AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1401070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401070 MtrunA17_Chr7g0274421 93.381 559 27 2 1 559 1 549 0.0 1058
Msa1401070 MtrunA17_Chr1g0190421 77.505 529 110 2 32 559 21 541 0.0 837
Msa1401070 MtrunA17_Chr5g0399211 32.700 263 159 8 33 283 47 303 1.65e-32 130
Msa1401070 MtrunA17_Chr4g0056181 30.916 262 163 8 34 283 35 290 2.91e-28 118
Msa1401070 MtrunA17_Chr3g0129911 34.969 163 105 1 37 198 305 467 2.66e-26 113
Msa1401070 MtrunA17_Chr1g0159301 34.731 167 104 4 35 198 311 475 9.46e-26 111
Msa1401070 MtrunA17_Chr7g0272921 35.714 168 101 2 38 198 270 437 5.96e-24 105
Msa1401070 MtrunA17_Chr1g0153481 31.707 164 111 1 35 197 299 462 1.82e-23 104
Msa1401070 MtrunA17_Chr1g0153471 31.098 164 112 1 35 197 295 458 4.24e-23 103
Msa1401070 MtrunA17_Chr1g0191821 34.337 166 104 2 38 198 267 432 4.82e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401070 AT5G18480.1 65.642 553 164 7 11 559 7 537 0.0 676
Msa1401070 AT1G77130.1 32.051 234 135 6 35 263 283 497 6.71e-28 118
Msa1401070 AT1G08990.1 41.358 162 92 3 38 197 279 439 8.17e-28 118
Msa1401070 AT3G18660.2 33.333 183 119 2 17 198 304 484 4.04e-27 116
Msa1401070 AT3G18660.3 33.333 183 119 2 17 198 299 479 4.48e-27 116
Msa1401070 AT3G18660.1 33.333 183 119 2 17 198 300 480 4.61e-27 116
Msa1401070 AT4G16600.1 31.801 261 161 9 34 282 56 311 9.65e-27 114
Msa1401070 AT2G35710.1 31.034 261 162 8 34 282 60 314 3.00e-26 112
Msa1401070 AT2G35710.4 31.034 261 162 8 34 282 60 314 4.35e-26 109
Msa1401070 AT1G54940.1 36.646 161 101 1 38 197 272 432 5.34e-24 106
Msa1401070 AT4G33330.1 33.537 164 108 1 35 197 299 462 2.64e-22 101
Msa1401070 AT4G33330.4 33.537 164 108 1 35 197 310 473 2.92e-22 101
Msa1401070 AT4G33330.2 33.537 164 108 1 35 197 299 462 3.42e-22 101
Msa1401070 AT4G33330.5 33.537 164 108 1 35 197 231 394 3.94e-22 100
Msa1401070 AT2G35710.2 32.178 202 125 6 87 282 11 206 3.81e-21 96.3
Msa1401070 AT4G33330.3 33.544 158 104 1 35 191 310 467 5.66e-21 96.7
Msa1401070 AT1G60450.1 25.556 270 137 8 35 263 18 264 1.18e-16 82.0
Msa1401070 AT1G60470.1 26.217 267 133 11 38 263 24 267 2.64e-14 74.7
Msa1401070 AT1G56600.1 24.823 282 140 9 27 263 12 266 9.41e-13 70.1
Msa1401070 AT1G09350.1 26.259 278 132 10 32 263 10 260 1.42e-12 69.7

Find 145 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGTTTATTGTATTATT+TGG 0.112274 tig0022499:+59558 Msa1401070:CDS
GAAAATAGTCATTAGGATTT+TGG 0.140955 tig0022499:-58758 None:intergenic
CGTTGGATATATTTATTTAA+AGG 0.166832 tig0022499:-56788 None:intergenic
CAAAACAACCATGTGTTTAT+TGG 0.172219 tig0022499:-57040 None:intergenic
CTCGTCACTTCCTGAGTCTT+TGG 0.182248 tig0022499:+59638 Msa1401070:CDS
GAGTCTTTGGATTATGATTC+TGG 0.187029 tig0022499:+59651 Msa1401070:CDS
GTGTTCGTCCTAAGAGATTT+TGG 0.201254 tig0022499:+57248 Msa1401070:CDS
GGTCTGGATTTCAACTCTTC+TGG 0.218207 tig0022499:-57750 None:intergenic
GTGGGGTTCTTCAGGATGTT+AGG 0.229561 tig0022499:+58697 Msa1401070:intron
GTTGATAGTCTCTCCATTTC+CGG 0.233884 tig0022499:-57777 None:intergenic
GTGCAAGGTTCCTACCTATT+TGG 0.237507 tig0022499:+59413 Msa1401070:CDS
TTCTGTCTGTTTCTGTTTAA+CGG 0.247943 tig0022499:+59443 Msa1401070:CDS
CAGCTTGGGGAGTCCCTTCC+TGG 0.263990 tig0022499:+58723 Msa1401070:CDS
ATACGGAGATGAATTCTTAT+TGG 0.271311 tig0022499:+56978 Msa1401070:CDS
CAATAAACACATGGTTGTTT+TGG 0.272587 tig0022499:+57041 Msa1401070:CDS
AACTCTTCTGGGGACAAGTT+TGG 0.282864 tig0022499:-57738 None:intergenic
GTTATCTTCATTTGGTTTAT+CGG 0.283666 tig0022499:+59583 Msa1401070:CDS
ATGAAACACAGGCTCCTATT+TGG 0.301950 tig0022499:-60652 None:intergenic
CTTCAATTCGAACCTTGTTT+AGG 0.314665 tig0022499:+56916 Msa1401070:CDS
ATTTGGAGGTTATCTTCATT+TGG 0.317707 tig0022499:+59575 Msa1401070:CDS
GCTATCCGGTCATTCCTAAA+AGG 0.323926 tig0022499:+60607 Msa1401070:CDS
GCTACATGGTACTATGGATT+AGG 0.324256 tig0022499:+59820 Msa1401070:CDS
CTCCATTTCCGGAACAGGTC+TGG 0.335358 tig0022499:-57766 None:intergenic
TGCAAGGTTCCTACCTATTT+GGG 0.337684 tig0022499:+59414 Msa1401070:CDS
TTGATCTAATCTTATAATAA+AGG 0.339906 tig0022499:-59000 None:intergenic
TACGGAGATGAATTCTTATT+GGG 0.349527 tig0022499:+56979 Msa1401070:CDS
TTCACAAGAAAATAGTCATT+AGG 0.353485 tig0022499:-58765 None:intergenic
TTATTGGGCGTTCGTGTTCT+CGG 0.354632 tig0022499:+56994 Msa1401070:CDS
CTTGGGACTGGTGGACATCT+TGG 0.360363 tig0022499:+58528 Msa1401070:CDS
CGCCAACTGATTCTACTGTT+TGG 0.368147 tig0022499:-56856 None:intergenic
GGTTAGGTTTGATGGTTGTC+GGG 0.371768 tig0022499:+60539 Msa1401070:intron
CTCTTAGGACGAACACGATT+AGG 0.374110 tig0022499:-57241 None:intergenic
CAGTCCACGGCATCACTTGC+CGG 0.376274 tig0022499:-59506 None:intergenic
ATCCAGACCTGTTCCGGAAA+TGG 0.383357 tig0022499:+57764 Msa1401070:CDS
GTTGAAATCCAGACCTGTTC+CGG 0.386303 tig0022499:+57758 Msa1401070:CDS
ACGGCTGCTGTGGTGTCTCT+TGG 0.387385 tig0022499:+59462 Msa1401070:CDS
CCACCAGTCCCAAGGCTTAA+GGG 0.387655 tig0022499:-58519 None:intergenic
AGGTTAGGTTTGATGGTTGT+CGG 0.394243 tig0022499:+60538 Msa1401070:intron
