AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455760 MtrunA17_Chr3g0102681 97.393 652 17 0 1 652 1 652 0.0 1248
Msa0455760 MtrunA17_Chr3g0078801 59.132 668 248 8 1 652 1 659 0.0 620
Msa0455760 MtrunA17_Chr5g0446731 58.533 668 252 8 1 652 1 659 0.0 619
Msa0455760 MtrunA17_Chr2g0290651 43.540 565 307 7 11 570 8 565 1.55e-111 347
Msa0455760 MtrunA17_Chr4g0076431 45.276 561 272 10 16 566 6 541 2.70e-98 312
Msa0455760 MtrunA17_Chr3g0133891 30.033 606 387 10 4 580 269 866 1.86e-43 167
Msa0455760 MtrunA17_Chr1g0153431 27.882 642 392 16 4 594 249 870 9.51e-37 147
Msa0455760 MtrunA17_Chr4g0075951 43.450 313 159 6 261 566 4 305 2.07e-35 136
Msa0455760 MtrunA17_Chr7g0251231 28.923 650 385 19 31 637 12 627 2.08e-26 114
Msa0455760 MtrunA17_Chr8g0369191 31.162 568 326 16 24 571 27 549 1.26e-25 112
Msa0455760 MtrunA17_Chr7g0244501 27.473 273 193 2 299 571 166 433 3.35e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455760 AT5G55860.1 55.371 661 274 11 1 652 1 649 0.0 576
Msa0455760 AT1G12150.2 40.934 557 307 4 12 568 9 543 2.04e-108 338
Msa0455760 AT1G12150.1 40.934 557 307 4 12 568 9 543 2.04e-108 338
Msa0455760 AT4G17210.1 32.925 571 328 9 2 565 1 523 4.65e-63 218
Msa0455760 AT2G26570.1 29.680 593 381 9 10 573 146 731 2.27e-40 158
Msa0455760 AT2G26570.2 29.680 593 381 9 10 573 146 731 2.27e-40 158
Msa0455760 AT4G33390.1 28.620 594 378 11 9 571 142 720 1.22e-31 131
Msa0455760 AT5G42880.1 27.634 579 372 13 11 571 117 666 6.04e-25 110
Msa0455760 AT1G66840.2 28.000 525 318 11 32 531 11 500 3.79e-24 107
Msa0455760 AT1G66840.1 28.000 525 318 11 32 531 11 500 3.79e-24 107
Msa0455760 AT1G45545.1 25.758 594 377 14 3 576 134 683 2.05e-20 96.7
Msa0455760 AT1G45545.2 25.758 594 377 14 3 576 135 684 2.09e-20 96.7
Msa0455760 AT3G13190.4 33.108 296 105 7 300 592 93 298 1.05e-19 90.9
Msa0455760 AT3G13190.4 43.678 87 44 1 28 114 2 83 7.89e-11 64.3
Msa0455760 AT3G13190.2 33.108 296 105 7 300 592 93 298 1.05e-19 90.9
Msa0455760 AT3G13190.2 43.678 87 44 1 28 114 2 83 7.89e-11 64.3
Msa0455760 AT3G13190.1 33.108 296 105 7 300 592 93 298 1.05e-19 90.9
Msa0455760 AT3G13190.1 43.678 87 44 1 28 114 2 83 7.89e-11 64.3
Msa0455760 AT3G13190.3 33.108 296 105 7 300 592 93 298 1.05e-19 90.9
Msa0455760 AT3G13190.3 43.678 87 44 1 28 114 2 83 7.89e-11 64.3

Find 120 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTTTGGTGACAAATTA+TGG 0.127940 3_3:-48783395 Msa0455760:three_prime_UTR
GAAATTACTTGCTTTGAAAA+AGG 0.226698 3_3:-48784702 Msa0455760:CDS
AATCATCTCCTCAGCATTAT+AGG 0.237681 3_3:-48783713 Msa0455760:CDS
AAAAGAGCTGAACAAGTTAA+AGG 0.285147 3_3:-48785254 Msa0455760:CDS
GGACATGCATTATATGTAAA+TGG 0.299725 3_3:-48783373 Msa0455760:three_prime_UTR
AAAGCTGCTGTGTCTCTATT+TGG 0.302297 3_3:-48787068 Msa0455760:CDS
ACCTCAGCAGAATAAGCTTT+TGG 0.303574 3_3:+48787005 None:intergenic
TTTCATGTCAGCTAATTTAT+CGG 0.305879 3_3:+48783986 None:intergenic
CCGCCGTGCTTCCTCAGTTT+CGG 0.320227 3_3:+48784277 None:intergenic
TCGAAGAAAATTAATATTAG+TGG 0.333342 3_3:-48783615 Msa0455760:CDS
AACACAGGAGGCCTTGAAAA+AGG 0.341599 3_3:-48783859 Msa0455760:CDS
TCAAATCATCGACTGTCCTT+TGG 0.346505 3_3:+48785173 None:intergenic
AGCTTTCATGACTGGTAGAT+TGG 0.347786 3_3:-48783286 Msa0455760:three_prime_UTR
TAAAACTTATTACTGAATCT+AGG 0.353268 3_3:-48785141 Msa0455760:CDS
ATTGTATGGTGTTAATAGTT+TGG 0.355345 3_3:-48783408 Msa0455760:three_prime_UTR
TATCTTAGATCTAAATCTTA+AGG 0.355565 3_3:+48787192 None:intergenic
GAGAGCCAGTAGCAGTTTGC+CGG 0.364368 3_3:+48787153 None:intergenic
CGCAATTTCATTCATTGTCT+CGG 0.364944 3_3:+48784637 None:intergenic
GTTCGTTCACTAGAGAGTTT+TGG 0.370640 3_3:-48785305 Msa0455760:intron
CTTAGATTCTTCAGCCGAAC+AGG 0.377156 3_3:+48784349 None:intergenic
ATAGTTTGGTGACAAATTAT+GGG 0.378834 3_3:-48783394 Msa0455760:three_prime_UTR
CAAATCATCGACTGTCCTTT+GGG 0.385506 3_3:+48785174 None:intergenic
TTCTGATGACATCTGTGTTT+CGG 0.386782 3_3:+48783734 None:intergenic
CTGATGGAGCAAACGGTGCC+TGG 0.387841 3_3:-48785057 Msa0455760:CDS
GGATCTGCTTCTTATTTGCC+TGG 0.393498 3_3:-48783555 Msa0455760:CDS
GCTGAAGAATCTAAGGTTAG+AGG 0.403747 3_3:-48784341 Msa0455760:CDS
CTCTGTGAAAACTGTTACTT+CGG 0.404144 3_3:-48784570 Msa0455760:CDS
CTGTTCGGCTGAAGAATCTA+AGG 0.404534 3_3:-48784348 Msa0455760:CDS
TGCTTCTTCCAATGCAAGCT+TGG 0.405983 3_3:+48784199 None:intergenic
GAAAGAACATTCTGAGTTGA+AGG 0.406873 3_3:-48784447 Msa0455760:CDS
AGCTGACACTCTTGCATTCG+AGG 0.408737 3_3:+48784931 None:intergenic
