AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672550 MtrunA17_Chr4g0031951 98.541 1028 12 1 1 1028 1 1025 0.0 2092
Msa0672550 MtrunA17_Chr2g0328561 79.679 1058 170 12 1 1026 1 1045 0.0 1584
Msa0672550 MtrunA17_Chr5g0435601 57.564 1051 363 28 1 1024 9 1003 0.0 1070
Msa0672550 MtrunA17_Chr1g0199451 47.628 1033 425 27 20 1020 21 969 0.0 826
Msa0672550 MtrunA17_Chr2g0298151 39.569 1021 501 35 24 1010 35 973 0.0 557
Msa0672550 MtrunA17_Chr2g0298151 28.137 263 181 3 759 1020 650 905 3.75e-27 119
Msa0672550 MtrunA17_Chr5g0425961 32.508 323 205 7 691 1008 393 707 1.55e-45 176
Msa0672550 MtrunA17_Chr1g0207641 26.136 352 245 5 678 1021 118 462 3.69e-31 128
Msa0672550 MtrunA17_Chr3g0134501 26.644 289 201 5 691 974 209 491 1.36e-26 115
Msa0672550 MtrunA17_Chr2g0279091 32.768 177 114 2 831 1007 21 192 7.03e-26 106
Msa0672550 MtrunA17_Chr2g0279091 22.754 167 127 1 695 859 29 195 7.45e-11 62.8
Msa0672550 MtrunA17_Chr1g0202811 25.857 321 218 7 698 1007 94 405 2.07e-24 107
Msa0672550 MtrunA17_Chr2g0279101 33.333 138 88 2 691 824 424 561 2.06e-19 93.6
Msa0672550 MtrunA17_Chr5g0425331 28.402 169 116 3 724 888 19 186 9.55e-15 73.9
Msa0672550 MtrunA17_Chr2g0277761 23.132 281 191 5 696 969 114 376 2.20e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672550 AT2G29190.2 62.149 1033 314 21 1 1024 1 965 0.0 1167
Msa0672550 AT2G29190.1 62.149 1033 314 21 1 1024 1 965 0.0 1167
Msa0672550 AT2G29200.1 61.680 1036 310 22 1 1024 1 961 0.0 1158
Msa0672550 AT2G29200.2 61.680 1036 310 22 1 1024 1 961 0.0 1158
Msa0672550 AT2G29140.2 61.368 1038 312 27 1 1027 2 961 0.0 1131
Msa0672550 AT2G29140.1 61.368 1038 312 27 1 1027 2 961 0.0 1131
Msa0672550 AT3G10360.1 59.612 515 171 10 514 1020 506 991 0.0 599
Msa0672550 AT3G10360.1 32.787 366 223 10 20 365 26 388 3.60e-39 158
Msa0672550 AT3G20250.1 51.318 493 211 9 534 1012 422 899 2.08e-152 476
Msa0672550 AT3G20250.1 26.937 271 189 4 750 1018 564 827 1.56e-23 108
Msa0672550 AT3G20250.1 41.026 117 59 3 13 127 23 131 6.63e-15 80.1
Msa0672550 AT3G20250.3 51.318 493 211 9 534 1012 458 935 5.43e-152 476
Msa0672550 AT3G20250.3 26.937 271 189 4 750 1018 600 863 1.46e-23 108
Msa0672550 AT3G20250.3 41.026 117 59 3 13 127 23 131 5.72e-15 80.5
Msa0672550 AT3G20250.2 51.318 493 211 9 534 1012 458 935 5.43e-152 476
Msa0672550 AT3G20250.2 26.937 271 189 4 750 1018 600 863 1.46e-23 108
Msa0672550 AT3G20250.2 41.026 117 59 3 13 127 23 131 5.72e-15 80.5
Msa0672550 AT4G25880.1 47.746 488 209 8 531 1011 402 850 2.60e-139 440
Msa0672550 AT4G25880.1 27.650 217 125 4 833 1018 528 743 1.69e-15 82.0
Msa0672550 AT4G25880.5 47.746 488 209 8 531 1011 402 850 2.60e-139 440
Msa0672550 AT4G25880.5 27.650 217 125 4 833 1018 528 743 1.69e-15 82.0
Msa0672550 AT4G25880.4 47.746 488 209 8 531 1011 402 850 2.78e-139 440
Msa0672550 AT4G25880.4 27.650 217 125 4 833 1018 528 743 1.69e-15 82.0
Msa0672550 AT4G25880.3 46.721 488 208 9 531 1011 402 844 3.35e-133 424
Msa0672550 AT4G25880.3 27.919 197 110 4 853 1018 542 737 2.36e-13 75.1
Msa0672550 AT4G25880.2 46.721 488 208 9 531 1011 402 844 3.75e-133 424
Msa0672550 AT4G25880.2 27.919 197 110 4 853 1018 542 737 2.59e-13 75.1
Msa0672550 AT1G22240.1 32.198 323 208 6 690 1008 195 510 4.60e-50 186
Msa0672550 AT1G78160.1 31.677 322 209 6 691 1008 331 645 4.60e-47 180
Msa0672550 AT1G78160.2 31.677 322 209 6 691 1008 333 647 5.08e-47 179
Msa0672550 AT5G56510.4 29.907 321 216 4 691 1007 275 590 4.67e-44 170
Msa0672550 AT5G56510.6 29.907 321 216 4 691 1007 275 590 4.67e-44 170
Msa0672550 AT5G56510.2 29.907 321 216 4 691 1007 275 590 4.67e-44 170
Msa0672550 AT5G56510.1 29.907 321 216 4 691 1007 275 590 4.67e-44 170
Msa0672550 AT5G56510.3 29.907 321 216 4 691 1007 275 590 4.67e-44 170
Msa0672550 AT4G08840.1 30.723 332 214 8 684 1008 229 551 9.68e-41 159
Msa0672550 AT5G56510.5 30.796 289 191 4 691 975 275 558 4.50e-40 157
Msa0672550 AT5G56510.5 25.221 226 158 4 754 975 266 484 1.02e-13 75.9
Msa0672550 AT1G35730.1 29.448 326 214 7 691 1008 247 564 1.60e-38 152
Msa0672550 AT1G35730.2 29.448 326 214 7 691 1008 253 570 1.62e-38 152
Msa0672550 AT1G35750.1 30.960 323 208 9 691 1008 211 523 5.50e-36 144
Msa0672550 AT5G43090.1 19.565 322 244 4 696 1009 211 525 6.35e-17 85.9
Msa0672550 AT5G43110.1 19.940 331 245 8 689 1009 196 516 5.26e-14 76.6
Msa0672550 AT5G59280.1 21.801 211 161 3 769 979 86 292 2.45e-12 70.1
Msa0672550 AT1G35850.2 22.275 211 160 2 769 979 11 217 9.99e-12 67.0
Msa0672550 AT1G35850.1 25.000 168 123 1 812 979 100 264 1.96e-11 66.6

Find 313 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTAAAATTAAAATTT+TGG 0.042100 4_4:+17657651 Msa0672550:five_prime_UTR
AATTCATCATTCACTAATTA+TGG 0.106420 4_4:+17660648 Msa0672550:CDS
AAATCTATGTATAAACTTAA+AGG 0.196753 4_4:-17663896 None:intergenic
TTTAGGTTGTTTCTGTTATT+AGG 0.204772 4_4:+17658023 Msa0672550:five_prime_UTR
TATTACCTCCTCCACTAAAA+TGG 0.211836 4_4:-17660593 None:intergenic
TGTTTGCTAATTCTCTTCTC+TGG 0.222652 4_4:-17661740 None:intergenic
TCATTTCCCTTGTTCTCTTA+TGG 0.225627 4_4:+17664160 Msa0672550:three_prime_UTR
TTCAGATCATTGTGCCTAAT+TGG 0.235538 4_4:-17661218 None:intergenic
ATAACTTTCTGCTGTGTTGC+AGG 0.238709 4_4:-17662264 None:intergenic
GAATTAGCAAACAAGCTTAT+TGG 0.240600 4_4:+17661750 Msa0672550:CDS
TTAGGTTGTTTCTGTTATTA+GGG 0.246924 4_4:+17658024 Msa0672550:five_prime_UTR
CTTGGAGGTGGTTTGGCTTC+GGG 0.253219 4_4:+17660810 Msa0672550:CDS
CCGGACATGTTGTTGAATTC+AGG 0.255779 4_4:+17661393 Msa0672550:CDS
CACATGTTTCCAGCACCTTT+TGG 0.257902 4_4:-17663482 None:intergenic
CCCTGCTAACTCCTTTATTA+TGG 0.263261 4_4:-17662744 None:intergenic
GAGTTTGCCATTGGACTTCC+TGG 0.265657 4_4:-17661170 None:intergenic
AAAGAGAGTTGAATATATTT+AGG 0.269459 4_4:+17658252 Msa0672550:CDS
AATTGCTGGTGGTGCTCTTC+AGG 0.270283 4_4:+17660881 Msa0672550:CDS
GGCAATAACGAGGGTTGTTT+TGG 0.271807 4_4:+17658161 Msa0672550:CDS
AAATTTATACTCATAATTAA+AGG 0.287208 4_4:-17664127 None:intergenic
GATCTTGTGGCTGCTTTATC+CGG 0.292605 4_4:+17660303 Msa0672550:CDS
TGGGGTGGTGATGGTTTGAT+TGG 0.296056 4_4:+17658692 Msa0672550:CDS
GCATCTCACTGACTAGTATT+TGG 0.297311 4_4:-17662847 None:intergenic
GCCTTCAGATGTATGGTTGC+CGG 0.298563 4_4:+17661790 Msa0672550:CDS
GGTCAATTACCCTAAGGTTT+AGG 0.299499 4_4:+17657523 Msa0672550:five_prime_UTR
GGTGGTTTGGCTTCGGGAGC+TGG 0.301964 4_4:+17660816 Msa0672550:CDS
TCCAATCACCATGGTTACTA+TGG 0.303912 4_4:+17661116 Msa0672550:CDS
GGGTTGTTTGGTGGCGGTGG+TGG 0.308233 4_4:+17658323 Msa0672550:CDS
TCTTGGAGGTGGTTTGGCTT+CGG 0.314631 4_4:+17660809 Msa0672550:CDS
TTGTTTGGTGGCGGTGGTGG+TGG 0.318004 4_4:+17658326 Msa0672550:CDS
GCATGTAGATTCCGGGAATA+TGG 0.319387 4_4:+17661295 Msa0672550:CDS
CAAGCTTCTGTTGAATAAAT+CGG 0.320765 4_4:-17661519 None:intergenic
AGGTTTCAACAAAGGCTTAA+AGG 0.320928 4_4:+17658512 Msa0672550:CDS
AAACATCGGTGGCAGATTAC+TGG 0.323803 4_4:-17660733 None:intergenic
TTATGTATTTCCTAAACCTT+AGG 0.323813 4_4:-17657533 None:intergenic
GTCAGTCCAGATTCATTTAA+CGG 0.325283 4_4:+17660252 Msa0672550:CDS
GATGAATTGGAGAAGGAAAT+AGG 0.331130 4_4:+17658185 Msa0672550:CDS
CCTTCTGATGCGCATAATCT+TGG 0.332029 4_4:+17660843 Msa0672550:CDS
TTGGTTCTTGCAAGAACCTT+AGG 0.336788 4_4:-17657755 None:intergenic
ATAAAGTCGATCGCATCTTC+AGG 0.338577 4_4:-17662060 None:intergenic
GCCTCAGCTGTAGGTGGAAT+TGG 0.339799 4_4:+17658539 Msa0672550:CDS
CTTTGTTGTCAAAGGAAGAT+TGG 0.348632 4_4:+17658489 Msa0672550:CDS
GGAATGGACTCGAGAATTCT+TGG 0.352909 4_4:+17660792 Msa0672550:CDS
GGATGAAAATGAGCCTCTTC+AGG 0.353867 4_4:+17662880 Msa0672550:CDS
TCATCTGCAACACAAAATAT+TGG 0.355905 4_4:+17660075 Msa0672550:CDS
TTTGAGCTCTCTGAAATTGC+CGG 0.357733 4_4:+17661374 Msa0672550:CDS
GGCCATTGAAGTTGTTGATC+TGG 0.361624 4_4:+17661936 Msa0672550:intron
GTAGCTCAGCCTGCCTGTGC+AGG 0.363181 4_4:-17660518 None:intergenic
GTTTGCTAATTCTCTTCTCT+GGG 0.363844 4_4:-17661739 None:intergenic
CAAATGTGAATTTGAATCCT+AGG 0.365913 4_4:+17658456 Msa0672550:CDS
AGAATTCTCGAGTCCATTCC+AGG 0.367598 4_4:-17660789 None:intergenic
TTTGGTGGCGGTGGTGGTGG+TGG 0.370104 4_4:+17658329 Msa0672550:CDS
GTATGGCAACTACGTTGTTC+AGG 0.371359 4_4:+17662329 Msa0672550:CDS
GCACAACTTGGTGGTAAATC+AGG 0.373213 4_4:+17661089 Msa0672550:CDS
GCAGATTACTGGTGCCATAT+TGG 0.375025 4_4:-17660722 None:intergenic
GGAGGGTTGTTTGGTGGCGG+TGG 0.375334 4_4:+17658320 Msa0672550:CDS
ATTCATCATTCACTAATTAT+GGG 0.375856 4_4:+17660649 Msa0672550:CDS
GAAACACCGTTAAATGAATC+TGG 0.376878 4_4:-17660258 None:intergenic
GACCAGAGGTTCTGCTGAAT+GGG 0.378452 4_4:+17658673 Msa0672550:CDS
TCATTTAACGGTGTTTCATC+TGG 0.379811 4_4:+17660264 Msa0672550:CDS
GAGAATTCTTGGAGGTGGTT+TGG 0.380907 4_4:+17660803 Msa0672550:CDS
AATTATGGGCTAAGCGGTTA+TGG 0.381342 4_4:+17660663 Msa0672550:CDS
ATAAAATAATAATAAAATTC+TGG 0.382771 4_4:+17657552 Msa0672550:five_prime_UTR