GTCTGGATTTCAACTCTTCT+GGG 0.395720 tig0022499:-57749 None:intergenic
TAGAACAACAATACAAATCT+AGG 0.397919 tig0022499:-60747 None:intergenic
ATTGGGAAAGTCAGAGTAAT+AGG 0.399496 tig0022499:-57700 None:intergenic
AGTCTCTCCATTTCCGGAAC+AGG 0.401528 tig0022499:-57771 None:intergenic
TAAACACCCCAAAATCTCTT+AGG 0.401974 tig0022499:-57256 None:intergenic
CTAGTTGAAGATGTAAATAA+AGG 0.402579 tig0022499:+60767 Msa1401070:three_prime_UTR
GACAGAAATACCGCCCAAAT+AGG 0.402864 tig0022499:-59427 None:intergenic
AGGATGTTAGGGAACAGCTT+GGG 0.405735 tig0022499:+58709 Msa1401070:intron
TCCACCAGTCCCAAGGCTTA+AGG 0.409126 tig0022499:-58520 None:intergenic
TTTCAGTCGTCTCTGACCTT+CGG 0.409977 tig0022499:-56711 None:intergenic
ATTACCTGCCAGACATCAAC+AGG 0.412860 tig0022499:-58560 None:intergenic
ATGTATCATTGTATTTGCTT+AGG 0.416458 tig0022499:+60801 Msa1401070:three_prime_UTR
CTACATGGTACTATGGATTA+GGG 0.418213 tig0022499:+59821 Msa1401070:CDS
TGGATTAGGGATGGCCTTGT+TGG 0.421428 tig0022499:+59834 Msa1401070:CDS
TGGGGTTCTTCAGGATGTTA+GGG 0.430964 tig0022499:+58698 Msa1401070:intron
ATTATCCCTCTTGTTTCCGT+TGG 0.431578 tig0022499:-56805 None:intergenic
ATATTTATTTAAAGGAAAGT+TGG 0.431720 tig0022499:-56780 None:intergenic
CTCTGACCTTCGGTCACCAC+TGG 0.435511 tig0022499:-56701 None:intergenic
AACCATGTGTTTATTGGATC+TGG 0.436495 tig0022499:-57034 None:intergenic
CATTCTGAGAGGTTGAATTC+CGG 0.440137 tig0022499:+57503 Msa1401070:CDS
TTATTCTTTCAAAATCTAGT+TGG 0.442653 tig0022499:+60846 Msa1401070:three_prime_UTR
CACTGGGACCCCTTAAGCCT+TGG 0.445458 tig0022499:+58510 Msa1401070:CDS
AGTCCACGGCATCACTTGCC+GGG 0.455569 tig0022499:-59505 None:intergenic
AGTGGGATATTGCTCCAAAT+AGG 0.456014 tig0022499:+60638 Msa1401070:CDS
GATGCTGCTACATGGTACTA+TGG 0.457667 tig0022499:+59814 Msa1401070:CDS
ATTGGATCTGGTGTCGCGTA+TGG 0.460416 tig0022499:-57022 None:intergenic
CGGCAAGTGATGCCGTGGAC+TGG 0.461514 tig0022499:+59507 Msa1401070:CDS
TCTTCATTTGGTTTATCGGT+GGG 0.463764 tig0022499:+59587 Msa1401070:CDS
CTGCTATAATTCACTTATGA+AGG 0.468846 tig0022499:+58827 Msa1401070:CDS
GATGTTGAGATAGTTGTATA+AGG 0.472611 tig0022499:-59034 None:intergenic
ATGTTTATTGTATTATTTGG+AGG 0.476336 tig0022499:+59561 Msa1401070:CDS
CAATTCGAACCTTGTTTAGG+AGG 0.477001 tig0022499:+56919 Msa1401070:CDS
CATATTAAGATTTGTTTCGA+TGG 0.477072 tig0022499:+59363 Msa1401070:intron
GCCGCCTCTTGTTCCAGGAA+GGG 0.477864 tig0022499:-58736 None:intergenic
CTTCTGAACATCTTGCTATC+CGG 0.479536 tig0022499:+60593 Msa1401070:CDS
GAGGTTGAATTCCGGAGTTA+TGG 0.484212 tig0022499:+57511 Msa1401070:CDS
ATCTTCATTTGGTTTATCGG+TGG 0.485026 tig0022499:+59586 Msa1401070:CDS
AGGAATCAATTCAATCCATC+AGG 0.487708 tig0022499:+59057 Msa1401070:CDS
GGGATGGCCTTGTTGGCCAT+TGG 0.489010 tig0022499:+59841 Msa1401070:CDS
GACCCCTTAAGCCTTGGGAC+TGG 0.492980 tig0022499:+58516 Msa1401070:CDS
ATAATAAGCGGTGATGTAAA+CGG 0.494535 tig0022499:+60690 Msa1401070:three_prime_UTR
ATAATAAAGCACAGAATGGT+AGG 0.502328 tig0022499:-58800 None:intergenic
TTGCAGAATCGAGAGTACTT+TGG 0.502931 tig0022499:+58938 Msa1401070:intron
GAGATAGTTGTATAAGGAAG+TGG 0.503037 tig0022499:-59028 None:intergenic
GGCCGCCTCTTGTTCCAGGA+AGG 0.503271 tig0022499:-58737 None:intergenic
ACTGGGACCCCTTAAGCCTT+GGG 0.507201 tig0022499:+58511 Msa1401070:CDS
CCCTTAAGCCTTGGGACTGG+TGG 0.507393 tig0022499:+58519 Msa1401070:CDS
AGGCACAATTCTGTCGGGTA+AGG 0.509918 tig0022499:-60869 None:intergenic
GCTCCCTATGTGATCAAGTC+AGG 0.510268 tig0022499:+58975 Msa1401070:CDS
TATACAACTATCTCAACATC+AGG 0.514583 tig0022499:+59037 Msa1401070:CDS
TATTATAAGATTAGATCAAG+TGG 0.524639 tig0022499:+59004 Msa1401070:CDS
CTTCATTTGGTTTATCGGTG+GGG 0.530069 tig0022499:+59588 Msa1401070:CDS
AGGACGAACACGATTAGGAT+TGG 0.530654 tig0022499:-57236 None:intergenic
CCTCGATGCCGATACTATTG+TGG 0.530695 tig0022499:+57427 Msa1401070:CDS
CTCGAATGGTTCTCAGTGCA+AGG 0.544103 tig0022499:+59398 Msa1401070:CDS
GTGCCTGACTTGATCACATA+GGG 0.545198 tig0022499:-58978 None:intergenic
TTCCCCGGCAAGTGATGCCG+TGG 0.546088 tig0022499:+59502 Msa1401070:CDS
GTTAGGTTTGATGGTTGTCG+GGG 0.547123 tig0022499:+60540 Msa1401070:CDS
GAAACCTGTTGATGTCTGGC+AGG 0.547142 tig0022499:+58556 Msa1401070:CDS
CAGGATGTTAGGGAACAGCT+TGG 0.547351 tig0022499:+58708 Msa1401070:intron
TAGAATAATAAAGCACAGAA+TGG 0.551207 tig0022499:-58804 None:intergenic
TAGCTCTCTTGATTGTTCCC+CGG 0.552382 tig0022499:+59487 Msa1401070:CDS
TGGAGCACCAATGGCCAACA+AGG 0.554201 tig0022499:-59848 None:intergenic
CTTTAAATAAATATATCCAA+CGG 0.558224 tig0022499:+56789 Msa1401070:five_prime_UTR
AGGCAAAGATGGAGCACCAA+TGG 0.558429 tig0022499:-59857 None:intergenic
ACATTGTATAATGCAGATGT+TGG 0.559822 tig0022499:+57798 Msa1401070:CDS
GGATGTTAGGGAACAGCTTG+GGG 0.560129 tig0022499:+58710 Msa1401070:intron
CGTGTGATTCACTATACACT+GGG 0.562412 tig0022499:+58494 Msa1401070:CDS
TCCCTTCCTGGAACAAGAGG+CGG 0.563395 tig0022499:+58735 Msa1401070:CDS
TCTTTACATGCTCGCTAACA+AGG 0.564106 tig0022499:+57821 Msa1401070:CDS
GTGTGTTGCAGGCTGATGGT+TGG 0.566359 tig0022499:+57188 Msa1401070:intron