CCCAACTGTGGATTCCAATT+CGG 0.409056 3_3:+48784415 None:intergenic
GTCTGAGCTCGAAGCCTGTT+CGG 0.418955 3_3:-48784363 Msa0455760:CDS
ACTGTTACTTCGGAGCTTGA+TGG 0.425760 3_3:-48784560 Msa0455760:CDS
AAAATCCGGCAAACTGCTAC+TGG 0.430151 3_3:-48787158 Msa0455760:CDS
TGCGGCTCTGCATACAGAAA+TGG 0.431425 3_3:-48784618 Msa0455760:CDS
AAAAGAAATTTCAGCTGTAA+AGG 0.450558 3_3:-48784843 Msa0455760:CDS
AAGCTCTTGTGGAGCTTGAA+AGG 0.450937 3_3:-48785198 Msa0455760:CDS
GTGTCAATCTCTCCAACCTC+TGG 0.455117 3_3:+48787113 None:intergenic
GCAAACAAAGCTAGCATATG+TGG 0.459076 3_3:-48784810 Msa0455760:CDS
AGGGTGAGCTTCGAAGGTGG+CGG 0.468730 3_3:-48783803 Msa0455760:CDS
AGCAGCAAAGAAAGCGGTTG+AGG 0.474306 3_3:-48783823 Msa0455760:CDS
TACATGAAGTTGCGTCTCCT+TGG 0.480195 3_3:+48785282 None:intergenic
TCCAATGTTGTACGAGGAGG+TGG 0.492938 3_3:+48783672 None:intergenic
AAACAAAAGATCGTCTGACT+TGG 0.493337 3_3:-48784594 Msa0455760:CDS
AGCTCTTGTGGAGCTTGAAA+GGG 0.495752 3_3:-48785197 Msa0455760:CDS
AGATATGAAAACTGCAACAC+AGG 0.498887 3_3:-48783874 Msa0455760:CDS
CGAAACTGAGGAAGCACGGC+GGG 0.499299 3_3:-48784276 Msa0455760:CDS
TGATATTAAGCTTTCATGAC+TGG 0.499587 3_3:-48783294 Msa0455760:three_prime_UTR
AGAAGCTGAAAATGCAATGA+AGG 0.500269 3_3:-48784894 Msa0455760:CDS
AAAACTTATTACTGAATCTA+GGG 0.504876 3_3:-48785140 Msa0455760:CDS
AGCTTCACAACAAACTATAC+AGG 0.508704 3_3:+48783525 None:intergenic
AAAAGCAATATTGTTGAGGA+TGG 0.511312 3_3:-48783576 Msa0455760:CDS
AGAAAACACTCTTAGAAGCT+TGG 0.512858 3_3:-48784504 Msa0455760:CDS
GCATCTACATCGTCAGAATC+CGG 0.512989 3_3:-48784068 Msa0455760:CDS
CACGAGACCTATGTGTGAAA+GGG 0.513018 3_3:-48783256 Msa0455760:three_prime_UTR
CGGTTGAGGGTGAGCTTCGA+AGG 0.513525 3_3:-48783809 Msa0455760:CDS
TAAATTAGCTGACATGAAAG+TGG 0.513758 3_3:-48783982 Msa0455760:CDS
GGGTGAGCTTCGAAGGTGGC+GGG 0.519859 3_3:-48783802 Msa0455760:CDS
TACTAAGGCTCAAGCTCTTG+TGG 0.520283 3_3:-48785209 Msa0455760:CDS
TCCGAATTGGAATCCACAGT+TGG 0.526090 3_3:-48784416 Msa0455760:CDS
AAAGAACGCTGAAACTACTA+AGG 0.527676 3_3:-48785224 Msa0455760:CDS
CACACATAGGTCTCGTGAAA+GGG 0.527839 3_3:+48783262 None:intergenic
CAAAAGTACGGTGACTCTGA+TGG 0.536667 3_3:-48785073 Msa0455760:CDS
AACAGACTGAAAAGGTGGGC+TGG 0.541022 3_3:+48787091 None:intergenic
CCGAATTGGAATCCACAGTT+GGG 0.544037 3_3:-48784415 Msa0455760:CDS
TCACGAGACCTATGTGTGAA+AGG 0.548333 3_3:-48783257 Msa0455760:three_prime_UTR
AGATCTGAGGAAAACCCGTC+AGG 0.549936 3_3:-48784966 Msa0455760:CDS
TGAAGCTACCAAGCTTGCAT+TGG 0.554079 3_3:-48784207 Msa0455760:CDS
CGATATTGTCATTGCAGCAC+CGG 0.554335 3_3:+48784049 None:intergenic
TGATGATTTGTGTGTAGTTG+AGG 0.555687 3_3:-48783477 Msa0455760:three_prime_UTR
ATCACAGCAACAGCAAGCAT+TGG 0.557927 3_3:-48784786 Msa0455760:CDS
GGATGAATCGTATTCCTGAC+GGG 0.561805 3_3:+48784952 None:intergenic
GCAGCAAAGAAAGCGGTTGA+GGG 0.562121 3_3:-48783822 Msa0455760:CDS
TATCTCTCCCTTTCACACAT+AGG 0.564728 3_3:+48783249 None:intergenic
GGTGACTCTGATGGAGCAAA+CGG 0.565178 3_3:-48785064 Msa0455760:CDS
TCCACCTCCTCGTACAACAT+TGG 0.565733 3_3:-48783673 Msa0455760:CDS
CCCAGTCTAAAACCAGAGGT+TGG 0.565934 3_3:-48787125 Msa0455760:CDS
AAGTAAAAGCATTCTTGCGG+TGG 0.566683 3_3:-48783219 Msa0455760:three_prime_UTR
GCAGCTTTAACAGACTGAAA+AGG 0.569244 3_3:+48787083 None:intergenic
TCACACATAGGTCTCGTGAA+AGG 0.574248 3_3:+48783261 None:intergenic
AAAGTTGGAGGCAACTCAGA+AGG 0.575379 3_3:-48783904 Msa0455760:CDS
GAAGAAAAGCAATATTGTTG+AGG 0.577100 3_3:-48783580 Msa0455760:CDS
AGTGGATGCTGCGAAAGCAC+AGG 0.579774 3_3:-48783964 Msa0455760:CDS
ATATTAGTGGTATCTTTCAA+AGG 0.583937 3_3:-48783602 Msa0455760:CDS
AGGAGTTCGAGTCTCTAAAA+CGG 0.584086 3_3:-48784022 Msa0455760:CDS
GCTGTGTCTCTATTTGGTGA+AGG 0.587275 3_3:-48787062 Msa0455760:CDS
AGTCAGGCAAAACAAAAGTA+CGG 0.587853 3_3:-48785085 Msa0455760:CDS
GCTTTAACAGACTGAAAAGG+TGG 0.589140 3_3:+48787086 None:intergenic
GATTTAGATCTAAGATACAA+TGG 0.590064 3_3:-48787186 Msa0455760:exon
AGGATGAATCGTATTCCTGA+CGG 0.591780 3_3:+48784951 None:intergenic
AGTTAGAAAATGCAGTTCAA+AGG 0.592541 3_3:-48785027 Msa0455760:CDS
AAGCGGCAGAAGCTGCAGCT+CGG 0.596772 3_3:-48783764 Msa0455760:CDS
AGCACAGGTAGAAGCTGTGA+AGG 0.598567 3_3:-48783949 Msa0455760:CDS
TAAGGTTAGAGGTGCATCTG+AGG 0.604601 3_3:-48784330 Msa0455760:CDS
CGCTCCCAGTCTAAAACCAG+AGG 0.607341 3_3:-48787129 Msa0455760:CDS
CGAGACAATGAATGAAATTG+CGG 0.608177 3_3:-48784636 Msa0455760:CDS
GCCAAAAGCTTATTCTGCTG+AGG 0.610112 3_3:-48787006 Msa0455760:intron
AGATTACAGTGCTAACTGAA+AGG 0.611910 3_3:-48784106 Msa0455760:CDS
