AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549340 MtrunA17_Chr4g0033701 97.029 875 25 1 17 891 100 973 0.0 1738
Msa0549340 MtrunA17_Chr3g0118501 41.593 226 103 6 353 573 455 656 7.87e-38 152
Msa0549340 MtrunA17_Chr3g0118501 30.198 202 132 3 20 212 42 243 3.17e-25 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549340 AT2G43410.4 41.287 901 371 27 17 871 91 879 5.15e-173 525
Msa0549340 AT2G43410.3 41.287 901 371 27 17 871 91 879 5.15e-173 525
Msa0549340 AT2G43410.2 41.287 901 371 27 17 871 91 879 5.15e-173 525
Msa0549340 AT2G43410.6 39.866 893 352 28 17 871 91 836 1.35e-157 484
Msa0549340 AT2G43410.1 39.866 893 352 28 17 871 91 836 1.35e-157 484
Msa0549340 AT2G43410.5 40.493 852 349 28 66 871 1 740 1.01e-146 452
Msa0549340 AT4G12640.3 53.846 130 59 1 388 516 340 469 2.44e-35 144
Msa0549340 AT4G12640.3 37.500 80 50 0 136 215 18 97 9.49e-15 79.0
Msa0549340 AT4G12640.2 53.846 130 59 1 388 516 340 469 2.44e-35 144
Msa0549340 AT4G12640.2 37.500 80 50 0 136 215 18 97 9.49e-15 79.0
Msa0549340 AT4G12640.4 53.846 130 59 1 388 516 340 469 2.44e-35 144
Msa0549340 AT4G12640.4 37.500 80 50 0 136 215 18 97 9.49e-15 79.0
Msa0549340 AT4G12640.1 53.846 130 59 1 388 516 468 597 4.33e-35 144
Msa0549340 AT4G12640.1 29.064 203 136 2 21 215 23 225 1.12e-24 111

Find 282 sgRNAs with CRISPR-Local

Find 602 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTATCAGCCTCCAATTC+TGG 0.097634 4_1:+44446562 None:intergenic
GGTCCTGAATCTGTTGTTTC+TGG 0.116220 4_1:-44448784 Msa0549340:CDS
GGGCTTTCTGATTCTTATTC+TGG 0.153383 4_1:-44449516 Msa0549340:CDS
TAAAGTTGTATTGTCAAATT+TGG 0.168038 4_1:+44447692 None:intergenic
ACCGATCCACAAAATATTAT+TGG 0.169786 4_1:+44449224 None:intergenic
GCTCTAAACACTGCTGCTTC+TGG 0.180393 4_1:-44447345 Msa0549340:CDS
GAAGCTGACTTCCGTAAATT+TGG 0.196602 4_1:-44450371 Msa0549340:CDS
TTCTCTCAATTTCACCAAAA+AGG 0.199462 4_1:+44449151 None:intergenic
CCTGATAGTGAAAATGATTT+TGG 0.203529 4_1:-44447768 Msa0549340:CDS
GTGTTTGCTGCTGCTGTATT+TGG 0.231145 4_1:+44446494 None:intergenic
CAATTTAGATGATGCTATTC+AGG 0.239202 4_1:-44450291 Msa0549340:CDS
TAGGATCAAGGGCATGATTA+TGG 0.245432 4_1:-44449561 Msa0549340:CDS
ATGGAAACCAATCTCAATTA+TGG 0.247838 4_1:-44447170 Msa0549340:CDS
AGATAAGGCAATAGAATTAT+TGG 0.248232 4_1:+44446702 None:intergenic
TGACAATACAACTTTATTCT+TGG 0.252905 4_1:-44447685 Msa0549340:CDS
AAAGGATGGTGGTTATTATT+AGG 0.257498 4_1:+44446793 None:intergenic
GGAAAGCCTTTCTGAGTATT+GGG 0.258137 4_1:+44446862 None:intergenic
CCTCAACTTTACCAAATTTA+CGG 0.262943 4_1:+44450360 None:intergenic
AAGTCTTCCTTTGTTACAGC+TGG 0.289360 4_1:+44450395 None:intergenic
AAAACTTGTTCCTCCTTTGC+AGG 0.299893 4_1:+44447477 None:intergenic
CAATTTCAAGGCAAAAGCTT+TGG 0.304031 4_1:-44449537 Msa0549340:CDS
AACATACCAGTGCGGCCTTT+TGG 0.326240 4_1:-44448817 Msa0549340:CDS
CTCTAAACACTGCTGCTTCT+GGG 0.329449 4_1:-44447344 Msa0549340:CDS
TATTGGGTTGCTGGAAAGGC+TGG 0.336634 4_1:+44446719 None:intergenic
TCTTATCAGCCTCCAATTCT+GGG 0.337707 4_1:+44446563 None:intergenic
CCGATCCACAAAATATTATT+GGG 0.339050 4_1:+44449225 None:intergenic
CTGTCCAACCTGATCATATA+TGG 0.339151 4_1:-44448489 Msa0549340:CDS
CAATAGAATTATTGGGTTGC+TGG 0.347240 4_1:+44446710 None:intergenic
TCACCCTTCCTCCTCATTAG+AGG 0.348403 4_1:+44449255 None:intergenic
TCCATTTGTGCAGGTCGATA+TGG 0.350182 4_1:+44448916 None:intergenic
TGGAAAGCCTTTCTGAGTAT+TGG 0.351377 4_1:+44446861 None:intergenic
TATTAGATTGCTGGAAATGC+TGG 0.352756 4_1:+44446749 None:intergenic
TGAGATTGGTTTCCATCATT+AGG 0.353476 4_1:+44447177 None:intergenic
CCATTTCAGTCATCAGTATC+AGG 0.355693 4_1:-44446896 Msa0549340:CDS
GGTGGTTATTATTAGGTTGC+TGG 0.356161 4_1:+44446800 None:intergenic
AATACTCAGAAAGGCTTTCC+AGG 0.356895 4_1:-44446859 Msa0549340:CDS
TGCTCATCGATCTGAACATT+GGG 0.358626 4_1:+44449195 None:intergenic
GATAAGGCAATAGAATTATT+GGG 0.360190 4_1:+44446703 None:intergenic
GGAGATGGCCGTTTCCAGTT+TGG 0.361061 4_1:+44448724 None:intergenic
TGGGAGGGTTTGAGTTTACT+TGG 0.361172 4_1:+44446623 None:intergenic
ATAACAATTAATTATTCTAA+TGG 0.365926 4_1:-44449021 Msa0549340:CDS
AATTTCAAGGCAAAAGCTTT+GGG 0.365926 4_1:-44449536 Msa0549340:CDS
CAAAGACATGTAAACAGCTT+TGG 0.367048 4_1:-44450433 Msa0549340:CDS
GGAGCTGATGCTGGCGGGTA+AGG 0.367212 4_1:+44447060 None:intergenic
GTAGGCAATGTGTTGTGGTT+AGG 0.368981 4_1:-44443075 Msa0549340:three_prime_UTR
CCTGTTTCCATAATTGAGAT+TGG 0.373414 4_1:+44447163 None:intergenic
CTACAAGCTATAAAATTGTA+AGG 0.376634 4_1:-44442930 Msa0549340:three_prime_UTR
GTCGATATGGATGCTCATTT+AGG 0.379208 4_1:+44448929 None:intergenic
TCAGCAAGCACGAGGATTAC+AGG 0.381172 4_1:-44448526 Msa0549340:CDS
GTTGCTTTCTTCTCCTGTAC+CGG 0.384572 4_1:-44448689 Msa0549340:CDS
TTCATCCATCTCAGCAGTTT+AGG 0.385340 4_1:-44447116 Msa0549340:CDS
AAACAACTCCTTGCTGTTGC+TGG 0.392476 4_1:+44446980 None:intergenic
TTCAGTTCAGCCTGCAGCTC+CGG 0.394225 4_1:-44447373 Msa0549340:CDS
CAGGATGTTGTTGGATGGGA+GGG 0.394689 4_1:+44446608 None:intergenic
CACACTGCTCAAACGTTCTC+TGG 0.395604 4_1:-44447033 Msa0549340:CDS
ACCGGACCTGAACGTCTATA+TGG 0.396280 4_1:-44447624 Msa0549340:CDS
GCACCAGAGGACGATCTTGC+AGG 0.397152 4_1:+44448655 None:intergenic
GTCCCGATCCCTTTCCCTAC+AGG 0.398087 4_1:+44448415 None:intergenic
CATGATTATGGGCAATTTCA+AGG 0.399213 4_1:-44449549 Msa0549340:CDS
GCTGAGCAATCCACAACTTC+AGG 0.404831 4_1:+44447861 None:intergenic
AAAGGCCGCACTGGTATGTT+TGG 0.408813 4_1:+44448820 None:intergenic
GGGCCAGAAACAACAGATTC+AGG 0.409831 4_1:+44448781 None:intergenic
CCAATCTCAATTATGGAAAC+AGG 0.412968 4_1:-44447163 Msa0549340:CDS
ATCCAACAACATCCTGCCTT+TGG 0.413305 4_1:-44446601 Msa0549340:CDS
CTTGACCGCTTAGAATCTCT+TGG 0.413595 4_1:+44448604 None:intergenic
TAGGCAATGTGTTGTGGTTA+GGG 0.415212 4_1:-44443074 Msa0549340:three_prime_UTR
GGAAAACTATTCGGAATCAT+AGG 0.421962 4_1:+44448874 None:intergenic
GGACCAACAATACCACCATT+TGG 0.422900 4_1:+44448841 None:intergenic
TGCTGCATATATTGATTTGA+CGG 0.422942 4_1:+44447534 None:intergenic
AATTCTTATTGTTGAACTCC+TGG 0.423221 4_1:+44446457 None:intergenic
GCTATTGATGGTGCTAAGTC+AGG 0.423793 4_1:-44447243 Msa0549340:CDS
GCTGCTTCTGGGTCTCAAGC+TGG 0.425452 4_1:-44447333 Msa0549340:CDS
CCTGCATAAGGATCATCATT+AGG 0.427328 4_1:+44448565 None:intergenic
CCTGATACTGATGACTGAAA+TGG 0.428781 4_1:+44446896 None:intergenic
CTTCTCCTGTACCGGGTGCT+AGG 0.429255 4_1:-44448681 Msa0549340:CDS
CTGATACTGATGACTGAAAT+GGG 0.431421 4_1:+44446897 None:intergenic
TTAGGTGCCACAGGAGGAAA+TGG 0.431524 4_1:+44447195 None:intergenic
AAAGACATGTAAACAGCTTT+GGG 0.432400 4_1:-44450432 Msa0549340:CDS
TTTAGGAATAAATCAGGTCT+TGG 0.437023 4_1:+44448946 None:intergenic
AGCAGGCGACTGCGCATTTG+TGG 0.438260 4_1:+44447263 None:intergenic
AGGATCAAGGGCATGATTAT+GGG 0.438392 4_1:-44449560 Msa0549340:CDS
GCGCAGTCGCCTGCTATTGA+TGG 0.439362 4_1:-44447255 Msa0549340:CDS
TTCTGATTTCTGTAGGATCA+AGG 0.441799 4_1:-44449573 Msa0549340:intron
ACGACACCATATAGACGTTC+AGG 0.443101 4_1:+44447618 None:intergenic
TCCATATCGACCTGCACAAA+TGG 0.445163 4_1:-44448917 Msa0549340:CDS
CACAACACAAGGGTCCAAAC+TGG 0.445810 4_1:-44448738 Msa0549340:CDS
GGTGGGTATACTTGTTTAGC+AGG 0.449460 4_1:+44447411 None:intergenic
AAAACAGAGACATCACTTCC+TGG 0.449512 4_1:+44446841 None:intergenic
CGTGCAAAAGAGGGTCTTCA+AGG 0.452298 4_1:-44449066 Msa0549340:CDS
CCTGCACAAATGGATTCATT+TGG 0.452531 4_1:-44448907 Msa0549340:CDS
TTGGGTTGCTGGAAAGGCTG+GGG 0.453886 4_1:+44446721 None:intergenic
TCCCTGTAGGGAAAGGGATC+GGG 0.457883 4_1:-44448417 Msa0549340:CDS
AATTGTCCAGGAAAACTATT+CGG 0.458412 4_1:+44448865 None:intergenic
TATGCAGGGAGGGGTATCCT+TGG 0.458760 4_1:-44448550 Msa0549340:CDS
GGTAGTCTTTGCCGTGTACC+TGG 0.459292 4_1:+44448995 None:intergenic
ATTGGGTTGCTGGAAAGGCT+GGG 0.459495 4_1:+44446720 None:intergenic
TAGAATCCTCGTGCAACATT+CGG 0.459528 4_1:+44447439 None:intergenic
ACAGATTCAGGACCACCATT+AGG 0.461128 4_1:+44448793 None:intergenic
TGCTCATTTAGGAATAAATC+AGG 0.461490 4_1:+44448940 None:intergenic
TCTAAGCGGTCAAGGATAGA+TGG 0.465332 4_1:-44448595 Msa0549340:CDS
CCTAATGATGATCCTTATGC+AGG 0.466313 4_1:-44448565 Msa0549340:CDS
GGAAGCCTAGCACCCGGTAC+AGG 0.467553 4_1:+44448676 None:intergenic
CAAGATCGTCCTCTGGTGCA+TGG 0.467928 4_1:-44448651 Msa0549340:CDS
TTGCCAAATGGTGGTATTGT+TGG 0.468800 4_1:-44448844 Msa0549340:CDS
CTCCAAAGGCAGGATGTTGT+TGG 0.472577 4_1:+44446599 None:intergenic
TATTAGGTTGCTGGAAAGGA+TGG 0.472991 4_1:+44446779 None:intergenic
ACCATATAGACGTTCAGGTC+CGG 0.474787 4_1:+44447623 None:intergenic
TTGCTCAGCTAGGACGGGAT+TGG 0.474876 4_1:-44447847 Msa0549340:CDS
AGAGCATAGTCCGGAGCTGC+AGG 0.474877 4_1:+44447363 None:intergenic
CCACCATTTGGCAATTGTCC+AGG 0.476649 4_1:+44448853 None:intergenic
CTGTATTTGGAGTAGAAGAT+TGG 0.476680 4_1:+44446507 None:intergenic
ATATATTGATTTGACGGTAC+AGG 0.477091 4_1:+44447540 None:intergenic
TTGACTGTTAAATCCAAAGT+AGG 0.479610 4_1:-44450630 Msa0549340:CDS
GCTGCAGGCTGAACTGAAGA+AGG 0.481469 4_1:+44447378 None:intergenic
GAATTATTGGGTTGCTGGAA+AGG 0.483256 4_1:+44446715 None:intergenic
AGGATACCCCTCCCTGCATA+AGG 0.483990 4_1:+44448553 None:intergenic