TTTAAGAATGTTGTCTGAGT+TGG 0.383851 4_4:+17658121 Msa0672550:exon
TCAGGGCATTTGCAAAGTTC+AGG 0.390626 4_4:+17660465 Msa0672550:CDS
TCGAATGCATTACGACTTGC+TGG 0.393224 4_4:-17659997 None:intergenic
AAAGAATCAACTCACGTTGA+TGG 0.394955 4_4:-17663509 None:intergenic
CTCTGTGGACAGGAACTACT+TGG 0.395612 4_4:+17660986 Msa0672550:CDS
ACACTTAGCCTTCAGATGTA+TGG 0.398859 4_4:+17661783 Msa0672550:CDS
GGACCTTGGCATGTAGATTC+CGG 0.398933 4_4:+17661287 Msa0672550:CDS
TTGATTGGTTTGCCTAGCTT+GGG 0.399163 4_4:+17658707 Msa0672550:CDS
TCCTTGATGACTAACCAATA+TGG 0.400215 4_4:+17660708 Msa0672550:CDS
TGCAAATTATGTTGTCCAAA+AGG 0.405660 4_4:+17663467 Msa0672550:CDS
AATGCTGTTGGAGGGTTGTT+TGG 0.406393 4_4:+17658311 Msa0672550:CDS
GTTGGCAGTGCCGATCAATA+TGG 0.408770 4_4:+17661493 Msa0672550:intron
CTTCTTGCCTCCGTTGTTCG+CGG 0.408795 4_4:-17658217 None:intergenic
TTTGATTGGTTTGCCTAGCT+TGG 0.410527 4_4:+17658706 Msa0672550:CDS
GACCTTGGCATGTAGATTCC+GGG 0.412369 4_4:+17661288 Msa0672550:CDS
TGTGCAGGGACAGATTATTA+AGG 0.414026 4_4:-17660503 None:intergenic
TGGTAATTATGTGGTTCAAA+AGG 0.416660 4_4:+17661621 Msa0672550:CDS
TGAGCGTTCTACCATAATAA+AGG 0.420048 4_4:+17662733 Msa0672550:CDS
GCTTTGATGACCGATGTCTT+TGG 0.420200 4_4:+17661601 Msa0672550:CDS
ACATTTCTCCCTCCGCCAAT+AGG 0.420859 4_4:-17660207 None:intergenic
AGTCCATGTCTCACACCTAT+TGG 0.422924 4_4:+17660192 Msa0672550:CDS
GCTCAATATCAGTCTATAGA+TGG 0.428519 4_4:+17660621 Msa0672550:CDS
AAAGCTTTCATCCATATTCC+CGG 0.428951 4_4:-17661306 None:intergenic
TCCATAGTAACCATGGTGAT+TGG 0.434174 4_4:-17661117 None:intergenic
AGACCAGAGGTTCTGCTGAA+TGG 0.434949 4_4:+17658672 Msa0672550:CDS
CGGGAAGGAAGGCCTGTGAC+GGG 0.435937 4_4:-17659973 None:intergenic
TTAAGAATGTTGTCTGAGTT+GGG 0.438319 4_4:+17658122 Msa0672550:exon
ATTGTGCCTAATTGGACTTC+CGG 0.440448 4_4:-17661210 None:intergenic
AAGCTTTGCTTCTTCTCTGT+TGG 0.443609 4_4:+17661322 Msa0672550:CDS
CTTGCAATATGTTGTGGATC+AGG 0.445916 4_4:-17660162 None:intergenic
GGGAAGGAAGGCCTGTGACG+GGG 0.448925 4_4:-17659972 None:intergenic
TCTGCTGAATGGGGTGGTGA+TGG 0.451024 4_4:+17658683 Msa0672550:CDS
ACGGTGTAAAGAGTATAAAA+TGG 0.452374 4_4:+17664000 Msa0672550:three_prime_UTR
GCAGAGTTCGCTCATGTTCA+AGG 0.453542 4_4:+17660051 Msa0672550:CDS
GGTGTTGGGTTGTCTTATCC+AGG 0.455102 4_4:+17661152 Msa0672550:CDS
TACTATGGAAATCCGGCATA+TGG 0.455469 4_4:+17661131 Msa0672550:CDS
GTATTTATAATCCTCATAGA+TGG 0.455914 4_4:+17657724 Msa0672550:five_prime_UTR
ATTGGACTTCCGGATCCAAC+TGG 0.456227 4_4:-17661200 None:intergenic
CGCTGTTAGCATGCTAGCAC+AGG 0.456310 4_4:+17662302 Msa0672550:CDS
ATTACCTCCTCCACTAAAAT+GGG 0.458674 4_4:-17660592 None:intergenic
TATGTATTTCCTAAACCTTA+GGG 0.458701 4_4:-17657532 None:intergenic
ATACGGTTGTCGTGTGATAC+AGG 0.460160 4_4:+17662128 Msa0672550:CDS
CTGTAGGTGGAATTGGAGAT+AGG 0.461781 4_4:+17658546 Msa0672550:CDS
TAACTTTCTGCTGTGTTGCA+GGG 0.468153 4_4:-17662263 None:intergenic
TCTCTATGTCACGCCTAAGC+AGG 0.468281 4_4:-17663744 None:intergenic
TCTGGTTCTCCAGTTGGATC+CGG 0.471107 4_4:+17661191 Msa0672550:CDS
CGGATGGGAAATCAAATTGC+TGG 0.471590 4_4:+17660867 Msa0672550:CDS
ACCATAATAAAGGAGTTAGC+AGG 0.471864 4_4:+17662743 Msa0672550:CDS
ACCCCATTCAGCAGAACCTC+TGG 0.473320 4_4:-17658675 None:intergenic
ACTCATAATTAAAGGACAAA+AGG 0.473520 4_4:-17664119 None:intergenic
ATCTTGTGGCTGCTTTATCC+GGG 0.475055 4_4:+17660304 Msa0672550:CDS
TTGTTTCTGAGGAAGAGCTT+AGG 0.476657 4_4:+17658402 Msa0672550:CDS
TTCAGAGAGCTCAAAACACT+TGG 0.477769 4_4:-17661366 None:intergenic
TCCACCTCCTTTGTTGTCAA+AGG 0.478104 4_4:+17658481 Msa0672550:CDS
CGCTAAATAACAGCATGTAC+TGG 0.478731 4_4:+17662694 Msa0672550:intron
TATTCTTATGCTGCTGCACT+AGG 0.479040 4_4:+17660111 Msa0672550:CDS
TATAATGATAATAAAACAAA+AGG 0.480353 4_4:-17664199 None:intergenic
TTGAAATATGAGTTATTCAA+AGG 0.480789 4_4:-17660555 None:intergenic
GTTGATTCTTTCGCGGATCA+AGG 0.482294 4_4:+17663521 Msa0672550:CDS
TTAACTTTAGGAAGCAAGAA+AGG 0.482450 4_4:+17658630 Msa0672550:CDS
CTGGAATGAGGAACTTAGCT+GGG 0.483970 4_4:+17661258 Msa0672550:CDS
TTGGATCCGGAAGTCCAATT+AGG 0.484418 4_4:+17661204 Msa0672550:CDS
CCTTCAGATGTATGGTTGCC+GGG 0.485940 4_4:+17661791 Msa0672550:CDS
ACTCAACCTGTGATGGCAAA+TGG 0.486010 4_4:-17660353 None:intergenic
TTGAATAACTCATATTTCAA+AGG 0.487092 4_4:+17660558 Msa0672550:CDS
GGTTCTTCGAATGCTGTTGG+AGG 0.487225 4_4:+17658302 Msa0672550:CDS
TGCATTACGACTTGCTGGAC+GGG 0.489902 4_4:-17659992 None:intergenic
TGGTTCTTGCAAGAACCTTA+GGG 0.489919 4_4:-17657754 None:intergenic
TCCTTTGACAACAAAGGAGG+TGG 0.490018 4_4:-17658482 None:intergenic
ATCAAGGATGTCAATGCTGC+AGG 0.490069 4_4:-17660693 None:intergenic
TAATAGTATTGAAGATAAGC+TGG 0.491222 4_4:-17658431 None:intergenic
ACTAGTATTTGGCGTTCTGC+AGG 0.492274 4_4:-17662836 None:intergenic
CCATGGTTACTATGGAAATC+CGG 0.492697 4_4:+17661124 Msa0672550:CDS
CATTCCAGGGGATGCCATCA+TGG 0.493072 4_4:-17660775 None:intergenic
TGAAAACCATTTGCCATCAC+AGG 0.494917 4_4:+17660347 Msa0672550:CDS
TCTCTAGTGTTGGCATTAGT+CGG 0.496543 4_4:+17657491 Msa0672550:five_prime_UTR
TTATGTTGTCCAAAAGGTGC+TGG 0.500111 4_4:+17663473 Msa0672550:CDS
GACTCGAGAATTCTTGGAGG+TGG 0.500582 4_4:+17660798 Msa0672550:CDS
GAGGAACTTAGCTGGGGTCA+TGG 0.500851 4_4:+17661265 Msa0672550:CDS
GGAAATCCGGCATATGGTGT+TGG 0.501027 4_4:+17661137 Msa0672550:CDS
AATTTGAAGCTGGCGGCGAT+TGG 0.502181 4_4:-17657774 None:intergenic
GTTGGAGGGTTGTTTGGTGG+CGG 0.503596 4_4:+17658317 Msa0672550:CDS
GCTGTTGGAGGGTTGTTTGG+TGG 0.504057 4_4:+17658314 Msa0672550:CDS
ATGCTAGCACAGGATCAGTA+TGG 0.504399 4_4:+17662312 Msa0672550:CDS
GGCATTAGTCGGTTATCACT+TGG 0.504425 4_4:+17657502 Msa0672550:five_prime_UTR
AAAGGTGGGGCCTCAGCTGT+AGG 0.506111 4_4:+17658530 Msa0672550:CDS
GCCATATTGGTTAGTCATCA+AGG 0.506645 4_4:-17660709 None:intergenic
CCATTCACATCTTTATTCCC+AGG 0.507605 4_4:-17658377 None:intergenic
GTAGAGAAACTTGTTGCTGC+TGG 0.508762 4_4:+17663597 Msa0672550:CDS
TCACACGACAACCGTATGGA+TGG 0.509025 4_4:-17662122 None:intergenic
CGATGTCTTTGGTAATTATG+TGG 0.509063 4_4:+17661612 Msa0672550:CDS
GCAAACTCTGGTTCTCCAGT+TGG 0.509396 4_4:+17661185 Msa0672550:CDS
GCATCCATGATGGCATCCCC+TGG 0.510554 4_4:+17660771 Msa0672550:CDS
AGGAACTTAGCTGGGGTCAT+GGG 0.510621 4_4:+17661266 Msa0672550:CDS
CGATGTATCTTCAGTATATG+AGG 0.513391 4_4:+17660919 Msa0672550:CDS
AGCTGCAGAAAGCCTACCTC+GGG 0.513740 4_4:+17661033 Msa0672550:CDS
ATCCAGATCAACAACTTCAA+TGG 0.514559 4_4:-17661938 None:intergenic
ACGGGAAGGAAGGCCTGTGA+CGG 0.515589 4_4:-17659974 None:intergenic
CATTCTTCCATAAGAGAACA+AGG 0.517495 4_4:-17664167 None:intergenic
TGCAAAGTTCAGGTAAGAGC+AGG 0.518255 4_4:+17660475 Msa0672550:CDS
TTAATAATCTGTCCCTGCAC+AGG 0.518328 4_4:+17660505 Msa0672550:CDS
CATGATGGCATCCCCTGGAA+TGG 0.518574 4_4:+17660776 Msa0672550:CDS
TAGCTCAGCCTGCCTGTGCA+GGG 0.519401 4_4:-17660517 None:intergenic
CGCGAACAACGGAGGCAAGA+AGG 0.519552 4_4:+17658218 Msa0672550:CDS
TTCAACAAAGGCTTAAAGGT+GGG 0.519587 4_4:+17658516 Msa0672550:CDS
GAGGGTTCTTCGAATGCTGT+TGG 0.520775 4_4:+17658299 Msa0672550:CDS
GGAAGGAAGGCCTGTGACGG+GGG 0.521269 4_4:-17659971 None:intergenic
ATGAAGAAGCAGCTTGCACT+AGG 0.523389 4_4:-17663801 None:intergenic
GACTTGCTGGACGGGAAGGA+AGG 0.525155 4_4:-17659984 None:intergenic
TGCAACACAGCAGAAAGTTA+TGG 0.525725 4_4:+17662266 Msa0672550:CDS
AACAGCATGTACTGGAACAT+GGG 0.530673 4_4:+17662702 Msa0672550:intron
TGCGCATAATCTTGGTCGGA+TGG 0.533905 4_4:+17660851 Msa0672550:CDS
ATGCATTACGACTTGCTGGA+CGG 0.534318 4_4:-17659993 None:intergenic
CGGATCAGCTCCTCCTACTG+TGG 0.534884 4_4:+17658277 Msa0672550:CDS
GGAGAACCAGAGTTTGCCAT+TGG 0.537229 4_4:-17661179 None:intergenic
AACGTGAGTTGATTCTTTCG+CGG 0.537306 4_4:+17663514 Msa0672550:CDS
CCTGAATTCAACAACATGTC+CGG 0.537327 4_4:-17661393 None:intergenic
TTGGGAAGAAGACCAGTGAT+TGG 0.538163 4_4:+17658140 Msa0672550:CDS
TCTGGAATGAGGAACTTAGC+TGG 0.538248 4_4:+17661257 Msa0672550:CDS
CGTTGCCGCTGCATCCATGA+TGG 0.538440 4_4:+17660761 Msa0672550:CDS
TTAACGACCCCTCTGTGGAC+AGG 0.539471 4_4:+17660976 Msa0672550:CDS
GAAATCCGGCATATGGTGTT+GGG 0.539712 4_4:+17661138 Msa0672550:CDS
TCACTTGGTCAATTACCCTA+AGG 0.539892 4_4:+17657517 Msa0672550:five_prime_UTR
TAATCTGTCCCTGCACAGGC+AGG 0.539929 4_4:+17660509 Msa0672550:CDS
AACAAAGGAGGTGGAAGCCT+AGG 0.542530 4_4:-17658473 None:intergenic
GGTGGTGGTGGTGTTGCTGG+TGG 0.542676 4_4:+17658341 Msa0672550:CDS
GAGATGGTTAAAGAGCTTGA+TGG 0.544811 4_4:+17661970 Msa0672550:CDS
CCTGGGAATAAAGATGTGAA+TGG 0.545695 4_4:+17658377 Msa0672550:CDS
TAGCTGGGGTCATGGGACCT+TGG 0.546671 4_4:+17661273 Msa0672550:CDS
TGTTGTCAAAGGAAGATTGG+AGG 0.547757 4_4:+17658492 Msa0672550:CDS
GAAGCAAGAAAGGAGTGAGG+TGG 0.548502 4_4:+17658640 Msa0672550:CDS
CCCTCGTTATTGCCAATCAC+TGG 0.550459 4_4:-17658152 None:intergenic
GGAATTGGAGATAGGAGGAA+AGG 0.551298 4_4:+17658554 Msa0672550:CDS
ATACTAGTCAGTGAGATGCT+TGG 0.551333 4_4:+17662851 Msa0672550:CDS
ATCAGCTCCTCCTACTGTGG+AGG 0.551480 4_4:+17658280 Msa0672550:CDS