AACTATACAGGATTCTCACC+AGG 0.615709 3_3:+48783537 None:intergenic
TTGAGGGTGAGCTTCGAAGG+TGG 0.626759 3_3:-48783806 Msa0455760:CDS
GTCTCTAAAACGGAAAGTCG+AGG 0.629664 3_3:-48784012 Msa0455760:CDS
TGTTAATGAAGTGTGCTGGA+AGG 0.629758 3_3:-48783439 Msa0455760:three_prime_UTR
CATCCGAAACTGAGGAAGCA+CGG 0.630067 3_3:-48784280 Msa0455760:CDS
TGGAGCTTGAAAGGGCCCAA+AGG 0.633150 3_3:-48785189 Msa0455760:CDS
CTTGGTAGAGACTCTGAAGG+TGG 0.634968 3_3:-48784486 Msa0455760:CDS
TTCACTTCCAATGTTGTACG+AGG 0.636771 3_3:+48783666 None:intergenic
TGCTGCAATGACAATATCGA+CGG 0.647577 3_3:-48784045 Msa0455760:CDS
TCAGTTAACATCCGAAACTG+AGG 0.648666 3_3:-48784288 Msa0455760:CDS
ACTTCCAATGTTGTACGAGG+AGG 0.662570 3_3:+48783669 None:intergenic
CTTTAACAGACTGAAAAGGT+GGG 0.663688 3_3:+48787087 None:intergenic
TGTGAAGGCTAGCGAAAACG+AGG 0.665471 3_3:-48783934 Msa0455760:CDS
TATGAAAACTGCAACACAGG+AGG 0.667826 3_3:-48783871 Msa0455760:CDS
GGCTGAAGCAGCAAAGAAAG+CGG 0.667928 3_3:-48783829 Msa0455760:CDS
GACATGCAGATTCCCAACTG+TGG 0.670611 3_3:+48784403 None:intergenic
ATGCTGCTAAGCAAGATCTG+AGG 0.688485 3_3:-48784979 Msa0455760:CDS
GTAAAGTAAAAGCATTCTTG+CGG 0.688514 3_3:-48783222 Msa0455760:three_prime_UTR
AAGCTTGGTAGAGACTCTGA+AGG 0.694026 3_3:-48784489 Msa0455760:CDS
TGCAATGACAATATCGACGG+AGG 0.702839 3_3:-48784042 Msa0455760:CDS
CCGAAACTGAGGAAGCACGG+CGG 0.740064 3_3:-48784277 Msa0455760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTGTTTACATTTTTT+GGG - chr3_3:48783804-48783823 Msa0455760:CDS 10.0%
!!! TTTGAATTTATTTTATCTTT+TGG + chr3_3:48784781-48784800 None:intergenic 10.0%
!! TATAAATATATGCTTATAAT+AGG - chr3_3:48784947-48784966 Msa0455760:CDS 10.0%
!! ATAAATATATGCTTATAATA+GGG - chr3_3:48784948-48784967 Msa0455760:CDS 10.0%
!!! TGTTATTTCTATTAAAAAAT+GGG + chr3_3:48785419-48785438 None:intergenic 10.0%
!!! GTAATATTGTTTACATTTTT+TGG - chr3_3:48783803-48783822 Msa0455760:CDS 15.0%
!!! TATATTATTGTGGTTTTTAA+AGG - chr3_3:48783953-48783972 Msa0455760:CDS 15.0%
!!! ATATTATTGTGGTTTTTAAA+GGG - chr3_3:48783954-48783973 Msa0455760:CDS 15.0%
!!! TAATCTTTTAAATTGGAATT+TGG + chr3_3:48784206-48784225 None:intergenic 15.0%
!!! CAACAAATAATCTTTTAAAT+TGG + chr3_3:48784213-48784232 None:intergenic 15.0%
!!! GTTATTTCTATTAAAAAATG+GGG + chr3_3:48785418-48785437 None:intergenic 15.0%
!!! CTGTTATTTCTATTAAAAAA+TGG + chr3_3:48785420-48785439 None:intergenic 15.0%
!!! CTTTATTAGTAATAACTTTT+CGG - chr3_3:48785531-48785550 Msa0455760:intron 15.0%
!! AAAGATATTAAATCTGTATT+TGG - chr3_3:48785771-48785790 Msa0455760:intron 15.0%
!! AAAAAAATTGATACATGTTA+TGG + chr3_3:48786040-48786059 None:intergenic 15.0%
!!! AAAAAATCAAAACTTTTAAG+AGG + chr3_3:48786153-48786172 None:intergenic 15.0%
!!! ATAGATTTAAATTTTTCTAC+TGG + chr3_3:48788227-48788246 None:intergenic 15.0%
!! GTAGAAAAATTTAAATCTAT+TGG - chr3_3:48788227-48788246 Msa0455760:intron 15.0%
!! TTTATTGTATTTGAGAATCT+GGG - chr3_3:48783397-48783416 Msa0455760:three_prime_UTR 20.0%
!!! ATTATTTTGTGTTTTCATGA+TGG - chr3_3:48783426-48783445 Msa0455760:three_prime_UTR 20.0%
!!! TTATTTTGTGTTTTCATGAT+GGG - chr3_3:48783427-48783446 Msa0455760:three_prime_UTR 20.0%
!! ATATAAAAGAAGCTATTGAT+AGG - chr3_3:48784028-48784047 Msa0455760:CDS 20.0%
!! TATGTTTGAAGATATATTTC+TGG - chr3_3:48784244-48784263 Msa0455760:CDS 20.0%
!!! AAGATATATTTCTGGAATTT+GGG - chr3_3:48784252-48784271 Msa0455760:CDS 20.0%
!! TATCTTAGATCTAAATCTTA+AGG + chr3_3:48784383-48784402 None:intergenic 20.0%
!! TGTAAAACTAAAAACAACAA+TGG - chr3_3:48784643-48784662 Msa0455760:CDS 20.0%
!! AAACATATCCTAAAATTTAC+AGG + chr3_3:48784683-48784702 None:intergenic 20.0%
!!! TGTAAATTTTAGGATATGTT+TGG - chr3_3:48784682-48784701 Msa0455760:CDS 20.0%
!!! TTTTTCTATAGAAAGTGAAA+AGG + chr3_3:48785092-48785111 None:intergenic 20.0%
!! TGAATATCAAATTGAAGAAT+AGG + chr3_3:48785473-48785492 None:intergenic 20.0%
!! TGCAATAAAGTTCTATTATA+AGG + chr3_3:48785574-48785593 None:intergenic 20.0%
!!! ACTTAATGTTGTTATTTACA+TGG + chr3_3:48785896-48785915 None:intergenic 20.0%
!! AACAACATTAAGTAAAACTA+AGG - chr3_3:48785903-48785922 Msa0455760:intron 20.0%
!! TAAAACTTATTACTGAATCT+AGG - chr3_3:48786431-48786450 Msa0455760:intron 20.0%
!! AAAACTTATTACTGAATCTA+GGG - chr3_3:48786432-48786451 Msa0455760:intron 20.0%
!! TCGAAGAAAATTAATATTAG+TGG - chr3_3:48787957-48787976 Msa0455760:intron 20.0%
! CTTTATTGTATTTGAGAATC+TGG - chr3_3:48783396-48783415 Msa0455760:three_prime_UTR 25.0%