TTATTATTAGGTTGCTGGAA+AGG 0.484653 4_1:+44446775 None:intergenic
ACTGTTAACTTGACTAGATA+AGG 0.485918 4_1:+44446687 None:intergenic
AACCCTTGTGCAGGAGGAGA+TGG 0.486175 4_1:+44448709 None:intergenic
CAACATCCTGCCTTTGGAGT+TGG 0.486698 4_1:-44446595 Msa0549340:CDS
CCTCCTGTGGCACCTAATGA+TGG 0.487831 4_1:-44447189 Msa0549340:CDS
TTGCTTTCTTCTCCTGTACC+GGG 0.488175 4_1:-44448688 Msa0549340:CDS
CCTGCCTTTGGAGTTGGTCA+AGG 0.489677 4_1:-44446589 Msa0549340:CDS
GAAGAAAGCAACCCTTGTGC+AGG 0.494496 4_1:+44448700 None:intergenic
ACGCATCTAGCACGACAAAC+AGG 0.495036 4_1:+44448439 None:intergenic
CAGCAAACACAAGGAGGACA+TGG 0.495449 4_1:-44446481 Msa0549340:CDS
TTGCTCATCGATCTGAACAT+TGG 0.497659 4_1:+44449194 None:intergenic
AGTCTTCCTTTGTTACAGCT+GGG 0.500459 4_1:+44450396 None:intergenic
ATTAGATTGCTGGAAATGCT+GGG 0.500474 4_1:+44446750 None:intergenic
GCAGGCGACTGCGCATTTGT+GGG 0.500753 4_1:+44447264 None:intergenic
ATGGGCACACCACTCGGTAC+TGG 0.503902 4_1:+44447582 None:intergenic
CGTGCTAGATGCGTCCCTGT+AGG 0.504132 4_1:-44448430 Msa0549340:CDS
CATTTGAGAGTCAAAATAAA+CGG 0.505315 4_1:+44443103 None:intergenic
TGAAGCCCGGCGTGCAAAAG+AGG 0.507690 4_1:-44449076 Msa0549340:CDS
AGCTGTAACAAAGGAAGACT+TGG 0.508151 4_1:-44450393 Msa0549340:CDS
TTTCCATCATTAGGTGCCAC+AGG 0.509189 4_1:+44447186 None:intergenic
GCAATGTTGACTGGTATCTC+TGG 0.511378 4_1:+44446539 None:intergenic
GCAGGATGTTGTTGGATGGG+AGG 0.513014 4_1:+44446607 None:intergenic
TTATTGCAGTCCTGAAGTTG+TGG 0.515252 4_1:-44447871 Msa0549340:intron
GCAGCAGATGCCTCCTTCAC+AGG 0.516244 4_1:-44447517 Msa0549340:CDS
ACAAGGGTCCAAACTGGAAA+CGG 0.516634 4_1:-44448732 Msa0549340:CDS
AGTCCGCGCCATATATGATC+AGG 0.517580 4_1:+44448481 None:intergenic
TGGGTTGCTGGAAAGGCTGG+GGG 0.517726 4_1:+44446722 None:intergenic
GTACTATTCTCGTTAAACTC+AGG 0.521226 4_1:+44448760 None:intergenic
TTATGTGAGGATCATTGAAA+AGG 0.521470 4_1:+44449040 None:intergenic
CAGGCAATGAAAATTATGAA+TGG 0.521937 4_1:-44450272 Msa0549340:CDS
CGGCCATCTCCTCCTGCACA+AGG 0.521991 4_1:-44448712 Msa0549340:CDS
TTAGAAGTGTTGATGAAGCC+CGG 0.522556 4_1:-44449089 Msa0549340:CDS
GAAAGCAACCCTTGTGCAGG+AGG 0.523157 4_1:+44448703 None:intergenic
TTTCCTGGACAATTGCCAAA+TGG 0.523635 4_1:-44448856 Msa0549340:CDS
TCCCGATCCCTTTCCCTACA+GGG 0.525751 4_1:+44448416 None:intergenic
GGCTAGGAGCTGATGCTGGC+GGG 0.527341 4_1:+44447055 None:intergenic
GTCCCTGTAGGGAAAGGGAT+CGG 0.529505 4_1:-44448418 Msa0549340:CDS
GTGTGGCTAGGAGCTGATGC+TGG 0.530010 4_1:+44447051 None:intergenic
ATATTCCTAAACTGCTGAGA+TGG 0.530149 4_1:+44447111 None:intergenic
CCGTAAATTTGGTAAAGTTG+AGG 0.532036 4_1:-44450360 Msa0549340:CDS
GTGCTAGATGCGTCCCTGTA+GGG 0.533606 4_1:-44448429 Msa0549340:CDS
AGATGCGTCCCTGTAGGGAA+AGG 0.534006 4_1:-44448424 Msa0549340:CDS
ACTGAATTCCTACGCTACCT+TGG 0.534308 4_1:-44447738 Msa0549340:CDS
CGAGAATAGTACACAACACA+AGG 0.535905 4_1:-44448749 Msa0549340:CDS
TCTGATTTCTGTAGGATCAA+GGG 0.536341 4_1:-44449572 Msa0549340:intron
GATGGTGCTAAGTCAGGTGC+AGG 0.536831 4_1:-44447237 Msa0549340:CDS
TGGCGCGGACTTATTGCAAA+AGG 0.538802 4_1:-44448469 Msa0549340:CDS
CCAAATGAATCCATTTGTGC+AGG 0.539024 4_1:+44448907 None:intergenic
GTGGATTGCTCAGCTAGGAC+GGG 0.539227 4_1:-44447852 Msa0549340:CDS
TGTGGATTGCTCAGCTAGGA+CGG 0.539501 4_1:-44447853 Msa0549340:CDS
AAAGGCAGGATGTTGTTGGA+TGG 0.541768 4_1:+44446603 None:intergenic
GGACCACCATTAGGACCAAA+AGG 0.541806 4_1:+44448802 None:intergenic
TTACTCCCAGGATAAAAGCC+AGG 0.542415 4_1:+44448973 None:intergenic
CTTATCAGCCTCCAATTCTG+GGG 0.544273 4_1:+44446564 None:intergenic
ATACAGCAGCAGCAAACACA+AGG 0.544795 4_1:-44446490 Msa0549340:CDS
AAACTGCTGAGATGGATGAA+TGG 0.547559 4_1:+44447119 None:intergenic
TGACTTTCAGAACATCTGTC+AGG 0.549338 4_1:+44447646 None:intergenic
TTTGTGACACCTACTCAAAG+TGG 0.549607 4_1:-44446937 Msa0549340:CDS
CTTCCTGCAAGATCGTCCTC+TGG 0.550724 4_1:-44448658 Msa0549340:CDS
TTATCAGCCTCCAATTCTGG+GGG 0.550904 4_1:+44446565 None:intergenic
AAGATCGTCCTCTGGTGCAT+GGG 0.551796 4_1:-44448650 Msa0549340:CDS
CATTAGCCCAGCTGTAACAA+AGG 0.552756 4_1:-44450402 Msa0549340:CDS
AGCAAACACAAGGAGGACAT+GGG 0.554228 4_1:-44446480 Msa0549340:CDS
AAGGCAGGATGTTGTTGGAT+GGG 0.554386 4_1:+44446604 None:intergenic
TACTATTCTCGTTAAACTCA+GGG 0.554731 4_1:+44448761 None:intergenic
GCTAAAGTTGCAATAAGCTC+AGG 0.556924 4_1:+44447297 None:intergenic
GATGCGTCCCTGTAGGGAAA+GGG 0.557384 4_1:-44448423 Msa0549340:CDS
TGGTGCATGGGCACACCACT+CGG 0.558310 4_1:+44447576 None:intergenic
TGTAAACAGCTTTGGGTAGG+TGG 0.560436 4_1:-44450425 Msa0549340:CDS
TGATGATCCTTATGCAGGGA+GGG 0.561419 4_1:-44448560 Msa0549340:CDS
AAATGTGATGATTGGTGCAT+GGG 0.561477 4_1:+44447564 None:intergenic
TAGGTTGCTGGAAAGGATGG+TGG 0.562364 4_1:+44446782 None:intergenic
GCAGTGTTTAGAGCATAGTC+CGG 0.563661 4_1:+44447354 None:intergenic
GATGATCCTTATGCAGGGAG+GGG 0.566193 4_1:-44448559 Msa0549340:CDS
TGGCTAGGAGCTGATGCTGG+CGG 0.567995 4_1:+44447054 None:intergenic
CCTTGACCAACTCCAAAGGC+AGG 0.570169 4_1:+44446589 None:intergenic
TTAGGACCAAAAGGCCGCAC+TGG 0.570367 4_1:+44448811 None:intergenic
GGGGCCTTGACCAACTCCAA+AGG 0.571607 4_1:+44446585 None:intergenic
GAAAGCCTTTCTGAGTATTG+GGG 0.571826 4_1:+44446863 None:intergenic
TGAATGGAAAACGTATCGGT+GGG 0.572266 4_1:-44450256 Msa0549340:CDS
CCTGGACAATTGCCAAATGG+TGG 0.572421 4_1:-44448853 Msa0549340:CDS
GACTTAGCACCATCAATAGC+AGG 0.572620 4_1:+44447246 None:intergenic
GAATAATTAATTGTTATGTG+AGG 0.572695 4_1:+44449027 None:intergenic
AGAATTCACAACCTCTAATG+AGG 0.573031 4_1:-44449266 Msa0549340:CDS
ATGAATGGAAAACGTATCGG+TGG 0.574430 4_1:-44450257 Msa0549340:CDS
GAAGCCCGGCGTGCAAAAGA+GGG 0.575985 4_1:-44449075 Msa0549340:CDS
TAATTATTCTAATGGTGACC+AGG 0.576148 4_1:-44449013 Msa0549340:CDS
GAAGAAGGCCCACCTGTAGG+TGG 0.576313 4_1:+44447393 None:intergenic
GTACAGGCAAATGTGATGAT+TGG 0.577435 4_1:+44447556 None:intergenic
CAGCAAACTGCAATGTTGAC+TGG 0.579945 4_1:+44446530 None:intergenic
CGCGGACTTATTGCAAAAGG+AGG 0.580144 4_1:-44448466 Msa0549340:CDS
ATTATGAATGGAAAACGTAT+CGG 0.581147 4_1:-44450260 Msa0549340:CDS
AACGTTTGAGCAGTGTGGCT+AGG 0.581449 4_1:+44447039 None:intergenic
ACACAAGGAGGACATGGGCC+AGG 0.585207 4_1:-44446475 Msa0549340:CDS
ACAACCTCTAATGAGGAGGA+AGG 0.585543 4_1:-44449259 Msa0549340:CDS
CAAGAGATTCTAAGCGGTCA+AGG 0.586806 4_1:-44448603 Msa0549340:CDS
AAACAAGTATACCCACCTAC+AGG 0.589718 4_1:-44447405 Msa0549340:CDS
GACACCTACTCAAAGTGGAC+AGG 0.591054 4_1:-44446932 Msa0549340:CDS
TCTGCGGTATATTGCATGAC+AGG 0.592140 4_1:+44446646 None:intergenic
GCTACCTGTCCACTTTGAGT+AGG 0.593575 4_1:+44446928 None:intergenic
AAATGGAGGCTTCACAGTTG+AGG 0.594398 4_1:+44447212 None:intergenic
GAAGCCTCCATTTCCTCCTG+TGG 0.594524 4_1:-44447202 Msa0549340:CDS
TGACTCTCAAATGGACGCGT+AGG 0.594707 4_1:-44443093 Msa0549340:three_prime_UTR
TGATATGAATCCTGCAAAGG+AGG 0.599679 4_1:-44447487 Msa0549340:CDS
GAGCTGTCAAAATTAAGAAG+TGG 0.602051 4_1:-44450608 Msa0549340:CDS
TGTCAAAATTAAGAAGTGGT+TGG 0.603074 4_1:-44450604 Msa0549340:intron
ACAGATGTTCTGAAAGTCAC+CGG 0.604625 4_1:-44447642 Msa0549340:CDS
GTGCAAAAGAGGGTCTTCAA+GGG 0.607314 4_1:-44449065 Msa0549340:CDS
GGTCTTGGCCCATTACTCCC+AGG 0.609272 4_1:+44448961 None:intergenic
GTTTGAGTTTACTTGGTCTG+CGG 0.610068 4_1:+44446630 None:intergenic
CTCATCGATCTGAACATTGG+GGG 0.610203 4_1:+44449197 None:intergenic
CGCGCCATATATGATCAGGT+TGG 0.610547 4_1:+44448485 None:intergenic
AAGTTGTGGATTGCTCAGCT+AGG 0.610739 4_1:-44447857 Msa0549340:CDS
AAAGCCTTTCTGAGTATTGG+GGG 0.611169 4_1:+44446864 None:intergenic
TCATATTCAGCCTGTGAAGG+AGG 0.612052 4_1:+44447507 None:intergenic
GCTCATCGATCTGAACATTG+GGG 0.613416 4_1:+44449196 None:intergenic
CAAATGTGATGATTGGTGCA+TGG 0.614034 4_1:+44447563 None:intergenic
CAGCAGCAGCAAACACAAGG+AGG 0.615115 4_1:-44446487 Msa0549340:CDS
TCCTCGTGCTTGCTGAACCA+AGG 0.616126 4_1:+44448533 None:intergenic
ATATCATATTCAGCCTGTGA+AGG 0.617175 4_1:+44447504 None:intergenic
CAAGTATACCCACCTACAGG+TGG 0.619282 4_1:-44447402 Msa0549340:CDS
TAGATTGCTGGAAATGCTGG+GGG 0.620954 4_1:+44446752 None:intergenic
TACTCCCAGGATAAAAGCCA+GGG 0.621948 4_1:+44448974 None:intergenic
TCCTTGGTTCAGCAAGCACG+AGG 0.623055 4_1:-44448534 Msa0549340:CDS
CTAATGATGATCCTTATGCA+GGG 0.624921 4_1:-44448564 Msa0549340:CDS
CAACCTCTAATGAGGAGGAA+GGG 0.625198 4_1:-44449258 Msa0549340:CDS
TTAGATTGCTGGAAATGCTG+GGG 0.625837 4_1:+44446751 None:intergenic
GATACTGATGACTGAAATGG+GGG 0.632647 4_1:+44446899 None:intergenic
ACTGAAGAAGGCCCACCTGT+AGG 0.634196 4_1:+44447390 None:intergenic
ACATCTGTCAGGAAATCAGA+AGG 0.635324 4_1:+44447657 None:intergenic
CAGAGAACGTTTGAGCAGTG+TGG 0.636019 4_1:+44447034 None:intergenic
ACATGTAAACAGCTTTGGGT+AGG 0.636023 4_1:-44450428 Msa0549340:CDS
GAAACAGGATCATCAAATTG+CGG 0.638436 4_1:-44447148 Msa0549340:CDS
GACGCGTAGGCAATGTGTTG+TGG 0.640431 4_1:-44443080 Msa0549340:three_prime_UTR
CTTGCAGGAAGCCTAGCACC+CGG 0.641932 4_1:+44448670 None:intergenic
TCTAATGGTGACCAGGTACA+CGG 0.642036 4_1:-44449006 Msa0549340:CDS
ATTCACAACCTCTAATGAGG+AGG 0.642098 4_1:-44449263 Msa0549340:CDS
CGCACGAACGCTAGAGACAG+AGG 0.644211 4_1:-44443048 Msa0549340:three_prime_UTR