TAACAGCATGTACTGGAACA+TGG 0.552212 4_4:+17662701 Msa0672550:intron
TCACAGTACAATGCACAACT+TGG 0.552843 4_4:+17661077 Msa0672550:CDS
TTCAATCAGCGGAAACACAT+AGG 0.554613 4_4:-17663830 None:intergenic
AGGAGAGAGGAATTTGAAGC+TGG 0.555109 4_4:-17657784 None:intergenic
GCGCATAATCTTGGTCGGAT+GGG 0.557947 4_4:+17660852 Msa0672550:CDS
CAGACACTTCTCCACAACAT+TGG 0.558684 4_4:-17662801 None:intergenic
CAATCTTCCTTTGACAACAA+AGG 0.558768 4_4:-17658488 None:intergenic
ACACTTCTCCACAACATTGG+AGG 0.559112 4_4:-17662798 None:intergenic
GCGTTCTGCAGGACCACTGA+AGG 0.559249 4_4:-17662825 None:intergenic
GTTCTTCGAATGCTGTTGGA+GGG 0.560600 4_4:+17658303 Msa0672550:CDS
GCAGCATAAGAATATGAAGC+TGG 0.563611 4_4:-17660102 None:intergenic
TAAAGTCGATCGCATCTTCA+GGG 0.565024 4_4:-17662059 None:intergenic
TTGCTTCTAAGTCCCAAGCT+AGG 0.565095 4_4:-17658719 None:intergenic
TCAGACTCCTCAACCTGCTT+AGG 0.568481 4_4:+17663731 Msa0672550:CDS
CCATGTCTCACACCTATTGG+CGG 0.568595 4_4:+17660195 Msa0672550:CDS
TTCCCGGAATCTACATGCCA+AGG 0.568700 4_4:-17661290 None:intergenic
AAGATTGGAGGTTTCAACAA+AGG 0.569404 4_4:+17658504 Msa0672550:CDS
TCAACAAAGGCTTAAAGGTG+GGG 0.569868 4_4:+17658517 Msa0672550:CDS
CTGATCCACAACATATTGCA+AGG 0.570840 4_4:+17660163 Msa0672550:CDS
ACTGATTGTGACAAAAGTTG+AGG 0.571111 4_4:-17657835 None:intergenic
GGAAGTCCAATGGCAAACTC+TGG 0.573092 4_4:+17661173 Msa0672550:CDS
TGTCTCACACCTATTGGCGG+AGG 0.573681 4_4:+17660198 Msa0672550:CDS
TGTTGTTGCAGAGAGAAGAA+TGG 0.573757 4_4:+17663704 Msa0672550:intron
TTCTGCTGACAAGTTCATCC+CGG 0.574635 4_4:-17660322 None:intergenic
CAGTACAATGCACAACTTGG+TGG 0.574796 4_4:+17661080 Msa0672550:CDS
CTGATGCGCATAATCTTGGT+CGG 0.575600 4_4:+17660847 Msa0672550:CDS
GACAACCCAACACCATATGC+CGG 0.575951 4_4:-17661143 None:intergenic
AAGTAGTTCCTGTCCACAGA+GGG 0.576360 4_4:-17660984 None:intergenic
TGTATCACACGACAACCGTA+TGG 0.576443 4_4:-17662126 None:intergenic
AGATACATCGGATCAACAAA+CGG 0.577913 4_4:-17660906 None:intergenic
GGATGCCATCATGGATGCAG+CGG 0.578490 4_4:-17660766 None:intergenic
GGAGCCCTTGCAATATGTTG+TGG 0.578921 4_4:-17660168 None:intergenic
ACAAAAGTTGAGGTTAAGAA+TGG 0.579050 4_4:-17657825 None:intergenic
CCCGGCAACCATACATCTGA+AGG 0.580730 4_4:-17661791 None:intergenic
TGGTTGCCGGGTTATTCAGA+AGG 0.581227 4_4:+17661803 Msa0672550:CDS
CCAAGATTATGCGCATCAGA+AGG 0.581725 4_4:-17660843 None:intergenic
GAAGAACCCTCCACAGTAGG+AGG 0.582463 4_4:-17658287 None:intergenic
AAATCGGCTTCCATATTGAT+CGG 0.582623 4_4:-17661503 None:intergenic
TCTTATGCTGCTGCACTAGG+AGG 0.584290 4_4:+17660114 Msa0672550:CDS
CAGTGAGATGCTTGGAACCA+CGG 0.584655 4_4:+17662859 Msa0672550:CDS
TGCTTCCTAAAGTTAAAACC+AGG 0.584967 4_4:-17658623 None:intergenic
ACATCAGACTCAACCTGTGA+TGG 0.587173 4_4:-17660360 None:intergenic
GAGCTGCAGAAAGCCTACCT+CGG 0.589123 4_4:+17661032 Msa0672550:CDS
CCATAATAAAGGAGTTAGCA+GGG 0.589588 4_4:+17662744 Msa0672550:CDS
TTACGACTTGCTGGACGGGA+AGG 0.592541 4_4:-17659988 None:intergenic
TCAGCTCCTCCTACTGTGGA+GGG 0.593400 4_4:+17658281 Msa0672550:CDS
GAATGTTGCTCCGCGAACAA+CGG 0.594205 4_4:+17658207 Msa0672550:CDS
TGTGAATGGTGTTGTTTCTG+AGG 0.595945 4_4:+17658391 Msa0672550:CDS
AAAGTTTGCCTCCAATGTTG+TGG 0.596529 4_4:+17662790 Msa0672550:CDS
CACACGACAACCGTATGGAT+GGG 0.596629 4_4:-17662121 None:intergenic
ATAGATGGAACAAAACCCTA+AGG 0.596696 4_4:+17657739 Msa0672550:five_prime_UTR
GAACGAGTCAGCAGATCTTG+TGG 0.598330 4_4:+17660290 Msa0672550:CDS
GAGAAGTGTCTGACCTTCAG+TGG 0.600770 4_4:+17662812 Msa0672550:CDS
CTCATATACTGAAGATACAT+CGG 0.602572 4_4:-17660918 None:intergenic
TGTCACGCCTAAGCAGGTTG+AGG 0.603224 4_4:-17663738 None:intergenic
TGCGACGATGTGCTTTCCAT+AGG 0.603355 4_4:-17663571 None:intergenic
GGTGGGGCCTCAGCTGTAGG+TGG 0.603539 4_4:+17658533 Msa0672550:CDS
CGAGAGAACAGACCCGAGGT+AGG 0.604952 4_4:-17661045 None:intergenic
GAATTCTCGAGTCCATTCCA+GGG 0.606282 4_4:-17660788 None:intergenic
CCGCCAATAGGTGTGAGACA+TGG 0.607911 4_4:-17660195 None:intergenic
AGAGAGGAATTTGAAGCTGG+CGG 0.608775 4_4:-17657781 None:intergenic
ATGGACTCGAGAATTCTTGG+AGG 0.608966 4_4:+17660795 Msa0672550:CDS
TATGGGCTAAGCGGTTATGG+TGG 0.609285 4_4:+17660666 Msa0672550:CDS
CATAGATTTCAAGCAAGATG+AGG 0.609826 4_4:+17663910 Msa0672550:three_prime_UTR
ATAGGTGTGAGACATGGACT+AGG 0.610983 4_4:-17660189 None:intergenic
ATGCAGGGTGGTCAAGAGCA+CGG 0.614674 4_4:+17660411 Msa0672550:CDS
GTCATCAAAGCAAGAGCATG+TGG 0.615784 4_4:-17661589 None:intergenic
ACCAGTGATTGGCAATAACG+AGG 0.616587 4_4:+17658151 Msa0672550:CDS
GTCTCACACCTATTGGCGGA+GGG 0.618213 4_4:+17660199 Msa0672550:CDS
ACACTCTCAACCCATCCATA+CGG 0.618697 4_4:+17662111 Msa0672550:CDS
TCCAATTCCACCTACAGCTG+AGG 0.621356 4_4:-17658540 None:intergenic
GTCTTATCCAGGAAGTCCAA+TGG 0.621556 4_4:+17661163 Msa0672550:CDS
CCGGATTTCCATAGTAACCA+TGG 0.622461 4_4:-17661124 None:intergenic
CCTCCACTAAAATGGGAGGT+AGG 0.624243 4_4:-17660585 None:intergenic
TTTGCTAATTCTCTTCTCTG+GGG 0.624320 4_4:-17661738 None:intergenic
TAGGTGGAATTGGAGATAGG+AGG 0.626161 4_4:+17658549 Msa0672550:CDS
TTCACTAATTATGGGCTAAG+CGG 0.626220 4_4:+17660657 Msa0672550:CDS
CGTTGTGTTCGTGATCAGAA+TGG 0.627328 4_4:+17662003 Msa0672550:CDS
GGTAACATGACTGATGATAG+TGG 0.627522 4_4:+17658575 Msa0672550:CDS
TGATCCACAACATATTGCAA+GGG 0.637872 4_4:+17660164 Msa0672550:CDS
TCAATACCTTCTGAATAACC+CGG 0.639404 4_4:-17661809 None:intergenic
AATGTCTCTTCTGACAAGAG+AGG 0.640214 4_4:+17660225 Msa0672550:CDS
CACATAATTACCAAAGACAT+CGG 0.640601 4_4:-17661611 None:intergenic
ACCAGAGGTTCTGCTGAATG+GGG 0.641423 4_4:+17658674 Msa0672550:CDS
ATTATGGTAGAACGCTCATG+AGG 0.642626 4_4:-17662728 None:intergenic
TTTCAACAAAGGCTTAAAGG+TGG 0.643542 4_4:+17658515 Msa0672550:CDS
TGTTGCTCCGCGAACAACGG+AGG 0.644937 4_4:+17658210 Msa0672550:CDS
TTCGAAGAACCCTCCACAGT+AGG 0.646124 4_4:-17658290 None:intergenic
TCTCTTATGGAAGAATGTGA+CGG 0.646472 4_4:+17664173 Msa0672550:three_prime_UTR
TCTTCCTTTGACAACAAAGG+AGG 0.647413 4_4:-17658485 None:intergenic
GAGAAACTTGTTGCTGCTGG+AGG 0.648155 4_4:+17663600 Msa0672550:CDS
ACCTCCTCCACTAAAATGGG+AGG 0.649721 4_4:-17660589 None:intergenic
TGCTCTTAACGACCCCTCTG+TGG 0.649843 4_4:+17660971 Msa0672550:CDS
CCAGTGATTGGCAATAACGA+GGG 0.651439 4_4:+17658152 Msa0672550:CDS
GTAAAGAGTATAAAATGGTG+AGG 0.656250 4_4:+17664005 Msa0672550:three_prime_UTR
TCTGGATCAGAAAATAGAGA+TGG 0.657851 4_4:+17661954 Msa0672550:CDS
GAGTTGAATATATTTAGGAG+CGG 0.659139 4_4:+17658257 Msa0672550:CDS
TCTGTGGACAGGAACTACTT+GGG 0.660127 4_4:+17660987 Msa0672550:CDS
AAAGCAATCAATAATTAACA+AGG 0.662281 4_4:-17657876 None:intergenic
GAAGGCTAAGTGTAAGAACA+TGG 0.665988 4_4:-17661773 None:intergenic
GAGGCGAGAGAACAGACCCG+AGG 0.669263 4_4:-17661049 None:intergenic
TTCCTAAAGTTAAAACCAGG+TGG 0.674057 4_4:-17658620 None:intergenic
TGGAATGAGGAACTTAGCTG+GGG 0.676254 4_4:+17661259 Msa0672550:CDS
AGAGGTTCTGCTGAATGGGG+TGG 0.677430 4_4:+17658677 Msa0672550:CDS
TAGGAAGCAAGAAAGGAGTG+AGG 0.692795 4_4:+17658637 Msa0672550:CDS
TCAGGCAACTCCAATCACCA+TGG 0.695180 4_4:+17661107 Msa0672550:CDS
AATTCTCGAGTCCATTCCAG+GGG 0.695829 4_4:-17660787 None:intergenic
ATGGGAAATCAAATTGCTGG+TGG 0.697193 4_4:+17660870 Msa0672550:CDS
ATTCTTCCATAAGAGAACAA+GGG 0.697834 4_4:-17664166 None:intergenic
GTGGAGAATGAAAAGACCAG+AGG 0.704282 4_4:+17658659 Msa0672550:CDS
CAAGTAGTTCCTGTCCACAG+AGG 0.711575 4_4:-17660985 None:intergenic
TGACTGATGATAGTGGTGGT+AGG 0.714880 4_4:+17658582 Msa0672550:CDS
GAGGACGTCAGAGTATGCTG+CGG 0.731637 4_4:+17660938 Msa0672550:CDS
AGTAGTTCCTGTCCACAGAG+GGG 0.733621 4_4:-17660983 None:intergenic
AACATGACTGATGATAGTGG+TGG 0.782556 4_4:+17658578 Msa0672550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATACTCATAATTAA+AGG - chr4_4:17664130-17664149 None:intergenic 10.0%
!!! TAAAATTAAAATTTTGGGTT+TGG + chr4_4:17657657-17657676 Msa0672550:five_prime_UTR 15.0%
!!! TTAAGAAAGTTTGAATTTTT+AGG + chr4_4:17658006-17658025 Msa0672550:five_prime_UTR 15.0%
!!! ATTAATCAAAAATTTAGAAC+AGG - chr4_4:17659050-17659069 None:intergenic 15.0%
!! TATTATAATAAACTACTTTC+AGG + chr4_4:17659391-17659410 Msa0672550:intron 15.0%
!!! TTTAAATTTTCAGTTACATA+TGG + chr4_4:17659754-17659773 Msa0672550:intron 15.0%
!!! TTTAAATTTTCAGTTACTTT+TGG + chr4_4:17659856-17659875 Msa0672550:intron 15.0%
!! ATTCAAGAAAATAATAGAAA+AGG - chr4_4:17661872-17661891 None:intergenic 15.0%
!! TAAAAGTAAAAAAAAGTCAA+GGG - chr4_4:17663090-17663109 None:intergenic 15.0%
!! TTAAAAGTAAAAAAAAGTCA+AGG - chr4_4:17663091-17663110 None:intergenic 15.0%
!!! TTTTTTTTACTTTTAACACT+TGG + chr4_4:17663095-17663114 Msa0672550:intron 15.0%
!! AAATCTATGTATAAACTTAA+AGG - chr4_4:17663899-17663918 None:intergenic 15.0%
!!! ATGAGTATAAATTTTCTTTA+AGG + chr4_4:17664136-17664155 Msa0672550:three_prime_UTR 15.0%
!! AAAGCAATCAATAATTAACA+AGG - chr4_4:17657879-17657898 None:intergenic 20.0%