CCGTGTGATTCACTATACAC+TGG 0.569851 tig0022499:+58493 Msa1401070:CDS
GAATCATAATCCAAAGACTC+AGG 0.570217 tig0022499:-59648 None:intergenic
CACCAGTCCCAAGGCTTAAG+GGG 0.573084 tig0022499:-58518 None:intergenic
GGTGTCAAGCAGCTCTCGAA+TGG 0.582811 tig0022499:+59384 Msa1401070:CDS
GAGTCCCTTCCTGGAACAAG+AGG 0.585313 tig0022499:+58732 Msa1401070:CDS
CATCATGTGATGCTGCTACA+TGG 0.586772 tig0022499:+59806 Msa1401070:CDS
GAAATACCGCCCAAATAGGT+AGG 0.586979 tig0022499:-59423 None:intergenic
TCCTAAAAGGACTTGATGAG+TGG 0.590262 tig0022499:+60620 Msa1401070:CDS
CCTAAAAGGACTTGATGAGT+GGG 0.598813 tig0022499:+60621 Msa1401070:CDS
GTTGAATTCCGGAGTTATGG+TGG 0.600129 tig0022499:+57514 Msa1401070:CDS
TATATCCAACGGAAACAAGA+GGG 0.602807 tig0022499:+56800 Msa1401070:five_prime_UTR
TTGTAAGATCCTCCTAAACA+AGG 0.608903 tig0022499:-56928 None:intergenic
ATCAAAAGCAAACCAGTCCA+CGG 0.610095 tig0022499:-59519 None:intergenic
AGATGCACGCACGCAGCCAG+TGG 0.613650 tig0022499:+56685 Msa1401070:five_prime_UTR
TTTCTGTTTAACGGCTGCTG+TGG 0.614224 tig0022499:+59452 Msa1401070:CDS
CAAGATGTCCACCAGTCCCA+AGG 0.614633 tig0022499:-58527 None:intergenic
AAAACTACTAAATCTTACAC+CGG 0.615106 tig0022499:+57581 Msa1401070:CDS
ATATATCCAACGGAAACAAG+AGG 0.615931 tig0022499:+56799 Msa1401070:five_prime_UTR
AAAATCAACATATGAAACAC+AGG 0.615989 tig0022499:-60663 None:intergenic
GGTGCCTGACTTGATCACAT+AGG 0.616621 tig0022499:-58979 None:intergenic
TCTGGATTTCAACTCTTCTG+GGG 0.623762 tig0022499:-57748 None:intergenic
CACCAGATCCAATAAACACA+TGG 0.629948 tig0022499:+57032 Msa1401070:CDS
ACGCAGCCAGTGGTGACCGA+AGG 0.632731 tig0022499:+56695 Msa1401070:five_prime_UTR
ATGGTACTATGGATTAGGGA+TGG 0.639457 tig0022499:+59825 Msa1401070:CDS
TGGCTCGACCACCATAACTC+CGG 0.646787 tig0022499:-57522 None:intergenic
AACCAAACAGTAGAATCAGT+TGG 0.648274 tig0022499:+56854 Msa1401070:CDS
AAGGTTCCTACCTATTTGGG+CGG 0.652522 tig0022499:+59417 Msa1401070:CDS
TTAGGTTTGATGGTTGTCGG+GGG 0.659292 tig0022499:+60541 Msa1401070:CDS
TTATCGGTGGGGAAAACATG+TGG 0.662735 tig0022499:+59599 Msa1401070:CDS
GTCCACGGCATCACTTGCCG+GGG 0.666206 tig0022499:-59504 None:intergenic
ACTACTAAATCTTACACCGG+AGG 0.674410 tig0022499:+57584 Msa1401070:CDS
CAAAGACTCAGGAAGTGACG+AGG 0.676512 tig0022499:-59637 None:intergenic
CCACAATAGTATCGGCATCG+AGG 0.695118 tig0022499:-57427 None:intergenic
CCAGTGTATAGTGAATCACA+CGG 0.701291 tig0022499:-58493 None:intergenic
CTAATTTGAAGCATTCTGAG+AGG 0.701754 tig0022499:+57492 Msa1401070:CDS
ATAAGCGGTGATGTAAACGG+TGG 0.756884 tig0022499:+60693 Msa1401070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTCTTTTTTTAATTAATTAA+AGG + tig0022499:57127-57146 Msa1401070:intron 10.0%
!! GTTAAAATTACAAAAATAAA+TGG - tig0022499:60518-60537 None:intergenic 10.0%
!!! TTTATTTTTGTAATTTTAAC+AGG + tig0022499:60518-60537 Msa1401070:intron 10.0%
!! ATATTTATTTAAAGGAAAGT+TGG - tig0022499:56783-56802 None:intergenic 15.0%
!! CTTTAAATAAATATATCCAA+CGG + tig0022499:56789-56808 Msa1401070:five_prime_UTR 15.0%
!!! TTAACTGTTTGATTTAATTA+TGG + tig0022499:57160-57179 Msa1401070:intron 15.0%
!!! TTGTTATTAATGTTGTAAAA+AGG + tig0022499:58597-58616 Msa1401070:intron 15.0%
!! TTGATCTAATCTTATAATAA+AGG - tig0022499:59003-59022 None:intergenic 15.0%
!! ACAATGTTTATTGTATTATT+TGG + tig0022499:59558-59577 Msa1401070:CDS 15.0%
!! TTAATTTATACTGTATTTAC+AGG + tig0022499:59766-59785 Msa1401070:intron 15.0%
!! TATATCGAAATTATAAAAGT+TGG - tig0022499:60154-60173 None:intergenic 15.0%
!!! TTGATTTTTGTAATAATAAG+CGG + tig0022499:60678-60697 Msa1401070:exon 15.0%
!! CGTTGGATATATTTATTTAA+AGG - tig0022499:56791-56810 None:intergenic 20.0%
!!! ATTGTTACCTTTTTTGTAAT+TGG - tig0022499:57308-57327 None:intergenic 20.0%
!! TACAAAAAAGGTAACAATTA+AGG + tig0022499:57310-57329 Msa1401070:intron 20.0%
!!! ATTTTTAACCACAATAGTAT+CGG - tig0022499:57438-57457 None:intergenic 20.0%
!!! ATTTTTTGAGATTGTTAGTT+TGG + tig0022499:57615-57634 Msa1401070:intron 20.0%
!!! TTTTTTGAGATTGTTAGTTT+GGG + tig0022499:57616-57635 Msa1401070:intron 20.0%
!! TAAGCATATAAATCATAATG+AGG - tig0022499:57944-57963 None:intergenic 20.0%
!! TAATAGTTAGAATACAGTAT+GGG + tig0022499:58146-58165 Msa1401070:intron 20.0%
!! AATGAAATAAAAATGCATGA+GGG - tig0022499:58306-58325 None:intergenic 20.0%
!! TAATGAAATAAAAATGCATG+AGG - tig0022499:58307-58326 None:intergenic 20.0%
!! AAATATATGTATATGTCTCT+CGG + tig0022499:58387-58406 Msa1401070:intron 20.0%
!! TTAGATAATCTGAATTGAAA+AGG - tig0022499:58417-58436 None:intergenic 20.0%
!! TATTATAAGATTAGATCAAG+TGG + tig0022499:59004-59023 Msa1401070:CDS 20.0%
!! ATGTTTATTGTATTATTTGG+AGG + tig0022499:59561-59580 Msa1401070:CDS 20.0%
!!! AAATACTTCAAACCTTTTTT+TGG + tig0022499:59978-59997 Msa1401070:intron 20.0%
!!! AATACTTCAAACCTTTTTTT+GGG + tig0022499:59979-59998 Msa1401070:intron 20.0%
!!! CGATATATTACAGTTAATTT+TGG + tig0022499:60167-60186 Msa1401070:intron 20.0%
!!! TATATTACAGTTAATTTTGG+TGG + tig0022499:60170-60189 Msa1401070:intron 20.0%
!!! TTGTACTTTTTAATAAGTTG+TGG + tig0022499:60253-60272 Msa1401070:intron 20.0%