GCTGTTAGCCAGCAACAGCA+AGG 0.645862 4_1:-44446988 Msa0549340:CDS
ATGTCGGTACAAGTTTGAGA+TGG 0.646588 4_1:+44442840 None:intergenic
AAGAAGGCCCACCTGTAGGT+GGG 0.647391 4_1:+44447394 None:intergenic
CTAATGAGGAGGAAGGGTGA+CGG 0.647467 4_1:-44449252 Msa0549340:CDS
ATATGATATGAATCCTGCAA+AGG 0.648486 4_1:-44447490 Msa0549340:CDS
TGCATGACAGGCTGATGCTG+AGG 0.648573 4_1:+44446658 None:intergenic
CAACCTGATCATATATGGCG+CGG 0.654240 4_1:-44448484 Msa0549340:CDS
GGTGCCACAGGAGGAAATGG+AGG 0.654767 4_1:+44447198 None:intergenic
TCATCGATCTGAACATTGGG+GGG 0.655238 4_1:+44449198 None:intergenic
AAGTACATCCCATGCACCAG+AGG 0.657873 4_1:+44448642 None:intergenic
AAGCCTTTCTGAGTATTGGG+GGG 0.661982 4_1:+44446865 None:intergenic
CCATCATTAGGTGCCACAGG+AGG 0.662192 4_1:+44447189 None:intergenic
TTGATCGGAGGAAGTCAACA+CGG 0.662529 4_1:+44450225 None:intergenic
GGCCATCTCCTCCTGCACAA+GGG 0.664192 4_1:-44448711 Msa0549340:CDS
TGATACTGATGACTGAAATG+GGG 0.666240 4_1:+44446898 None:intergenic
ATGATGATCCTTATGCAGGG+AGG 0.667404 4_1:-44448561 Msa0549340:CDS
GAATGGAAAACGTATCGGTG+GGG 0.669466 4_1:-44450255 Msa0549340:CDS
TATCAGCCTCCAATTCTGGG+GGG 0.672718 4_1:+44446566 None:intergenic
AAGTATACCCACCTACAGGT+GGG 0.684947 4_1:-44447401 Msa0549340:CDS
GTACACGGCAAAGACTACCC+TGG 0.688426 4_1:-44448991 Msa0549340:CDS
GCAAGCACGAGGATTACAGG+TGG 0.698180 4_1:-44448523 Msa0549340:CDS
TCTGTCAGGAAATCAGAAGG+AGG 0.700935 4_1:+44447660 None:intergenic
GAGAATAGTACACAACACAA+GGG 0.713225 4_1:-44448748 Msa0549340:CDS
ATATTCCAAGAGATTCTAAG+CGG 0.723169 4_1:-44448609 Msa0549340:CDS
AAGTTTGCACCAGTACCGAG+TGG 0.749260 4_1:-44447591 Msa0549340:CDS
TTACAACCGAATGTTGCACG+AGG 0.756011 4_1:-44447445 Msa0549340:CDS
TTGGTCCAAACATACCAGTG+CGG 0.770413 4_1:-44448825 Msa0549340:CDS
ATACTGATGACTGAAATGGG+GGG 0.791743 4_1:+44446900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAATTAATTATTCTAA+TGG - chr4_1:44444451-44444470 Msa0549340:intron 10.0%
!!! TCAATTTAATTTTGTAAATA+TGG - chr4_1:44445116-44445135 Msa0549340:intron 10.0%
!!! TCTTTAGAAAAAATAAAAAA+AGG + chr4_1:44445385-44445404 None:intergenic 10.0%
!!! GGAATTTTTTTTAATTTTAA+TGG - chr4_1:44448277-44448296 Msa0549340:intron 10.0%
!!! TTTTTATTTACATTGTTTTA+TGG - chr4_1:44450266-44450285 Msa0549340:CDS 10.0%
!!! CATTAAATTATTTTCATATT+AGG - chr4_1:44450479-44450498 Msa0549340:intron 10.0%
!! AGGAAGTAATTAATAATATA+CGG + chr4_1:44443335-44443354 None:intergenic 15.0%
!! TCTAAATAAAAGAAATATGT+AGG - chr4_1:44445261-44445280 Msa0549340:intron 15.0%
!!! TAGGTTTTATGAATTTTATT+CGG - chr4_1:44445280-44445299 Msa0549340:intron 15.0%
!!! GAAACTATTCATATTATTTT+TGG - chr4_1:44445403-44445422 Msa0549340:intron 15.0%
!!! CATATTATTTTTGGTAAATA+AGG - chr4_1:44445412-44445431 Msa0549340:intron 15.0%
!! TACTATCGAAATATTTATTT+GGG + chr4_1:44447395-44447414 None:intergenic 15.0%
!! ATATTTATATTAATACCAGA+GGG + chr4_1:44447485-44447504 None:intergenic 15.0%
!! TATATTTATATTAATACCAG+AGG + chr4_1:44447486-44447505 None:intergenic 15.0%
!! AATTAAAAAAAATTCCAGAT+AGG + chr4_1:44448273-44448292 None:intergenic 15.0%
!! AACATAAGTTTAATATTAGA+AGG + chr4_1:44448371-44448390 None:intergenic 15.0%
!!! AATAATGCTTTAAAAATGTT+CGG - chr4_1:44448454-44448473 Msa0549340:CDS 15.0%
!!! ATTTTTCTCAATTATTAGAA+CGG - chr4_1:44449533-44449552 Msa0549340:CDS 15.0%
!!! ATTTTTTAACTATTATTGAC+AGG - chr4_1:44450316-44450335 Msa0549340:CDS 15.0%
!! ATATTATTAATTACTTCCTC+CGG - chr4_1:44443336-44443355 Msa0549340:intron 20.0%
!!! TATAATTTCAATTTGGTAAC+TGG - chr4_1:44443524-44443543 Msa0549340:intron 20.0%
!!! ATAATTTCAATTTGGTAACT+GGG - chr4_1:44443525-44443544 Msa0549340:intron 20.0%
!!! AAGCTTTTCACATTTTAAAA+TGG - chr4_1:44443630-44443649 Msa0549340:intron 20.0%
!! ACAAATGAAAAATTTCTTGA+AGG + chr4_1:44444358-44444377 None:intergenic 20.0%
!! GAATAATTAATTGTTATGTG+AGG + chr4_1:44444448-44444467 None:intergenic 20.0%
!!! TAATTTTGTAAATATGGAAG+AGG - chr4_1:44445122-44445141 Msa0549340:intron 20.0%
!! TAAAGTTGTATTGTCAAATT+TGG + chr4_1:44445783-44445802 None:intergenic 20.0%
!! ATTCAAAAGAATCAATTATG+GGG + chr4_1:44447058-44447077 None:intergenic 20.0%
!! CATTCAAAAGAATCAATTAT+GGG + chr4_1:44447059-44447078 None:intergenic 20.0%
!! TCATTCAAAAGAATCAATTA+TGG + chr4_1:44447060-44447079 None:intergenic 20.0%
!! ACTATCGAAATATTTATTTG+GGG + chr4_1:44447394-44447413 None:intergenic 20.0%
!! GTACTATCGAAATATTTATT+TGG + chr4_1:44447396-44447415 None:intergenic 20.0%
!!! TATTTTGAAATTTGAAACTC+GGG + chr4_1:44447448-44447467 None:intergenic 20.0%
!!! GTATTTTGAAATTTGAAACT+CGG + chr4_1:44447449-44447468 None:intergenic 20.0%
!!! TCCCATTATTTTTTATCAAT+AGG - chr4_1:44447751-44447770 Msa0549340:CDS 20.0%
!! GCCTATTGATAAAAAATAAT+GGG + chr4_1:44447755-44447774 None:intergenic 20.0%
!! AGCCTATTGATAAAAAATAA+TGG + chr4_1:44447756-44447775 None:intergenic 20.0%
!! AAACTCATTAGGATTATATT+CGG + chr4_1:44448168-44448187 None:intergenic 20.0%
!! AAAAATGTTCGGAATTTAAT+CGG - chr4_1:44448465-44448484 Msa0549340:CDS 20.0%
!! TTATCAAGTCTATTTAAACT+GGG + chr4_1:44448737-44448756 None:intergenic 20.0%
!! TTTATCAAGTCTATTTAAAC+TGG + chr4_1:44448738-44448757 None:intergenic 20.0%
!!! GATATTTTAACAAAGATAGT+TGG + chr4_1:44449201-44449220 None:intergenic 20.0%
!!! TTTTTCTCAATTATTAGAAC+GGG - chr4_1:44449534-44449553 Msa0549340:CDS 20.0%
!!! GATAGAAATTCATCTTTTTA+AGG + chr4_1:44449615-44449634 None:intergenic 20.0%
!!! CTTTTTTTGGTTAAGTAATA+TGG + chr4_1:44449640-44449659 None:intergenic 20.0%
!! AACCAAAAAAAGAGAAAAAA+TGG - chr4_1:44449648-44449667 Msa0549340:intron 20.0%
!! ACCAAAAAAAGAGAAAAAAT+GGG - chr4_1:44449649-44449668 Msa0549340:intron 20.0%
!! CAAATTGTATGTTAAATACA+TGG - chr4_1:44449932-44449951 Msa0549340:intron 20.0%
!! TTTTGCTTCAAACTATTGAA+AGG + chr4_1:44442896-44442915 None:intergenic 25.0%
! AACAATCTGCTAATACTAAA+AGG + chr4_1:44442933-44442952 None:intergenic 25.0%
! ATTATGAATGGAAAACGTAT+CGG - chr4_1:44443212-44443231 Msa0549340:intron 25.0%
!! CTCTTTTTGCATAATTTGAT+CGG + chr4_1:44443265-44443284 None:intergenic 25.0%
!! CAGTTTTCTCTCTTATATAT+GGG + chr4_1:44443363-44443382 None:intergenic 25.0%
! ACCAACTTTCTCTTATATAT+AGG - chr4_1:44443443-44443462 Msa0549340:intron 25.0%
! TCCTATATATAAGAGAAAGT+TGG + chr4_1:44443447-44443466 None:intergenic 25.0%
! CAGGATCTATAATTTCAATT+TGG - chr4_1:44443517-44443536 Msa0549340:intron 25.0%
!! TAATTTCAATTTGGTAACTG+GGG - chr4_1:44443526-44443545 Msa0549340:intron 25.0%
!! TCTTTGAAAATGATACATAC+TGG - chr4_1:44443555-44443574 Msa0549340:intron 25.0%
!! ATGAAAAGAAACAACTTGTT+CGG + chr4_1:44443830-44443849 None:intergenic 25.0%
! AAATCAGAAAACGAAATGTT+AGG + chr4_1:44443888-44443907 None:intergenic 25.0%
! ATTCTTATTCTGGACAAAAA+AGG - chr4_1:44443966-44443985 Msa0549340:intron 25.0%
! TTGTTCTTCATTGTATCATT+AGG - chr4_1:44445335-44445354 Msa0549340:intron 25.0%
!! TTTTCTCCAATATAAGTGAT+TGG - chr4_1:44445456-44445475 Msa0549340:intron 25.0%
!!! TTTTCAAGGAAAAAGCAAAT+GGG + chr4_1:44445503-44445522 None:intergenic 25.0%
! TGACAATACAACTTTATTCT+TGG - chr4_1:44445787-44445806 Msa0549340:intron 25.0%
! GATAAGGCAATAGAATTATT+GGG + chr4_1:44446772-44446791 None:intergenic 25.0%
! AGATAAGGCAATAGAATTAT+TGG + chr4_1:44446773-44446792 None:intergenic 25.0%
! TTGGGAGAAGAATATAAATA+TGG + chr4_1:44447124-44447143 None:intergenic 25.0%
! TGACATGTAAACATATACTT+GGG - chr4_1:44447220-44447239 Msa0549340:CDS 25.0%
! GCAATGTAAACAATTAGATT+TGG - chr4_1:44447287-44447306 Msa0549340:CDS 25.0%
!! TGTAAACAATTAGATTTGGT+AGG - chr4_1:44447291-44447310 Msa0549340:CDS 25.0%
!!! TCTTTAGAAGGTAGTTTTTA+GGG - chr4_1:44447799-44447818 Msa0549340:CDS 25.0%
! TGGAAACATAGAAAAATTAG+CGG + chr4_1:44448047-44448066 None:intergenic 25.0%
! TATCGGAGTAAAAATAACTA+TGG + chr4_1:44448067-44448086 None:intergenic 25.0%
!! TTTTACTCCGATAATTACTT+AGG - chr4_1:44448074-44448093 Msa0549340:intron 25.0%
! TTTACTCCGATAATTACTTA+GGG - chr4_1:44448075-44448094 Msa0549340:intron 25.0%
! AAAAAATCTCTAAACCAAGT+TGG + chr4_1:44448192-44448211 None:intergenic 25.0%
! GTTCGTAGTTTAAAAATAAC+TGG + chr4_1:44448224-44448243 None:intergenic 25.0%
!!! GTTATTTTTAAACTACGAAC+AGG - chr4_1:44448224-44448243 Msa0549340:intron 25.0%
! GTTTAATATTAGAAGGTAAG+AGG + chr4_1:44448364-44448383 None:intergenic 25.0%
! ATTAACATGAGGTAATTGAA+AGG + chr4_1:44448867-44448886 None:intergenic 25.0%
!!! CGTTTTTTGTAACAGTAATA+TGG - chr4_1:44448926-44448945 Msa0549340:CDS 25.0%
!!! AACTTTAATTTGTAACGTTG+TGG - chr4_1:44449154-44449173 Msa0549340:CDS 25.0%
!!! TATTAAAAGCGTGTTTTGTT+TGG - chr4_1:44449251-44449270 Msa0549340:CDS 25.0%
! AGAACGAAATAGAAAATCTT+TGG + chr4_1:44449492-44449511 None:intergenic 25.0%
!!! CTTTTTAAGGTAAATAGTTG+AGG + chr4_1:44449602-44449621 None:intergenic 25.0%
!!! TTTTTGGTTAAGTAATATGG+CGG + chr4_1:44449637-44449656 None:intergenic 25.0%
!!! ACCCATTTTTTCTCTTTTTT+TGG + chr4_1:44449653-44449672 None:intergenic 25.0%
!! TAATCTTTTCATTACTAGTC+TGG - chr4_1:44449712-44449731 Msa0549340:intron 25.0%
! TTGTATGTTAAATACATGGT+TGG - chr4_1:44449936-44449955 Msa0549340:intron 25.0%