!!! TATTAGGGTTTGATAATTTT+TGG + chr4_4:17658039-17658058 Msa0672550:five_prime_UTR 20.0%
!! AAAGAGAGTTGAATATATTT+AGG + chr4_4:17658252-17658271 Msa0672550:CDS 20.0%
!!! ATTGCAATTCTTTTGATTAA+TGG + chr4_4:17659071-17659090 Msa0672550:intron 20.0%
!!! CTAACATTTTAGTTTTATGT+TGG + chr4_4:17659256-17659275 Msa0672550:intron 20.0%
!!! GATTCAGAATTTTTTAGATA+TGG - chr4_4:17660447-17660466 None:intergenic 20.0%
!! TATCTAAAAAATTCTGAATC+AGG + chr4_4:17660447-17660466 Msa0672550:CDS 20.0%
!! ATCTAAAAAATTCTGAATCA+GGG + chr4_4:17660448-17660467 Msa0672550:CDS 20.0%
!! TTGAAATATGAGTTATTCAA+AGG - chr4_4:17660558-17660577 None:intergenic 20.0%
!! TTGAATAACTCATATTTCAA+AGG + chr4_4:17660558-17660577 Msa0672550:CDS 20.0%
!! AATTCATCATTCACTAATTA+TGG + chr4_4:17660648-17660667 Msa0672550:CDS 20.0%
!! ATTCATCATTCACTAATTAT+GGG + chr4_4:17660649-17660668 Msa0672550:CDS 20.0%
!! GGTAAAAATTATTATTCTCT+CGG + chr4_4:17661642-17661661 Msa0672550:intron 20.0%
!!! ATAATAAAAAACCTTTTGCA+TGG + chr4_4:17662214-17662233 Msa0672550:intron 20.0%
!!! ATGTATTACTCATCAATTTT+AGG + chr4_4:17662927-17662946 Msa0672550:intron 20.0%
!! GGATTTAAAAATGTATATTG+TGG - chr4_4:17662960-17662979 None:intergenic 20.0%
!!! CTTTTTCTTTATCAAATGTA+CGG + chr4_4:17664088-17664107 Msa0672550:three_prime_UTR 20.0%
! TATGTATTTCCTAAACCTTA+GGG - chr4_4:17657535-17657554 None:intergenic 25.0%
! TTATGTATTTCCTAAACCTT+AGG - chr4_4:17657536-17657555 None:intergenic 25.0%
!!! TTAAAATTTTGGGTTTGGTT+TGG + chr4_4:17657662-17657681 Msa0672550:five_prime_UTR 25.0%
! GTATTTATAATCCTCATAGA+TGG + chr4_4:17657724-17657743 Msa0672550:five_prime_UTR 25.0%
!!! TTTAGGTTGTTTCTGTTATT+AGG + chr4_4:17658023-17658042 Msa0672550:five_prime_UTR 25.0%
!!! TTAGGTTGTTTCTGTTATTA+GGG + chr4_4:17658024-17658043 Msa0672550:five_prime_UTR 25.0%
!! TAATAGTATTGAAGATAAGC+TGG - chr4_4:17658434-17658453 None:intergenic 25.0%
!!! TTCATTTGTTTTTTTCTGCT+GGG + chr4_4:17658894-17658913 Msa0672550:intron 25.0%
! TTCATATCATTCTATCTGTT+TGG + chr4_4:17658987-17659006 Msa0672550:intron 25.0%
! TCACAATGAGCTATAAATAA+TGG - chr4_4:17659136-17659155 None:intergenic 25.0%
! TTATTTATAGCTCATTGTGA+TGG + chr4_4:17659136-17659155 Msa0672550:intron 25.0%
!! CACTAATGTTCTTTTATGAT+CGG + chr4_4:17659219-17659238 Msa0672550:intron 25.0%
! ACTAAAATGTTAGATACTAC+AGG - chr4_4:17659249-17659268 None:intergenic 25.0%
!! GTATATGTTTATATTGGTCT+TGG + chr4_4:17659504-17659523 Msa0672550:intron 25.0%
! TTTCAGTTACATATGGAAAT+TGG + chr4_4:17659761-17659780 Msa0672550:intron 25.0%
!! AATCATCAGAGATATCTTTT+TGG + chr4_4:17660387-17660406 Msa0672550:CDS 25.0%
! AACTACAGAAGAAAAAAACA+TGG + chr4_4:17661549-17661568 Msa0672550:CDS 25.0%
! AGAAAAAAACATGGTTTATC+AGG + chr4_4:17661558-17661577 Msa0672550:CDS 25.0%
!! TTATGTGACAAATGAGTTTT+AGG - chr4_4:17662198-17662217 None:intergenic 25.0%
! AAACAACAAAAAATTCCAGT+AGG - chr4_4:17662379-17662398 None:intergenic 25.0%
!! TTGGTTCTTCAAATATGATA+TGG + chr4_4:17662539-17662558 Msa0672550:intron 25.0%
! TGGTTCTTCAAATATGATAT+GGG + chr4_4:17662540-17662559 Msa0672550:intron 25.0%
!! TCAAATATGATATGGGTTTT+TGG + chr4_4:17662547-17662566 Msa0672550:intron 25.0%
!! TTGATATTATACCTAGTCTT+AGG + chr4_4:17662996-17663015 Msa0672550:intron 25.0%
! AAAACATCATAACTGAACAA+CGG - chr4_4:17663378-17663397 None:intergenic 25.0%
! TTACAACGATAGAATAAGAA+TGG - chr4_4:17663643-17663662 None:intergenic 25.0%
!!! ACAACTTTATTTTCAATCAG+CGG - chr4_4:17663844-17663863 None:intergenic 25.0%
! ACTCATAATTAAAGGACAAA+AGG - chr4_4:17664122-17664141 None:intergenic 25.0%
!!! TTTTTTTCTCTCTCTAGTGT+TGG + chr4_4:17657481-17657500 Msa0672550:five_prime_UTR 30.0%
ACAAAAGTTGAGGTTAAGAA+TGG - chr4_4:17657828-17657847 None:intergenic 30.0%
! GCTGAAAGTTGGAATTTTTA+TGG + chr4_4:17657960-17657979 Msa0672550:five_prime_UTR 30.0%
!! TAGGGTTTGATAATTTTTGG+TGG + chr4_4:17658042-17658061 Msa0672550:five_prime_UTR 30.0%
!!! AGGGTTTGATAATTTTTGGT+GGG + chr4_4:17658043-17658062 Msa0672550:five_prime_UTR 30.0%
! GTTTTATGTGTGTTAGTGTT+TGG + chr4_4:17658080-17658099 Msa0672550:five_prime_UTR 30.0%
TTTAAGAATGTTGTCTGAGT+TGG + chr4_4:17658121-17658140 Msa0672550:exon 30.0%
TTAAGAATGTTGTCTGAGTT+GGG + chr4_4:17658122-17658141 Msa0672550:exon 30.0%
GAGTTGAATATATTTAGGAG+CGG + chr4_4:17658257-17658276 Msa0672550:CDS 30.0%
CAAATGTGAATTTGAATCCT+AGG + chr4_4:17658456-17658475 Msa0672550:CDS 30.0%
! TTAACTTTAGGAAGCAAGAA+AGG + chr4_4:17658630-17658649 Msa0672550:CDS 30.0%
!!! TTTGTTGTTTTCTGCTGTTA+AGG + chr4_4:17658839-17658858 Msa0672550:intron 30.0%
!!! GTTCATTTGTTTTTTTCTGC+TGG + chr4_4:17658893-17658912 Msa0672550:intron 30.0%
!!! GATGGTACTTTTGCTATTTA+AGG + chr4_4:17658924-17658943 Msa0672550:intron 30.0%
!! TTTGCTATTTAAGGCTGTAT+TGG + chr4_4:17658933-17658952 Msa0672550:intron 30.0%
TAACTGACAATATGCATCTT+TGG + chr4_4:17659099-17659118 Msa0672550:intron 30.0%
AGCATATCATTCAATGCATT+CGG + chr4_4:17659166-17659185 Msa0672550:intron 30.0%
CGATCATAAAAGAACATTAG+TGG - chr4_4:17659221-17659240 None:intergenic 30.0%
GGCAGAGTATATGTTTATAT+TGG + chr4_4:17659498-17659517 Msa0672550:intron 30.0%
GAGAAGAGTTTGAATAACAA+GGG - chr4_4:17659694-17659713 None:intergenic 30.0%
AGAGAAGAGTTTGAATAACA+AGG - chr4_4:17659695-17659714 None:intergenic 30.0%
! ATTTATTTGTTGACCTGTAG+AGG + chr4_4:17659785-17659804 Msa0672550:intron 30.0%
AAAATTGTATTTGCCTCTAC+AGG - chr4_4:17659801-17659820 None:intergenic 30.0%
!!! TTTCAGTTACTTTTGGTAAC+TGG + chr4_4:17659863-17659882 Msa0672550:intron 30.0%
ATATCATCCTGCAAAATTAC+CGG - chr4_4:17659940-17659959 None:intergenic 30.0%
TCATCTGCAACACAAAATAT+TGG + chr4_4:17660075-17660094 Msa0672550:CDS 30.0%
!! AGATATCTTTTTGGTATGCA+GGG + chr4_4:17660396-17660415 Msa0672550:CDS 30.0%
CTCATATACTGAAGATACAT+CGG - chr4_4:17660921-17660940 None:intergenic 30.0%
CAAGCTTCTGTTGAATAAAT+CGG - chr4_4:17661522-17661541 None:intergenic 30.0%
CACATAATTACCAAAGACAT+CGG - chr4_4:17661614-17661633 None:intergenic 30.0%
TGGTAATTATGTGGTTCAAA+AGG + chr4_4:17661621-17661640 Msa0672550:CDS 30.0%
!! CGGTTTATCATTCTTTTTCA+TGG + chr4_4:17661662-17661681 Msa0672550:intron 30.0%
!! ATCATTCTTTTTCATGGATC+TGG + chr4_4:17661668-17661687 Msa0672550:intron 30.0%
GAATTAGCAAACAAGCTTAT+TGG + chr4_4:17661750-17661769 Msa0672550:CDS 30.0%
!! TCAGAAGGTATTGATGATTT+AGG + chr4_4:17661818-17661837 Msa0672550:intron 30.0%
!! AAGGTATTGATGATTTAGGT+TGG + chr4_4:17661822-17661841 Msa0672550:intron 30.0%
TAAAGAGAGTCCATATTGAA+AGG - chr4_4:17661916-17661935 None:intergenic 30.0%
TTTCAATATGGACTCTCTTT+AGG + chr4_4:17661915-17661934 Msa0672550:intron 30.0%
! AAAGTTATGGACGAGATTTT+AGG + chr4_4:17662279-17662298 Msa0672550:CDS 30.0%
! CATTTTTAAATCCACTGTCT+CGG + chr4_4:17662967-17662986 Msa0672550:intron 30.0%
! ATGATTTGAAACCTAAGACT+AGG - chr4_4:17663010-17663029 None:intergenic 30.0%
AGTAAAAAAAAGTCAAGGGA+TGG - chr4_4:17663086-17663105 None:intergenic 30.0%
CAAGAACGAATATGTGATAT+TGG - chr4_4:17663267-17663286 None:intergenic 30.0%
CAAAGAATTATAAGGATGGT+TGG - chr4_4:17663295-17663314 None:intergenic 30.0%
CAGTCAAAGAATTATAAGGA+TGG - chr4_4:17663299-17663318 None:intergenic 30.0%
CATCCTTATAATTCTTTGAC+TGG + chr4_4:17663297-17663316 Msa0672550:intron 30.0%
CAACCAGTCAAAGAATTATA+AGG - chr4_4:17663303-17663322 None:intergenic 30.0%
! ATTTTGCATAACATACGAAG+AGG - chr4_4:17663401-17663420 None:intergenic 30.0%
TGCAAATTATGTTGTCCAAA+AGG + chr4_4:17663467-17663486 Msa0672550:CDS 30.0%
! GCATTGAAAAAGTATACCTA+TGG + chr4_4:17663555-17663574 Msa0672550:CDS 30.0%
AAGAATGGAAAGGATTAGAT+AGG - chr4_4:17663628-17663647 None:intergenic 30.0%
ACGATAGAATAAGAATGGAA+AGG - chr4_4:17663638-17663657 None:intergenic 30.0%
GTAATCACATCACATGTTAA+TGG + chr4_4:17663659-17663678 Msa0672550:intron 30.0%
GCAACAACAAATTACATGAA+CGG - chr4_4:17663693-17663712 None:intergenic 30.0%
! ATATTTTCATCTTCTCTGCA+GGG - chr4_4:17663947-17663966 None:intergenic 30.0%
! ACGGTGTAAAGAGTATAAAA+TGG + chr4_4:17664000-17664019 Msa0672550:three_prime_UTR 30.0%
! GTAAAGAGTATAAAATGGTG+AGG + chr4_4:17664005-17664024 Msa0672550:three_prime_UTR 30.0%
TGTACAAAAATGATGCTATG+TGG + chr4_4:17664048-17664067 Msa0672550:three_prime_UTR 30.0%
ATTCTTCCATAAGAGAACAA+GGG - chr4_4:17664169-17664188 None:intergenic 30.0%
!! TTTTGTTGGGTTTGGGTTTT+TGG + chr4_4:17657685-17657704 Msa0672550:five_prime_UTR 35.0%
ATAGATGGAACAAAACCCTA+AGG + chr4_4:17657739-17657758 Msa0672550:five_prime_UTR 35.0%
TAAAGAGAAAAAGAGGAGAG+AGG - chr4_4:17657800-17657819 None:intergenic 35.0%
GGTGCAATAAAGAGAAAAAG+AGG - chr4_4:17657807-17657826 None:intergenic 35.0%
ACTGATTGTGACAAAAGTTG+AGG - chr4_4:17657838-17657857 None:intergenic 35.0%
!! TGCTTTTAGTTGCTGAAAGT+TGG + chr4_4:17657949-17657968 Msa0672550:five_prime_UTR 35.0%
!!! TTTTGGTGATGAATTGGAGA+AGG + chr4_4:17658178-17658197 Msa0672550:CDS 35.0%
GATGAATTGGAGAAGGAAAT+AGG + chr4_4:17658185-17658204 Msa0672550:CDS 35.0%
