTCCTTCTGATGTGCATAATCTTGGTCGGATGGGAAATCAAATTGCTGGTGGTGCTCTTCAGGCTCCGTTTGTTGATCCGATGTATCTTCAGTATATGAGGATGTCAGAGTATGCTGCGGCACAACTCGCTGCTCTTAACGACCCCTCTGTGGACAGGAACTACTTGGGTAATTCGTACATGAATTTACTTGAGCTGCAGAAAGCCTACCTCGGGTCTGTTCTCTCGCCTCAAAAGTCACAGTACAATGCACAACTTGGTGGTAAATCAGGCAACTCCAATCACCATGGTTACTATGGAAATCCGGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCAGTTGGATCCGGAAGTCCAATTAGGCACAATGATCTGAACAACATGCGTTTTGCTTCTGGAATGAGGAACTTAGCTGGGGTCATGGGACCTTGGCATGTAGATTCCGGGAATATGGATGAAAGCTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAGCCAAGTGTTTTGAGCTCTCTGAAATTGCCGGACATGTTGTTGAATTCAGTGCCGATCAATATGGAAGCCGATTTATTCAACAGAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACCGATGTCTTTGTAGTTGATATCTTGCAGTTTTTTGAGCATGGACTTGCACCCCAGAGAAGAGAATTAGCAAACAAGCTTATTGGCCATGTTCTTACACTTAGCCTTCAGATGTATGGCTGCCGGGTTATTCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTAAAGAGCTTGATGGTAATATCATGCGTTGTGTTCGTGATCAGAATGGTAATCATGTCATTCAAAAATGTATTGAATGTGTCCCTGAAGATGCGATCGACTTTATTGTTTCAACATTTTTCGATCAAGTTGTGACACTCTCAACCCATCCATACGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGTGAAAGCCCTGCAACACAGCAGAAAGTTATGGACGAGATTTTAGGCGCTGTTAGCATGCTAGCACAGGATCAGTATGGCAACTACGTTGTTCAGTGA
Protein sequence

>Msa0548610

MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGSSNAVGGLFGGGGGGGVAGGFSDFPGNKDVNGVVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASAVGGIGDRRKGNMTDDSGARSMFSTPPGFNFRKQERSEVENEKTRGSAEWGGDGLIGLPSLGLRSKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFDENVDKVNTSEAEFAHVQGSSATQNIGLPASYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRNVSSDKRGIVSPDSFNGVSSGMNESADLVAALSGMNLSAEDENHLPSQVESDVDNHQRYLFGMQGGQEHGKQHPYLKNSESGHLQSSGKSRSDLNNLSLHRQAELQNSTAPLNNSYFKGSPTSHFSGGGNMQAQYQSIDGMNSSFTNYGLSGYGGNPAALTSLMTNQYGTSNLPPMFENVAAASMMASPGMDSRILGGGLASGAGSPSDVHNLGRMGNQIAGGALQAPFVDPMYLQYMRMSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNAQLGGKSGNSNHHGYYGNPAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHVDSGNMDESFASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFVVDILQFFEHGLAPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVKELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCESPATQQKVMDEILGAVSMLAQDQYGNYVVQ*