!! TAAATACATGGTTGGTATTA+TGG - chr4_1:44449944-44449963 Msa0549340:intron 25.0%
!! TTTTGCAAAAGTGAAAATGA+CGG - chr4_1:44449998-44450017 Msa0549340:intron 25.0%
! CATTTGAGAGTCAAAATAAA+CGG + chr4_1:44450372-44450391 None:intergenic 25.0%
! CTACAAGCTATAAAATTGTA+AGG - chr4_1:44450542-44450561 Msa0549340:intron 25.0%
!!! TTTTGACTCAATTGTAATGT+TGG - chr4_1:44450569-44450588 Msa0549340:intron 25.0%
TTGACTGTTAAATCCAAAGT+AGG - chr4_1:44442842-44442861 Msa0549340:three_prime_UTR 30.0%
TGTCAAAATTAAGAAGTGGT+TGG - chr4_1:44442868-44442887 Msa0549340:three_prime_UTR 30.0%
AAAGACATGTAAACAGCTTT+GGG - chr4_1:44443040-44443059 Msa0549340:three_prime_UTR 30.0%
CCTCAACTTTACCAAATTTA+CGG + chr4_1:44443115-44443134 None:intergenic 30.0%
CAATTTAGATGATGCTATTC+AGG - chr4_1:44443181-44443200 Msa0549340:intron 30.0%
CAGGCAATGAAAATTATGAA+TGG - chr4_1:44443200-44443219 Msa0549340:intron 30.0%
! TTTTTGCATAATTTGATCGG+AGG + chr4_1:44443262-44443281 None:intergenic 30.0%
! CCAGTTTTCTCTCTTATATA+TGG + chr4_1:44443364-44443383 None:intergenic 30.0%
CCATATATAAGAGAGAAAAC+TGG - chr4_1:44443361-44443380 Msa0549340:intron 30.0%
TCAACAAAAATTGATGTACC+TGG - chr4_1:44443385-44443404 Msa0549340:intron 30.0%
! GATGTACCTGGTTTAAAATT+TGG - chr4_1:44443397-44443416 Msa0549340:intron 30.0%
CTTTCTCTTATATATAGGAC+CGG - chr4_1:44443448-44443467 Msa0549340:intron 30.0%
AATGTGAAAAGCTTCACAAA+AGG + chr4_1:44443624-44443643 None:intergenic 30.0%
!!! TCACATTTTAAAATGGACCT+TGG - chr4_1:44443637-44443656 Msa0549340:intron 30.0%
ATTGTAAGGTTTGTCTGATT+TGG - chr4_1:44443668-44443687 Msa0549340:intron 30.0%
AAACATCGACGAAAAGTAAT+TGG + chr4_1:44443730-44443749 None:intergenic 30.0%
! CGTCGATGTTTTATAGAAAT+TGG - chr4_1:44443739-44443758 Msa0549340:intron 30.0%
! CGATGTTTTATAGAAATTGG+TGG - chr4_1:44443742-44443761 Msa0549340:intron 30.0%
!!! TCATGTTATTTTTGCTCTTC+TGG - chr4_1:44443846-44443865 Msa0549340:intron 30.0%
! TTTCGTTTTCTGATTTCTGT+AGG - chr4_1:44443892-44443911 Msa0549340:intron 30.0%
AATTTCAAGGCAAAAGCTTT+GGG - chr4_1:44443936-44443955 Msa0549340:intron 30.0%
ACATCAGCCAATATACAAAT+AGG + chr4_1:44444121-44444140 None:intergenic 30.0%
! GTCAACCCAATAATATTTTG+TGG - chr4_1:44444242-44444261 Msa0549340:intron 30.0%
CCGATCCACAAAATATTATT+GGG + chr4_1:44444250-44444269 None:intergenic 30.0%
! CCCAATAATATTTTGTGGAT+CGG - chr4_1:44444247-44444266 Msa0549340:intron 30.0%
ACCGATCCACAAAATATTAT+TGG + chr4_1:44444251-44444270 None:intergenic 30.0%
AATTTCACCAAAAAGGATCA+TGG + chr4_1:44444317-44444336 None:intergenic 30.0%
TTCTCTCAATTTCACCAAAA+AGG + chr4_1:44444324-44444343 None:intergenic 30.0%
TTATGTGAGGATCATTGAAA+AGG + chr4_1:44444435-44444454 None:intergenic 30.0%
TAATTATTCTAATGGTGACC+AGG - chr4_1:44444459-44444478 Msa0549340:intron 30.0%
TTTAGGAATAAATCAGGTCT+TGG + chr4_1:44444529-44444548 None:intergenic 30.0%
TGCTCATTTAGGAATAAATC+AGG + chr4_1:44444535-44444554 None:intergenic 30.0%
AATTGTCCAGGAAAACTATT+CGG + chr4_1:44444610-44444629 None:intergenic 30.0%
TACTATTCTCGTTAAACTCA+GGG + chr4_1:44444714-44444733 None:intergenic 30.0%
ATATTCCAAGAGATTCTAAG+CGG - chr4_1:44444863-44444882 Msa0549340:intron 30.0%
! AGTAACTTTTCCAGCAAATA+GGG + chr4_1:44445204-44445223 None:intergenic 30.0%
! AAGTAACTTTTCCAGCAAAT+AGG + chr4_1:44445205-44445224 None:intergenic 30.0%
GAAAAGTTACTTGTAGCAAA+TGG - chr4_1:44445213-44445232 Msa0549340:intron 30.0%
!! GTTTTCAAGGAAAAAGCAAA+TGG + chr4_1:44445504-44445523 None:intergenic 30.0%
! CCAAAATCATTTTCACTATC+AGG + chr4_1:44445707-44445726 None:intergenic 30.0%
!! CCTGATAGTGAAAATGATTT+TGG - chr4_1:44445704-44445723 Msa0549340:intron 30.0%
!! ATATATTGATTTGACGGTAC+AGG + chr4_1:44445935-44445954 None:intergenic 30.0%
!! TGCTGCATATATTGATTTGA+CGG + chr4_1:44445941-44445960 None:intergenic 30.0%
ATATGATATGAATCCTGCAA+AGG - chr4_1:44445982-44446001 Msa0549340:intron 30.0%
ATGGAAACCAATCTCAATTA+TGG - chr4_1:44446302-44446321 Msa0549340:intron 30.0%
! CTCTGTTTTATACAATTCTC+AGG - chr4_1:44446645-44446664 Msa0549340:CDS 30.0%
! AAAGGATGGTGGTTATTATT+AGG + chr4_1:44446682-44446701 None:intergenic 30.0%
! TTATTATTAGGTTGCTGGAA+AGG + chr4_1:44446670-44446689 None:intergenic 30.0%
! ACTGTTAACTTGACTAGATA+AGG + chr4_1:44446788-44446807 None:intergenic 30.0%
AATTCTTATTGTTGAACTCC+TGG + chr4_1:44447018-44447037 None:intergenic 30.0%
! AACCACAAAGTGAACTTTTT+GGG + chr4_1:44447142-44447161 None:intergenic 30.0%
! TAACCACAAAGTGAACTTTT+TGG + chr4_1:44447143-44447162 None:intergenic 30.0%
GTGACATGTAAACATATACT+TGG - chr4_1:44447219-44447238 Msa0549340:CDS 30.0%
!! ATTGCTTAATTTGTCTTTGC+AGG + chr4_1:44447272-44447291 None:intergenic 30.0%
! ATTTATTTGGGGAAAAGTAC+AGG + chr4_1:44447383-44447402 None:intergenic 30.0%
!! GTTGACAACAGTTTTAACAA+GGG + chr4_1:44447421-44447440 None:intergenic 30.0%
ACTAACTATTAAAATCCCTC+TGG - chr4_1:44447467-44447486 Msa0549340:CDS 30.0%
!! TAGTTGTCTTATAGTTCTGA+TGG - chr4_1:44447504-44447523 Msa0549340:CDS 30.0%
TGACAAATAAGTAGGTGTAT+GGG + chr4_1:44447543-44447562 None:intergenic 30.0%
! CTTTTTCTTTCCTCTTTAGA+AGG - chr4_1:44447787-44447806 Msa0549340:CDS 30.0%
! CTAAAAACTACCTTCTAAAG+AGG + chr4_1:44447800-44447819 None:intergenic 30.0%
!! CTCTTTAGAAGGTAGTTTTT+AGG - chr4_1:44447798-44447817 Msa0549340:CDS 30.0%
!!! TGAACTTATTTTACTGTGAG+GGG - chr4_1:44447842-44447861 Msa0549340:CDS 30.0%
GAAACATAGAAAAATTAGCG+GGG + chr4_1:44448045-44448064 None:intergenic 30.0%
GGAAACATAGAAAAATTAGC+GGG + chr4_1:44448046-44448065 None:intergenic 30.0%
TTACTCCGATAATTACTTAG+GGG - chr4_1:44448076-44448095 Msa0549340:intron 30.0%
TTCAACCCCTAAGTAATTAT+CGG + chr4_1:44448084-44448103 None:intergenic 30.0%
ATAATTACTTAGGGGTTGAA+AGG - chr4_1:44448084-44448103 Msa0549340:intron 30.0%
! AGAAATCTTTTAGTCCTATC+TGG - chr4_1:44448256-44448275 Msa0549340:intron 30.0%
ATGCAAACAAATGATATCCA+GGG + chr4_1:44448429-44448448 None:intergenic 30.0%
AATGCAAACAAATGATATCC+AGG + chr4_1:44448430-44448449 None:intergenic 30.0%
TTGAATTGAATGTGCTTTCA+TGG - chr4_1:44448502-44448521 Msa0549340:CDS 30.0%
AAATAGAGCAAGAACAACAT+AGG - chr4_1:44448568-44448587 Msa0549340:CDS 30.0%
ACAAACATGGAATTAACATG+AGG + chr4_1:44448878-44448897 None:intergenic 30.0%
TTACAAAAAACGAGTGTCTA+GGG + chr4_1:44448918-44448937 None:intergenic 30.0%
AGAGATACTTAGCATATGTT+TGG + chr4_1:44448982-44449001 None:intergenic 30.0%
GCAAGATTACTTTCAATCAA+TGG + chr4_1:44449063-44449082 None:intergenic 30.0%
TTTACAGAATTTAGTGCTTC+TGG - chr4_1:44449319-44449338 Msa0549340:intron 30.0%
TTACAGAATTTAGTGCTTCT+GGG - chr4_1:44449320-44449339 Msa0549340:intron 30.0%
!! TCAATAAAACTTGCTATTCG+TGG - chr4_1:44449848-44449867 Msa0549340:intron 30.0%
TTCGTGGAATCATTAAATTG+TGG - chr4_1:44449864-44449883 Msa0549340:intron 30.0%
GAGTAACATTGTTTATCGTA+TGG - chr4_1:44450088-44450107 Msa0549340:intron 30.0%
AACATTGTTTATCGTATGGT+TGG - chr4_1:44450092-44450111 Msa0549340:intron 30.0%
ACATTGTTTATCGTATGGTT+GGG - chr4_1:44450093-44450112 Msa0549340:intron 30.0%
AATATACGTTGGTCATTACT+TGG + chr4_1:44450149-44450168 None:intergenic 30.0%
AATGACCAACGTATATTTCA+CGG - chr4_1:44450152-44450171 Msa0549340:intron 30.0%
!!! CGTTTATTTTGACTCTCAAA+TGG - chr4_1:44450370-44450389 Msa0549340:CDS 30.0%
!! AATTTTGACAGCTCCTACTT+TGG + chr4_1:44442858-44442877 None:intergenic 35.0%
GAGCTGTCAAAATTAAGAAG+TGG - chr4_1:44442864-44442883 Msa0549340:three_prime_UTR 35.0%
!! CCTGGAAATAACGTCATTTT+TGG + chr4_1:44443019-44443038 None:intergenic 35.0%
! CCAAAAATGACGTTATTTCC+AGG - chr4_1:44443016-44443035 Msa0549340:three_prime_UTR 35.0%
CAAAGACATGTAAACAGCTT+TGG - chr4_1:44443039-44443058 Msa0549340:three_prime_UTR 35.0%
CCGTAAATTTGGTAAAGTTG+AGG - chr4_1:44443112-44443131 Msa0549340:three_prime_UTR 35.0%
TTCTCTCTTATATATGGGAC+CGG + chr4_1:44443358-44443377 None:intergenic 35.0%
! TCTGGTCCAAATTTTAAACC+AGG + chr4_1:44443406-44443425 None:intergenic 35.0%
!! TCAACAAAAGTTGATGCATC+TGG + chr4_1:44443424-44443443 None:intergenic 35.0%
CAATAAGCAACTACTTCATC+CGG + chr4_1:44443470-44443489 None:intergenic 35.0%
CCTTACAATAAAAGCAACCA+AGG + chr4_1:44443657-44443676 None:intergenic 35.0%
!!! CCTTGGTTGCTTTTATTGTA+AGG - chr4_1:44443654-44443673 Msa0549340:intron 35.0%
!!! TGATTTGGTCAGTAGTGTTT+TGG - chr4_1:44443683-44443702 Msa0549340:intron 35.0%
!! AAATTGGTGGATTCTGTGTT+AGG - chr4_1:44443755-44443774 Msa0549340:intron 35.0%
TCACACTAATGTCAGAGAAT+CGG + chr4_1:44443783-44443802 None:intergenic 35.0%
TTCTGATTTCTGTAGGATCA+AGG - chr4_1:44443899-44443918 Msa0549340:intron 35.0%
TCTGATTTCTGTAGGATCAA+GGG - chr4_1:44443900-44443919 Msa0549340:intron 35.0%
CATGATTATGGGCAATTTCA+AGG - chr4_1:44443923-44443942 Msa0549340:intron 35.0%
CAATTTCAAGGCAAAAGCTT+TGG - chr4_1:44443935-44443954 Msa0549340:intron 35.0%
CTGTACAATGTGCATCTAAT+TGG - chr4_1:44444004-44444023 Msa0549340:intron 35.0%
GGCAATGACAAAAGATGAAA+AGG + chr4_1:44444041-44444060 None:intergenic 35.0%
! ATCTTTTGTCATTGCCTTGT+TGG - chr4_1:44444045-44444064 Msa0549340:intron 35.0%
CTTGTTGGATGTAATGTGTT+GGG - chr4_1:44444060-44444079 Msa0549340:intron 35.0%