!!! TTTTGTAATTTTAACAGGTT+AGG + tig0022499:60523-60542 Msa1401070:intron 20.0%
!! TTATTCTTTCAAAATCTAGT+TGG + tig0022499:60846-60865 Msa1401070:three_prime_UTR 20.0%
! AAGAAAGAAAAATACTGACA+CGG - tig0022499:57104-57123 None:intergenic 25.0%
! AACATGACCAATTACAAAAA+AGG + tig0022499:57298-57317 Msa1401070:CDS 25.0%
!!! GTTTTCTTCTTGTTGATTAT+TGG + tig0022499:57368-57387 Msa1401070:intron 25.0%
!!! TTGATGATCTTTTCAAATGT+CGG + tig0022499:57459-57478 Msa1401070:CDS 25.0%
! AAAACTACTAAATCTTACAC+CGG + tig0022499:57581-57600 Msa1401070:CDS 25.0%
!!! CAAAAAATTGTTTTTACCTC+CGG - tig0022499:57603-57622 None:intergenic 25.0%
! GTAATAGTTAGAATACAGTA+TGG + tig0022499:58145-58164 Msa1401070:intron 25.0%
! ATCTATATCAGTATTCTCAA+AGG + tig0022499:58178-58197 Msa1401070:intron 25.0%
! AGTATTCTCAAAGGATTTAT+CGG + tig0022499:58187-58206 Msa1401070:intron 25.0%
!!! TATCTCAGTGTCTTATTTTT+AGG + tig0022499:58246-58265 Msa1401070:intron 25.0%
!!! ATCTCAGTGTCTTATTTTTA+GGG + tig0022499:58247-58266 Msa1401070:intron 25.0%
! ATGAAATAAAAATGCATGAG+GGG - tig0022499:58305-58324 None:intergenic 25.0%
! CATTAATAACAAACCAAAAG+AGG - tig0022499:58589-58608 None:intergenic 25.0%
!! TTTTGTCACAAGATTTAACT+GGG - tig0022499:58649-58668 None:intergenic 25.0%
!! GAAAATAGTCATTAGGATTT+TGG - tig0022499:58761-58780 None:intergenic 25.0%
! TTCACAAGAAAATAGTCATT+AGG - tig0022499:58768-58787 None:intergenic 25.0%
! TAGAATAATAAAGCACAGAA+TGG - tig0022499:58807-58826 None:intergenic 25.0%
!! CATATTAAGATTTGTTTCGA+TGG + tig0022499:59363-59382 Msa1401070:intron 25.0%
!! GTTATCTTCATTTGGTTTAT+CGG + tig0022499:59583-59602 Msa1401070:CDS 25.0%
!!! ATACTTCAAACCTTTTTTTG+GGG + tig0022499:59980-59999 Msa1401070:intron 25.0%
! TTGTGATTCAACATTTAAAG+AGG + tig0022499:60100-60119 Msa1401070:intron 25.0%
! AAAATCAACATATGAAACAC+AGG - tig0022499:60666-60685 None:intergenic 25.0%
! TAGAACAACAATACAAATCT+AGG - tig0022499:60750-60769 None:intergenic 25.0%
! CTAGTTGAAGATGTAAATAA+AGG + tig0022499:60767-60786 Msa1401070:three_prime_UTR 25.0%
! ATGTATCATTGTATTTGCTT+AGG + tig0022499:60801-60820 Msa1401070:three_prime_UTR 25.0%
! GCATACGTTACTCTTTTATA+CGG + tig0022499:56961-56980 Msa1401070:CDS 30.0%
ATACGGAGATGAATTCTTAT+TGG + tig0022499:56978-56997 Msa1401070:CDS 30.0%
TACGGAGATGAATTCTTATT+GGG + tig0022499:56979-56998 Msa1401070:CDS 30.0%
CAAAACAACCATGTGTTTAT+TGG - tig0022499:57043-57062 None:intergenic 30.0%
! CAATAAACACATGGTTGTTT+TGG + tig0022499:57041-57060 Msa1401070:CDS 30.0%
! TCTTCTTGTTGATTATTGGT+TGG + tig0022499:57372-57391 Msa1401070:intron 30.0%
TCGTTAAAAAGAGTTTCAGA+TGG - tig0022499:57545-57564 None:intergenic 30.0%
! TGAAACTCTTTTTAACGACA+TGG + tig0022499:57547-57566 Msa1401070:CDS 30.0%
ACATTGTATAATGCAGATGT+TGG + tig0022499:57798-57817 Msa1401070:CDS 30.0%
TTAAGTAATTAGAGTCACTG+AGG + tig0022499:57891-57910 Msa1401070:intron 30.0%
GTTTAGATAGAATGTATGCT+AGG + tig0022499:57974-57993 Msa1401070:intron 30.0%
ATTTGCCTAATGGCTAAAAA+TGG + tig0022499:58051-58070 Msa1401070:intron 30.0%
CTAACTATTACAGACAATAC+CGG - tig0022499:58136-58155 None:intergenic 30.0%
! CTTTTGTCACAAGATTTAAC+TGG - tig0022499:58650-58669 None:intergenic 30.0%
ATAATAAAGCACAGAATGGT+AGG - tig0022499:58803-58822 None:intergenic 30.0%
CTGCTATAATTCACTTATGA+AGG + tig0022499:58827-58846 Msa1401070:CDS 30.0%
ATGTGCTTAATGCTTGAAAT+TGG - tig0022499:58884-58903 None:intergenic 30.0%
ATTTCAAGCATTAAGCACAT+AGG + tig0022499:58884-58903 Msa1401070:intron 30.0%
TTTCAAGCATTAAGCACATA+GGG + tig0022499:58885-58904 Msa1401070:intron 30.0%
!! TACTTTGGTTCATTTTGTAG+AGG + tig0022499:58953-58972 Msa1401070:CDS 30.0%
GATGTTGAGATAGTTGTATA+AGG - tig0022499:59037-59056 None:intergenic 30.0%
TATACAACTATCTCAACATC+AGG + tig0022499:59037-59056 Msa1401070:CDS 30.0%
TCTACCTCATCAAAATCAAA+TGG - tig0022499:59148-59167 None:intergenic 30.0%
ATGTCATGGATTCAAATAAC+AGG + tig0022499:59292-59311 Msa1401070:intron 30.0%
!! TTCTGTCTGTTTCTGTTTAA+CGG + tig0022499:59443-59462 Msa1401070:CDS 30.0%
!! GTTTGCTTTTGATGTATGAA+TGG + tig0022499:59529-59548 Msa1401070:CDS 30.0%
ATTTGGAGGTTATCTTCATT+TGG + tig0022499:59575-59594 Msa1401070:CDS 30.0%
!!! CAAGAGTAAAGCTTATTTTG+TGG + tig0022499:59688-59707 Msa1401070:intron 30.0%
!!! GAATAACTGCCTTGTTTTTA+AGG + tig0022499:59890-59909 Msa1401070:CDS 30.0%
AATTCGCGTTCTAATGTATT+AGG + tig0022499:59914-59933 Msa1401070:intron 30.0%
! GAAATTTTCACCCCAAAAAA+AGG - tig0022499:59993-60012 None:intergenic 30.0%
AAAACAGTACATGTGTATAG+AGG - tig0022499:60196-60215 None:intergenic 30.0%
! CTATACACATGTACTGTTTT+CGG + tig0022499:60196-60215 Msa1401070:intron 30.0%
CTTTCACATTACATCTCTTA+GGG - tig0022499:60323-60342 None:intergenic 30.0%
! TTTTAACAGGTTAGGTTTGA+TGG + tig0022499:60531-60550 Msa1401070:intron 30.0%
ATAATAAGCGGTGATGTAAA+CGG + tig0022499:60690-60709 Msa1401070:three_prime_UTR 30.0%
ATATATCCAACGGAAACAAG+AGG + tig0022499:56799-56818 Msa1401070:five_prime_UTR 35.0%
TATATCCAACGGAAACAAGA+GGG + tig0022499:56800-56819 Msa1401070:five_prime_UTR 35.0%
AACCAAACAGTAGAATCAGT+TGG + tig0022499:56854-56873 Msa1401070:CDS 35.0%