!! GTGGTTTTTCAGATTTTCCT+GGG + chr4_4:17658360-17658379 Msa0672550:CDS 35.0%
CAATCTTCCTTTGACAACAA+AGG - chr4_4:17658491-17658510 None:intergenic 35.0%
! CTTTGTTGTCAAAGGAAGAT+TGG + chr4_4:17658489-17658508 Msa0672550:CDS 35.0%
AAGATTGGAGGTTTCAACAA+AGG + chr4_4:17658504-17658523 Msa0672550:CDS 35.0%
AGGTTTCAACAAAGGCTTAA+AGG + chr4_4:17658512-17658531 Msa0672550:CDS 35.0%
TTTCAACAAAGGCTTAAAGG+TGG + chr4_4:17658515-17658534 Msa0672550:CDS 35.0%
TTCAACAAAGGCTTAAAGGT+GGG + chr4_4:17658516-17658535 Msa0672550:CDS 35.0%
TTCCTAAAGTTAAAACCAGG+TGG - chr4_4:17658623-17658642 None:intergenic 35.0%
TGCTTCCTAAAGTTAAAACC+AGG - chr4_4:17658626-17658645 None:intergenic 35.0%
CTACCTGAAAAATTTCAGCA+AGG - chr4_4:17658754-17658773 None:intergenic 35.0%
! TTGTTTTCTGCTGTTAAGGT+TGG + chr4_4:17658843-17658862 Msa0672550:intron 35.0%
!!! CAATATGCATCTTTGGCTTT+TGG + chr4_4:17659106-17659125 Msa0672550:intron 35.0%
! ATAGCTCATTGTGATGGAAA+TGG + chr4_4:17659142-17659161 Msa0672550:intron 35.0%
CATGTCAAATGCTTTATGTG+CGG - chr4_4:17659337-17659356 None:intergenic 35.0%
TATATCCTATACAACCCAAG+TGG - chr4_4:17659417-17659436 None:intergenic 35.0%
! TTTTATACCTCTCAGTGTTG+AGG + chr4_4:17659477-17659496 Msa0672550:intron 35.0%
!! TGGTCTTGGAGAATATGTTT+TGG + chr4_4:17659518-17659537 Msa0672550:intron 35.0%
TAATGCACTAGCAGAAAAAC+AGG + chr4_4:17659612-17659631 Msa0672550:intron 35.0%
! GGTAATTTTGCAGGATGATA+TGG + chr4_4:17659939-17659958 Msa0672550:intron 35.0%
TGATCCACAACATATTGCAA+GGG + chr4_4:17660164-17660183 Msa0672550:CDS 35.0%
GTCAGTCCAGATTCATTTAA+CGG + chr4_4:17660252-17660271 Msa0672550:CDS 35.0%
GAAACACCGTTAAATGAATC+TGG - chr4_4:17660261-17660280 None:intergenic 35.0%
TCATTTAACGGTGTTTCATC+TGG + chr4_4:17660264-17660283 Msa0672550:CDS 35.0%
!! GAGATATCTTTTTGGTATGC+AGG + chr4_4:17660395-17660414 Msa0672550:CDS 35.0%
ATTACCTCCTCCACTAAAAT+GGG - chr4_4:17660595-17660614 None:intergenic 35.0%
TATTACCTCCTCCACTAAAA+TGG - chr4_4:17660596-17660615 None:intergenic 35.0%
GCTCAATATCAGTCTATAGA+TGG + chr4_4:17660621-17660640 Msa0672550:CDS 35.0%
! TTCACTAATTATGGGCTAAG+CGG + chr4_4:17660657-17660676 Msa0672550:CDS 35.0%
! TCCTTGATGACTAACCAATA+TGG + chr4_4:17660708-17660727 Msa0672550:CDS 35.0%
AGATACATCGGATCAACAAA+CGG - chr4_4:17660909-17660928 None:intergenic 35.0%
CGATGTATCTTCAGTATATG+AGG + chr4_4:17660919-17660938 Msa0672550:CDS 35.0%
TTCAGATCATTGTGCCTAAT+TGG - chr4_4:17661221-17661240 None:intergenic 35.0%
AAAGCTTTCATCCATATTCC+CGG - chr4_4:17661309-17661328 None:intergenic 35.0%
! AAATCGGCTTCCATATTGAT+CGG - chr4_4:17661506-17661525 None:intergenic 35.0%
! CGATGTCTTTGGTAATTATG+TGG + chr4_4:17661612-17661631 Msa0672550:CDS 35.0%
AACTGCAAGATATCAACTAC+TGG - chr4_4:17661699-17661718 None:intergenic 35.0%
!!! ATCTTGCAGTTTTTTGAGCA+TGG + chr4_4:17661708-17661727 Msa0672550:intron 35.0%
TTTGCTAATTCTCTTCTCTG+GGG - chr4_4:17661741-17661760 None:intergenic 35.0%
! GTTTGCTAATTCTCTTCTCT+GGG - chr4_4:17661742-17661761 None:intergenic 35.0%
! TGTTTGCTAATTCTCTTCTC+TGG - chr4_4:17661743-17661762 None:intergenic 35.0%
TCAATACCTTCTGAATAACC+CGG - chr4_4:17661812-17661831 None:intergenic 35.0%
TTTCCTCTGTCCTTTCAATA+TGG + chr4_4:17661903-17661922 Msa0672550:intron 35.0%
ATCCAGATCAACAACTTCAA+TGG - chr4_4:17661941-17661960 None:intergenic 35.0%
TCTGGATCAGAAAATAGAGA+TGG + chr4_4:17661954-17661973 Msa0672550:CDS 35.0%
TAGCAAACACTGTAATGTTC+TGG - chr4_4:17662603-17662622 None:intergenic 35.0%
CGCTTCCTTTGATATACATA+CGG + chr4_4:17662624-17662643 Msa0672550:intron 35.0%
GCATACCGTATGTATATCAA+AGG - chr4_4:17662632-17662651 None:intergenic 35.0%
! CAGTACATGCTGTTATTTAG+CGG - chr4_4:17662696-17662715 None:intergenic 35.0%
TGAGCGTTCTACCATAATAA+AGG + chr4_4:17662733-17662752 Msa0672550:CDS 35.0%
ACCATAATAAAGGAGTTAGC+AGG + chr4_4:17662743-17662762 Msa0672550:CDS 35.0%
CCATAATAAAGGAGTTAGCA+GGG + chr4_4:17662744-17662763 Msa0672550:CDS 35.0%
AGAGTTGAAAAAACCTGAAG+AGG - chr4_4:17662896-17662915 None:intergenic 35.0%
AATCCTAATATTGCATGAGC+TGG + chr4_4:17663052-17663071 Msa0672550:intron 35.0%
!! TAACACTTGGTTGATTTGAG+TGG + chr4_4:17663108-17663127 Msa0672550:intron 35.0%
!! TTGGTTGATTTGAGTGGTAA+GGG + chr4_4:17663114-17663133 Msa0672550:intron 35.0%
AACTGAACAACGGACAAAAT+GGG - chr4_4:17663368-17663387 None:intergenic 35.0%
TAACTGAACAACGGACAAAA+TGG - chr4_4:17663369-17663388 None:intergenic 35.0%
ATCATATCCCTCTTATATGC+AGG + chr4_4:17663425-17663444 Msa0672550:intron 35.0%
ATCATTGCCTGCATATAAGA+GGG - chr4_4:17663435-17663454 None:intergenic 35.0%
AAAGAATCAACTCACGTTGA+TGG - chr4_4:17663512-17663531 None:intergenic 35.0%
CATAGATTTCAAGCAAGATG+AGG + chr4_4:17663910-17663929 Msa0672550:three_prime_UTR 35.0%
! CATATTTTCATCTTCTCTGC+AGG - chr4_4:17663948-17663967 None:intergenic 35.0%
!!! CTATACAAGCCCTTTTTTCA+CGG + chr4_4:17663981-17664000 Msa0672550:three_prime_UTR 35.0%
CTCTTTACACCGTGAAAAAA+GGG - chr4_4:17663993-17664012 None:intergenic 35.0%
ACTCTTTACACCGTGAAAAA+AGG - chr4_4:17663994-17664013 None:intergenic 35.0%
TCATTTCCCTTGTTCTCTTA+TGG + chr4_4:17664160-17664179 Msa0672550:three_prime_UTR 35.0%
CATTCTTCCATAAGAGAACA+AGG - chr4_4:17664170-17664189 None:intergenic 35.0%
TCTCTTATGGAAGAATGTGA+CGG + chr4_4:17664173-17664192 Msa0672550:three_prime_UTR 35.0%
!! TCTCTAGTGTTGGCATTAGT+CGG + chr4_4:17657491-17657510 Msa0672550:five_prime_UTR 40.0%
TCACTTGGTCAATTACCCTA+AGG + chr4_4:17657517-17657536 Msa0672550:five_prime_UTR 40.0%
GGTCAATTACCCTAAGGTTT+AGG + chr4_4:17657523-17657542 Msa0672550:five_prime_UTR 40.0%
!!! TGGGTTTGGTTTGGTTTTGT+TGG + chr4_4:17657671-17657690 Msa0672550:five_prime_UTR 40.0%
!!! GGGTTTGGTTTGGTTTTGTT+GGG + chr4_4:17657672-17657691 Msa0672550:five_prime_UTR 40.0%
!!! TGGTTTGGTTTTGTTGGGTT+TGG + chr4_4:17657677-17657696 Msa0672550:five_prime_UTR 40.0%
!!! GGTTTGGTTTTGTTGGGTTT+GGG + chr4_4:17657678-17657697 Msa0672550:five_prime_UTR 40.0%
!!! AGGGTTTTGTTCCATCTATG+AGG - chr4_4:17657738-17657757 None:intergenic 40.0%
TGGTTCTTGCAAGAACCTTA+GGG - chr4_4:17657757-17657776 None:intergenic 40.0%
! TTGGTTCTTGCAAGAACCTT+AGG - chr4_4:17657758-17657777 None:intergenic 40.0%
!!! GGGTTGTTTTGGTGATGAAT+TGG + chr4_4:17658172-17658191 Msa0672550:CDS 40.0%
!! GGTGGTTTTTCAGATTTTCC+TGG + chr4_4:17658359-17658378 Msa0672550:CDS 40.0%
CCATTCACATCTTTATTCCC+AGG - chr4_4:17658380-17658399 None:intergenic 40.0%
CCTGGGAATAAAGATGTGAA+TGG + chr4_4:17658377-17658396 Msa0672550:CDS 40.0%
!! TGTGAATGGTGTTGTTTCTG+AGG + chr4_4:17658391-17658410 Msa0672550:CDS 40.0%
!! TTGTTTCTGAGGAAGAGCTT+AGG + chr4_4:17658402-17658421 Msa0672550:CDS 40.0%
TCTTCCTTTGACAACAAAGG+AGG - chr4_4:17658488-17658507 None:intergenic 40.0%
TGTTGTCAAAGGAAGATTGG+AGG + chr4_4:17658492-17658511 Msa0672550:CDS 40.0%
TCAACAAAGGCTTAAAGGTG+GGG + chr4_4:17658517-17658536 Msa0672550:CDS 40.0%
GGTAACATGACTGATGATAG+TGG + chr4_4:17658575-17658594 Msa0672550:CDS 40.0%
!! AACATGACTGATGATAGTGG+TGG + chr4_4:17658578-17658597 Msa0672550:CDS 40.0%
!! TTTGATTGGTTTGCCTAGCT+TGG + chr4_4:17658706-17658725 Msa0672550:CDS 40.0%
!! TTGATTGGTTTGCCTAGCTT+GGG + chr4_4:17658707-17658726 Msa0672550:CDS 40.0%
! GAGCCTTGCTGAAATTTTTC+AGG + chr4_4:17658748-17658767 Msa0672550:CDS 40.0%
! GCTGTTAAGGTTGGTTGATA+TGG + chr4_4:17658852-17658871 Msa0672550:intron 40.0%
TTTCTGCTGGGTACAAAAGA+TGG + chr4_4:17658906-17658925 Msa0672550:intron 40.0%
! CGCACATAAAGCATTTGACA+TGG + chr4_4:17659335-17659354 Msa0672550:intron 40.0%
TAAACTACTTTCAGGCCACT+TGG + chr4_4:17659399-17659418 Msa0672550:intron 40.0%
AAACTACTTTCAGGCCACTT+GGG + chr4_4:17659400-17659419 Msa0672550:intron 40.0%
CATCAAAACTGCTGAATGTG+AGG - chr4_4:17659442-17659461 None:intergenic 40.0%
CACAGAGAAACAGTGAGATA+TGG - chr4_4:17659544-17659563 None:intergenic 40.0%
!! AAGCTCTGGGTAGAAGAAAA+GGG - chr4_4:17659913-17659932 None:intergenic 40.0%
!! TAAGCTCTGGGTAGAAGAAA+AGG - chr4_4:17659914-17659933 None:intergenic 40.0%
AATTACCGGTCATAAGCTCT+GGG - chr4_4:17659926-17659945 None:intergenic 40.0%
AAATTACCGGTCATAAGCTC+TGG - chr4_4:17659927-17659946 None:intergenic 40.0%
! CTTATGACCGGTAATTTTGC+AGG + chr4_4:17659930-17659949 Msa0672550:intron 40.0%
GCAGCATAAGAATATGAAGC+TGG - chr4_4:17660105-17660124 None:intergenic 40.0%
TATTCTTATGCTGCTGCACT+AGG + chr4_4:17660111-17660130 Msa0672550:CDS 40.0%
CTTGCAATATGTTGTGGATC+AGG - chr4_4:17660165-17660184 None:intergenic 40.0%
CTGATCCACAACATATTGCA+AGG + chr4_4:17660163-17660182 Msa0672550:CDS 40.0%
AATGTCTCTTCTGACAAGAG+AGG + chr4_4:17660225-17660244 Msa0672550:CDS 40.0%
TGAAAACCATTTGCCATCAC+AGG + chr4_4:17660347-17660366 Msa0672550:CDS 40.0%
!! TATCTTTTTGGTATGCAGGG+TGG + chr4_4:17660399-17660418 Msa0672550:CDS 40.0%
TGTGCAGGGACAGATTATTA+AGG - chr4_4:17660506-17660525 None:intergenic 40.0%