ATGCAAGTCTTAACAGTGTA+TGG + chr4_1:44444095-44444114 None:intergenic 35.0%
GCATGCACCTATTTGTATAT+TGG - chr4_1:44444111-44444130 Msa0549340:intron 35.0%
AGAATTCACAACCTCTAATG+AGG - chr4_1:44444206-44444225 Msa0549340:intron 35.0%
GGAAAACTATTCGGAATCAT+AGG + chr4_1:44444601-44444620 None:intergenic 35.0%
! ATGATTCCGAATAGTTTTCC+TGG - chr4_1:44444601-44444620 Msa0549340:intron 35.0%
GTACTATTCTCGTTAAACTC+AGG + chr4_1:44444715-44444734 None:intergenic 35.0%
GAGAATAGTACACAACACAA+GGG - chr4_1:44444724-44444743 Msa0549340:intron 35.0%
CTAATGATGATCCTTATGCA+GGG - chr4_1:44444908-44444927 Msa0549340:intron 35.0%
GTCGGCAGAAATAAACTTAT+TGG + chr4_1:44445157-44445176 None:intergenic 35.0%
GAAAAAAAGACAGAGCTTGT+GGG + chr4_1:44445441-44445460 None:intergenic 35.0%
AGAAAAAAAGACAGAGCTTG+TGG + chr4_1:44445442-44445461 None:intergenic 35.0%
TAAGGGCCAATCACTTATAT+TGG + chr4_1:44445465-44445484 None:intergenic 35.0%
! GCTATGTAAGACAGTTTTCA+AGG + chr4_1:44445517-44445536 None:intergenic 35.0%
CAAAATGTATACCTGTCTCA+AGG - chr4_1:44445540-44445559 Msa0549340:intron 35.0%
AAATGTGATGATTGGTGCAT+GGG + chr4_1:44445911-44445930 None:intergenic 35.0%
ATATCATATTCAGCCTGTGA+AGG + chr4_1:44445971-44445990 None:intergenic 35.0%
!! TGAGATTGGTTTCCATCATT+AGG + chr4_1:44446298-44446317 None:intergenic 35.0%
CCTGTTTCCATAATTGAGAT+TGG + chr4_1:44446312-44446331 None:intergenic 35.0%
CCAATCTCAATTATGGAAAC+AGG - chr4_1:44446309-44446328 Msa0549340:intron 35.0%
GAAACAGGATCATCAAATTG+CGG - chr4_1:44446324-44446343 Msa0549340:intron 35.0%
ATATTCCTAAACTGCTGAGA+TGG + chr4_1:44446364-44446383 None:intergenic 35.0%
TGATACTGATGACTGAAATG+GGG + chr4_1:44446577-44446596 None:intergenic 35.0%
CTGATACTGATGACTGAAAT+GGG + chr4_1:44446578-44446597 None:intergenic 35.0%
AAATGCTGGGGGTTATTATT+AGG + chr4_1:44446712-44446731 None:intergenic 35.0%
ATTAGATTGCTGGAAATGCT+GGG + chr4_1:44446725-44446744 None:intergenic 35.0%
TATTAGATTGCTGGAAATGC+TGG + chr4_1:44446726-44446745 None:intergenic 35.0%
! CAATAGAATTATTGGGTTGC+TGG + chr4_1:44446765-44446784 None:intergenic 35.0%
! CTGTATTTGGAGTAGAAGAT+TGG + chr4_1:44446968-44446987 None:intergenic 35.0%
TTACACTAGCAAGTGTATCA+AGG + chr4_1:44447170-44447189 None:intergenic 35.0%
!! GGTTGACAACAGTTTTAACA+AGG + chr4_1:44447422-44447441 None:intergenic 35.0%
! TGAAATTTGAAACTCGGGTA+AGG + chr4_1:44447443-44447462 None:intergenic 35.0%
GTGACAAATAAGTAGGTGTA+TGG + chr4_1:44447544-44447563 None:intergenic 35.0%
AGAGCATGTGACAAATAAGT+AGG + chr4_1:44447551-44447570 None:intergenic 35.0%
TCAAACACATTCAATCCAGA+AGG + chr4_1:44447635-44447654 None:intergenic 35.0%
GCAATATTGTGACAAACTCT+TGG - chr4_1:44447661-44447680 Msa0549340:CDS 35.0%
!!! TAGAAGGTAGTTTTTAGGGT+TGG - chr4_1:44447803-44447822 Msa0549340:CDS 35.0%
!! GGGGTTATTTTCACTATGTA+AGG - chr4_1:44447861-44447880 Msa0549340:CDS 35.0%
TTCCCATCTAACCATAACTA+GGG - chr4_1:44447967-44447986 Msa0549340:intron 35.0%
ATCCCTAGTTATGGTTAGAT+GGG + chr4_1:44447972-44447991 None:intergenic 35.0%
AATCCCTAGTTATGGTTAGA+TGG + chr4_1:44447973-44447992 None:intergenic 35.0%
GAATGTGGTACCAAATTTGT+TGG + chr4_1:44448012-44448031 None:intergenic 35.0%
GGAGTTGCTAAAATATCAGT+GGG + chr4_1:44448147-44448166 None:intergenic 35.0%
! TCCTAATGAGTTTTCCAACT+TGG - chr4_1:44448175-44448194 Msa0549340:intron 35.0%
! ACCAAGTTGGAAAACTCATT+AGG + chr4_1:44448179-44448198 None:intergenic 35.0%
ACATTTCAACAAAACTCACG+TGG - chr4_1:44448300-44448319 Msa0549340:intron 35.0%
ATTATTGCAATCTGTGTCTC+TGG - chr4_1:44448331-44448350 Msa0549340:intron 35.0%
TGCAAACAAATGATATCCAG+GGG + chr4_1:44448428-44448447 None:intergenic 35.0%
CTCATTAAACAAAGCCATCA+GGG + chr4_1:44448537-44448556 None:intergenic 35.0%
TCTCATTAAACAAAGCCATC+AGG + chr4_1:44448538-44448557 None:intergenic 35.0%
!! TGGCTTTGTTTAATGAGACA+TGG - chr4_1:44448540-44448559 Msa0549340:CDS 35.0%
!! GGCTTTGTTTAATGAGACAT+GGG - chr4_1:44448541-44448560 Msa0549340:CDS 35.0%
AAGAACAACATAGGTCTAGT+TGG - chr4_1:44448577-44448596 Msa0549340:CDS 35.0%
! ACTGGGTGTTAATTTTCACA+CGG + chr4_1:44448720-44448739 None:intergenic 35.0%
AGTGAATGACAACAAACATG+AGG + chr4_1:44448844-44448863 None:intergenic 35.0%
TACAAAAAACGAGTGTCTAG+GGG + chr4_1:44448917-44448936 None:intergenic 35.0%
GTTACAAAAAACGAGTGTCT+AGG + chr4_1:44448919-44448938 None:intergenic 35.0%
! ATGCTAAGTATCTCTAGTTC+AGG - chr4_1:44448987-44449006 Msa0549340:CDS 35.0%
! TGCTAAGTATCTCTAGTTCA+GGG - chr4_1:44448988-44449007 Msa0549340:CDS 35.0%
!!! TTTTTTTATTCGAGACGTGC+CGG - chr4_1:44449097-44449116 Msa0549340:CDS 35.0%
ACAAAGATAGTTGGATCTAG+CGG + chr4_1:44449192-44449211 None:intergenic 35.0%
!! ATTTCTGAAGTACGGTACTA+TGG + chr4_1:44449291-44449310 None:intergenic 35.0%
!! CCTTGTTCATTTCTGAAGTA+CGG + chr4_1:44449299-44449318 None:intergenic 35.0%
CTACTTGATTAAGGAGAGTT+TGG + chr4_1:44449390-44449409 None:intergenic 35.0%
ATCACTGAGCTACTTGATTA+AGG + chr4_1:44449399-44449418 None:intergenic 35.0%
CATAATATATGTGAGGGGAT+CGG - chr4_1:44449559-44449578 Msa0549340:CDS 35.0%
ATAATATATGTGAGGGGATC+GGG - chr4_1:44449560-44449579 Msa0549340:CDS 35.0%
TAGTCTGGTATGTATGCTAA+GGG - chr4_1:44449727-44449746 Msa0549340:intron 35.0%
ATGACTCAACGTGATTTCAA+CGG + chr4_1:44449973-44449992 None:intergenic 35.0%
! ACTATGTCGTTGATGCATTT+TGG - chr4_1:44450066-44450085 Msa0549340:intron 35.0%
CATTGTTTATCGTATGGTTG+GGG - chr4_1:44450094-44450113 Msa0549340:intron 35.0%
ATTGTTTATCGTATGGTTGG+GGG - chr4_1:44450095-44450114 Msa0549340:intron 35.0%
TATGTCCGTGAAATATACGT+TGG + chr4_1:44450160-44450179 None:intergenic 35.0%
!! ACATGTAAACAGCTTTGGGT+AGG - chr4_1:44443044-44443063 Msa0549340:three_prime_UTR 40.0%
AGTCTTCCTTTGTTACAGCT+GGG + chr4_1:44443079-44443098 None:intergenic 40.0%
AAGTCTTCCTTTGTTACAGC+TGG + chr4_1:44443080-44443099 None:intergenic 40.0%
AGCTGTAACAAAGGAAGACT+TGG - chr4_1:44443079-44443098 Msa0549340:three_prime_UTR 40.0%
! GAAGCTGACTTCCGTAAATT+TGG - chr4_1:44443101-44443120 Msa0549340:three_prime_UTR 40.0%
ATGAATGGAAAACGTATCGG+TGG - chr4_1:44443215-44443234 Msa0549340:intron 40.0%
! TGAATGGAAAACGTATCGGT+GGG - chr4_1:44443216-44443235 Msa0549340:intron 40.0%
ATAAATATCCCGACGTCTCA+CGG - chr4_1:44443494-44443513 Msa0549340:intron 40.0%
! ACAACTTGTTCGGTAATCCT+CGG + chr4_1:44443820-44443839 None:intergenic 40.0%
! TAGGATCAAGGGCATGATTA+TGG - chr4_1:44443911-44443930 Msa0549340:intron 40.0%
! AGGATCAAGGGCATGATTAT+GGG - chr4_1:44443912-44443931 Msa0549340:intron 40.0%
GGGCTTTCTGATTCTTATTC+TGG - chr4_1:44443956-44443975 Msa0549340:intron 40.0%
TTGTACAGTATTCTCACCAG+TGG + chr4_1:44443992-44444011 None:intergenic 40.0%
CCAACACATTACATCCAACA+AGG + chr4_1:44444062-44444081 None:intergenic 40.0%
CCTTGTTGGATGTAATGTGT+TGG - chr4_1:44444059-44444078 Msa0549340:intron 40.0%
! GGCTGATGTTTTCTTTATGC+TGG - chr4_1:44444132-44444151 Msa0549340:intron 40.0%
ATTCACAACCTCTAATGAGG+AGG - chr4_1:44444209-44444228 Msa0549340:intron 40.0%
TGCTCATCGATCTGAACATT+GGG + chr4_1:44444280-44444299 None:intergenic 40.0%
TTGCTCATCGATCTGAACAT+TGG + chr4_1:44444281-44444300 None:intergenic 40.0%
CAAAAAGGATCATGGCATTG+TGG + chr4_1:44444309-44444328 None:intergenic 40.0%
! CACAATGCCATGATCCTTTT+TGG - chr4_1:44444307-44444326 Msa0549340:intron 40.0%
!! TTAGAAGTGTTGATGAAGCC+CGG - chr4_1:44444383-44444402 Msa0549340:intron 40.0%
! GCTTTTATCCTGGGAGTAAT+GGG - chr4_1:44444503-44444522 Msa0549340:intron 40.0%
GTCGATATGGATGCTCATTT+AGG + chr4_1:44444546-44444565 None:intergenic 40.0%
CCAAATGAATCCATTTGTGC+AGG + chr4_1:44444568-44444587 None:intergenic 40.0%
! CCTGCACAAATGGATTCATT+TGG - chr4_1:44444565-44444584 Msa0549340:intron 40.0%
TTTCCTGGACAATTGCCAAA+TGG - chr4_1:44444616-44444635 Msa0549340:intron 40.0%
TTGCCAAATGGTGGTATTGT+TGG - chr4_1:44444628-44444647 Msa0549340:intron 40.0%
CGAGAATAGTACACAACACA+AGG - chr4_1:44444723-44444742 Msa0549340:intron 40.0%
CCTGCATAAGGATCATCATT+AGG + chr4_1:44444910-44444929 None:intergenic 40.0%
CCTAATGATGATCCTTATGC+AGG - chr4_1:44444907-44444926 Msa0549340:intron 40.0%
CTGTCCAACCTGATCATATA+TGG - chr4_1:44444983-44445002 Msa0549340:intron 40.0%
GGGTCAAATGCAAAAGAAGT+CGG + chr4_1:44445175-44445194 None:intergenic 40.0%
! ACTTTTCCAGCAAATAGGGA+TGG + chr4_1:44445200-44445219 None:intergenic 40.0%
TCTAAACAAGACCTTGAGAC+AGG + chr4_1:44445554-44445573 None:intergenic 40.0%
!! TGTCTCAAGGTCTTGTTTAG+AGG - chr4_1:44445553-44445572 Msa0549340:intron 40.0%
TTATTGCAGTCCTGAAGTTG+TGG - chr4_1:44445601-44445620 Msa0549340:intron 40.0%
ACATCTGTCAGGAAATCAGA+AGG + chr4_1:44445818-44445837 None:intergenic 40.0%
TGACTTTCAGAACATCTGTC+AGG + chr4_1:44445829-44445848 None:intergenic 40.0%
!! ACAGATGTTCTGAAAGTCAC+CGG - chr4_1:44445830-44445849 Msa0549340:intron 40.0%
CAAATGTGATGATTGGTGCA+TGG + chr4_1:44445912-44445931 None:intergenic 40.0%
GTACAGGCAAATGTGATGAT+TGG + chr4_1:44445919-44445938 None:intergenic 40.0%
TGATATGAATCCTGCAAAGG+AGG - chr4_1:44445985-44446004 Msa0549340:intron 40.0%
! AAAACTTGTTCCTCCTTTGC+AGG + chr4_1:44445998-44446017 None:intergenic 40.0%
TAGAATCCTCGTGCAACATT+CGG + chr4_1:44446036-44446055 None:intergenic 40.0%
AAACAAGTATACCCACCTAC+AGG - chr4_1:44446067-44446086 Msa0549340:intron 40.0%
GCTAAAGTTGCAATAAGCTC+AGG + chr4_1:44446178-44446197 None:intergenic 40.0%
AAACTGCTGAGATGGATGAA+TGG + chr4_1:44446356-44446375 None:intergenic 40.0%
TTCATCCATCTCAGCAGTTT+AGG - chr4_1:44446356-44446375 Msa0549340:intron 40.0%
TTTGTGACACCTACTCAAAG+TGG - chr4_1:44446535-44446554 Msa0549340:CDS 40.0%
ATACTGATGACTGAAATGGG+GGG + chr4_1:44446575-44446594 None:intergenic 40.0%
GATACTGATGACTGAAATGG+GGG + chr4_1:44446576-44446595 None:intergenic 40.0%
CCTGATACTGATGACTGAAA+TGG + chr4_1:44446579-44446598 None:intergenic 40.0%
CCATTTCAGTCATCAGTATC+AGG - chr4_1:44446576-44446595 Msa0549340:CDS 40.0%
!! AAAGCCTTTCTGAGTATTGG+GGG + chr4_1:44446611-44446630 None:intergenic 40.0%
! GAAAGCCTTTCTGAGTATTG+GGG + chr4_1:44446612-44446631 None:intergenic 40.0%
GGAAAGCCTTTCTGAGTATT+GGG + chr4_1:44446613-44446632 None:intergenic 40.0%
TGGAAAGCCTTTCTGAGTAT+TGG + chr4_1:44446614-44446633 None:intergenic 40.0%
AATACTCAGAAAGGCTTTCC+AGG - chr4_1:44446613-44446632 Msa0549340:CDS 40.0%
AAAACAGAGACATCACTTCC+TGG + chr4_1:44446634-44446653 None:intergenic 40.0%
! GGTGGTTATTATTAGGTTGC+TGG + chr4_1:44446675-44446694 None:intergenic 40.0%
! TATTAGGTTGCTGGAAAGGA+TGG + chr4_1:44446696-44446715 None:intergenic 40.0%
TTAGATTGCTGGAAATGCTG+GGG + chr4_1:44446724-44446743 None:intergenic 40.0%
GGGGGTTATTATTAGATTGC+TGG + chr4_1:44446735-44446754 None:intergenic 40.0%
! GAATTATTGGGTTGCTGGAA+AGG + chr4_1:44446760-44446779 None:intergenic 40.0%
! GTTTGAGTTTACTTGGTCTG+CGG + chr4_1:44446845-44446864 None:intergenic 40.0%
TCTTATCAGCCTCCAATTCT+GGG + chr4_1:44446912-44446931 None:intergenic 40.0%
TTCTTATCAGCCTCCAATTC+TGG + chr4_1:44446913-44446932 None:intergenic 40.0%
CTCCCAAAAAGTTCACTTTG+TGG - chr4_1:44447137-44447156 Msa0549340:CDS 40.0%
TTGCTAGTGTAAATGATCCG+CGG - chr4_1:44447178-44447197 Msa0549340:CDS 40.0%
! TTAGATTTGGTAGGCAGTGT+TGG - chr4_1:44447300-44447319 Msa0549340:CDS 40.0%
! TAGATTTGGTAGGCAGTGTT+GGG - chr4_1:44447301-44447320 Msa0549340:CDS 40.0%
CAGGTGAAAAGATGCAAACT+AGG + chr4_1:44447364-44447383 None:intergenic 40.0%
CATTGCTGTAGTTTACCTTC+TGG - chr4_1:44447617-44447636 Msa0549340:CDS 40.0%
GATGGGAAGGTAGTAAACAA+TGG + chr4_1:44447955-44447974 None:intergenic 40.0%
CTAGTTATGGTTAGATGGGA+AGG + chr4_1:44447968-44447987 None:intergenic 40.0%
CTTCCCATCTAACCATAACT+AGG - chr4_1:44447966-44447985 Msa0549340:intron 40.0%
GTCAAGCAAATCCCTAGTTA+TGG + chr4_1:44447981-44448000 None:intergenic 40.0%
ACTGAACCAGCCAACAAATT+TGG - chr4_1:44447999-44448018 Msa0549340:intron 40.0%
TTTGGTACCACATTCCATTG+TGG - chr4_1:44448017-44448036 Msa0549340:intron 40.0%
CAGTGGGTATTAAGATCTCA+GGG + chr4_1:44448131-44448150 None:intergenic 40.0%
TCAGTGGGTATTAAGATCTC+AGG + chr4_1:44448132-44448151 None:intergenic 40.0%
CGGAGTTGCTAAAATATCAG+TGG + chr4_1:44448148-44448167 None:intergenic 40.0%
CATATGTTTGGTTGTGCAGT+GGG + chr4_1:44448970-44448989 None:intergenic 40.0%
! GCTAAGTATCTCTAGTTCAG+GGG - chr4_1:44448989-44449008 Msa0549340:CDS 40.0%
CCGTACTTCAGAAATGAACA+AGG - chr4_1:44449296-44449315 Msa0549340:intron 40.0%
TAATATATGTGAGGGGATCG+GGG - chr4_1:44449561-44449580 Msa0549340:CDS 40.0%
! AGGTAAATAGTTGAGGTGTC+TGG + chr4_1:44449595-44449614 None:intergenic 40.0%
CTAGTCTGGTATGTATGCTA+AGG - chr4_1:44449726-44449745 Msa0549340:intron 40.0%
GGGGATTTCAGAATTCTCAA+CGG - chr4_1:44450114-44450133 Msa0549340:intron 40.0%
GGGATTTCAGAATTCTCAAC+GGG - chr4_1:44450115-44450134 Msa0549340:intron 40.0%
TTCACGGACATAAATGTCGA+TGG - chr4_1:44450168-44450187 Msa0549340:intron 40.0%
TAGGCAATGTGTTGTGGTTA+GGG - chr4_1:44450398-44450417 Msa0549340:CDS 40.0%
GCTGTTTACATGTCTTTGCC+TGG + chr4_1:44443037-44443056 None:intergenic 45.0%
!! TGTAAACAGCTTTGGGTAGG+TGG - chr4_1:44443047-44443066 Msa0549340:three_prime_UTR 45.0%
CATTAGCCCAGCTGTAACAA+AGG - chr4_1:44443070-44443089 Msa0549340:three_prime_UTR 45.0%
! GAATGGAAAACGTATCGGTG+GGG - chr4_1:44443217-44443236 Msa0549340:intron 45.0%
TTGATCGGAGGAAGTCAACA+CGG + chr4_1:44443250-44443269 None:intergenic 45.0%
TCTCTTATATATGGGACCGG+AGG + chr4_1:44443355-44443374 None:intergenic 45.0%
! TCAATTTGGTAACTGGGGTG+TGG - chr4_1:44443531-44443550 Msa0549340:intron 45.0%
! AACTTGTTCGGTAATCCTCG+GGG + chr4_1:44443818-44443837 None:intergenic 45.0%
! CAACTTGTTCGGTAATCCTC+GGG + chr4_1:44443819-44443838 None:intergenic 45.0%
TTCTGGACAAAAAAGGCCAC+TGG - chr4_1:44443973-44443992 Msa0549340:intron 45.0%
ACAACCTCTAATGAGGAGGA+AGG - chr4_1:44444213-44444232 Msa0549340:intron 45.0%
CAACCTCTAATGAGGAGGAA+GGG - chr4_1:44444214-44444233 Msa0549340:intron 45.0%
TCATCGATCTGAACATTGGG+GGG + chr4_1:44444277-44444296 None:intergenic 45.0%
CTCATCGATCTGAACATTGG+GGG + chr4_1:44444278-44444297 None:intergenic 45.0%
GCTCATCGATCTGAACATTG+GGG + chr4_1:44444279-44444298 None:intergenic 45.0%
GTGCAAAAGAGGGTCTTCAA+GGG - chr4_1:44444407-44444426 Msa0549340:intron 45.0%
TCTAATGGTGACCAGGTACA+CGG - chr4_1:44444466-44444485 Msa0549340:intron 45.0%
!! ACTACCCTGGCTTTTATCCT+GGG - chr4_1:44444494-44444513 Msa0549340:intron 45.0%
TACTCCCAGGATAAAAGCCA+GGG + chr4_1:44444501-44444520 None:intergenic 45.0%
TTACTCCCAGGATAAAAGCC+AGG + chr4_1:44444502-44444521 None:intergenic 45.0%
! GGCTTTTATCCTGGGAGTAA+TGG - chr4_1:44444502-44444521 Msa0549340:intron 45.0%
TCCATATCGACCTGCACAAA+TGG - chr4_1:44444555-44444574 Msa0549340:intron 45.0%
TCCATTTGTGCAGGTCGATA+TGG + chr4_1:44444559-44444578 None:intergenic 45.0%
GGACCAACAATACCACCATT+TGG + chr4_1:44444634-44444653 None:intergenic 45.0%
TTGGTCCAAACATACCAGTG+CGG - chr4_1:44444647-44444666 Msa0549340:intron 45.0%
ACAGATTCAGGACCACCATT+AGG + chr4_1:44444682-44444701 None:intergenic 45.0%
!! GGTCCTGAATCTGTTGTTTC+TGG - chr4_1:44444688-44444707 Msa0549340:intron 45.0%
ACAAGGGTCCAAACTGGAAA+CGG - chr4_1:44444740-44444759 Msa0549340:intron 45.0%
! GTTGCTTTCTTCTCCTGTAC+CGG - chr4_1:44444783-44444802 Msa0549340:intron 45.0%
TTGCTTTCTTCTCCTGTACC+GGG - chr4_1:44444784-44444803 Msa0549340:intron 45.0%
CTTGACCGCTTAGAATCTCT+TGG + chr4_1:44444871-44444890 None:intergenic 45.0%
CAAGAGATTCTAAGCGGTCA+AGG - chr4_1:44444869-44444888 Msa0549340:intron 45.0%
TCTAAGCGGTCAAGGATAGA+TGG - chr4_1:44444877-44444896 Msa0549340:intron 45.0%
ATGATGATCCTTATGCAGGG+AGG - chr4_1:44444911-44444930 Msa0549340:intron 45.0%
TGATGATCCTTATGCAGGGA+GGG - chr4_1:44444912-44444931 Msa0549340:intron 45.0%
CAACCTGATCATATATGGCG+CGG - chr4_1:44444988-44445007 Msa0549340:intron 45.0%
TTCCAGCAAATAGGGATGGA+GGG + chr4_1:44445196-44445215 None:intergenic 45.0%
TTTCCAGCAAATAGGGATGG+AGG + chr4_1:44445197-44445216 None:intergenic 45.0%
! AGTGATTGGCCCTTAGTTCT+TGG - chr4_1:44445470-44445489 Msa0549340:intron 45.0%
! TGGCCCTTAGTTCTTGGAAA+TGG - chr4_1:44445476-44445495 Msa0549340:intron 45.0%
! GGCCCTTAGTTCTTGGAAAT+GGG - chr4_1:44445477-44445496 Msa0549340:intron 45.0%
GGCCCATTTCCAAGAACTAA+GGG + chr4_1:44445482-44445501 None:intergenic 45.0%
! AAGTTGTGGATTGCTCAGCT+AGG - chr4_1:44445615-44445634 Msa0549340:intron 45.0%
ACTGAATTCCTACGCTACCT+TGG - chr4_1:44445734-44445753 Msa0549340:intron 45.0%
! TTTTTGCACCAAGGTAGCGT+AGG + chr4_1:44445745-44445764 None:intergenic 45.0%
!!! CAGCACGATTTTTTGCACCA+AGG + chr4_1:44445754-44445773 None:intergenic 45.0%
! CTTGGTGCAAAAAATCGTGC+TGG - chr4_1:44445752-44445771 Msa0549340:intron 45.0%
TCTGTCAGGAAATCAGAAGG+AGG + chr4_1:44445815-44445834 None:intergenic 45.0%
ACCATATAGACGTTCAGGTC+CGG + chr4_1:44445852-44445871 None:intergenic 45.0%
ACGACACCATATAGACGTTC+AGG + chr4_1:44445857-44445876 None:intergenic 45.0%
TCATATTCAGCCTGTGAAGG+AGG + chr4_1:44445968-44445987 None:intergenic 45.0%
TTACAACCGAATGTTGCACG+AGG - chr4_1:44446027-44446046 Msa0549340:intron 45.0%
GGTGGGTATACTTGTTTAGC+AGG + chr4_1:44446064-44446083 None:intergenic 45.0%
AAGTATACCCACCTACAGGT+GGG - chr4_1:44446071-44446090 Msa0549340:intron 45.0%
! GCAGTGTTTAGAGCATAGTC+CGG + chr4_1:44446121-44446140 None:intergenic 45.0%
! CTCTAAACACTGCTGCTTCT+GGG - chr4_1:44446128-44446147 Msa0549340:intron 45.0%
GACTTAGCACCATCAATAGC+AGG + chr4_1:44446229-44446248 None:intergenic 45.0%
!! GCTATTGATGGTGCTAAGTC+AGG - chr4_1:44446229-44446248 Msa0549340:intron 45.0%
AAATGGAGGCTTCACAGTTG+AGG + chr4_1:44446263-44446282 None:intergenic 45.0%
! TTTCCATCATTAGGTGCCAC+AGG + chr4_1:44446289-44446308 None:intergenic 45.0%
!! AAACAACTCCTTGCTGTTGC+TGG + chr4_1:44446495-44446514 None:intergenic 45.0%
!! AAGCCTTTCTGAGTATTGGG+GGG + chr4_1:44446610-44446629 None:intergenic 45.0%
! GGGGGTTATTATTAGGTTGC+TGG + chr4_1:44446705-44446724 None:intergenic 45.0%
TAGATTGCTGGAAATGCTGG+GGG + chr4_1:44446723-44446742 None:intergenic 45.0%
TCTGCGGTATATTGCATGAC+AGG + chr4_1:44446829-44446848 None:intergenic 45.0%
! TGGGAGGGTTTGAGTTTACT+TGG + chr4_1:44446852-44446871 None:intergenic 45.0%
AAGGCAGGATGTTGTTGGAT+GGG + chr4_1:44446871-44446890 None:intergenic 45.0%
AAAGGCAGGATGTTGTTGGA+TGG + chr4_1:44446872-44446891 None:intergenic 45.0%
ATCCAACAACATCCTGCCTT+TGG - chr4_1:44446871-44446890 Msa0549340:CDS 45.0%
TTATCAGCCTCCAATTCTGG+GGG + chr4_1:44446910-44446929 None:intergenic 45.0%
CTTATCAGCCTCCAATTCTG+GGG + chr4_1:44446911-44446930 None:intergenic 45.0%
! GCAATGTTGACTGGTATCTC+TGG + chr4_1:44446936-44446955 None:intergenic 45.0%
CAGCAAACTGCAATGTTGAC+TGG + chr4_1:44446945-44446964 None:intergenic 45.0%
! GTGTTTGCTGCTGCTGTATT+TGG + chr4_1:44446981-44447000 None:intergenic 45.0%
ATACAGCAGCAGCAAACACA+AGG - chr4_1:44446982-44447001 Msa0549340:CDS 45.0%
AGCAAACACAAGGAGGACAT+GGG - chr4_1:44446992-44447011 Msa0549340:CDS 45.0%
TGCTAGTGTAAATGATCCGC+GGG - chr4_1:44447179-44447198 Msa0549340:CDS 45.0%
GTTTACATGTCACATGACGC+AGG + chr4_1:44447212-44447231 None:intergenic 45.0%
! AGATTTGGTAGGCAGTGTTG+GGG - chr4_1:44447302-44447321 Msa0549340:CDS 45.0%
ACATCCTCCTTGCAAAGCTT+TGG + chr4_1:44447329-44447348 None:intergenic 45.0%
!! GTGGTACCAAATTTGTTGGC+TGG + chr4_1:44448008-44448027 None:intergenic 45.0%
AAATTAGCGGGGATCCACAA+TGG + chr4_1:44448034-44448053 None:intergenic 45.0%
CAAGACTAGAGCCTATCCTT+AGG - chr4_1:44448393-44448412 Msa0549340:intron 45.0%
!! GGCTGACTTTTCCTAAGGAT+AGG + chr4_1:44448407-44448426 None:intergenic 45.0%
GCATATGTTTGGTTGTGCAG+TGG + chr4_1:44448971-44448990 None:intergenic 45.0%
AGGGGCAATTGATGCATAAC+TGG - chr4_1:44449007-44449026 Msa0549340:CDS 45.0%
!! AGTACGCGCATTTTAGTGTC+CGG + chr4_1:44449119-44449138 None:intergenic 45.0%
GATAGTTGGATCTAGCGGAA+GGG + chr4_1:44449187-44449206 None:intergenic 45.0%
AGATAGTTGGATCTAGCGGA+AGG + chr4_1:44449188-44449207 None:intergenic 45.0%
TTCATCCGTTATTGCAGCGT+TGG - chr4_1:44449346-44449365 Msa0549340:intron 45.0%
ATGCTCCAACGCTGCAATAA+CGG + chr4_1:44449354-44449373 None:intergenic 45.0%
ACGGGCGCATAATATATGTG+AGG - chr4_1:44449552-44449571 Msa0549340:CDS 45.0%
CGGGCGCATAATATATGTGA+GGG - chr4_1:44449553-44449572 Msa0549340:CDS 45.0%
GGGCGCATAATATATGTGAG+GGG - chr4_1:44449554-44449573 Msa0549340:CDS 45.0%
TCAACGACATAGTGCGTGTT+TGG + chr4_1:44450059-44450078 None:intergenic 45.0%
GTAGGCAATGTGTTGTGGTT+AGG - chr4_1:44450397-44450416 Msa0549340:CDS 45.0%
!! AAATAAATATATAAATAAGA+TGG - chr4_1:44448810-44448829 Msa0549340:CDS 5.0%
TGACTATTCCACTAACCCCG+AGG - chr4_1:44443800-44443819 Msa0549340:intron 50.0%
TCACCCTTCCTCCTCATTAG+AGG + chr4_1:44444220-44444239 None:intergenic 50.0%
CTAATGAGGAGGAAGGGTGA+CGG - chr4_1:44444220-44444239 Msa0549340:intron 50.0%
CGTGCAAAAGAGGGTCTTCA+AGG - chr4_1:44444406-44444425 Msa0549340:intron 50.0%
!! GACTACCCTGGCTTTTATCC+TGG - chr4_1:44444493-44444512 Msa0549340:intron 50.0%
CCACCATTTGGCAATTGTCC+AGG + chr4_1:44444622-44444641 None:intergenic 50.0%
CCTGGACAATTGCCAAATGG+TGG - chr4_1:44444619-44444638 Msa0549340:intron 50.0%
! AAAGGCCGCACTGGTATGTT+TGG + chr4_1:44444655-44444674 None:intergenic 50.0%
! AACATACCAGTGCGGCCTTT+TGG - chr4_1:44444655-44444674 Msa0549340:intron 50.0%
GGACCACCATTAGGACCAAA+AGG + chr4_1:44444673-44444692 None:intergenic 50.0%
GGGCCAGAAACAACAGATTC+AGG + chr4_1:44444694-44444713 None:intergenic 50.0%
CACAACACAAGGGTCCAAAC+TGG - chr4_1:44444734-44444753 Msa0549340:intron 50.0%
GAAGAAAGCAACCCTTGTGC+AGG + chr4_1:44444775-44444794 None:intergenic 50.0%
AAGATCGTCCTCTGGTGCAT+GGG - chr4_1:44444822-44444841 Msa0549340:intron 50.0%
AAGTACATCCCATGCACCAG+AGG + chr4_1:44444833-44444852 None:intergenic 50.0%
GATGATCCTTATGCAGGGAG+GGG - chr4_1:44444913-44444932 Msa0549340:intron 50.0%
TCAGCAAGCACGAGGATTAC+AGG - chr4_1:44444946-44444965 Msa0549340:intron 50.0%
CGCGCCATATATGATCAGGT+TGG + chr4_1:44444990-44445009 None:intergenic 50.0%
AGTCCGCGCCATATATGATC+AGG + chr4_1:44444994-44445013 None:intergenic 50.0%
TGGCGCGGACTTATTGCAAA+AGG - chr4_1:44445003-44445022 Msa0549340:intron 50.0%
CGCGGACTTATTGCAAAAGG+AGG - chr4_1:44445006-44445025 Msa0549340:intron 50.0%
ACGCATCTAGCACGACAAAC+AGG + chr4_1:44445036-44445055 None:intergenic 50.0%
TCCAGCAAATAGGGATGGAG+GGG + chr4_1:44445195-44445214 None:intergenic 50.0%
GGGCCCATTTCCAAGAACTA+AGG + chr4_1:44445483-44445502 None:intergenic 50.0%
GCTGAGCAATCCACAACTTC+AGG + chr4_1:44445614-44445633 None:intergenic 50.0%
! TGTGGATTGCTCAGCTAGGA+CGG - chr4_1:44445619-44445638 Msa0549340:intron 50.0%
ACCGGACCTGAACGTCTATA+TGG - chr4_1:44445848-44445867 Msa0549340:intron 50.0%
! AAGTTTGCACCAGTACCGAG+TGG - chr4_1:44445881-44445900 Msa0549340:intron 50.0%
CAAGTATACCCACCTACAGG+TGG - chr4_1:44446070-44446089 Msa0549340:intron 50.0%
! GCTCTAAACACTGCTGCTTC+TGG - chr4_1:44446127-44446146 Msa0549340:intron 50.0%
! TTAGGTGCCACAGGAGGAAA+TGG + chr4_1:44446280-44446299 None:intergenic 50.0%
AACGTTTGAGCAGTGTGGCT+AGG + chr4_1:44446436-44446455 None:intergenic 50.0%
CAGAGAACGTTTGAGCAGTG+TGG + chr4_1:44446441-44446460 None:intergenic 50.0%
CACACTGCTCAAACGTTCTC+TGG - chr4_1:44446439-44446458 Msa0549340:intron 50.0%
GACACCTACTCAAAGTGGAC+AGG - chr4_1:44446540-44446559 Msa0549340:CDS 50.0%
GCTACCTGTCCACTTTGAGT+AGG + chr4_1:44446547-44446566 None:intergenic 50.0%
GTTCCCCCCAATACTCAGAA+AGG - chr4_1:44446604-44446623 Msa0549340:CDS 50.0%
TAGGTTGCTGGAAAGGATGG+TGG + chr4_1:44446693-44446712 None:intergenic 50.0%
! ATTGGGTTGCTGGAAAGGCT+GGG + chr4_1:44446755-44446774 None:intergenic 50.0%
! TATTGGGTTGCTGGAAAGGC+TGG + chr4_1:44446756-44446775 None:intergenic 50.0%
CAGGATGTTGTTGGATGGGA+GGG + chr4_1:44446867-44446886 None:intergenic 50.0%
CTCCAAAGGCAGGATGTTGT+TGG + chr4_1:44446876-44446895 None:intergenic 50.0%
!! CAACATCCTGCCTTTGGAGT+TGG - chr4_1:44446877-44446896 Msa0549340:CDS 50.0%
TATCAGCCTCCAATTCTGGG+GGG + chr4_1:44446909-44446928 None:intergenic 50.0%
CAGCAAACACAAGGAGGACA+TGG - chr4_1:44446991-44447010 Msa0549340:CDS 50.0%
TTGGGGTCCAAAGCTTTGCA+AGG - chr4_1:44447319-44447338 Msa0549340:CDS 50.0%
CATGGTTCAATCAGCCCTGA+TGG - chr4_1:44448520-44448539 Msa0549340:CDS 50.0%
AGCAGACGCGGATACAAACA+TGG + chr4_1:44448891-44448910 None:intergenic 50.0%
TGACTCTCAAATGGACGCGT+AGG - chr4_1:44450379-44450398 Msa0549340:CDS 50.0%
TAGATCCTGCCGTGAGACGT+CGG + chr4_1:44443506-44443525 None:intergenic 55.0%
TCGGTAATCCTCGGGGTTAG+TGG + chr4_1:44443811-44443830 None:intergenic 55.0%
! AAGACCCTCTTTTGCACGCC+GGG + chr4_1:44444404-44444423 None:intergenic 55.0%
! GAAGACCCTCTTTTGCACGC+CGG + chr4_1:44444405-44444424 None:intergenic 55.0%
GGTAGTCTTTGCCGTGTACC+TGG + chr4_1:44444480-44444499 None:intergenic 55.0%
GTACACGGCAAAGACTACCC+TGG - chr4_1:44444481-44444500 Msa0549340:intron 55.0%
TTAGGACCAAAAGGCCGCAC+TGG + chr4_1:44444664-44444683 None:intergenic 55.0%
! GTGCGGCCTTTTGGTCCTAA+TGG - chr4_1:44444664-44444683 Msa0549340:intron 55.0%
! CGGCCTTTTGGTCCTAATGG+TGG - chr4_1:44444667-44444686 Msa0549340:intron 55.0%
GGAGATGGCCGTTTCCAGTT+TGG + chr4_1:44444751-44444770 None:intergenic 55.0%
AACCCTTGTGCAGGAGGAGA+TGG + chr4_1:44444766-44444785 None:intergenic 55.0%
GAAAGCAACCCTTGTGCAGG+AGG + chr4_1:44444772-44444791 None:intergenic 55.0%
CTTCCTGCAAGATCGTCCTC+TGG - chr4_1:44444814-44444833 Msa0549340:intron 55.0%
CAAGATCGTCCTCTGGTGCA+TGG - chr4_1:44444821-44444840 Msa0549340:intron 55.0%
AGGATACCCCTCCCTGCATA+AGG + chr4_1:44444922-44444941 None:intergenic 55.0%
!! TATGCAGGGAGGGGTATCCT+TGG - chr4_1:44444922-44444941 Msa0549340:intron 55.0%
TCCTTGGTTCAGCAAGCACG+AGG - chr4_1:44444938-44444957 Msa0549340:intron 55.0%
! TCCTCGTGCTTGCTGAACCA+AGG + chr4_1:44444942-44444961 None:intergenic 55.0%
GCAAGCACGAGGATTACAGG+TGG - chr4_1:44444949-44444968 Msa0549340:intron 55.0%
GTGCTAGATGCGTCCCTGTA+GGG - chr4_1:44445043-44445062 Msa0549340:intron 55.0%
AGATGCGTCCCTGTAGGGAA+AGG - chr4_1:44445048-44445067 Msa0549340:intron 55.0%
GATGCGTCCCTGTAGGGAAA+GGG - chr4_1:44445049-44445068 Msa0549340:intron 55.0%
GTCCCTGTAGGGAAAGGGAT+CGG - chr4_1:44445054-44445073 Msa0549340:intron 55.0%
TCCCTGTAGGGAAAGGGATC+GGG - chr4_1:44445055-44445074 Msa0549340:intron 55.0%
TCCCGATCCCTTTCCCTACA+GGG + chr4_1:44445059-44445078 None:intergenic 55.0%
ACCCCTCCATCCCTATTTGC+TGG - chr4_1:44445191-44445210 Msa0549340:intron 55.0%
! GTGGATTGCTCAGCTAGGAC+GGG - chr4_1:44445620-44445639 Msa0549340:intron 55.0%
TTGCTCAGCTAGGACGGGAT+TGG - chr4_1:44445625-44445644 Msa0549340:intron 55.0%
AAGAAGGCCCACCTGTAGGT+GGG + chr4_1:44446081-44446100 None:intergenic 55.0%
ACTGAAGAAGGCCCACCTGT+AGG + chr4_1:44446085-44446104 None:intergenic 55.0%
GCTGCAGGCTGAACTGAAGA+AGG + chr4_1:44446097-44446116 None:intergenic 55.0%
TTCAGTTCAGCCTGCAGCTC+CGG - chr4_1:44446099-44446118 Msa0549340:intron 55.0%
! GATGGTGCTAAGTCAGGTGC+AGG - chr4_1:44446235-44446254 Msa0549340:intron 55.0%
GAAGCCTCCATTTCCTCCTG+TGG - chr4_1:44446270-44446289 Msa0549340:intron 55.0%
! CCATCATTAGGTGCCACAGG+AGG + chr4_1:44446286-44446305 None:intergenic 55.0%
CCTCCTGTGGCACCTAATGA+TGG - chr4_1:44446283-44446302 Msa0549340:intron 55.0%
GCTGTTAGCCAGCAACAGCA+AGG - chr4_1:44446484-44446503 Msa0549340:CDS 55.0%
! TTGGGTTGCTGGAAAGGCTG+GGG + chr4_1:44446754-44446773 None:intergenic 55.0%
TGCATGACAGGCTGATGCTG+AGG + chr4_1:44446817-44446836 None:intergenic 55.0%
GCAGGATGTTGTTGGATGGG+AGG + chr4_1:44446868-44446887 None:intergenic 55.0%
CCTTGACCAACTCCAAAGGC+AGG + chr4_1:44446886-44446905 None:intergenic 55.0%
!! CCTGCCTTTGGAGTTGGTCA+AGG - chr4_1:44446883-44446902 Msa0549340:CDS 55.0%
CAGCAGCAGCAAACACAAGG+AGG - chr4_1:44446985-44447004 Msa0549340:CDS 55.0%
GGGTCCAAAGCTTTGCAAGG+AGG - chr4_1:44447322-44447341 Msa0549340:CDS 55.0%
CGGGGATCCACAATGGAATG+TGG + chr4_1:44448027-44448046 None:intergenic 55.0%
!! CCAGGGGCTGACTTTTCCTA+AGG + chr4_1:44448412-44448431 None:intergenic 55.0%
CCTTAGGAAAAGTCAGCCCC+TGG - chr4_1:44448409-44448428 Msa0549340:CDS 55.0%
GACGCGTAGGCAATGTGTTG+TGG - chr4_1:44450392-44450411 Msa0549340:CDS 55.0%
ATATCCCGACGTCTCACGGC+AGG - chr4_1:44443498-44443517 Msa0549340:intron 60.0%
AGATCCTGCCGTGAGACGTC+GGG + chr4_1:44443505-44443524 None:intergenic 60.0%
TGAAGCCCGGCGTGCAAAAG+AGG - chr4_1:44444396-44444415 Msa0549340:intron 60.0%
GAAGCCCGGCGTGCAAAAGA+GGG - chr4_1:44444397-44444416 Msa0549340:intron 60.0%
GGTCTTGGCCCATTACTCCC+AGG + chr4_1:44444514-44444533 None:intergenic 60.0%
GGCCATCTCCTCCTGCACAA+GGG - chr4_1:44444761-44444780 Msa0549340:intron 60.0%
CTTCTCCTGTACCGGGTGCT+AGG - chr4_1:44444791-44444810 Msa0549340:intron 60.0%
CTTGCAGGAAGCCTAGCACC+CGG + chr4_1:44444805-44444824 None:intergenic 60.0%
GCACCAGAGGACGATCTTGC+AGG + chr4_1:44444820-44444839 None:intergenic 60.0%
CGTGCTAGATGCGTCCCTGT+AGG - chr4_1:44445042-44445061 Msa0549340:intron 60.0%
GTCCCGATCCCTTTCCCTAC+AGG + chr4_1:44445060-44445079 None:intergenic 60.0%
ATGGGCACACCACTCGGTAC+TGG + chr4_1:44445893-44445912 None:intergenic 60.0%
TGGTGCATGGGCACACCACT+CGG + chr4_1:44445899-44445918 None:intergenic 60.0%
GCAGCAGATGCCTCCTTCAC+AGG - chr4_1:44445955-44445974 Msa0549340:intron 60.0%
GAAGAAGGCCCACCTGTAGG+TGG + chr4_1:44446082-44446101 None:intergenic 60.0%
AGAGCATAGTCCGGAGCTGC+AGG + chr4_1:44446112-44446131 None:intergenic 60.0%
GCTGCTTCTGGGTCTCAAGC+TGG - chr4_1:44446139-44446158 Msa0549340:intron 60.0%
GCAGGCGACTGCGCATTTGT+GGG + chr4_1:44446211-44446230 None:intergenic 60.0%
AGCAGGCGACTGCGCATTTG+TGG + chr4_1:44446212-44446231 None:intergenic 60.0%
GCGCAGTCGCCTGCTATTGA+TGG - chr4_1:44446217-44446236 Msa0549340:intron 60.0%
! GGTGCCACAGGAGGAAATGG+AGG + chr4_1:44446277-44446296 None:intergenic 60.0%
TGGCTAGGAGCTGATGCTGG+CGG + chr4_1:44446421-44446440 None:intergenic 60.0%
GTGTGGCTAGGAGCTGATGC+TGG + chr4_1:44446424-44446443 None:intergenic 60.0%
TGGGTTGCTGGAAAGGCTGG+GGG + chr4_1:44446753-44446772 None:intergenic 60.0%
GGGGCCTTGACCAACTCCAA+AGG + chr4_1:44446890-44446909 None:intergenic 60.0%
TGGTCAAGGCCCCCCAGAAT+TGG - chr4_1:44446897-44446916 Msa0549340:CDS 60.0%
TCAAGGCCCCCCAGAATTGG+AGG - chr4_1:44446900-44446919 Msa0549340:CDS 60.0%
ACACAAGGAGGACATGGGCC+AGG - chr4_1:44446997-44447016 Msa0549340:CDS 60.0%
! TGACGCAGGTTTAGAGCCCG+CGG + chr4_1:44447198-44447217 None:intergenic 60.0%
! GTCTAGGGGACTAGCAGACG+CGG + chr4_1:44448903-44448922 None:intergenic 60.0%
!! AGTGGGTTGTCGCGCGTCTA+GGG + chr4_1:44448953-44448972 None:intergenic 60.0%
CGCACGAACGCTAGAGACAG+AGG - chr4_1:44450424-44450443 Msa0549340:CDS 60.0%
CGGCCATCTCCTCCTGCACA+AGG - chr4_1:44444760-44444779 Msa0549340:intron 65.0%
GGAAGCCTAGCACCCGGTAC+AGG + chr4_1:44444799-44444818 None:intergenic 65.0%
! GGAGCTGATGCTGGCGGGTA+AGG + chr4_1:44446415-44446434 None:intergenic 65.0%
GGCTAGGAGCTGATGCTGGC+GGG + chr4_1:44446420-44446439 None:intergenic 65.0%
! GTGGGTTGTCGCGCGTCTAG+GGG + chr4_1:44448952-44448971 None:intergenic 65.0%
!! CAGTGGGTTGTCGCGCGTCT+AGG + chr4_1:44448954-44448973 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44442842 44450652 44442842 ID=Msa0549340;Name=Msa0549340
chr4_1 mRNA 44442842 44450652 44442842 ID=Msa0549340-mRNA-1;Parent=Msa0549340;Name=Msa0549340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.8|0.66|0.83|0.8|0.5|6|327|891
chr4_1 exon 44442842 44443156 44442842 ID=Msa0549340-mRNA-1:exon:11550;Parent=Msa0549340-mRNA-1
chr4_1 exon 44446450 44447884 44446450 ID=Msa0549340-mRNA-1:exon:11549;Parent=Msa0549340-mRNA-1
chr4_1 exon 44448409 44449286 44448409 ID=Msa0549340-mRNA-1:exon:11548;Parent=Msa0549340-mRNA-1
chr4_1 exon 44449500 44449580 44449500 ID=Msa0549340-mRNA-1:exon:11547;Parent=Msa0549340-mRNA-1
chr4_1 exon 44450211 44450456 44450211 ID=Msa0549340-mRNA-1:exon:11546;Parent=Msa0549340-mRNA-1
chr4_1 exon 44450605 44450652 44450605 ID=Msa0549340-mRNA-1:exon:11545;Parent=Msa0549340-mRNA-1
chr4_1 CDS 44450605 44450652 44450605 ID=Msa0549340-mRNA-1:cds;Parent=Msa0549340-mRNA-1
chr4_1 CDS 44450211 44450456 44450211 ID=Msa0549340-mRNA-1:cds;Parent=Msa0549340-mRNA-1
chr4_1 CDS 44449500 44449580 44449500 ID=Msa0549340-mRNA-1:cds;Parent=Msa0549340-mRNA-1
chr4_1 CDS 44448409 44449286 44448409 ID=Msa0549340-mRNA-1:cds;Parent=Msa0549340-mRNA-1
chr4_1 CDS 44446462 44447884 44446462 ID=Msa0549340-mRNA-1:cds;Parent=Msa0549340-mRNA-1
chr4_1 three_prime_UTR 44446450 44446461 44446450 ID=Msa0549340-mRNA-1:three_prime_utr;Parent=Msa0549340-mRNA-1
chr4_1 three_prime_UTR 44442842 44443156 44442842 ID=Msa0549340-mRNA-1:three_prime_utr;Parent=Msa0549340-mRNA-1
Gene Sequence

>Msa0549340

TTGACTGTTAAATCCAAAGTAGGAGCTGTCAAAATTAAGAAGTGGTTGGCAAAGACATGTAAACAGCTTTGGGTAGGTGGCATTAGCCCAGCTGTAACAAAGGAAGACTTGGAAGCTGACTTCCGTAAATTTGGTAAAGTTGAGGATTTCAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTAGATGATGCTATTCAGGCAATGAAAATTATGAATGGAAAACGTATCGGTGGGGAAAATATCCGTGTTGACTTCCTCCGATCAAATTATGCAAAAAGAGATCAAGGGCATGATTATGGGCAATTTCAAGGCAAAAGCTTTGGGCTTTCTGATTCTTATTCTGGACAAAAAAGGCCACTGAATTCACAACCTCTAATGAGGAGGAAGGGTGACGGTCAACCCAATAATATTTTGTGGATCGGTTATCCCCCCAATGTTCAGATCGATGAGCAAATGCTCCACAATGCCATGATCCTTTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGAAATTTTTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGGCGTGCAAAAGAGGGTCTTCAAGGGCGCCTTTTCAATGATCCTCACATAACAATTAATTATTCTAATGGTGACCAGGTACACGGCAAAGACTACCCTGGCTTTTATCCTGGGAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCATCCATATCGACCTGCACAAATGGATTCATTTGGTCATAATCGTCCTATGATTCCGAATAGTTTTCCTGGACAATTGCCAAATGGTGGTATTGTTGGTCCAAACATACCAGTGCGGCCTTTTGGTCCTAATGGTGGTCCTGAATCTGTTGTTTCTGGCCCTGAGTTTAACGAGAATAGTACACAACACAAGGGTCCAAACTGGAAACGGCCATCTCCTCCTGCACAAGGGTTGCTTTCTTCTCCTGTACCGGGTGCTAGGCTTCCTGCAAGATCGTCCTCTGGTGCATGGGATGTACTTGACATAAATCATATTCCAAGAGATTCTAAGCGGTCAAGGATAGATGGTGCATTACCTAATGATGATCCTTATGCAGGGAGGGGTATCCTTGGTTCAGCAAGCACGAGGATTACAGGTGGAGTACATGCTTCTGTCCAACCTGATCATATATGGCGCGGACTTATTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGCGTCCCTGTAGGGAAAGGGATCGGGACAGAGCTTCCTGAAGTTGTGGATTGCTCAGCTAGGACGGGATTGGATACACTTGCAGCACACTATGCTGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGTGAAAATGATTTTGGTTCATACACTGAATTCCTACGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGACAATACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAGATGTTCTGAAAGTCACCGGACCTGAACGTCTATATGGTGTCGTTCTCAAGTTTGCACCAGTACCGAGTGGTGTGCCCATGCACCAATCATCACATTTGCCTGTACCGTCAAATCAATATATGCAGCAGATGCCTCCTTCACAGGCTGAATATGATATGAATCCTGCAAAGGAGGAACAAGTTTTAGCAATGAATTACAACCGAATGTTGCACGAGGATTCTAAGCTTCCTGCTAAACAAGTATACCCACCTACAGGTGGGCCTTCTTCAGTTCAGCCTGCAGCTCCGGACTATGCTCTAAACACTGCTGCTTCTGGGTCTCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTTCTGCCCACAAATGCGCAGTCGCCTGCTATTGATGGTGCTAAGTCAGGTGCAGGCTCCTCAACTGTGAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCGGATCAATCCATTCATCCATCTCAGCAGTTTAGGAATATGTATAACAGTCAGAATGCTCATTATCAGCCTTACCCGCCAGCATCAGCTCCTAGCCACACTGCTCAAACGTTCTCTGGCAGTTCTCATATTCAAGACAATGCTGTTAGCCAGCAACAGCAAGGAGTTGTTTCATCTAGACTCGTGTCTAATTTTGTGACACCTACTCAAAGTGGACAGGTAGCTGCATCCCCCCATTTCAGTCATCAGTATCAGGCTGAAGTTCCCCCCAATACTCAGAAAGGCTTTCCAGGAAGTGATGTCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAATAACCACCATCCTTTCCAGCAACCTAATAATAACCCCCAGCATTTCCAGCAATCTAATAATAACCCCCAGCCTTTCCAGCAACCCAATAATTCTATTGCCTTATCTAGTCAAGTTAACAGTGCTAATCCTCAGCATCAGCCTGTCATGCAATATACCGCAGACCAAGTAAACTCAAACCCTCCCATCCAACAACATCCTGCCTTTGGAGTTGGTCAAGGCCCCCCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTGCAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACACAAGGAGGACATGGGCCAGGAGTTCAACAATAA
Protein sequence

>Msa0549340

LTVKSKVGAVKIKKWLAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKRIGGENIRVDFLRSNYAKRDQGHDYGQFQGKSFGLSDSYSGQKRPLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSFPSRNFSFVEFRSVDEARRAKEGLQGRLFNDPHITINYSNGDQVHGKDYPGFYPGSNGPRPDLFLNEHPYRPAQMDSFGHNRPMIPNSFPGQLPNGGIVGPNIPVRPFGPNGGPESVVSGPEFNENSTQHKGPNWKRPSPPAQGLLSSPVPGARLPARSSSGAWDVLDINHIPRDSKRSRIDGALPNDDPYAGRGILGSASTRITGGVHASVQPDHIWRGLIAKGGTPVCRARCVPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEIVFFLPDSENDFGSYTEFLRYLGAKNRAGVAKFDNTTLFLVPPSDFLTDVLKVTGPERLYGVVLKFAPVPSGVPMHQSSHLPVPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHEDSKLPAKQVYPPTGGPSSVQPAAPDYALNTAASGSQAGVALTPELIATLASFLPTNAQSPAIDGAKSGAGSSTVKPPFPPVAPNDGNQSQLWKQDHQIADQSIHPSQQFRNMYNSQNAHYQPYPPASAPSHTAQTFSGSSHIQDNAVSQQQQGVVSSRLVSNFVTPTQSGQVAASPHFSHQYQAEVPPNTQKGFPGSDVSVLYNSQAFQQPNNNHHPFQQPNNNPQHFQQSNNNPQPFQQPNNSIALSSQVNSANPQHQPVMQYTADQVNSNPPIQQHPAFGVGQGPPELEADKNQRYQSTLQFAANLLLQIQQQQTQGGHGPGVQQ*