! CTTCAATTCGAACCTTGTTT+AGG + tig0022499:56916-56935 Msa1401070:CDS 35.0%
TTGTAAGATCCTCCTAAACA+AGG - tig0022499:56931-56950 None:intergenic 35.0%
AACCATGTGTTTATTGGATC+TGG - tig0022499:57037-57056 None:intergenic 35.0%
! TTATGGTTTTTGTGTGTTGC+AGG + tig0022499:57177-57196 Msa1401070:intron 35.0%
! TGTTCGTCCTAAGAGATTTT+GGG + tig0022499:57249-57268 Msa1401070:CDS 35.0%
TAAACACCCCAAAATCTCTT+AGG - tig0022499:57259-57278 None:intergenic 35.0%
! CTAATTTGAAGCATTCTGAG+AGG + tig0022499:57492-57511 Msa1401070:CDS 35.0%
AAGAAACACAGTTGAAGACA+AGG - tig0022499:57649-57668 None:intergenic 35.0%
ATTGGGAAAGTCAGAGTAAT+AGG - tig0022499:57703-57722 None:intergenic 35.0%
ATTACTTAAGTTACGACACG+AGG - tig0022499:57880-57899 None:intergenic 35.0%
CATTAGGCAAATGTAACTGT+GGG - tig0022499:58043-58062 None:intergenic 35.0%
!!! CAATGCCATTTTTAGCCATT+AGG - tig0022499:58059-58078 None:intergenic 35.0%
ATTCTCAAAGGATTTATCGG+TGG + tig0022499:58190-58209 Msa1401070:intron 35.0%
!!! TTATTTTTAGGGCACCTTGT+CGG + tig0022499:58258-58277 Msa1401070:intron 35.0%
!!! TTTTGAAACCTGTTGATGTC+TGG + tig0022499:58552-58571 Msa1401070:CDS 35.0%
TGACGTATTTCTTCTTACCT+TGG + tig0022499:58675-58694 Msa1401070:intron 35.0%
GTATTTCTTCTTACCTTGGT+GGG + tig0022499:58679-58698 Msa1401070:intron 35.0%
TATTTCTTCTTACCTTGGTG+GGG + tig0022499:58680-58699 Msa1401070:intron 35.0%
GAGATAGTTGTATAAGGAAG+TGG - tig0022499:59031-59050 None:intergenic 35.0%
AGGAATCAATTCAATCCATC+AGG + tig0022499:59057-59076 Msa1401070:CDS 35.0%
ATCAATTCAATCCATCAGGT+TGG + tig0022499:59061-59080 Msa1401070:intron 35.0%
! GATGATCCAAATCTAAAACC+AGG - tig0022499:59099-59118 None:intergenic 35.0%
GATTTGGATCATCTCATTTG+AGG + tig0022499:59106-59125 Msa1401070:intron 35.0%
CAAATGGCTAGATCATATGA+AGG - tig0022499:59132-59151 None:intergenic 35.0%
!! CTAGCCATTTGATTTTGATG+AGG + tig0022499:59141-59160 Msa1401070:intron 35.0%
ACTACTATCATCAAATGACC+TGG + tig0022499:59258-59277 Msa1401070:intron 35.0%
! ATCTTCATTTGGTTTATCGG+TGG + tig0022499:59586-59605 Msa1401070:CDS 35.0%
! TCTTCATTTGGTTTATCGGT+GGG + tig0022499:59587-59606 Msa1401070:CDS 35.0%
GAATCATAATCCAAAGACTC+AGG - tig0022499:59651-59670 None:intergenic 35.0%
GAGTCTTTGGATTATGATTC+TGG + tig0022499:59651-59670 Msa1401070:CDS 35.0%
! CTACATGGTACTATGGATTA+GGG + tig0022499:59821-59840 Msa1401070:CDS 35.0%
GCAGTTATTCCAAAAAGACA+AGG - tig0022499:59880-59899 None:intergenic 35.0%
CGCGAATTACCTTAAAAACA+AGG - tig0022499:59902-59921 None:intergenic 35.0%
TCTTAGGGAATTCAAATGAG+TGG - tig0022499:60308-60327 None:intergenic 35.0%
CCTTTCACATTACATCTCTT+AGG - tig0022499:60324-60343 None:intergenic 35.0%
CCTAAGAGATGTAATGTGAA+AGG + tig0022499:60321-60340 Msa1401070:intron 35.0%
!!! GAAAGGTTTTAAGCTTGCAT+TGG + tig0022499:60338-60357 Msa1401070:intron 35.0%
!! GTTTTAAGCTTGCATTGGAA+AGG + tig0022499:60343-60362 Msa1401070:intron 35.0%
AGGCTAAAAATCAGTTTGAG+TGG + tig0022499:60363-60382 Msa1401070:intron 35.0%
AGAATTGAGAGAAAAGGGAA+AGG - tig0022499:60394-60413 None:intergenic 35.0%
CACTGAGAATTGAGAGAAAA+GGG - tig0022499:60399-60418 None:intergenic 35.0%
ACACTGAGAATTGAGAGAAA+AGG - tig0022499:60400-60419 None:intergenic 35.0%
! CTTTGCATCAGAGATTTGTT+TGG + tig0022499:60480-60499 Msa1401070:intron 35.0%
! ATTATCCCTCTTGTTTCCGT+TGG - tig0022499:56808-56827 None:intergenic 40.0%
! CAATTCGAACCTTGTTTAGG+AGG + tig0022499:56919-56938 Msa1401070:CDS 40.0%
CACCAGATCCAATAAACACA+TGG + tig0022499:57032-57051 Msa1401070:CDS 40.0%
!!! ATGGTTGTTTTGGTCTCTGA+TGG + tig0022499:57051-57070 Msa1401070:CDS 40.0%
!!! GAGAAGGTTTTTGGCGAAAT+TGG - tig0022499:57082-57101 None:intergenic 40.0%
GAAAAATACTGACACGGAGA+AGG - tig0022499:57098-57117 None:intergenic 40.0%
! GTGTTCGTCCTAAGAGATTT+TGG + tig0022499:57248-57267 Msa1401070:CDS 40.0%
! GTTCGTCCTAAGAGATTTTG+GGG + tig0022499:57250-57269 Msa1401070:CDS 40.0%
! CATTCTGAGAGGTTGAATTC+CGG + tig0022499:57503-57522 Msa1401070:CDS 40.0%
ACTACTAAATCTTACACCGG+AGG + tig0022499:57584-57603 Msa1401070:CDS 40.0%
! ACTGTGTTTCTTCCTTTTGC+AGG + tig0022499:57657-57676 Msa1401070:intron 40.0%
GGATCAAAAACACGTGCATT+GGG - tig0022499:57720-57739 None:intergenic 40.0%
TGGATCAAAAACACGTGCAT+TGG - tig0022499:57721-57740 None:intergenic 40.0%
TCTGGATTTCAACTCTTCTG+GGG - tig0022499:57751-57770 None:intergenic 40.0%
GTCTGGATTTCAACTCTTCT+GGG - tig0022499:57752-57771 None:intergenic 40.0%
!! GTTGATAGTCTCTCCATTTC+CGG - tig0022499:57780-57799 None:intergenic 40.0%
TCTTTACATGCTCGCTAACA+AGG + tig0022499:57821-57840 Msa1401070:CDS 40.0%
GGGATTCTCTCAAACAAGTT+AGG - tig0022499:58023-58042 None:intergenic 40.0%
CCATTAGGCAAATGTAACTG+TGG - tig0022499:58044-58063 None:intergenic 40.0%
CCACAGTTACATTTGCCTAA+TGG + tig0022499:58041-58060 Msa1401070:intron 40.0%
GTGTTCTATGTCCTATTGAC+CGG + tig0022499:58114-58133 Msa1401070:intron 40.0%
TACAGACAATACCGGTCAAT+AGG - tig0022499:58128-58147 None:intergenic 40.0%
CACTGAGATAAAATCTCCAC+AGG - tig0022499:58236-58255 None:intergenic 40.0%
CCAGTGTATAGTGAATCACA+CGG - tig0022499:58496-58515 None:intergenic 40.0%