TTAATAATCTGTCCCTGCAC+AGG + chr4_4:17660505-17660524 Msa0672550:CDS 40.0%
! AATTATGGGCTAAGCGGTTA+TGG + chr4_4:17660663-17660682 Msa0672550:CDS 40.0%
! GCCATATTGGTTAGTCATCA+AGG - chr4_4:17660712-17660731 None:intergenic 40.0%
ATGGGAAATCAAATTGCTGG+TGG + chr4_4:17660870-17660889 Msa0672550:CDS 40.0%
! GCATTGTACTGTGACTTTTG+AGG - chr4_4:17661071-17661090 None:intergenic 40.0%
TCACAGTACAATGCACAACT+TGG + chr4_4:17661077-17661096 Msa0672550:CDS 40.0%
TCCAATCACCATGGTTACTA+TGG + chr4_4:17661116-17661135 Msa0672550:CDS 40.0%
TCCATAGTAACCATGGTGAT+TGG - chr4_4:17661120-17661139 None:intergenic 40.0%
CCATGGTTACTATGGAAATC+CGG + chr4_4:17661124-17661143 Msa0672550:CDS 40.0%
TACTATGGAAATCCGGCATA+TGG + chr4_4:17661131-17661150 Msa0672550:CDS 40.0%
ATTGTGCCTAATTGGACTTC+CGG - chr4_4:17661213-17661232 None:intergenic 40.0%
! AACAACATGCGTTTTGCTTC+TGG + chr4_4:17661239-17661258 Msa0672550:CDS 40.0%
AAGCTTTGCTTCTTCTCTGT+TGG + chr4_4:17661322-17661341 Msa0672550:CDS 40.0%
TTCAGAGAGCTCAAAACACT+TGG - chr4_4:17661369-17661388 None:intergenic 40.0%
!! TTTGAGCTCTCTGAAATTGC+CGG + chr4_4:17661374-17661393 Msa0672550:CDS 40.0%
CCTGAATTCAACAACATGTC+CGG - chr4_4:17661396-17661415 None:intergenic 40.0%
GAAGGCTAAGTGTAAGAACA+TGG - chr4_4:17661776-17661795 None:intergenic 40.0%
! ACACTTAGCCTTCAGATGTA+TGG + chr4_4:17661783-17661802 Msa0672550:CDS 40.0%
AGTCCATATTGAAAGGACAG+AGG - chr4_4:17661909-17661928 None:intergenic 40.0%
GAGATGGTTAAAGAGCTTGA+TGG + chr4_4:17661970-17661989 Msa0672550:CDS 40.0%
TAAAGTCGATCGCATCTTCA+GGG - chr4_4:17662062-17662081 None:intergenic 40.0%
ATAAAGTCGATCGCATCTTC+AGG - chr4_4:17662063-17662082 None:intergenic 40.0%
TAACTTTCTGCTGTGTTGCA+GGG - chr4_4:17662266-17662285 None:intergenic 40.0%
ATAACTTTCTGCTGTGTTGC+AGG - chr4_4:17662267-17662286 None:intergenic 40.0%
TGCAACACAGCAGAAAGTTA+TGG + chr4_4:17662266-17662285 Msa0672550:CDS 40.0%
TTTCTTACTACTCAGCCTAC+TGG + chr4_4:17662361-17662380 Msa0672550:intron 40.0%
TTTGAAGAACCAACCTCAGA+TGG - chr4_4:17662532-17662551 None:intergenic 40.0%
! GGTATGCCGTTTAAACATGT+GGG + chr4_4:17662645-17662664 Msa0672550:intron 40.0%
GATCAGCCCACATGTTTAAA+CGG - chr4_4:17662654-17662673 None:intergenic 40.0%
CGCTAAATAACAGCATGTAC+TGG + chr4_4:17662694-17662713 Msa0672550:intron 40.0%
TAACAGCATGTACTGGAACA+TGG + chr4_4:17662701-17662720 Msa0672550:intron 40.0%
AACAGCATGTACTGGAACAT+GGG + chr4_4:17662702-17662721 Msa0672550:intron 40.0%
ATTATGGTAGAACGCTCATG+AGG - chr4_4:17662731-17662750 None:intergenic 40.0%
CCCTGCTAACTCCTTTATTA+TGG - chr4_4:17662747-17662766 None:intergenic 40.0%
AAAGTTTGCCTCCAATGTTG+TGG + chr4_4:17662790-17662809 Msa0672550:CDS 40.0%
! GCATCTCACTGACTAGTATT+TGG - chr4_4:17662850-17662869 None:intergenic 40.0%
ATACTAGTCAGTGAGATGCT+TGG + chr4_4:17662851-17662870 Msa0672550:CDS 40.0%
AGTCCAGCTCATGCAATATT+AGG - chr4_4:17663058-17663077 None:intergenic 40.0%
!! CTTGGTTGATTTGAGTGGTA+AGG + chr4_4:17663113-17663132 Msa0672550:intron 40.0%
ATTCACCACGTGTGTTTAAC+TGG + chr4_4:17663157-17663176 Msa0672550:intron 40.0%
! GTGTTTAACTGGTTCTCTAG+TGG + chr4_4:17663168-17663187 Msa0672550:intron 40.0%
CATCATTGCCTGCATATAAG+AGG - chr4_4:17663436-17663455 None:intergenic 40.0%
! TTATGTTGTCCAAAAGGTGC+TGG + chr4_4:17663473-17663492 Msa0672550:CDS 40.0%
!! AACGTGAGTTGATTCTTTCG+CGG + chr4_4:17663514-17663533 Msa0672550:CDS 40.0%
TGTTGTTGCAGAGAGAAGAA+TGG + chr4_4:17663704-17663723 Msa0672550:intron 40.0%
TTCAATCAGCGGAAACACAT+AGG - chr4_4:17663833-17663852 None:intergenic 40.0%
GGCATTAGTCGGTTATCACT+TGG + chr4_4:17657502-17657521 Msa0672550:five_prime_UTR 45.0%
! AGAGAGGAATTTGAAGCTGG+CGG - chr4_4:17657784-17657803 None:intergenic 45.0%
! AGGAGAGAGGAATTTGAAGC+TGG - chr4_4:17657787-17657806 None:intergenic 45.0%
TTGGGAAGAAGACCAGTGAT+TGG + chr4_4:17658140-17658159 Msa0672550:CDS 45.0%
ACCAGTGATTGGCAATAACG+AGG + chr4_4:17658151-17658170 Msa0672550:CDS 45.0%
CCAGTGATTGGCAATAACGA+GGG + chr4_4:17658152-17658171 Msa0672550:CDS 45.0%
! GGCAATAACGAGGGTTGTTT+TGG + chr4_4:17658161-17658180 Msa0672550:CDS 45.0%
GTTCTTCGAATGCTGTTGGA+GGG + chr4_4:17658303-17658322 Msa0672550:CDS 45.0%
AATGCTGTTGGAGGGTTGTT+TGG + chr4_4:17658311-17658330 Msa0672550:CDS 45.0%
! TCCACCTCCTTTGTTGTCAA+AGG + chr4_4:17658481-17658500 Msa0672550:CDS 45.0%
TCCTTTGACAACAAAGGAGG+TGG - chr4_4:17658485-17658504 None:intergenic 45.0%
CTGTAGGTGGAATTGGAGAT+AGG + chr4_4:17658546-17658565 Msa0672550:CDS 45.0%
TAGGTGGAATTGGAGATAGG+AGG + chr4_4:17658549-17658568 Msa0672550:CDS 45.0%
GGAATTGGAGATAGGAGGAA+AGG + chr4_4:17658554-17658573 Msa0672550:CDS 45.0%
!! TGACTGATGATAGTGGTGGT+AGG + chr4_4:17658582-17658601 Msa0672550:CDS 45.0%
!!! CGCCACCTGGTTTTAACTTT+AGG + chr4_4:17658618-17658637 Msa0672550:CDS 45.0%
TAGGAAGCAAGAAAGGAGTG+AGG + chr4_4:17658637-17658656 Msa0672550:CDS 45.0%
GTGGAGAATGAAAAGACCAG+AGG + chr4_4:17658659-17658678 Msa0672550:CDS 45.0%
TTGCTTCTAAGTCCCAAGCT+AGG - chr4_4:17658722-17658741 None:intergenic 45.0%
! ACAGGCATTACCGAGTCTTT+TGG + chr4_4:17659630-17659649 Msa0672550:intron 45.0%
! GCATTACCGAGTCTTTTGGT+AGG + chr4_4:17659634-17659653 Msa0672550:intron 45.0%
ACTGAGCCTACCAAAAGACT+CGG - chr4_4:17659643-17659662 None:intergenic 45.0%
TTCTACCCAGAGCTTATGAC+CGG + chr4_4:17659918-17659937 Msa0672550:intron 45.0%
!! ATGCATTACGACTTGCTGGA+CGG - chr4_4:17659996-17660015 None:intergenic 45.0%
TCGAATGCATTACGACTTGC+TGG - chr4_4:17660000-17660019 None:intergenic 45.0%
ATAGGTGTGAGACATGGACT+AGG - chr4_4:17660192-17660211 None:intergenic 45.0%
AGTCCATGTCTCACACCTAT+TGG + chr4_4:17660192-17660211 Msa0672550:CDS 45.0%
! GATCTTGTGGCTGCTTTATC+CGG + chr4_4:17660303-17660322 Msa0672550:CDS 45.0%
! ATCTTGTGGCTGCTTTATCC+GGG + chr4_4:17660304-17660323 Msa0672550:CDS 45.0%
TTCTGCTGACAAGTTCATCC+CGG - chr4_4:17660325-17660344 None:intergenic 45.0%
ACTCAACCTGTGATGGCAAA+TGG - chr4_4:17660356-17660375 None:intergenic 45.0%
ACATCAGACTCAACCTGTGA+TGG - chr4_4:17660363-17660382 None:intergenic 45.0%
! TCAGGGCATTTGCAAAGTTC+AGG + chr4_4:17660465-17660484 Msa0672550:CDS 45.0%
TGCAAAGTTCAGGTAAGAGC+AGG + chr4_4:17660475-17660494 Msa0672550:CDS 45.0%
! TCACCTACCTCCCATTTTAG+TGG + chr4_4:17660582-17660601 Msa0672550:CDS 45.0%
ATCAAGGATGTCAATGCTGC+AGG - chr4_4:17660696-17660715 None:intergenic 45.0%
!! GCAGATTACTGGTGCCATAT+TGG - chr4_4:17660725-17660744 None:intergenic 45.0%
AAACATCGGTGGCAGATTAC+TGG - chr4_4:17660736-17660755 None:intergenic 45.0%
! GCAACGTTTTCAAACATCGG+TGG - chr4_4:17660747-17660766 None:intergenic 45.0%
! GCGGCAACGTTTTCAAACAT+CGG - chr4_4:17660750-17660769 None:intergenic 45.0%
AATTCTCGAGTCCATTCCAG+GGG - chr4_4:17660790-17660809 None:intergenic 45.0%
GAATTCTCGAGTCCATTCCA+GGG - chr4_4:17660791-17660810 None:intergenic 45.0%
AGAATTCTCGAGTCCATTCC+AGG - chr4_4:17660792-17660811 None:intergenic 45.0%
! GGAATGGACTCGAGAATTCT+TGG + chr4_4:17660792-17660811 Msa0672550:CDS 45.0%
ATGGACTCGAGAATTCTTGG+AGG + chr4_4:17660795-17660814 Msa0672550:CDS 45.0%
GAGAATTCTTGGAGGTGGTT+TGG + chr4_4:17660803-17660822 Msa0672550:CDS 45.0%
CCAAGATTATGCGCATCAGA+AGG - chr4_4:17660846-17660865 None:intergenic 45.0%
CCTTCTGATGCGCATAATCT+TGG + chr4_4:17660843-17660862 Msa0672550:CDS 45.0%
CTGATGCGCATAATCTTGGT+CGG + chr4_4:17660847-17660866 Msa0672550:CDS 45.0%
CGGATGGGAAATCAAATTGC+TGG + chr4_4:17660867-17660886 Msa0672550:CDS 45.0%
AAGTAGTTCCTGTCCACAGA+GGG - chr4_4:17660987-17661006 None:intergenic 45.0%
TCTGTGGACAGGAACTACTT+GGG + chr4_4:17660987-17661006 Msa0672550:CDS 45.0%
CAGTACAATGCACAACTTGG+TGG + chr4_4:17661080-17661099 Msa0672550:CDS 45.0%
! GCACAACTTGGTGGTAAATC+AGG + chr4_4:17661089-17661108 Msa0672550:CDS 45.0%
CCGGATTTCCATAGTAACCA+TGG - chr4_4:17661127-17661146 None:intergenic 45.0%
GAAATCCGGCATATGGTGTT+GGG + chr4_4:17661138-17661157 Msa0672550:CDS 45.0%
GTCTTATCCAGGAAGTCCAA+TGG + chr4_4:17661163-17661182 Msa0672550:CDS 45.0%
TTGGATCCGGAAGTCCAATT+AGG + chr4_4:17661204-17661223 Msa0672550:CDS 45.0%
!!! TGCGTTTTGCTTCTGGAATG+AGG + chr4_4:17661246-17661265 Msa0672550:CDS 45.0%
! TCTGGAATGAGGAACTTAGC+TGG + chr4_4:17661257-17661276 Msa0672550:CDS 45.0%
CTGGAATGAGGAACTTAGCT+GGG + chr4_4:17661258-17661277 Msa0672550:CDS 45.0%
TGGAATGAGGAACTTAGCTG+GGG + chr4_4:17661259-17661278 Msa0672550:CDS 45.0%
GCATGTAGATTCCGGGAATA+TGG + chr4_4:17661295-17661314 Msa0672550:CDS 45.0%
CCGGACATGTTGTTGAATTC+AGG + chr4_4:17661393-17661412 Msa0672550:CDS 45.0%
! GTCATCAAAGCAAGAGCATG+TGG - chr4_4:17661592-17661611 None:intergenic 45.0%
! GCTTTGATGACCGATGTCTT+TGG + chr4_4:17661601-17661620 Msa0672550:CDS 45.0%
GGCCATTGAAGTTGTTGATC+TGG + chr4_4:17661936-17661955 Msa0672550:intron 45.0%
CGTTGTGTTCGTGATCAGAA+TGG + chr4_4:17662003-17662022 Msa0672550:CDS 45.0%
ACACTCTCAACCCATCCATA+CGG + chr4_4:17662111-17662130 Msa0672550:CDS 45.0%