! AAAGGAACCATAATAAAGTA+AGG + chr3_3:48783480-48783499 None:intergenic 25.0%
!! TCATTTTCATGTTATGTTTG+CGG - chr3_3:48783516-48783535 Msa0455760:three_prime_UTR 25.0%
!!! TCTGTCATTTTAAACATACT+TGG - chr3_3:48783554-48783573 Msa0455760:CDS 25.0%
!!! TGATGTTTTTTTCATTCTGA+AGG - chr3_3:48783696-48783715 Msa0455760:CDS 25.0%
! TTTCAAACTGAAAAAACCTT+TGG - chr3_3:48783724-48783743 Msa0455760:CDS 25.0%
! CAACTTAATATTTCAACCAA+AGG + chr3_3:48783743-48783762 None:intergenic 25.0%
! TCCTGAAAATTCTAATGTAT+TGG - chr3_3:48783856-48783875 Msa0455760:CDS 25.0%
! CCTGAAAATTCTAATGTATT+GGG - chr3_3:48783857-48783876 Msa0455760:CDS 25.0%
! GTTTAACAAGCATTATTAGT+TGG - chr3_3:48783908-48783927 Msa0455760:CDS 25.0%
! TGTGTAACTGTATATTATTG+TGG - chr3_3:48783943-48783962 Msa0455760:CDS 25.0%
!!! GAAGATATATTTCTGGAATT+TGG - chr3_3:48784251-48784270 Msa0455760:CDS 25.0%
!!! TCTTCTACTATGTTTTTAAC+AGG - chr3_3:48784344-48784363 Msa0455760:CDS 25.0%
!! GATTTAGATCTAAGATACAA+TGG - chr3_3:48784386-48784405 Msa0455760:CDS 25.0%
!!! TTAGTTTTACAACATCACAA+AGG + chr3_3:48784634-48784653 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATT+AGG - chr3_3:48784857-48784876 Msa0455760:CDS 25.0%
! AGACAATATAAGACCTAATT+TGG + chr3_3:48784873-48784892 None:intergenic 25.0%
! AGGAAATCAAAAAAAATTCC+AGG + chr3_3:48785007-48785026 None:intergenic 25.0%
! TTTCTATAGAAAAACTGCAA+CGG - chr3_3:48785098-48785117 Msa0455760:CDS 25.0%
! AACATAAAAGAATGTTGACA+TGG + chr3_3:48785276-48785295 None:intergenic 25.0%
! AACATATGAAAAGAAACACA+AGG + chr3_3:48785447-48785466 None:intergenic 25.0%
!! GATTATCTGAAGTTGTAATT+AGG - chr3_3:48785625-48785644 Msa0455760:intron 25.0%
! GTACAGAGTATATACAATTT+AGG + chr3_3:48785677-48785696 None:intergenic 25.0%
!!! ATCTTGTTTCTAATTGTCAT+AGG + chr3_3:48785720-48785739 None:intergenic 25.0%
! AATTAGAAACAAGATTTACG+AGG - chr3_3:48785725-48785744 Msa0455760:intron 25.0%
! ATCTGTATTTGGTTATAAGA+TGG - chr3_3:48785782-48785801 Msa0455760:intron 25.0%
! ATGAGATATTCCTACTTAAA+TGG + chr3_3:48785818-48785837 None:intergenic 25.0%
! ATTTAAGTAGGAATATCTCA+TGG - chr3_3:48785817-48785836 Msa0455760:intron 25.0%
!!! AATGTTGTTATTTACATGGA+AGG + chr3_3:48785892-48785911 None:intergenic 25.0%
! CTTGTACAAATCTTTGATAA+TGG + chr3_3:48785989-48786008 None:intergenic 25.0%
! TTATCAAAGATTTGTACAAG+TGG - chr3_3:48785989-48786008 Msa0455760:intron 25.0%
! AATAAGATTACATAGTTCAG+TGG + chr3_3:48786177-48786196 None:intergenic 25.0%
!! ATTTTCTCTTTCTCATTTTG+TGG - chr3_3:48786233-48786252 Msa0455760:intron 25.0%
! AAAAGAAATTTCAGCTGTAA+AGG - chr3_3:48786729-48786748 Msa0455760:intron 25.0%
!! TTTCTTTTTGGATTGTTCAA+GGG + chr3_3:48786854-48786873 None:intergenic 25.0%
!! ATTTCTTTTTGGATTGTTCA+AGG + chr3_3:48786855-48786874 None:intergenic 25.0%
!! CAAAGCAAGTAATTTCTTTT+TGG + chr3_3:48786866-48786885 None:intergenic 25.0%
!!! GAAATTACTTGCTTTGAAAA+AGG - chr3_3:48786870-48786889 Msa0455760:intron 25.0%
!! TTCAAGACTTTTTGTGATTT+CGG + chr3_3:48786905-48786924 None:intergenic 25.0%
! TTTCATGTCAGCTAATTTAT+CGG + chr3_3:48787589-48787608 None:intergenic 25.0%
! ATATTAGTGGTATCTTTCAA+AGG - chr3_3:48787970-48787989 Msa0455760:intron 25.0%
!! ATTGTATGGTGTTAATAGTT+TGG - chr3_3:48788164-48788183 Msa0455760:intron 25.0%
!! AATAGTTTGGTGACAAATTA+TGG - chr3_3:48788177-48788196 Msa0455760:intron 25.0%
!! ATAGTTTGGTGACAAATTAT+GGG - chr3_3:48788178-48788197 Msa0455760:intron 25.0%
TGAGCTACCTTACTTTATTA+TGG - chr3_3:48783470-48783489 Msa0455760:three_prime_UTR 30.0%
GAAACCACAAAACAAAACAA+AGG + chr3_3:48783498-48783517 None:intergenic 30.0%
! CCCAATACATTAGAATTTTC+AGG + chr3_3:48783860-48783879 None:intergenic 30.0%
!! GGTTTTTAAAGGGTCTTAAT+TGG - chr3_3:48783964-48783983 Msa0455760:CDS 30.0%
!! TTTTAAAGGGTCTTAATTGG+TGG - chr3_3:48783967-48783986 Msa0455760:CDS 30.0%
CATACAATCAGTAATACTAC+TGG + chr3_3:48784122-48784141 None:intergenic 30.0%
! CAGTAGTATTACTGATTGTA+TGG - chr3_3:48784120-48784139 Msa0455760:CDS 30.0%
AAAGTCAAGATAGACATGAT+TGG + chr3_3:48784150-48784169 None:intergenic 30.0%
!! CTACTATGTTTTTAACAGGT+TGG - chr3_3:48784348-48784367 Msa0455760:CDS 30.0%
ATACAATGGTTGCAAAAATC+CGG - chr3_3:48784400-48784419 Msa0455760:CDS 30.0%
!!! AATAAGCTTTTGGCTTCTTA+AGG + chr3_3:48784560-48784579 None:intergenic 30.0%
! CAGTGTATCCTGTAAATTTT+AGG - chr3_3:48784672-48784691 Msa0455760:CDS 30.0%
!!! GGTGATTTATTGATTTTTCC+TGG - chr3_3:48784986-48785005 Msa0455760:CDS 30.0%