CGTGTGATTCACTATACACT+GGG + tig0022499:58494-58513 Msa1401070:CDS 40.0%
! GGCAGGTAATTATCCTCTTT+TGG + tig0022499:58573-58592 Msa1401070:intron 40.0%
CGTATTTCTTCTTACCTTGG+TGG + tig0022499:58678-58697 Msa1401070:intron 40.0%
ATAGGGCTTCGAATAAGTCT+TGG + tig0022499:58902-58921 Msa1401070:intron 40.0%
!! TTGCAGAATCGAGAGTACTT+TGG + tig0022499:58938-58957 Msa1401070:intron 40.0%
!!! CAGTCTCCTGGTTTTAGATT+TGG + tig0022499:59090-59109 Msa1401070:intron 40.0%
CAAACACAACGCCTTGTATA+AGG + tig0022499:59168-59187 Msa1401070:intron 40.0%
!! ATTTTGGGAGGCCTTATACA+AGG - tig0022499:59182-59201 None:intergenic 40.0%
CTCCCAAAATCTCTTGTACA+GGG + tig0022499:59192-59211 Msa1401070:intron 40.0%
TCCTGTACATGAGAAGAACA+CGG - tig0022499:59220-59239 None:intergenic 40.0%
ATGACATGACAACATTGACC+AGG - tig0022499:59279-59298 None:intergenic 40.0%
TGGTCAATGTTGTCATGTCA+TGG + tig0022499:59278-59297 Msa1401070:intron 40.0%
AAGTATGCAAGTCCAACTAG+AGG - tig0022499:59326-59345 None:intergenic 40.0%
TGCAAGGTTCCTACCTATTT+GGG + tig0022499:59414-59433 Msa1401070:CDS 40.0%
ATCAAAAGCAAACCAGTCCA+CGG - tig0022499:59522-59541 None:intergenic 40.0%
! CTTCATTTGGTTTATCGGTG+GGG + tig0022499:59588-59607 Msa1401070:CDS 40.0%
GCTACATGGTACTATGGATT+AGG + tig0022499:59820-59839 Msa1401070:CDS 40.0%
!! ATGGTACTATGGATTAGGGA+TGG + tig0022499:59825-59844 Msa1401070:CDS 40.0%
CCAAAAAGACAAGGCAAAGA+TGG - tig0022499:59871-59890 None:intergenic 40.0%
! CCATCTTTGCCTTGTCTTTT+TGG + tig0022499:59868-59887 Msa1401070:CDS 40.0%
GTCTACTCTGATGTGATTCT+AGG - tig0022499:60430-60449 None:intergenic 40.0%
! AGGTTAGGTTTGATGGTTGT+CGG + tig0022499:60538-60557 Msa1401070:intron 40.0%
! CTTCTGAACATCTTGCTATC+CGG + tig0022499:60593-60612 Msa1401070:CDS 40.0%
!! CAAGTCCTTTTAGGAATGAC+CGG - tig0022499:60615-60634 None:intergenic 40.0%
TCCTAAAAGGACTTGATGAG+TGG + tig0022499:60620-60639 Msa1401070:CDS 40.0%
CCTAAAAGGACTTGATGAGT+GGG + tig0022499:60621-60640 Msa1401070:CDS 40.0%
AGTGGGATATTGCTCCAAAT+AGG + tig0022499:60638-60657 Msa1401070:CDS 40.0%
ATGAAACACAGGCTCCTATT+TGG - tig0022499:60655-60674 None:intergenic 40.0%
TTTCAGTCGTCTCTGACCTT+CGG - tig0022499:56714-56733 None:intergenic 45.0%
! CGCCAACTGATTCTACTGTT+TGG - tig0022499:56859-56878 None:intergenic 45.0%
TTATTGGGCGTTCGTGTTCT+CGG + tig0022499:56994-57013 Msa1401070:CDS 45.0%
! ACTGACACGGAGAAGGTTTT+TGG - tig0022499:57091-57110 None:intergenic 45.0%
! TTTTGTGTGTTGCAGGCTGA+TGG + tig0022499:57184-57203 Msa1401070:intron 45.0%
AGGACGAACACGATTAGGAT+TGG - tig0022499:57239-57258 None:intergenic 45.0%
CTCTTAGGACGAACACGATT+AGG - tig0022499:57244-57263 None:intergenic 45.0%
GAGGTTGAATTCCGGAGTTA+TGG + tig0022499:57511-57530 Msa1401070:CDS 45.0%
GTTGAATTCCGGAGTTATGG+TGG + tig0022499:57514-57533 Msa1401070:CDS 45.0%
! TCTTCCTTTTGCAGGAGATC+AGG + tig0022499:57665-57684 Msa1401070:intron 45.0%
! CTTCCTTTTGCAGGAGATCA+GGG + tig0022499:57666-57685 Msa1401070:intron 45.0%
AATCCCTGATCTCCTGCAAA+AGG - tig0022499:57672-57691 None:intergenic 45.0%
! AACTCTTCTGGGGACAAGTT+TGG - tig0022499:57741-57760 None:intergenic 45.0%
GGTCTGGATTTCAACTCTTC+TGG - tig0022499:57753-57772 None:intergenic 45.0%
GTTGAAATCCAGACCTGTTC+CGG + tig0022499:57758-57777 Msa1401070:CDS 45.0%
ACATGCTCGCTAACAAGGTA+CGG + tig0022499:57826-57845 Msa1401070:intron 45.0%
GCTAACAAGGTACGGAGTAT+AGG + tig0022499:57834-57853 Msa1401070:intron 45.0%
!! TACGGAGTATAGGTACTGAG+AGG + tig0022499:57844-57863 Msa1401070:intron 45.0%
!! GAGTATAGGTACTGAGAGGA+TGG + tig0022499:57848-57867 Msa1401070:intron 45.0%
GTTCATGCTGATCTATCCAG+TGG + tig0022499:58450-58469 Msa1401070:intron 45.0%
ATGCTGATCTATCCAGTGGA+TGG + tig0022499:58454-58473 Msa1401070:intron 45.0%
CTTTCTCATCTACCATCCAC+TGG - tig0022499:58469-58488 None:intergenic 45.0%
CCGTGTGATTCACTATACAC+TGG + tig0022499:58493-58512 Msa1401070:CDS 45.0%
ATTACCTGCCAGACATCAAC+AGG - tig0022499:58563-58582 None:intergenic 45.0%
CTGGGTAGACATGATTGCTT+CGG - tig0022499:58631-58650 None:intergenic 45.0%
TGGGGTTCTTCAGGATGTTA+GGG + tig0022499:58698-58717 Msa1401070:intron 45.0%
AGGATGTTAGGGAACAGCTT+GGG + tig0022499:58709-58728 Msa1401070:intron 45.0%
! GTGCCTGACTTGATCACATA+GGG - tig0022499:58981-59000 None:intergenic 45.0%
GACTGAGAAAACCAACCTGA+TGG - tig0022499:59075-59094 None:intergenic 45.0%
! CCTGTACAAGAGATTTTGGG+AGG - tig0022499:59194-59213 None:intergenic 45.0%
CCTCCCAAAATCTCTTGTAC+AGG + tig0022499:59191-59210 Msa1401070:intron 45.0%
! GGCCCTGTACAAGAGATTTT+GGG - tig0022499:59197-59216 None:intergenic 45.0%
CTGTACATGAGAAGAACACG+GGG - tig0022499:59218-59237 None:intergenic 45.0%
CCTGTACATGAGAAGAACAC+GGG - tig0022499:59219-59238 None:intergenic 45.0%
CAGGATGCATAACCTCTAGT+TGG + tig0022499:59311-59330 Msa1401070:intron 45.0%
GTGCAAGGTTCCTACCTATT+TGG + tig0022499:59413-59432 Msa1401070:CDS 45.0%
AAGGTTCCTACCTATTTGGG+CGG + tig0022499:59417-59436 Msa1401070:CDS 45.0%
GAAATACCGCCCAAATAGGT+AGG - tig0022499:59426-59445 None:intergenic 45.0%
GACAGAAATACCGCCCAAAT+AGG - tig0022499:59430-59449 None:intergenic 45.0%
TTTCTGTTTAACGGCTGCTG+TGG + tig0022499:59452-59471 Msa1401070:CDS 45.0%
TAGCTCTCTTGATTGTTCCC+CGG + tig0022499:59487-59506 Msa1401070:CDS 45.0%
TTATCGGTGGGGAAAACATG+TGG + tig0022499:59599-59618 Msa1401070:CDS 45.0%
CATCATGTGATGCTGCTACA+TGG + tig0022499:59806-59825 Msa1401070:CDS 45.0%
GATGCTGCTACATGGTACTA+TGG + tig0022499:59814-59833 Msa1401070:CDS 45.0%
TGGGGTGAAAATTTCATCCG+TGG + tig0022499:59998-60017 Msa1401070:intron 45.0%
TTCATCCGTGGTTCCAAAAG+TGG + tig0022499:60010-60029 Msa1401070:intron 45.0%
!!! AAGAGCCACTTTTGGAACCA+CGG - tig0022499:60018-60037 None:intergenic 45.0%
!! TGGCAACAAAGAGCCACTTT+TGG - tig0022499:60026-60045 None:intergenic 45.0%
TGCCAGTGCATGTCTGTTAT+CGG + tig0022499:60041-60060 Msa1401070:intron 45.0%
! GGTTAGGTTTGATGGTTGTC+GGG + tig0022499:60539-60558 Msa1401070:intron 45.0%
! GTTAGGTTTGATGGTTGTCG+GGG + tig0022499:60540-60559 Msa1401070:CDS 45.0%
! TTAGGTTTGATGGTTGTCGG+GGG + tig0022499:60541-60560 Msa1401070:CDS 45.0%
GCTATCCGGTCATTCCTAAA+AGG + tig0022499:60607-60626 Msa1401070:CDS 45.0%
! CCCACTCATCAAGTCCTTTT+AGG - tig0022499:60624-60643 None:intergenic 45.0%
ATAAGCGGTGATGTAAACGG+TGG + tig0022499:60693-60712 Msa1401070:three_prime_UTR 45.0%
!!! AAAATAATAAAATTTTAACA+TGG + tig0022499:60127-60146 Msa1401070:intron 5.0%
!! ATTGGATCTGGTGTCGCGTA+TGG - tig0022499:57025-57044 None:intergenic 50.0%
!! CCACAATAGTATCGGCATCG+AGG - tig0022499:57430-57449 None:intergenic 50.0%
CCTCGATGCCGATACTATTG+TGG + tig0022499:57427-57446 Msa1401070:CDS 50.0%
ATCCAGACCTGTTCCGGAAA+TGG + tig0022499:57764-57783 Msa1401070:CDS 50.0%
AGTCTCTCCATTTCCGGAAC+AGG - tig0022499:57774-57793 None:intergenic 50.0%
GTGAGTAGCACAGATTCCTG+TGG + tig0022499:58217-58236 Msa1401070:intron 50.0%
ACTCGACAGCAATTCCGACA+AGG - tig0022499:58275-58294 None:intergenic 50.0%
GAAACCTGTTGATGTCTGGC+AGG + tig0022499:58556-58575 Msa1401070:CDS 50.0%
TTACCTTGGTGGGGTTCTTC+AGG + tig0022499:58689-58708 Msa1401070:intron 50.0%
GTGGGGTTCTTCAGGATGTT+AGG + tig0022499:58697-58716 Msa1401070:intron 50.0%
CAGGATGTTAGGGAACAGCT+TGG + tig0022499:58708-58727 Msa1401070:intron 50.0%
GGATGTTAGGGAACAGCTTG+GGG + tig0022499:58710-58729 Msa1401070:intron 50.0%
GCTCCCTATGTGATCAAGTC+AGG + tig0022499:58975-58994 Msa1401070:CDS 50.0%
! GGTGCCTGACTTGATCACAT+AGG - tig0022499:58982-59001 None:intergenic 50.0%
!!! GGTTGGTTTTCTCAGTCTCC+TGG + tig0022499:59078-59097 Msa1401070:intron 50.0%
! GGGCCCTGTACAAGAGATTT+TGG - tig0022499:59198-59217 None:intergenic 50.0%
CCCGTGTTCTTCTCATGTAC+AGG + tig0022499:59216-59235 Msa1401070:intron 50.0%
CTCGAATGGTTCTCAGTGCA+AGG + tig0022499:59398-59417 Msa1401070:CDS 50.0%
CAAAGACTCAGGAAGTGACG+AGG - tig0022499:59640-59659 None:intergenic 50.0%
CTCGTCACTTCCTGAGTCTT+TGG + tig0022499:59638-59657 Msa1401070:CDS 50.0%
!! TGGATTAGGGATGGCCTTGT+TGG + tig0022499:59834-59853 Msa1401070:CDS 50.0%
! AGGCAAAGATGGAGCACCAA+TGG - tig0022499:59860-59879 None:intergenic 50.0%
AGCCGATAACAGACATGCAC+TGG - tig0022499:60046-60065 None:intergenic 50.0%
GTGTGTTGCAGGCTGATGGT+TGG + tig0022499:57188-57207 Msa1401070:intron 55.0%
TGGCTCGACCACCATAACTC+CGG - tig0022499:57525-57544 None:intergenic 55.0%
CTCCATTTCCGGAACAGGTC+TGG - tig0022499:57769-57788 None:intergenic 55.0%
ACTGGGACCCCTTAAGCCTT+GGG + tig0022499:58511-58530 Msa1401070:CDS 55.0%
CACCAGTCCCAAGGCTTAAG+GGG - tig0022499:58521-58540 None:intergenic 55.0%
CCACCAGTCCCAAGGCTTAA+GGG - tig0022499:58522-58541 None:intergenic 55.0%
TCCACCAGTCCCAAGGCTTA+AGG - tig0022499:58523-58542 None:intergenic 55.0%
CAAGATGTCCACCAGTCCCA+AGG - tig0022499:58530-58549 None:intergenic 55.0%
! CTTGGGACTGGTGGACATCT+TGG + tig0022499:58528-58547 Msa1401070:CDS 55.0%
CATCCTGAAGAACCCCACCA+AGG - tig0022499:58695-58714 None:intergenic 55.0%
GAGTCCCTTCCTGGAACAAG+AGG + tig0022499:58732-58751 Msa1401070:CDS 55.0%
TCCCTTCCTGGAACAAGAGG+CGG + tig0022499:58735-58754 Msa1401070:CDS 55.0%
! TTTTGGCCGCCTCTTGTTCC+AGG - tig0022499:58744-58763 None:intergenic 55.0%
GGTGTCAAGCAGCTCTCGAA+TGG + tig0022499:59384-59403 Msa1401070:CDS 55.0%
! TGGAGCACCAATGGCCAACA+AGG - tig0022499:59851-59870 None:intergenic 55.0%
!! GGTTGTCGGGGGCATCATAT+TGG + tig0022499:60552-60571 Msa1401070:CDS 55.0%
CTCTGACCTTCGGTCACCAC+TGG - tig0022499:56704-56723 None:intergenic 60.0%
CACTGGGACCCCTTAAGCCT+TGG + tig0022499:58510-58529 Msa1401070:CDS 60.0%
GACCCCTTAAGCCTTGGGAC+TGG + tig0022499:58516-58535 Msa1401070:CDS 60.0%
CCCTTAAGCCTTGGGACTGG+TGG + tig0022499:58519-58538 Msa1401070:CDS 60.0%
GCCGCCTCTTGTTCCAGGAA+GGG - tig0022499:58739-58758 None:intergenic 60.0%
ACGGCTGCTGTGGTGTCTCT+TGG + tig0022499:59462-59481 Msa1401070:CDS 60.0%
AGTCCACGGCATCACTTGCC+GGG - tig0022499:59508-59527 None:intergenic 60.0%
CAGTCCACGGCATCACTTGC+CGG - tig0022499:59509-59528 None:intergenic 60.0%
!! GGGATGGCCTTGTTGGCCAT+TGG + tig0022499:59841-59860 Msa1401070:CDS 60.0%
AGATGCACGCACGCAGCCAG+TGG + tig0022499:56685-56704 Msa1401070:five_prime_UTR 65.0%
ACGCAGCCAGTGGTGACCGA+AGG + tig0022499:56695-56714 Msa1401070:five_prime_UTR 65.0%
CAGCTTGGGGAGTCCCTTCC+TGG + tig0022499:58723-58742 Msa1401070:CDS 65.0%
GGCCGCCTCTTGTTCCAGGA+AGG - tig0022499:58740-58759 None:intergenic 65.0%
TTCCCCGGCAAGTGATGCCG+TGG + tig0022499:59502-59521 Msa1401070:CDS 65.0%
GTCCACGGCATCACTTGCCG+GGG - tig0022499:59507-59526 None:intergenic 65.0%
CGGCAAGTGATGCCGTGGAC+TGG + tig0022499:59507-59526 Msa1401070:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0022499 gene 56614 60879 56614 ID=Msa1401070;Name=Msa1401070
tig0022499 mRNA 56614 60879 56614 ID=Msa1401070-mRNA-1;Parent=Msa1401070;Name=Msa1401070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=236|0.88|0.9|1|1|1|10|198|559
tig0022499 exon 56614 57104 56614 ID=Msa1401070-mRNA-1:exon:18070;Parent=Msa1401070-mRNA-1
tig0022499 exon 57199 57319 57199 ID=Msa1401070-mRNA-1:exon:18071;Parent=Msa1401070-mRNA-1
tig0022499 exon 57420 57605 57420 ID=Msa1401070-mRNA-1:exon:18072;Parent=Msa1401070-mRNA-1
tig0022499 exon 57679 57842 57679 ID=Msa1401070-mRNA-1:exon:18073;Parent=Msa1401070-mRNA-1
tig0022499 exon 58470 58577 58470 ID=Msa1401070-mRNA-1:exon:18074;Parent=Msa1401070-mRNA-1
tig0022499 exon 58711 58848 58711 ID=Msa1401070-mRNA-1:exon:18075;Parent=Msa1401070-mRNA-1
tig0022499 exon 58944 59078 58944 ID=Msa1401070-mRNA-1:exon:18076;Parent=Msa1401070-mRNA-1
tig0022499 exon 59372 59678 59372 ID=Msa1401070-mRNA-1:exon:18077;Parent=Msa1401070-mRNA-1
tig0022499 exon 59788 59911 59788 ID=Msa1401070-mRNA-1:exon:18078;Parent=Msa1401070-mRNA-1
tig0022499 exon 60540 60879 60540 ID=Msa1401070-mRNA-1:exon:18079;Parent=Msa1401070-mRNA-1
tig0022499 five_prime_UTR 56614 56849 56614 ID=Msa1401070-mRNA-1:five_prime_utr;Parent=Msa1401070-mRNA-1
tig0022499 CDS 56850 57104 56850 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 57199 57319 57199 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 57420 57605 57420 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 57679 57842 57679 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 58470 58577 58470 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 58711 58848 58711 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 58944 59078 58944 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 59372 59678 59372 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 59788 59911 59788 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 CDS 60540 60681 60540 ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1
tig0022499 three_prime_UTR 60682 60879 60682 ID=Msa1401070-mRNA-1:three_prime_utr;Parent=Msa1401070-mRNA-1
Gene Sequence

>Msa1401070

ATGAAACCAAACAGTAGAATCAGTTGGCGTTCTTTACTATGCTTTATTATTTCTCTACTTTGTATTCTTCAATTCGAACCTTGTTTAGGAGGATCTTACAATGAAGAAGAAGCATACGTTACTCTTTTATACGGAGATGAATTCTTATTGGGCGTTCGTGTTCTCGGTAAATCCATACGCGACACCAGATCCAATAAACACATGGTTGTTTTGGTCTCTGATGGTGTTTCCAATTTCGCCAAAAACCTTCTCCGTGCTGATGGTTGGATAGTTGAGCAGATTACTTTACTTGCCAATCCTAATCGTGTTCGTCCTAAGAGATTTTGGGGTGTTTACACTAAGTTGAAAATCTTTAACATGACCAATTACAAAAAAGTTGTTTACCTCGATGCCGATACTATTGTGGTTAAAAATATTGATGATCTTTTCAAATGTCGGAAATTCTGTGCTAATTTGAAGCATTCTGAGAGGTTGAATTCCGGAGTTATGGTGGTCGAGCCATCTGAAACTCTTTTTAACGACATGGTCAACAAAATTAAAACTACTAAATCTTACACCGGAGGAGATCAGGGATTTCTAAACTCCTATTACTCTGACTTTCCCAATGCACGTGTTTTTGATCCAAACTTGTCCCCAGAAGAGTTGAAATCCAGACCTGTTCCGGAAATGGAGAGACTATCAACATTGTATAATGCAGATGTTGGTCTTTACATGCTCGCTAACAAGTGGATGGTAGATGAGAAAGAGCTCCGTGTGATTCACTATACACTGGGACCCCTTAAGCCTTGGGACTGGTGGACATCTTGGCTTTTGAAACCTGTTGATGTCTGGCAGGATGTTAGGGAACAGCTTGGGGAGTCCCTTCCTGGAACAAGAGGCGGCCAAAATCCTAATGACTATTTTCTTGTGAAATTTCTCTTTTTCCTACCATTCTGTGCTTTATTATTCTACTGCTATAATTCACTTATGAAGAATCGAGAGTACTTTGGTTCATTTTGTAGAGGCTCCCTATGTGATCAAGTCAGGCACCTTTATTATAAGATTAGATCAAGTGGACCACTTCCTTATACAACTATCTCAACATCAGGAATCAATTCAATCCATCAGATTTGTTTCGATGGTGTCAAGCAGCTCTCGAATGGTTCTCAGTGCAAGGTTCCTACCTATTTGGGCGGTATTTCTGTCTGTTTCTGTTTAACGGCTGCTGTGGTGTCTCTTGGACTAGCTCTCTTGATTGTTCCCCGGCAAGTGATGCCGTGGACTGGTTTGCTTTTGATGTATGAATGGACATTCACAATGTTTATTGTATTATTTGGAGGTTATCTTCATTTGGTTTATCGGTGGGGAAAACATGTGGCATCACGAGCAGCATCCTCGTCACTTCCTGAGTCTTTGGATTATGATTCTGGAAAACGTCATCAAAGACAGATATCATCATGTGATGCTGCTACATGGTACTATGGATTAGGGATGGCCTTGTTGGCCATTGGTGCTCCATCTTTGCCTTGTCTTTTTGGAATAACTGCCTTGTTTTTAAGGTTAGGTTTGATGGTTGTCGGGGGCATCATATTGGCATCTTTTATGACATATGCTTCTGAACATCTTGCTATCCGGTCATTCCTAAAAGGACTTGATGAGTGGGATATTGCTCCAAATAGGAGCCTGTGTTTCATATGTTGA

Protein sequence

>Msa1401070

MKPNSRISWRSLLCFIISLLCILQFEPCLGGSYNEEEAYVTLLYGDEFLLGVRVLGKSIRDTRSNKHMVVLVSDGVSNFAKNLLRADGWIVEQITLLANPNRVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVVKNIDDLFKCRKFCANLKHSERLNSGVMVVEPSETLFNDMVNKIKTTKSYTGGDQGFLNSYYSDFPNARVFDPNLSPEELKSRPVPEMERLSTLYNADVGLYMLANKWMVDEKELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLGESLPGTRGGQNPNDYFLVKFLFFLPFCALLFYCYNSLMKNREYFGSFCRGSLCDQVRHLYYKIRSSGPLPYTTISTSGINSIHQICFDGVKQLSNGSQCKVPTYLGGISVCFCLTAAVVSLGLALLIVPRQVMPWTGLLLMYEWTFTMFIVLFGGYLHLVYRWGKHVASRAASSSLPESLDYDSGKRHQRQISSCDAATWYYGLGMALLAIGAPSLPCLFGITALFLRLGLMVVGGIILASFMTYASEHLAIRSFLKGLDEWDIAPNRSLCFIC*