TGTATCACACGACAACCGTA+TGG - chr4_4:17662129-17662148 None:intergenic 45.0%
ATACGGTTGTCGTGTGATAC+AGG + chr4_4:17662128-17662147 Msa0672550:CDS 45.0%
AGTACTCTCTGCCATGCAAA+AGG - chr4_4:17662228-17662247 None:intergenic 45.0%
!! TTTTGCATGGCAGAGAGTAC+TGG + chr4_4:17662227-17662246 Msa0672550:intron 45.0%
ATGCTAGCACAGGATCAGTA+TGG + chr4_4:17662312-17662331 Msa0672550:CDS 45.0%
GTATGGCAACTACGTTGTTC+AGG + chr4_4:17662329-17662348 Msa0672550:CDS 45.0%
! TCCTTTTGACATGCCATCTG+AGG + chr4_4:17662516-17662535 Msa0672550:intron 45.0%
ACCTCAGATGGCATGTCAAA+AGG - chr4_4:17662520-17662539 None:intergenic 45.0%
! TTTGACATGCCATCTGAGGT+TGG + chr4_4:17662520-17662539 Msa0672550:intron 45.0%
! CGGTATGCCGTTTAAACATG+TGG + chr4_4:17662644-17662663 Msa0672550:intron 45.0%
ACACTTCTCCACAACATTGG+AGG - chr4_4:17662801-17662820 None:intergenic 45.0%
CAGACACTTCTCCACAACAT+TGG - chr4_4:17662804-17662823 None:intergenic 45.0%
ACTAGTATTTGGCGTTCTGC+AGG - chr4_4:17662839-17662858 None:intergenic 45.0%
! AAGAGGCTCATTTTCATCCG+TGG - chr4_4:17662879-17662898 None:intergenic 45.0%
GGATGAAAATGAGCCTCTTC+AGG + chr4_4:17662880-17662899 Msa0672550:CDS 45.0%
ATCAAAAGCTTCCGAGACAG+TGG - chr4_4:17662981-17663000 None:intergenic 45.0%
GATTTGAGTGGTAAGGGACT+CGG + chr4_4:17663120-17663139 Msa0672550:intron 45.0%
GAGAACCAGTTAAACACACG+TGG - chr4_4:17663165-17663184 None:intergenic 45.0%
! ACTGGTTCTCTAGTGGAGAT+AGG + chr4_4:17663175-17663194 Msa0672550:intron 45.0%
! CACATGTTTCCAGCACCTTT+TGG - chr4_4:17663485-17663504 None:intergenic 45.0%
! GTTGATTCTTTCGCGGATCA+AGG + chr4_4:17663521-17663540 Msa0672550:CDS 45.0%
!! GTAGAGAAACTTGTTGCTGC+TGG + chr4_4:17663597-17663616 Msa0672550:CDS 45.0%
ATGAAGAAGCAGCTTGCACT+AGG - chr4_4:17663804-17663823 None:intergenic 45.0%
!! ATAAAATAATAATAAAATTC+TGG + chr4_4:17657552-17657571 Msa0672550:five_prime_UTR 5.0%
!!! TGAAATTAAAATTAAAATTT+TGG + chr4_4:17657651-17657670 Msa0672550:five_prime_UTR 5.0%
!!! GAAATTAAAATTAAAATTTT+GGG + chr4_4:17657652-17657671 Msa0672550:five_prime_UTR 5.0%
! AATTTGAAGCTGGCGGCGAT+TGG - chr4_4:17657777-17657796 None:intergenic 50.0%
CCCTCGTTATTGCCAATCAC+TGG - chr4_4:17658155-17658174 None:intergenic 50.0%
GAATGTTGCTCCGCGAACAA+CGG + chr4_4:17658207-17658226 Msa0672550:CDS 50.0%
TTCGAAGAACCCTCCACAGT+AGG - chr4_4:17658293-17658312 None:intergenic 50.0%
GAGGGTTCTTCGAATGCTGT+TGG + chr4_4:17658299-17658318 Msa0672550:CDS 50.0%
GGTTCTTCGAATGCTGTTGG+AGG + chr4_4:17658302-17658321 Msa0672550:CDS 50.0%
AACAAAGGAGGTGGAAGCCT+AGG - chr4_4:17658476-17658495 None:intergenic 50.0%
TCCAATTCCACCTACAGCTG+AGG - chr4_4:17658543-17658562 None:intergenic 50.0%
! TCAATGTTTTCGACGCCACC+TGG + chr4_4:17658605-17658624 Msa0672550:CDS 50.0%
GAAGCAAGAAAGGAGTGAGG+TGG + chr4_4:17658640-17658659 Msa0672550:CDS 50.0%
AGACCAGAGGTTCTGCTGAA+TGG + chr4_4:17658672-17658691 Msa0672550:CDS 50.0%
GACCAGAGGTTCTGCTGAAT+GGG + chr4_4:17658673-17658692 Msa0672550:CDS 50.0%
ACCAGAGGTTCTGCTGAATG+GGG + chr4_4:17658674-17658693 Msa0672550:CDS 50.0%
!! TGGGGTGGTGATGGTTTGAT+TGG + chr4_4:17658692-17658711 Msa0672550:CDS 50.0%
! TCAGGCCACTTGGGTTGTAT+AGG + chr4_4:17659409-17659428 Msa0672550:intron 50.0%
TACTCTGCCTCAACACTGAG+AGG - chr4_4:17659487-17659506 None:intergenic 50.0%
!! TGCATTACGACTTGCTGGAC+GGG - chr4_4:17659995-17660014 None:intergenic 50.0%
GCAGAGTTCGCTCATGTTCA+AGG + chr4_4:17660051-17660070 Msa0672550:CDS 50.0%
TCTTATGCTGCTGCACTAGG+AGG + chr4_4:17660114-17660133 Msa0672550:CDS 50.0%
GGAGCCCTTGCAATATGTTG+TGG - chr4_4:17660171-17660190 None:intergenic 50.0%
CCATGTCTCACACCTATTGG+CGG + chr4_4:17660195-17660214 Msa0672550:CDS 50.0%
ACATTTCTCCCTCCGCCAAT+AGG - chr4_4:17660210-17660229 None:intergenic 50.0%
GAACGAGTCAGCAGATCTTG+TGG + chr4_4:17660290-17660309 Msa0672550:CDS 50.0%
CCTCCACTAAAATGGGAGGT+AGG - chr4_4:17660588-17660607 None:intergenic 50.0%
!! CCTACCTCCCATTTTAGTGG+AGG + chr4_4:17660585-17660604 Msa0672550:CDS 50.0%
!! ACCTCCCATTTTAGTGGAGG+AGG + chr4_4:17660588-17660607 Msa0672550:CDS 50.0%
ACCTCCTCCACTAAAATGGG+AGG - chr4_4:17660592-17660611 None:intergenic 50.0%
! TATGGGCTAAGCGGTTATGG+TGG + chr4_4:17660666-17660685 Msa0672550:CDS 50.0%
GACTCGAGAATTCTTGGAGG+TGG + chr4_4:17660798-17660817 Msa0672550:CDS 50.0%
! TCTTGGAGGTGGTTTGGCTT+CGG + chr4_4:17660809-17660828 Msa0672550:CDS 50.0%
TGCGCATAATCTTGGTCGGA+TGG + chr4_4:17660851-17660870 Msa0672550:CDS 50.0%
GCGCATAATCTTGGTCGGAT+GGG + chr4_4:17660852-17660871 Msa0672550:CDS 50.0%
! AATTGCTGGTGGTGCTCTTC+AGG + chr4_4:17660881-17660900 Msa0672550:CDS 50.0%
AGTAGTTCCTGTCCACAGAG+GGG - chr4_4:17660986-17661005 None:intergenic 50.0%
CAAGTAGTTCCTGTCCACAG+AGG - chr4_4:17660988-17661007 None:intergenic 50.0%
CTCTGTGGACAGGAACTACT+TGG + chr4_4:17660986-17661005 Msa0672550:CDS 50.0%
TCAGGCAACTCCAATCACCA+TGG + chr4_4:17661107-17661126 Msa0672550:CDS 50.0%
GGAAATCCGGCATATGGTGT+TGG + chr4_4:17661137-17661156 Msa0672550:CDS 50.0%
GACAACCCAACACCATATGC+CGG - chr4_4:17661146-17661165 None:intergenic 50.0%
! GGTGTTGGGTTGTCTTATCC+AGG + chr4_4:17661152-17661171 Msa0672550:CDS 50.0%
GAGTTTGCCATTGGACTTCC+TGG - chr4_4:17661173-17661192 None:intergenic 50.0%
GGAAGTCCAATGGCAAACTC+TGG + chr4_4:17661173-17661192 Msa0672550:CDS 50.0%
GGAGAACCAGAGTTTGCCAT+TGG - chr4_4:17661182-17661201 None:intergenic 50.0%
!! GCAAACTCTGGTTCTCCAGT+TGG + chr4_4:17661185-17661204 Msa0672550:CDS 50.0%
!! TCTGGTTCTCCAGTTGGATC+CGG + chr4_4:17661191-17661210 Msa0672550:CDS 50.0%
ATTGGACTTCCGGATCCAAC+TGG - chr4_4:17661203-17661222 None:intergenic 50.0%
AGGAACTTAGCTGGGGTCAT+GGG + chr4_4:17661266-17661285 Msa0672550:CDS 50.0%
GGACCTTGGCATGTAGATTC+CGG + chr4_4:17661287-17661306 Msa0672550:CDS 50.0%
GACCTTGGCATGTAGATTCC+GGG + chr4_4:17661288-17661307 Msa0672550:CDS 50.0%
TTCCCGGAATCTACATGCCA+AGG - chr4_4:17661293-17661312 None:intergenic 50.0%
!! GTTGGCAGTGCCGATCAATA+TGG + chr4_4:17661493-17661512 Msa0672550:intron 50.0%
GCCTTCAGATGTATGGTTGC+CGG + chr4_4:17661790-17661809 Msa0672550:CDS 50.0%
CCTTCAGATGTATGGTTGCC+GGG + chr4_4:17661791-17661810 Msa0672550:CDS 50.0%
TGGTTGCCGGGTTATTCAGA+AGG + chr4_4:17661803-17661822 Msa0672550:CDS 50.0%
CACACGACAACCGTATGGAT+GGG - chr4_4:17662124-17662143 None:intergenic 50.0%
TCACACGACAACCGTATGGA+TGG - chr4_4:17662125-17662144 None:intergenic 50.0%
! CTCTACTCCGCCTGATTTTG+TGG + chr4_4:17662571-17662590 Msa0672550:intron 50.0%
GACGTGACCACAAAATCAGG+CGG - chr4_4:17662581-17662600 None:intergenic 50.0%
CTGGACGTGACCACAAAATC+AGG - chr4_4:17662584-17662603 None:intergenic 50.0%
!! GAGAAGTGTCTGACCTTCAG+TGG + chr4_4:17662812-17662831 Msa0672550:CDS 50.0%
CAGTGAGATGCTTGGAACCA+CGG + chr4_4:17662859-17662878 Msa0672550:CDS 50.0%
TGCGACGATGTGCTTTCCAT+AGG - chr4_4:17663574-17663593 None:intergenic 50.0%
!! GAGAAACTTGTTGCTGCTGG+AGG + chr4_4:17663600-17663619 Msa0672550:CDS 50.0%
TCAGACTCCTCAACCTGCTT+AGG + chr4_4:17663731-17663750 Msa0672550:CDS 50.0%
TCTCTATGTCACGCCTAAGC+AGG - chr4_4:17663747-17663766 None:intergenic 50.0%
CTTCTTGCCTCCGTTGTTCG+CGG - chr4_4:17658220-17658239 None:intergenic 55.0%
ATCAGCTCCTCCTACTGTGG+AGG + chr4_4:17658280-17658299 Msa0672550:CDS 55.0%
TCAGCTCCTCCTACTGTGGA+GGG + chr4_4:17658281-17658300 Msa0672550:CDS 55.0%
GAAGAACCCTCCACAGTAGG+AGG - chr4_4:17658290-17658309 None:intergenic 55.0%
GCTGTTGGAGGGTTGTTTGG+TGG + chr4_4:17658314-17658333 Msa0672550:CDS 55.0%
! GTTGGAGGGTTGTTTGGTGG+CGG + chr4_4:17658317-17658336 Msa0672550:CDS 55.0%
GCCTCAGCTGTAGGTGGAAT+TGG + chr4_4:17658539-17658558 Msa0672550:CDS 55.0%
ACCCCATTCAGCAGAACCTC+TGG - chr4_4:17658678-17658697 None:intergenic 55.0%
AGAGGTTCTGCTGAATGGGG+TGG + chr4_4:17658677-17658696 Msa0672550:CDS 55.0%
TCTGCTGAATGGGGTGGTGA+TGG + chr4_4:17658683-17658702 Msa0672550:CDS 55.0%
!! TTACGACTTGCTGGACGGGA+AGG - chr4_4:17659991-17660010 None:intergenic 55.0%
CCGCCAATAGGTGTGAGACA+TGG - chr4_4:17660198-17660217 None:intergenic 55.0%
TGTCTCACACCTATTGGCGG+AGG + chr4_4:17660198-17660217 Msa0672550:CDS 55.0%
GTCTCACACCTATTGGCGGA+GGG + chr4_4:17660199-17660218 Msa0672550:CDS 55.0%
ATGCAGGGTGGTCAAGAGCA+CGG + chr4_4:17660411-17660430 Msa0672550:CDS 55.0%
TAATCTGTCCCTGCACAGGC+AGG + chr4_4:17660509-17660528 Msa0672550:CDS 55.0%
GGATGCCATCATGGATGCAG+CGG - chr4_4:17660769-17660788 None:intergenic 55.0%
CATTCCAGGGGATGCCATCA+TGG - chr4_4:17660778-17660797 None:intergenic 55.0%
CATGATGGCATCCCCTGGAA+TGG + chr4_4:17660776-17660795 Msa0672550:CDS 55.0%
! CTTGGAGGTGGTTTGGCTTC+GGG + chr4_4:17660810-17660829 Msa0672550:CDS 55.0%
GAGGACGTCAGAGTATGCTG+CGG + chr4_4:17660938-17660957 Msa0672550:CDS 55.0%
TGCTCTTAACGACCCCTCTG+TGG + chr4_4:17660971-17660990 Msa0672550:CDS 55.0%
TTAACGACCCCTCTGTGGAC+AGG + chr4_4:17660976-17660995 Msa0672550:CDS 55.0%
GAGCTGCAGAAAGCCTACCT+CGG + chr4_4:17661032-17661051 Msa0672550:CDS 55.0%