! CATTCTTTTATGTTTCAGCA+TGG - chr3_3:48785282-48785301 Msa0455760:CDS 30.0%
! AAAAAATGGGGTATTTCAAC+AGG + chr3_3:48785406-48785425 None:intergenic 30.0%
GAATATCTCATGGATATGAA+GGG - chr3_3:48785827-48785846 Msa0455760:intron 30.0%
TACATTCTAAGCTTGAAAGA+AGG + chr3_3:48786214-48786233 None:intergenic 30.0%
!!! TAACTTGTTCAGCTCTTTTT+CGG + chr3_3:48786317-48786336 None:intergenic 30.0%
AAAAGAGCTGAACAAGTTAA+AGG - chr3_3:48786318-48786337 Msa0455760:intron 30.0%
! ATTTTCTAACTCTTCTTTCC+AGG + chr3_3:48786536-48786555 None:intergenic 30.0%
AGTTAGAAAATGCAGTTCAA+AGG - chr3_3:48786545-48786564 Msa0455760:intron 30.0%
! TCAAGACTTTTTGTGATTTC+GGG + chr3_3:48786904-48786923 None:intergenic 30.0%
GAAAAAACTGAAAGAAGCAA+CGG - chr3_3:48787398-48787417 Msa0455760:intron 30.0%
TAAATTAGCTGACATGAAAG+TGG - chr3_3:48787590-48787609 Msa0455760:intron 30.0%
!!! AAACGAGGTTTTGAAAAAGT+TGG - chr3_3:48787653-48787672 Msa0455760:intron 30.0%
! TTTTGAATCCTATAATGCTG+AGG + chr3_3:48787870-48787889 None:intergenic 30.0%
GAAGAAAAGCAATATTGTTG+AGG - chr3_3:48787992-48788011 Msa0455760:intron 30.0%
AAAAGCAATATTGTTGAGGA+TGG - chr3_3:48787996-48788015 Msa0455760:intron 30.0%
! ATTTTGTTAATGAAGTGTGC+TGG - chr3_3:48788129-48788148 Msa0455760:intron 30.0%
!!! GGAAGGAAAGTTTTATTGTA+TGG - chr3_3:48788150-48788169 Msa0455760:intron 30.0%
GGACATGCATTATATGTAAA+TGG - chr3_3:48788199-48788218 Msa0455760:intron 30.0%
TGATATTAAGCTTTCATGAC+TGG - chr3_3:48788278-48788297 Msa0455760:five_prime_UTR 30.0%
!! GTAAAGTAAAAGCATTCTTG+CGG - chr3_3:48788350-48788369 Msa0455760:five_prime_UTR 30.0%
!! GTTGCTGATTCAGTTAAAGA+TGG - chr3_3:48783370-48783389 Msa0455760:three_prime_UTR 35.0%
!!! GGTTCCTTTGTTTTGTTTTG+TGG - chr3_3:48783491-48783510 Msa0455760:three_prime_UTR 35.0%
TCAGACACAAACAAAGTCAA+GGG + chr3_3:48783629-48783648 None:intergenic 35.0%
TTCAGACACAAACAAAGTCA+AGG + chr3_3:48783630-48783649 None:intergenic 35.0%
TCTTAATTGGTGGAAGATTG+TGG - chr3_3:48783977-48783996 Msa0455760:CDS 35.0%
CTTTAACAGACTGAAAAGGT+GGG + chr3_3:48784488-48784507 None:intergenic 35.0%
TTCACAAGTTATCTTAGCGT+AGG - chr3_3:48784828-48784847 Msa0455760:CDS 35.0%
!! TTCTGGAACTGACACTATAT+CGG + chr3_3:48785034-48785053 None:intergenic 35.0%
AGTGAAAAGGCAAGATGTAA+GGG + chr3_3:48785079-48785098 None:intergenic 35.0%
AAGTGAAAAGGCAAGATGTA+AGG + chr3_3:48785080-48785099 None:intergenic 35.0%
GTTTGCATAACATTGAAGTC+TGG + chr3_3:48785143-48785162 None:intergenic 35.0%
! AAAAGGAGAGTATGAGTTAG+AGG + chr3_3:48785243-48785262 None:intergenic 35.0%
ACACAGATACAAAGAAGACA+TGG + chr3_3:48785337-48785356 None:intergenic 35.0%
ATGTCTTCTTTGTATCTGTG+TGG - chr3_3:48785336-48785355 Msa0455760:intron 35.0%
! ATCTGAAGTTGTAATTAGGC+TGG - chr3_3:48785629-48785648 Msa0455760:intron 35.0%
! TGTGATGTTGCCATTTAAGT+AGG - chr3_3:48785805-48785824 Msa0455760:intron 35.0%
GGAATATCTCATGGATATGA+AGG - chr3_3:48785826-48785845 Msa0455760:intron 35.0%
GTTCTTGAATCGAATGAAAC+AGG + chr3_3:48785858-48785877 None:intergenic 35.0%
AAAGATTTGTACAAGTGGTG+AGG - chr3_3:48785994-48786013 Msa0455760:intron 35.0%
AAAGAACGCTGAAACTACTA+AGG - chr3_3:48786348-48786367 Msa0455760:intron 35.0%
AGTCAGGCAAAACAAAAGTA+CGG - chr3_3:48786487-48786506 Msa0455760:intron 35.0%
AGAAGCTGAAAATGCAATGA+AGG - chr3_3:48786678-48786697 Msa0455760:intron 35.0%
AAAAAGTCTTGAAGCACAGT+TGG - chr3_3:48786912-48786931 Msa0455760:intron 35.0%
CGCAATTTCATTCATTGTCT+CGG + chr3_3:48786938-48786957 None:intergenic 35.0%
CGAGACAATGAATGAAATTG+CGG - chr3_3:48786936-48786955 Msa0455760:intron 35.0%
AAACAAAAGATCGTCTGACT+TGG - chr3_3:48786978-48786997 Msa0455760:intron 35.0%
! CTCTGTGAAAACTGTTACTT+CGG - chr3_3:48787002-48787021 Msa0455760:intron 35.0%
AGAAAACACTCTTAGAAGCT+TGG - chr3_3:48787068-48787087 Msa0455760:CDS 35.0%
! GAAAGAACATTCTGAGTTGA+AGG - chr3_3:48787125-48787144 Msa0455760:CDS 35.0%
AGATTACAGTGCTAACTGAA+AGG - chr3_3:48787466-48787485 Msa0455760:intron 35.0%
AGATATGAAAACTGCAACAC+AGG - chr3_3:48787698-48787717 Msa0455760:intron 35.0%
TTCTGATGACATCTGTGTTT+CGG + chr3_3:48787841-48787860 None:intergenic 35.0%
AATCATCTCCTCAGCATTAT+AGG - chr3_3:48787859-48787878 Msa0455760:intron 35.0%
AGCTTCACAACAAACTATAC+AGG + chr3_3:48788050-48788069 None:intergenic 35.0%
! TGATGATTTGTGTGTAGTTG+AGG - chr3_3:48788095-48788114 Msa0455760:intron 35.0%
GTATTTGAGAATCTGGGTTG+TGG - chr3_3:48783403-48783422 Msa0455760:three_prime_UTR 40.0%
!!! CATGATGGGTTTTTCTTGTG+TGG - chr3_3:48783441-48783460 Msa0455760:three_prime_UTR 40.0%
!! CAGTAATACTACTGGCTCTT+AGG + chr3_3:48784114-48784133 None:intergenic 40.0%
GCTTTAACAGACTGAAAAGG+TGG + chr3_3:48784489-48784508 None:intergenic 40.0%
! GCAGCTTTAACAGACTGAAA+AGG + chr3_3:48784492-48784511 None:intergenic 40.0%
AAAGCTGCTGTGTCTCTATT+TGG - chr3_3:48784504-48784523 Msa0455760:CDS 40.0%
!!! TTTGGTGAAGGTGCTTTTTC+TGG - chr3_3:48784522-48784541 Msa0455760:CDS 40.0%
!!! TTGGTGAAGGTGCTTTTTCT+GGG - chr3_3:48784523-48784542 Msa0455760:CDS 40.0%
! ACCTCAGCAGAATAAGCTTT+TGG + chr3_3:48784570-48784589 None:intergenic 40.0%
ACTGACACTATATCGGTATC+AGG + chr3_3:48785027-48785046 None:intergenic 40.0%
! GTTAGGCAAGTGTGGTTTTT+CGG + chr3_3:48785181-48785200 None:intergenic 40.0%
GAAAGAAGAAAGAGCGAGTT+AGG + chr3_3:48785198-48785217 None:intergenic 40.0%
GGAGTGAGAATCTATGTAGA+AGG + chr3_3:48785222-48785241 None:intergenic 40.0%
AATGTTGACATGGCAGTGAA+TGG + chr3_3:48785266-48785285 None:intergenic 40.0%
CAGATACAAAGAAGACATGG+TGG + chr3_3:48785334-48785353 None:intergenic 40.0%
GTTGTAATTAGGCTGGACTT+TGG - chr3_3:48785636-48785655 Msa0455760:intron 40.0%
AGGTGTCTCAACAATGTTCT+TGG - chr3_3:48785745-48785764 Msa0455760:intron 40.0%
! GTTCGTTCACTAGAGAGTTT+TGG - chr3_3:48786267-48786286 Msa0455760:intron 40.0%
! CAAATCATCGACTGTCCTTT+GGG + chr3_3:48786401-48786420 None:intergenic 40.0%
! TCAAATCATCGACTGTCCTT+TGG + chr3_3:48786402-48786421 None:intergenic 40.0%
AACAGAAGCTGCAAAAAGTC+AGG - chr3_3:48786471-48786490 Msa0455760:intron 40.0%
AGGATGAATCGTATTCCTGA+CGG + chr3_3:48786624-48786643 None:intergenic 40.0%
GCAAACAAAGCTAGCATATG+TGG - chr3_3:48786762-48786781 Msa0455760:intron 40.0%
GAAGGAAAAAGAGTCCGAAT+TGG - chr3_3:48787143-48787162 Msa0455760:CDS 40.0%
! GCTGAAGAATCTAAGGTTAG+AGG - chr3_3:48787231-48787250 Msa0455760:intron 40.0%
TCAGTTAACATCCGAAACTG+AGG - chr3_3:48787284-48787303 Msa0455760:intron 40.0%
TGCTGCAATGACAATATCGA+CGG - chr3_3:48787527-48787546 Msa0455760:intron 40.0%
! AGGAGTTCGAGTCTCTAAAA+CGG - chr3_3:48787550-48787569 Msa0455760:intron 40.0%
!!! CGAGGTTTTGAAAAAGTTGG+AGG - chr3_3:48787656-48787675 Msa0455760:intron 40.0%
TATGAAAACTGCAACACAGG+AGG - chr3_3:48787701-48787720 Msa0455760:intron 40.0%
TTCACTTCCAATGTTGTACG+AGG + chr3_3:48787909-48787928 None:intergenic 40.0%
AACTATACAGGATTCTCACC+AGG + chr3_3:48788038-48788057 None:intergenic 40.0%
TGTTAATGAAGTGTGCTGGA+AGG - chr3_3:48788133-48788152 Msa0455760:intron 40.0%
AGCTTTCATGACTGGTAGAT+TGG - chr3_3:48788286-48788305 Msa0455760:five_prime_UTR 40.0%
TATCTCTCCCTTTCACACAT+AGG + chr3_3:48788326-48788345 None:intergenic 40.0%
! GAGAGAGAGAGAGATGGTTT+TGG + chr3_3:48783245-48783264 None:intergenic 45.0%
GAGCTTTCAGCTGTGCAAAT+AGG + chr3_3:48783838-48783857 None:intergenic 45.0%
GGTGGAAGATTGTGGAATCA+TGG - chr3_3:48783985-48784004 Msa0455760:CDS 45.0%
AAAATCCGGCAAACTGCTAC+TGG - chr3_3:48784414-48784433 Msa0455760:CDS 45.0%
!!! CCAACCTCTGGTTTTAGACT+GGG + chr3_3:48784450-48784469 None:intergenic 45.0%
!!! TCCAACCTCTGGTTTTAGAC+TGG + chr3_3:48784451-48784470 None:intergenic 45.0%
! GCTGTGTCTCTATTTGGTGA+AGG - chr3_3:48784510-48784529 Msa0455760:CDS 45.0%
!!! TGGTGAAGGTGCTTTTTCTG+GGG - chr3_3:48784524-48784543 Msa0455760:CDS 45.0%
!!! GCTTTTGGCTTCTTAAGGAC+AGG + chr3_3:48784555-48784574 None:intergenic 45.0%
GCCAAAAGCTTATTCTGCTG+AGG - chr3_3:48784566-48784585 Msa0455760:CDS 45.0%
! ATAGGGCTAGAAAGTGCAGA+CGG - chr3_3:48784965-48784984 Msa0455760:CDS 45.0%
! TTGTGTGCAGAGCATTCTTC+TGG + chr3_3:48785051-48785070 None:intergenic 45.0%
ATGCAAACTTCTTTGCCCGA+AGG - chr3_3:48785155-48785174 Msa0455760:CDS 45.0%
!! AAGTGTGGTTTTTCGGCCTT+CGG + chr3_3:48785174-48785193 None:intergenic 45.0%
GACATGGCAGTGAATGGAAA+AGG + chr3_3:48785260-48785279 None:intergenic 45.0%
!! TCACTAGAGAGTTTTGGCCA+AGG - chr3_3:48786273-48786292 Msa0455760:intron 45.0%
TACATGAAGTTGCGTCTCCT+TGG + chr3_3:48786293-48786312 None:intergenic 45.0%
TACTAAGGCTCAAGCTCTTG+TGG - chr3_3:48786363-48786382 Msa0455760:intron 45.0%
AAGCTCTTGTGGAGCTTGAA+AGG - chr3_3:48786374-48786393 Msa0455760:intron 45.0%
AGCTCTTGTGGAGCTTGAAA+GGG - chr3_3:48786375-48786394 Msa0455760:intron 45.0%
! CAAAAGTACGGTGACTCTGA+TGG - chr3_3:48786499-48786518 Msa0455760:intron 45.0%
ATGCTGCTAAGCAAGATCTG+AGG - chr3_3:48786593-48786612 Msa0455760:intron 45.0%
GGATGAATCGTATTCCTGAC+GGG + chr3_3:48786623-48786642 None:intergenic 45.0%
ATCACAGCAACAGCAAGCAT+TGG - chr3_3:48786786-48786805 Msa0455760:intron 45.0%
! ACTGTTACTTCGGAGCTTGA+TGG - chr3_3:48787012-48787031 Msa0455760:CDS 45.0%
AAGCTTGGTAGAGACTCTGA+AGG - chr3_3:48787083-48787102 Msa0455760:CDS 45.0%
TCCGAATTGGAATCCACAGT+TGG - chr3_3:48787156-48787175 Msa0455760:CDS 45.0%
CCCAACTGTGGATTCCAATT+CGG + chr3_3:48787160-48787179 None:intergenic 45.0%
CCGAATTGGAATCCACAGTT+GGG - chr3_3:48787157-48787176 Msa0455760:CDS 45.0%
CTTAGATTCTTCAGCCGAAC+AGG + chr3_3:48787226-48787245 None:intergenic 45.0%
CTGTTCGGCTGAAGAATCTA+AGG - chr3_3:48787224-48787243 Msa0455760:intron 45.0%
! TAAGGTTAGAGGTGCATCTG+AGG - chr3_3:48787242-48787261 Msa0455760:intron 45.0%
TGAAGCTACCAAGCTTGCAT+TGG - chr3_3:48787365-48787384 Msa0455760:intron 45.0%
TGCTTCTTCCAATGCAAGCT+TGG + chr3_3:48787376-48787395 None:intergenic 45.0%
GCATCTACATCGTCAGAATC+CGG - chr3_3:48787504-48787523 Msa0455760:intron 45.0%
CGATATTGTCATTGCAGCAC+CGG + chr3_3:48787526-48787545 None:intergenic 45.0%
TGCAATGACAATATCGACGG+AGG - chr3_3:48787530-48787549 Msa0455760:intron 45.0%
!! GTCTCTAAAACGGAAAGTCG+AGG - chr3_3:48787560-48787579 Msa0455760:intron 45.0%
AAAGTTGGAGGCAACTCAGA+AGG - chr3_3:48787668-48787687 Msa0455760:intron 45.0%
AACACAGGAGGCCTTGAAAA+AGG - chr3_3:48787713-48787732 Msa0455760:intron 45.0%
!! AGCCATCTCAGCCTTTTTCA+AGG + chr3_3:48787727-48787746 None:intergenic 45.0%
GGAGCGAGAACAGAAAAAAG+CGG - chr3_3:48787791-48787810 Msa0455760:intron 45.0%
ACTTCCAATGTTGTACGAGG+AGG + chr3_3:48787906-48787925 None:intergenic 45.0%
! GGATCTGCTTCTTATTTGCC+TGG - chr3_3:48788017-48788036 Msa0455760:intron 45.0%
CACACATAGGTCTCGTGAAA+GGG + chr3_3:48788313-48788332 None:intergenic 45.0%
TCACACATAGGTCTCGTGAA+AGG + chr3_3:48788314-48788333 None:intergenic 45.0%
TCACGAGACCTATGTGTGAA+AGG - chr3_3:48788315-48788334 Msa0455760:five_prime_UTR 45.0%
CACGAGACCTATGTGTGAAA+GGG - chr3_3:48788316-48788335 Msa0455760:five_prime_UTR 45.0%
!!! TTTTTTTGTTAATTTTTTTT+TGG - chr3_3:48783340-48783359 Msa0455760:three_prime_UTR 5.0%
GAGAGAGAGAGAGAGAGAGA+TGG + chr3_3:48783251-48783270 None:intergenic 50.0%
!!! TCTGGTTTTAGACTGGGAGC+GGG + chr3_3:48784444-48784463 None:intergenic 50.0%
!!! CTCTGGTTTTAGACTGGGAG+CGG + chr3_3:48784445-48784464 None:intergenic 50.0%
! CCCAGTCTAAAACCAGAGGT+TGG - chr3_3:48784447-48784466 Msa0455760:CDS 50.0%
GTGTCAATCTCTCCAACCTC+TGG + chr3_3:48784462-48784481 None:intergenic 50.0%
AACAGACTGAAAAGGTGGGC+TGG + chr3_3:48784484-48784503 None:intergenic 50.0%
!! TCAGAGTGCTGGCTTGCAAT+GGG + chr3_3:48784913-48784932 None:intergenic 50.0%
TCTTAGCAGAGTCAGAGTGC+TGG + chr3_3:48784924-48784943 None:intergenic 50.0%
!! AGTGTGGTTTTTCGGCCTTC+GGG + chr3_3:48785173-48785192 None:intergenic 50.0%
AAGAGCGAGTTAGGCAAGTG+TGG + chr3_3:48785189-48785208 None:intergenic 50.0%
GGTGACTCTGATGGAGCAAA+CGG - chr3_3:48786508-48786527 Msa0455760:intron 50.0%
AGATCTGAGGAAAACCCGTC+AGG - chr3_3:48786606-48786625 Msa0455760:intron 50.0%
AGCTGACACTCTTGCATTCG+AGG + chr3_3:48786644-48786663 None:intergenic 50.0%
TGCGGCTCTGCATACAGAAA+TGG - chr3_3:48786954-48786973 Msa0455760:intron 50.0%
! CTTGGTAGAGACTCTGAAGG+TGG - chr3_3:48787086-48787105 Msa0455760:CDS 50.0%
GACATGCAGATTCCCAACTG+TGG + chr3_3:48787172-48787191 None:intergenic 50.0%
CATCCGAAACTGAGGAAGCA+CGG - chr3_3:48787292-48787311 Msa0455760:intron 50.0%
AGCACAGGTAGAAGCTGTGA+AGG - chr3_3:48787623-48787642 Msa0455760:intron 50.0%
TGTGAAGGCTAGCGAAAACG+AGG - chr3_3:48787638-48787657 Msa0455760:intron 50.0%
GGCCTTGAAAAAGGCTGAGA+TGG - chr3_3:48787722-48787741 Msa0455760:intron 50.0%
GGCTGAAGCAGCAAAGAAAG+CGG - chr3_3:48787743-48787762 Msa0455760:intron 50.0%
AGCAGCAAAGAAAGCGGTTG+AGG - chr3_3:48787749-48787768 Msa0455760:intron 50.0%
GCAGCAAAGAAAGCGGTTGA+GGG - chr3_3:48787750-48787769 Msa0455760:intron 50.0%
TCCACCTCCTCGTACAACAT+TGG - chr3_3:48787899-48787918 Msa0455760:intron 50.0%
TCCAATGTTGTACGAGGAGG+TGG + chr3_3:48787903-48787922 None:intergenic 50.0%
GAGAGCCAGTAGCAGTTTGC+CGG + chr3_3:48784422-48784441 None:intergenic 55.0%
! CGCTCCCAGTCTAAAACCAG+AGG - chr3_3:48784443-48784462 Msa0455760:CDS 55.0%
!! GTCAGAGTGCTGGCTTGCAA+TGG + chr3_3:48784914-48784933 None:intergenic 55.0%
TGGAGCTTGAAAGGGCCCAA+AGG - chr3_3:48786383-48786402 Msa0455760:intron 55.0%
GTCTGAGCTCGAAGCCTGTT+CGG - chr3_3:48787209-48787228 Msa0455760:five_prime_UTR 55.0%
! AGTGGATGCTGCGAAAGCAC+AGG - chr3_3:48787608-48787627 Msa0455760:intron 55.0%
TTGAGGGTGAGCTTCGAAGG+TGG - chr3_3:48787766-48787785 Msa0455760:intron 55.0%
CTGATGGAGCAAACGGTGCC+TGG - chr3_3:48786515-48786534 Msa0455760:intron 60.0%
CCGCCGTGCTTCCTCAGTTT+CGG + chr3_3:48787298-48787317 None:intergenic 60.0%
! CCGAAACTGAGGAAGCACGG+CGG - chr3_3:48787295-48787314 Msa0455760:intron 60.0%
! CGAAACTGAGGAAGCACGGC+GGG - chr3_3:48787296-48787315 Msa0455760:intron 60.0%
CGGTTGAGGGTGAGCTTCGA+AGG - chr3_3:48787763-48787782 Msa0455760:intron 60.0%
AGGGTGAGCTTCGAAGGTGG+CGG - chr3_3:48787769-48787788 Msa0455760:intron 60.0%
AAGCGGCAGAAGCTGCAGCT+CGG - chr3_3:48787808-48787827 Msa0455760:intron 60.0%
GGGTGAGCTTCGAAGGTGGC+GGG - chr3_3:48787770-48787789 Msa0455760:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 48783219 48788375 48783219 ID=Msa0455760;Name=Msa0455760
chr3_3 mRNA 48783219 48788375 48783219 ID=Msa0455760-mRNA-1;Parent=Msa0455760;Name=Msa0455760-mRNA-1;_AED=0.16;_eAED=0.16;_QI=167|1|1|1|0.5|0.33|3|320|652
chr3_3 exon 48783219 48785314 48783219 ID=Msa0455760-mRNA-1:exon:9173;Parent=Msa0455760-mRNA-1
chr3_3 exon 48787007 48787228 48787007 ID=Msa0455760-mRNA-1:exon:9172;Parent=Msa0455760-mRNA-1
chr3_3 exon 48788248 48788375 48788248 ID=Msa0455760-mRNA-1:exon:9171;Parent=Msa0455760-mRNA-1
chr3_3 five_prime_UTR 48788248 48788375 48788248 ID=Msa0455760-mRNA-1:five_prime_utr;Parent=Msa0455760-mRNA-1
chr3_3 five_prime_UTR 48787190 48787228 48787190 ID=Msa0455760-mRNA-1:five_prime_utr;Parent=Msa0455760-mRNA-1
chr3_3 CDS 48787007 48787189 48787007 ID=Msa0455760-mRNA-1:cds;Parent=Msa0455760-mRNA-1
chr3_3 CDS 48783539 48785314 48783539 ID=Msa0455760-mRNA-1:cds;Parent=Msa0455760-mRNA-1
chr3_3 three_prime_UTR 48783219 48783538 48783219 ID=Msa0455760-mRNA-1:three_prime_utr;Parent=Msa0455760-mRNA-1
Gene Sequence

>Msa0455760

ATGGTTGCAAAAATCCGGCAAACTGCTACTGGCTCTCCCGCTCCCAGTCTAAAACCAGAGGTTGGAGAGATTGACACCAGCCCACCTTTTCAGTCTGTTAAAGCTGCTGTGTCTCTATTTGGTGAAGGTGCTTTTTCTGGGGAAAGACCTGTCCTTAAGAAGCCAAAAGCTTATTCTGCTGAGAGAGTTTTGGCCAAGGAGACGCAACTTCATGTAGCCGAAAAAGAGCTGAACAAGTTAAAGGAACAAGTAAAGAACGCTGAAACTACTAAGGCTCAAGCTCTTGTGGAGCTTGAAAGGGCCCAAAGGACAGTCGATGATTTGACACAGAAGCTAAAACTTATTACTGAATCTAGGGAGTTAGCAACGAAAGCAACAGAAGCTGCAAAAAGTCAGGCAAAACAAAAGTACGGTGACTCTGATGGAGCAAACGGTGCCTGGAAAGAAGAGTTAGAAAATGCAGTTCAAAGGTATGCATCTATCATGACAGAACTTGATGCTGCTAAGCAAGATCTGAGGAAAACCCGTCAGGAATACGATTCATCCTCGAATGCAAGAGTGTCAGCTGTCAAGAGAACAGAAGAAGCTGAAAATGCAATGAAGGAAAACACAGAAAGAGTATCTGAGCTGTCAAAAGAAATTTCAGCTGTAAAGGAGTCAATTGAGCAAACAAAGCTAGCATATGTGGAATCACAGCAACAGCAAGCATTGGTATTATCTGAAAAAGATGCTCTTAGACAATCATACAAAGCTACCCTTGAACAATCCAAAAAGAAATTACTTGCTTTGAAAAAGGAATTTAATCCCGAAATCACAAAAAGTCTTGAAGCACAGTTGGCCGAGACAATGAATGAAATTGCGGCTCTGCATACAGAAATGGAAAACAAAAGATCGTCTGACTTGGACTCTGTGAAAACTGTTACTTCGGAGCTTGATGGTGCGAAAGAATCGCTGCAGAAAGTAGTAGATGAAGAAAACACTCTTAGAAGCTTGGTAGAGACTCTGAAGGTGGAACTAGAGAATGTAAAGAAAGAACATTCTGAGTTGAAGGAAAAAGAGTCCGAATTGGAATCCACAGTTGGGAATCTGCATGTCAAACTTCGCAAAAGTAAGTCTGAGCTCGAAGCCTGTTCGGCTGAAGAATCTAAGGTTAGAGGTGCATCTGAGGAAATGATCTTGACGCTGAGTCAGTTAACATCCGAAACTGAGGAAGCACGGCGGGAAGCAGAAGATATGAAGAACAAGACAGAAGAGCTAAAGAAAGAAGCTGAAGCTACCAAGCTTGCATTGGAAGAAGCAGAGAAAAAACTGAAAGAAGCAACGGAAGAAGCAGAAGCAGCAAAAGCAGCTGAAGCAAGTGCAATCGAGCAGATTACAGTGCTAACTGAAAGGACTAGTGCAAGACGTGCATCTACATCGTCAGAATCCGGTGCTGCAATGACAATATCGACGGAGGAGTTCGAGTCTCTAAAACGGAAAGTCGAGGAATCCGATAAATTAGCTGACATGAAAGTGGATGCTGCGAAAGCACAGGTAGAAGCTGTGAAGGCTAGCGAAAACGAGGTTTTGAAAAAGTTGGAGGCAACTCAGAAGGAGATTGAAGATATGAAAACTGCAACACAGGAGGCCTTGAAAAAGGCTGAGATGGCTGAAGCAGCAAAGAAAGCGGTTGAGGGTGAGCTTCGAAGGTGGCGGGAGCGAGAACAGAAAAAAGCGGCAGAAGCTGCAGCTCGGATACTAGCCGAAACACAGATGTCATCAGAATCATCTCCTCAGCATTATAGGATTCAAAAGCAGAATGTTCCACCTCCTCGTACAACATTGGAAGTGAAGAAGTTAGATAAAGAGAAGATTTCAGTTTCGAAGAAAATTAATATTAGTGGTATCTTTCAAAGGAAGAAAAGCAATATTGTTGAGGATGGATCTGCTTCTTATTTGCCTGGTGAGAATCCTGTATAG

Protein sequence

>Msa0455760

MVAKIRQTATGSPAPSLKPEVGEIDTSPPFQSVKAAVSLFGEGAFSGERPVLKKPKAYSAERVLAKETQLHVAEKELNKLKEQVKNAETTKAQALVELERAQRTVDDLTQKLKLITESRELATKATEAAKSQAKQKYGDSDGANGAWKEELENAVQRYASIMTELDAAKQDLRKTRQEYDSSSNARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIEQTKLAYVESQQQQALVLSEKDALRQSYKATLEQSKKKLLALKKEFNPEITKSLEAQLAETMNEIAALHTEMENKRSSDLDSVKTVTSELDGAKESLQKVVDEENTLRSLVETLKVELENVKKEHSELKEKESELESTVGNLHVKLRKSKSELEACSAEESKVRGASEEMILTLSQLTSETEEARREAEDMKNKTEELKKEAEATKLALEEAEKKLKEATEEAEAAKAAEASAIEQITVLTERTSARRASTSSESGAAMTISTEEFESLKRKVEESDKLADMKVDAAKAQVEAVKASENEVLKKLEATQKEIEDMKTATQEALKKAEMAEAAKKAVEGELRRWREREQKKAAEAAARILAETQMSSESSPQHYRIQKQNVPPPRTTLEVKKLDKEKISVSKKINISGIFQRKKSNIVEDGSASYLPGENPV*