AGCTGCAGAAAGCCTACCTC+GGG + chr4_4:17661033-17661052 Msa0672550:CDS 55.0%
GAGGAACTTAGCTGGGGTCA+TGG + chr4_4:17661265-17661284 Msa0672550:CDS 55.0%
CCCGGCAACCATACATCTGA+AGG - chr4_4:17661794-17661813 None:intergenic 55.0%
CGCTGTTAGCATGCTAGCAC+AGG + chr4_4:17662302-17662321 Msa0672550:CDS 55.0%
TGTCACGCCTAAGCAGGTTG+AGG - chr4_4:17663741-17663760 None:intergenic 55.0%
TGTTGCTCCGCGAACAACGG+AGG + chr4_4:17658210-17658229 Msa0672550:CDS 60.0%
CGCGAACAACGGAGGCAAGA+AGG + chr4_4:17658218-17658237 Msa0672550:CDS 60.0%
CGGATCAGCTCCTCCTACTG+TGG + chr4_4:17658277-17658296 Msa0672550:CDS 60.0%
!! TTGTTTGGTGGCGGTGGTGG+TGG + chr4_4:17658326-17658345 Msa0672550:CDS 60.0%
AAAGGTGGGGCCTCAGCTGT+AGG + chr4_4:17658530-17658549 Msa0672550:CDS 60.0%
ACGGGAAGGAAGGCCTGTGA+CGG - chr4_4:17659977-17659996 None:intergenic 60.0%
!! GACTTGCTGGACGGGAAGGA+AGG - chr4_4:17659987-17660006 None:intergenic 60.0%
TAGCTCAGCCTGCCTGTGCA+GGG - chr4_4:17660520-17660539 None:intergenic 60.0%
CGTTGCCGCTGCATCCATGA+TGG + chr4_4:17660761-17660780 Msa0672550:CDS 60.0%
GCATCCATGATGGCATCCCC+TGG + chr4_4:17660771-17660790 Msa0672550:CDS 60.0%
CGAGAGAACAGACCCGAGGT+AGG - chr4_4:17661048-17661067 None:intergenic 60.0%
TAGCTGGGGTCATGGGACCT+TGG + chr4_4:17661273-17661292 Msa0672550:CDS 60.0%
GCGTTCTGCAGGACCACTGA+AGG - chr4_4:17662828-17662847 None:intergenic 60.0%
!! GGAGGGTTGTTTGGTGGCGG+TGG + chr4_4:17658320-17658339 Msa0672550:CDS 65.0%
!! GGGTTGTTTGGTGGCGGTGG+TGG + chr4_4:17658323-17658342 Msa0672550:CDS 65.0%
!! TTTGGTGGCGGTGGTGGTGG+TGG + chr4_4:17658329-17658348 Msa0672550:CDS 65.0%
!! GGTGGTGGTGGTGGTGTTGC+TGG + chr4_4:17658338-17658357 Msa0672550:CDS 65.0%
!! GGTGGTGGTGGTGTTGCTGG+TGG + chr4_4:17658341-17658360 Msa0672550:CDS 65.0%
GAGCGTAACACCCCCGTCAC+AGG + chr4_4:17659961-17659980 Msa0672550:CDS 65.0%
GGAAGGAAGGCCTGTGACGG+GGG - chr4_4:17659974-17659993 None:intergenic 65.0%
GGGAAGGAAGGCCTGTGACG+GGG - chr4_4:17659975-17659994 None:intergenic 65.0%
CGGGAAGGAAGGCCTGTGAC+GGG - chr4_4:17659976-17659995 None:intergenic 65.0%
GTAGCTCAGCCTGCCTGTGC+AGG - chr4_4:17660521-17660540 None:intergenic 65.0%
! GGTGGTTTGGCTTCGGGAGC+TGG + chr4_4:17660816-17660835 Msa0672550:CDS 65.0%
GAGGCGAGAGAACAGACCCG+AGG - chr4_4:17661052-17661071 None:intergenic 65.0%
GGTGGGGCCTCAGCTGTAGG+TGG + chr4_4:17658533-17658552 Msa0672550:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 17657478 17664218 17657478 ID=Msa0672550;Name=Msa0672550
chr4_4 mRNA 17657478 17664218 17657478 ID=Msa0672550-mRNA-1;Parent=Msa0672550;Name=Msa0672550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=650|1|1|1|1|1|9|466|1028
chr4_4 exon 17657478 17658769 17657478 ID=Msa0672550-mRNA-1:exon:5139;Parent=Msa0672550-mRNA-1
chr4_4 exon 17659952 17661414 17659952 ID=Msa0672550-mRNA-1:exon:5140;Parent=Msa0672550-mRNA-1
chr4_4 exon 17661501 17661642 17661501 ID=Msa0672550-mRNA-1:exon:5141;Parent=Msa0672550-mRNA-1
chr4_4 exon 17661717 17661824 17661717 ID=Msa0672550-mRNA-1:exon:5142;Parent=Msa0672550-mRNA-1
chr4_4 exon 17661937 17662149 17661937 ID=Msa0672550-mRNA-1:exon:5143;Parent=Msa0672550-mRNA-1
chr4_4 exon 17662240 17662350 17662240 ID=Msa0672550-mRNA-1:exon:5144;Parent=Msa0672550-mRNA-1
chr4_4 exon 17662707 17662901 17662707 ID=Msa0672550-mRNA-1:exon:5145;Parent=Msa0672550-mRNA-1
chr4_4 exon 17663447 17663621 17663447 ID=Msa0672550-mRNA-1:exon:5146;Parent=Msa0672550-mRNA-1
chr4_4 exon 17663715 17664218 17663715 ID=Msa0672550-mRNA-1:exon:5147;Parent=Msa0672550-mRNA-1
chr4_4 five_prime_UTR 17657478 17658127 17657478 ID=Msa0672550-mRNA-1:five_prime_utr;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17658128 17658769 17658128 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17659952 17661414 17659952 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17661501 17661642 17661501 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17661717 17661824 17661717 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17661937 17662149 17661937 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17662240 17662350 17662240 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17662707 17662901 17662707 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17663447 17663621 17663447 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 CDS 17663715 17663752 17663715 ID=Msa0672550-mRNA-1:cds;Parent=Msa0672550-mRNA-1
chr4_4 three_prime_UTR 17663753 17664218 17663753 ID=Msa0672550-mRNA-1:three_prime_utr;Parent=Msa0672550-mRNA-1
Gene Sequence

>Msa0672550

ATGTTGTCTGAGTTGGGAAGAAGACCAGTGATTGGCAATAACGAGGGTTGTTTTGGTGATGAATTGGAGAAGGAAATAGGAATGTTGCTCCGCGAACAACGGAGGCAAGAAGGCGATGATCGCGAAAGAGAGTTGAATATATTTAGGAGCGGATCAGCTCCTCCTACTGTGGAGGGTTCTTCGAATGCTGTTGGAGGGTTGTTTGGTGGCGGTGGTGGTGGTGGTGTTGCTGGTGGTTTTTCAGATTTTCCTGGGAATAAAGATGTGAATGGTGTTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCAAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCAAAGGAAGATTGGAGGTTTCAACAAAGGCTTAAAGGTGGGGCCTCAGCTGTAGGTGGAATTGGAGATAGGAGGAAAGGTAACATGACTGATGATAGTGGTGGTAGGTCAATGTTTTCGACGCCACCTGGTTTTAACTTTAGGAAGCAAGAAAGGAGTGAGGTGGAGAATGAAAAGACCAGAGGTTCTGCTGAATGGGGTGGTGATGGTTTGATTGGTTTGCCTAGCTTGGGACTTAGAAGCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACCCCCGTCACAGGCCTTCCTTCCCGTCCAGCAAGTCGTAATGCATTCGATGAAAATGTTGATAAAGTAAATACTTCTGAAGCAGAGTTCGCTCATGTTCAAGGATCATCTGCAACACAAAATATTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCACTAGGAGGATCTTCATTGTCAAGAAGCACTACTCCTGATCCACAACATATTGCAAGGGCTCCTAGTCCATGTCTCACACCTATTGGCGGAGGGAGAAATGTCTCTTCTGACAAGAGAGGCATTGTCAGTCCAGATTCATTTAACGGTGTTTCATCTGGCATGAACGAGTCAGCAGATCTTGTGGCTGCTTTATCCGGGATGAACTTGTCAGCAGAAGATGAAAACCATTTGCCATCACAGGTTGAGTCTGATGTCGATAATCATCAGAGATATCTTTTTGGTATGCAGGGTGGTCAAGAGCACGGCAAGCAACATCCATATCTAAAAAATTCTGAATCAGGGCATTTGCAAAGTTCAGGTAAGAGCAGGTCAGACCTTAATAATCTGTCCCTGCACAGGCAGGCTGAGCTACAAAACTCGACTGCTCCTTTGAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTGGAGGAGGTAATATGCAAGCTCAATATCAGTCTATAGATGGTATGAATTCATCATTCACTAATTATGGGCTAAGCGGTTATGGTGGAAATCCTGCAGCATTGACATCCTTGATGACTAACCAATATGGCACCAGTAATCTGCCACCGATGTTTGAAAACGTTGCCGCTGCATCCATGATGGCATCCCCTGGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCGGGAGCTGGTTCTCCTTCTGATGCGCATAATCTTGGTCGGATGGGAAATCAAATTGCTGGTGGTGCTCTTCAGGCTCCGTTTGTTGATCCGATGTATCTTCAGTATATGAGGACGTCAGAGTATGCTGCGGCACAACTCGCTGCTCTTAACGACCCCTCTGTGGACAGGAACTACTTGGGTAATTCGTACATGAATTTACTTGAGCTGCAGAAAGCCTACCTCGGGTCTGTTCTCTCGCCTCAAAAGTCACAGTACAATGCACAACTTGGTGGTAAATCAGGCAACTCCAATCACCATGGTTACTATGGAAATCCGGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCAGTTGGATCCGGAAGTCCAATTAGGCACAATGATCTGAACAACATGCGTTTTGCTTCTGGAATGAGGAACTTAGCTGGGGTCATGGGACCTTGGCATGTAGATTCCGGGAATATGGATGAAAGCTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAGCCAAGTGTTTTGAGCTCTCTGAAATTGCCGGACATGTTGTTGAATTCAGTGCCGATCAATATGGAAGCCGATTTATTCAACAGAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACCGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCACCCCAGAGAAGAGAATTAGCAAACAAGCTTATTGGCCATGTTCTTACACTTAGCCTTCAGATGTATGGTTGCCGGGTTATTCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTAAAGAGCTTGATGGTAATATCATGCGTTGTGTTCGTGATCAGAATGGTAATCATGTCATTCAAAAATGTATTGAATGTGTCCCTGAAGATGCGATCGACTTTATTGTTTCAACATTTTTCGATCAAGTTGTGACACTCTCAACCCATCCATACGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGTGAAAGCCCTGCAACACAGCAGAAAGTTATGGACGAGATTTTAGGCGCTGTTAGCATGCTAGCACAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAGCGTTCTACCATAATAAAGGAGTTAGCAGGGAAGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAGTGTCTGACCTTCAGTGGTCCTGCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACGGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCATCAACGTGAGTTGATTCTTTCGCGGATCAAGGTTCATTTGAACGCATTGAAAAAGTATACCTATGGAAAGCACATCGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGAAGAATGGCTGCTCAGACTCCTCAACCTGCTTAG
Protein sequence

>Msa0672550

MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGSSNAVGGLFGGGGGGGVAGGFSDFPGNKDVNGVVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASAVGGIGDRRKGNMTDDSGGRSMFSTPPGFNFRKQERSEVENEKTRGSAEWGGDGLIGLPSLGLRSKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFDENVDKVNTSEAEFAHVQGSSATQNIGLPASYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRNVSSDKRGIVSPDSFNGVSSGMNESADLVAALSGMNLSAEDENHLPSQVESDVDNHQRYLFGMQGGQEHGKQHPYLKNSESGHLQSSGKSRSDLNNLSLHRQAELQNSTAPLNNSYFKGSPTSHFSGGGNMQAQYQSIDGMNSSFTNYGLSGYGGNPAALTSLMTNQYGTSNLPPMFENVAAASMMASPGMDSRILGGGLASGAGSPSDAHNLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNAQLGGKSGNSNHHGYYGNPAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHVDSGNMDESFASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVKELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCESPATQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFSGPAERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMAAQTPQPA*