Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1401070 | XP_013450547.1 | 94.464 | 560 | 19 | 4 | 1 | 559 | 1 | 549 | 0.0 | 1073 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1401070 | sp|Q8GWB7|GUX6_ARATH | 65.642 | 553 | 164 | 7 | 11 | 559 | 7 | 537 | 0.0 | 676 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1401070 | A0A072UFK8 | 93.381 | 559 | 27 | 2 | 1 | 559 | 1 | 549 | 0.0 | 1058 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0033820 | Msa1401070 | 0.826332 | 2.874818e-54 | -8.615850e-47 |
Msa0070740 | Msa1401070 | -0.815896 | 7.308034e-52 | -8.615850e-47 |
Msa1401070 | Msa1412500 | 0.805186 | 1.507468e-49 | -8.615850e-47 |
Msa0615430 | Msa1401070 | -0.800096 | 1.691343e-48 | -8.615850e-47 |
Msa0618490 | Msa1401070 | -0.808506 | 2.994618e-50 | -8.615850e-47 |
Msa0625440 | Msa1401070 | -0.815050 | 1.127473e-51 | -8.615850e-47 |
Msa0631950 | Msa1401070 | -0.801840 | 7.448484e-49 | -8.615850e-47 |
Msa0645740 | Msa1401070 | 0.801974 | 6.988505e-49 | -8.615850e-47 |
Msa0654880 | Msa1401070 | -0.807953 | 3.929082e-50 | -8.615850e-47 |
Msa0655970 | Msa1401070 | 0.821670 | 3.569311e-53 | -8.615850e-47 |
Msa0668160 | Msa1401070 | -0.801512 | 8.694562e-49 | -8.615850e-47 |
Msa0691080 | Msa1401070 | -0.804492 | 2.104909e-49 | -8.615850e-47 |
Msa0698650 | Msa1401070 | -0.804182 | 2.442168e-49 | -8.615850e-47 |
Msa0814160 | Msa1401070 | 0.808119 | 3.622426e-50 | -8.615850e-47 |
Msa0822410 | Msa1401070 | 0.807412 | 5.118515e-50 | -8.615850e-47 |
Msa0438440 | Msa1401070 | -0.804078 | 2.567592e-49 | -8.615850e-47 |
Msa0476960 | Msa1401070 | 0.804783 | 1.830294e-49 | -8.615850e-47 |
Msa1035790 | Msa1401070 | -0.805342 | 1.398104e-49 | -8.615850e-47 |
Msa1090150 | Msa1401070 | 0.806843 | 6.756194e-50 | -8.615850e-47 |
Msa0258700 | Msa1401070 | 0.818526 | 1.872041e-52 | -8.615850e-47 |
Msa1127910 | Msa1401070 | 0.836306 | 1.011062e-56 | -8.615850e-47 |
Msa1129600 | Msa1401070 | 0.976970 | 7.448134e-143 | -8.615850e-47 |
Msa1165820 | Msa1401070 | 0.817992 | 2.472815e-52 | -8.615850e-47 |
Msa1168960 | Msa1401070 | 0.829948 | 3.867797e-55 | -8.615850e-47 |
Msa1169050 | Msa1401070 | 0.815432 | 9.274801e-52 | -8.615850e-47 |
Msa0535020 | Msa1401070 | -0.823683 | 1.213694e-53 | -8.615850e-47 |
Msa0535050 | Msa1401070 | -0.818938 | 1.509749e-52 | -8.615850e-47 |
Msa0549340 | Msa1401070 | 0.804904 | 1.726871e-49 | -8.615850e-47 |
Msa0561420 | Msa1401070 | -0.827653 | 1.388892e-54 | -8.615850e-47 |
Msa0568120 | Msa1401070 | -0.803413 | 3.527865e-49 | -8.615850e-47 |
Msa0569230 | Msa1401070 | -0.815252 | 1.017064e-51 | -8.615850e-47 |
Msa0569930 | Msa1401070 | -0.806304 | 8.777177e-50 | -8.615850e-47 |
Msa0570250 | Msa1401070 | -0.811707 | 6.118869e-51 | -8.615850e-47 |
Msa0846070 | Msa1401070 | -0.819275 | 1.264786e-52 | -8.615850e-47 |
Msa0861730 | Msa1401070 | 0.803710 | 3.060976e-49 | -8.615850e-47 |
Msa0882430 | Msa1401070 | 0.826124 | 3.221531e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1401070 | MtrunA17_Chr7g0274421 | 93.381 | 559 | 27 | 2 | 1 | 559 | 1 | 549 | 0.0 | 1058 |
Msa1401070 | MtrunA17_Chr1g0190421 | 77.505 | 529 | 110 | 2 | 32 | 559 | 21 | 541 | 0.0 | 837 |
Msa1401070 | MtrunA17_Chr5g0399211 | 32.700 | 263 | 159 | 8 | 33 | 283 | 47 | 303 | 1.65e-32 | 130 |
Msa1401070 | MtrunA17_Chr4g0056181 | 30.916 | 262 | 163 | 8 | 34 | 283 | 35 | 290 | 2.91e-28 | 118 |
Msa1401070 | MtrunA17_Chr3g0129911 | 34.969 | 163 | 105 | 1 | 37 | 198 | 305 | 467 | 2.66e-26 | 113 |
Msa1401070 | MtrunA17_Chr1g0159301 | 34.731 | 167 | 104 | 4 | 35 | 198 | 311 | 475 | 9.46e-26 | 111 |
Msa1401070 | MtrunA17_Chr7g0272921 | 35.714 | 168 | 101 | 2 | 38 | 198 | 270 | 437 | 5.96e-24 | 105 |
Msa1401070 | MtrunA17_Chr1g0153481 | 31.707 | 164 | 111 | 1 | 35 | 197 | 299 | 462 | 1.82e-23 | 104 |
Msa1401070 | MtrunA17_Chr1g0153471 | 31.098 | 164 | 112 | 1 | 35 | 197 | 295 | 458 | 4.24e-23 | 103 |
Msa1401070 | MtrunA17_Chr1g0191821 | 34.337 | 166 | 104 | 2 | 38 | 198 | 267 | 432 | 4.82e-23 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1401070 | AT5G18480.1 | 65.642 | 553 | 164 | 7 | 11 | 559 | 7 | 537 | 0.0 | 676 |
Msa1401070 | AT1G77130.1 | 32.051 | 234 | 135 | 6 | 35 | 263 | 283 | 497 | 6.71e-28 | 118 |
Msa1401070 | AT1G08990.1 | 41.358 | 162 | 92 | 3 | 38 | 197 | 279 | 439 | 8.17e-28 | 118 |
Msa1401070 | AT3G18660.2 | 33.333 | 183 | 119 | 2 | 17 | 198 | 304 | 484 | 4.04e-27 | 116 |
Msa1401070 | AT3G18660.3 | 33.333 | 183 | 119 | 2 | 17 | 198 | 299 | 479 | 4.48e-27 | 116 |
Msa1401070 | AT3G18660.1 | 33.333 | 183 | 119 | 2 | 17 | 198 | 300 | 480 | 4.61e-27 | 116 |
Msa1401070 | AT4G16600.1 | 31.801 | 261 | 161 | 9 | 34 | 282 | 56 | 311 | 9.65e-27 | 114 |
Msa1401070 | AT2G35710.1 | 31.034 | 261 | 162 | 8 | 34 | 282 | 60 | 314 | 3.00e-26 | 112 |
Msa1401070 | AT2G35710.4 | 31.034 | 261 | 162 | 8 | 34 | 282 | 60 | 314 | 4.35e-26 | 109 |
Msa1401070 | AT1G54940.1 | 36.646 | 161 | 101 | 1 | 38 | 197 | 272 | 432 | 5.34e-24 | 106 |
Msa1401070 | AT4G33330.1 | 33.537 | 164 | 108 | 1 | 35 | 197 | 299 | 462 | 2.64e-22 | 101 |
Msa1401070 | AT4G33330.4 | 33.537 | 164 | 108 | 1 | 35 | 197 | 310 | 473 | 2.92e-22 | 101 |
Msa1401070 | AT4G33330.2 | 33.537 | 164 | 108 | 1 | 35 | 197 | 299 | 462 | 3.42e-22 | 101 |
Msa1401070 | AT4G33330.5 | 33.537 | 164 | 108 | 1 | 35 | 197 | 231 | 394 | 3.94e-22 | 100 |
Msa1401070 | AT2G35710.2 | 32.178 | 202 | 125 | 6 | 87 | 282 | 11 | 206 | 3.81e-21 | 96.3 |
Msa1401070 | AT4G33330.3 | 33.544 | 158 | 104 | 1 | 35 | 191 | 310 | 467 | 5.66e-21 | 96.7 |
Msa1401070 | AT1G60450.1 | 25.556 | 270 | 137 | 8 | 35 | 263 | 18 | 264 | 1.18e-16 | 82.0 |
Msa1401070 | AT1G60470.1 | 26.217 | 267 | 133 | 11 | 38 | 263 | 24 | 267 | 2.64e-14 | 74.7 |
Msa1401070 | AT1G56600.1 | 24.823 | 282 | 140 | 9 | 27 | 263 | 12 | 266 | 9.41e-13 | 70.1 |
Msa1401070 | AT1G09350.1 | 26.259 | 278 | 132 | 10 | 32 | 263 | 10 | 260 | 1.42e-12 | 69.7 |
Find 145 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATGTTTATTGTATTATT+TGG | 0.112274 | tig0022499:+59558 | Msa1401070:CDS |
GAAAATAGTCATTAGGATTT+TGG | 0.140955 | tig0022499:-58758 | None:intergenic |
CGTTGGATATATTTATTTAA+AGG | 0.166832 | tig0022499:-56788 | None:intergenic |
CAAAACAACCATGTGTTTAT+TGG | 0.172219 | tig0022499:-57040 | None:intergenic |
CTCGTCACTTCCTGAGTCTT+TGG | 0.182248 | tig0022499:+59638 | Msa1401070:CDS |
GAGTCTTTGGATTATGATTC+TGG | 0.187029 | tig0022499:+59651 | Msa1401070:CDS |
GTGTTCGTCCTAAGAGATTT+TGG | 0.201254 | tig0022499:+57248 | Msa1401070:CDS |
GGTCTGGATTTCAACTCTTC+TGG | 0.218207 | tig0022499:-57750 | None:intergenic |
GTGGGGTTCTTCAGGATGTT+AGG | 0.229561 | tig0022499:+58697 | Msa1401070:intron |
GTTGATAGTCTCTCCATTTC+CGG | 0.233884 | tig0022499:-57777 | None:intergenic |
GTGCAAGGTTCCTACCTATT+TGG | 0.237507 | tig0022499:+59413 | Msa1401070:CDS |
TTCTGTCTGTTTCTGTTTAA+CGG | 0.247943 | tig0022499:+59443 | Msa1401070:CDS |
CAGCTTGGGGAGTCCCTTCC+TGG | 0.263990 | tig0022499:+58723 | Msa1401070:CDS |
ATACGGAGATGAATTCTTAT+TGG | 0.271311 | tig0022499:+56978 | Msa1401070:CDS |
CAATAAACACATGGTTGTTT+TGG | 0.272587 | tig0022499:+57041 | Msa1401070:CDS |
AACTCTTCTGGGGACAAGTT+TGG | 0.282864 | tig0022499:-57738 | None:intergenic |
GTTATCTTCATTTGGTTTAT+CGG | 0.283666 | tig0022499:+59583 | Msa1401070:CDS |
ATGAAACACAGGCTCCTATT+TGG | 0.301950 | tig0022499:-60652 | None:intergenic |
CTTCAATTCGAACCTTGTTT+AGG | 0.314665 | tig0022499:+56916 | Msa1401070:CDS |
ATTTGGAGGTTATCTTCATT+TGG | 0.317707 | tig0022499:+59575 | Msa1401070:CDS |
GCTATCCGGTCATTCCTAAA+AGG | 0.323926 | tig0022499:+60607 | Msa1401070:CDS |
GCTACATGGTACTATGGATT+AGG | 0.324256 | tig0022499:+59820 | Msa1401070:CDS |
CTCCATTTCCGGAACAGGTC+TGG | 0.335358 | tig0022499:-57766 | None:intergenic |
TGCAAGGTTCCTACCTATTT+GGG | 0.337684 | tig0022499:+59414 | Msa1401070:CDS |
TTGATCTAATCTTATAATAA+AGG | 0.339906 | tig0022499:-59000 | None:intergenic |
TACGGAGATGAATTCTTATT+GGG | 0.349527 | tig0022499:+56979 | Msa1401070:CDS |
TTCACAAGAAAATAGTCATT+AGG | 0.353485 | tig0022499:-58765 | None:intergenic |
TTATTGGGCGTTCGTGTTCT+CGG | 0.354632 | tig0022499:+56994 | Msa1401070:CDS |
CTTGGGACTGGTGGACATCT+TGG | 0.360363 | tig0022499:+58528 | Msa1401070:CDS |
CGCCAACTGATTCTACTGTT+TGG | 0.368147 | tig0022499:-56856 | None:intergenic |
GGTTAGGTTTGATGGTTGTC+GGG | 0.371768 | tig0022499:+60539 | Msa1401070:intron |
CTCTTAGGACGAACACGATT+AGG | 0.374110 | tig0022499:-57241 | None:intergenic |
CAGTCCACGGCATCACTTGC+CGG | 0.376274 | tig0022499:-59506 | None:intergenic |
ATCCAGACCTGTTCCGGAAA+TGG | 0.383357 | tig0022499:+57764 | Msa1401070:CDS |
GTTGAAATCCAGACCTGTTC+CGG | 0.386303 | tig0022499:+57758 | Msa1401070:CDS |
ACGGCTGCTGTGGTGTCTCT+TGG | 0.387385 | tig0022499:+59462 | Msa1401070:CDS |
CCACCAGTCCCAAGGCTTAA+GGG | 0.387655 | tig0022499:-58519 | None:intergenic |
AGGTTAGGTTTGATGGTTGT+CGG | 0.394243 | tig0022499:+60538 | Msa1401070:intron |
GTCTGGATTTCAACTCTTCT+GGG | 0.395720 | tig0022499:-57749 | None:intergenic |
TAGAACAACAATACAAATCT+AGG | 0.397919 | tig0022499:-60747 | None:intergenic |
ATTGGGAAAGTCAGAGTAAT+AGG | 0.399496 | tig0022499:-57700 | None:intergenic |
AGTCTCTCCATTTCCGGAAC+AGG | 0.401528 | tig0022499:-57771 | None:intergenic |
TAAACACCCCAAAATCTCTT+AGG | 0.401974 | tig0022499:-57256 | None:intergenic |
CTAGTTGAAGATGTAAATAA+AGG | 0.402579 | tig0022499:+60767 | Msa1401070:three_prime_UTR |
GACAGAAATACCGCCCAAAT+AGG | 0.402864 | tig0022499:-59427 | None:intergenic |
AGGATGTTAGGGAACAGCTT+GGG | 0.405735 | tig0022499:+58709 | Msa1401070:intron |
TCCACCAGTCCCAAGGCTTA+AGG | 0.409126 | tig0022499:-58520 | None:intergenic |
TTTCAGTCGTCTCTGACCTT+CGG | 0.409977 | tig0022499:-56711 | None:intergenic |
ATTACCTGCCAGACATCAAC+AGG | 0.412860 | tig0022499:-58560 | None:intergenic |
ATGTATCATTGTATTTGCTT+AGG | 0.416458 | tig0022499:+60801 | Msa1401070:three_prime_UTR |
CTACATGGTACTATGGATTA+GGG | 0.418213 | tig0022499:+59821 | Msa1401070:CDS |
TGGATTAGGGATGGCCTTGT+TGG | 0.421428 | tig0022499:+59834 | Msa1401070:CDS |
TGGGGTTCTTCAGGATGTTA+GGG | 0.430964 | tig0022499:+58698 | Msa1401070:intron |
ATTATCCCTCTTGTTTCCGT+TGG | 0.431578 | tig0022499:-56805 | None:intergenic |
ATATTTATTTAAAGGAAAGT+TGG | 0.431720 | tig0022499:-56780 | None:intergenic |
CTCTGACCTTCGGTCACCAC+TGG | 0.435511 | tig0022499:-56701 | None:intergenic |
AACCATGTGTTTATTGGATC+TGG | 0.436495 | tig0022499:-57034 | None:intergenic |
CATTCTGAGAGGTTGAATTC+CGG | 0.440137 | tig0022499:+57503 | Msa1401070:CDS |
TTATTCTTTCAAAATCTAGT+TGG | 0.442653 | tig0022499:+60846 | Msa1401070:three_prime_UTR |
CACTGGGACCCCTTAAGCCT+TGG | 0.445458 | tig0022499:+58510 | Msa1401070:CDS |
AGTCCACGGCATCACTTGCC+GGG | 0.455569 | tig0022499:-59505 | None:intergenic |
AGTGGGATATTGCTCCAAAT+AGG | 0.456014 | tig0022499:+60638 | Msa1401070:CDS |
GATGCTGCTACATGGTACTA+TGG | 0.457667 | tig0022499:+59814 | Msa1401070:CDS |
ATTGGATCTGGTGTCGCGTA+TGG | 0.460416 | tig0022499:-57022 | None:intergenic |
CGGCAAGTGATGCCGTGGAC+TGG | 0.461514 | tig0022499:+59507 | Msa1401070:CDS |
TCTTCATTTGGTTTATCGGT+GGG | 0.463764 | tig0022499:+59587 | Msa1401070:CDS |
CTGCTATAATTCACTTATGA+AGG | 0.468846 | tig0022499:+58827 | Msa1401070:CDS |
GATGTTGAGATAGTTGTATA+AGG | 0.472611 | tig0022499:-59034 | None:intergenic |
ATGTTTATTGTATTATTTGG+AGG | 0.476336 | tig0022499:+59561 | Msa1401070:CDS |
CAATTCGAACCTTGTTTAGG+AGG | 0.477001 | tig0022499:+56919 | Msa1401070:CDS |
CATATTAAGATTTGTTTCGA+TGG | 0.477072 | tig0022499:+59363 | Msa1401070:intron |
GCCGCCTCTTGTTCCAGGAA+GGG | 0.477864 | tig0022499:-58736 | None:intergenic |
CTTCTGAACATCTTGCTATC+CGG | 0.479536 | tig0022499:+60593 | Msa1401070:CDS |
GAGGTTGAATTCCGGAGTTA+TGG | 0.484212 | tig0022499:+57511 | Msa1401070:CDS |
ATCTTCATTTGGTTTATCGG+TGG | 0.485026 | tig0022499:+59586 | Msa1401070:CDS |
AGGAATCAATTCAATCCATC+AGG | 0.487708 | tig0022499:+59057 | Msa1401070:CDS |
GGGATGGCCTTGTTGGCCAT+TGG | 0.489010 | tig0022499:+59841 | Msa1401070:CDS |
GACCCCTTAAGCCTTGGGAC+TGG | 0.492980 | tig0022499:+58516 | Msa1401070:CDS |
ATAATAAGCGGTGATGTAAA+CGG | 0.494535 | tig0022499:+60690 | Msa1401070:three_prime_UTR |
ATAATAAAGCACAGAATGGT+AGG | 0.502328 | tig0022499:-58800 | None:intergenic |
TTGCAGAATCGAGAGTACTT+TGG | 0.502931 | tig0022499:+58938 | Msa1401070:intron |
GAGATAGTTGTATAAGGAAG+TGG | 0.503037 | tig0022499:-59028 | None:intergenic |
GGCCGCCTCTTGTTCCAGGA+AGG | 0.503271 | tig0022499:-58737 | None:intergenic |
ACTGGGACCCCTTAAGCCTT+GGG | 0.507201 | tig0022499:+58511 | Msa1401070:CDS |
CCCTTAAGCCTTGGGACTGG+TGG | 0.507393 | tig0022499:+58519 | Msa1401070:CDS |
AGGCACAATTCTGTCGGGTA+AGG | 0.509918 | tig0022499:-60869 | None:intergenic |
GCTCCCTATGTGATCAAGTC+AGG | 0.510268 | tig0022499:+58975 | Msa1401070:CDS |
TATACAACTATCTCAACATC+AGG | 0.514583 | tig0022499:+59037 | Msa1401070:CDS |
TATTATAAGATTAGATCAAG+TGG | 0.524639 | tig0022499:+59004 | Msa1401070:CDS |
CTTCATTTGGTTTATCGGTG+GGG | 0.530069 | tig0022499:+59588 | Msa1401070:CDS |
AGGACGAACACGATTAGGAT+TGG | 0.530654 | tig0022499:-57236 | None:intergenic |
CCTCGATGCCGATACTATTG+TGG | 0.530695 | tig0022499:+57427 | Msa1401070:CDS |
CTCGAATGGTTCTCAGTGCA+AGG | 0.544103 | tig0022499:+59398 | Msa1401070:CDS |
GTGCCTGACTTGATCACATA+GGG | 0.545198 | tig0022499:-58978 | None:intergenic |
TTCCCCGGCAAGTGATGCCG+TGG | 0.546088 | tig0022499:+59502 | Msa1401070:CDS |
GTTAGGTTTGATGGTTGTCG+GGG | 0.547123 | tig0022499:+60540 | Msa1401070:CDS |
GAAACCTGTTGATGTCTGGC+AGG | 0.547142 | tig0022499:+58556 | Msa1401070:CDS |
CAGGATGTTAGGGAACAGCT+TGG | 0.547351 | tig0022499:+58708 | Msa1401070:intron |
TAGAATAATAAAGCACAGAA+TGG | 0.551207 | tig0022499:-58804 | None:intergenic |
TAGCTCTCTTGATTGTTCCC+CGG | 0.552382 | tig0022499:+59487 | Msa1401070:CDS |
TGGAGCACCAATGGCCAACA+AGG | 0.554201 | tig0022499:-59848 | None:intergenic |
CTTTAAATAAATATATCCAA+CGG | 0.558224 | tig0022499:+56789 | Msa1401070:five_prime_UTR |
AGGCAAAGATGGAGCACCAA+TGG | 0.558429 | tig0022499:-59857 | None:intergenic |
ACATTGTATAATGCAGATGT+TGG | 0.559822 | tig0022499:+57798 | Msa1401070:CDS |
GGATGTTAGGGAACAGCTTG+GGG | 0.560129 | tig0022499:+58710 | Msa1401070:intron |
CGTGTGATTCACTATACACT+GGG | 0.562412 | tig0022499:+58494 | Msa1401070:CDS |
TCCCTTCCTGGAACAAGAGG+CGG | 0.563395 | tig0022499:+58735 | Msa1401070:CDS |
TCTTTACATGCTCGCTAACA+AGG | 0.564106 | tig0022499:+57821 | Msa1401070:CDS |
GTGTGTTGCAGGCTGATGGT+TGG | 0.566359 | tig0022499:+57188 | Msa1401070:intron |
CCGTGTGATTCACTATACAC+TGG | 0.569851 | tig0022499:+58493 | Msa1401070:CDS |
GAATCATAATCCAAAGACTC+AGG | 0.570217 | tig0022499:-59648 | None:intergenic |
CACCAGTCCCAAGGCTTAAG+GGG | 0.573084 | tig0022499:-58518 | None:intergenic |
GGTGTCAAGCAGCTCTCGAA+TGG | 0.582811 | tig0022499:+59384 | Msa1401070:CDS |
GAGTCCCTTCCTGGAACAAG+AGG | 0.585313 | tig0022499:+58732 | Msa1401070:CDS |
CATCATGTGATGCTGCTACA+TGG | 0.586772 | tig0022499:+59806 | Msa1401070:CDS |
GAAATACCGCCCAAATAGGT+AGG | 0.586979 | tig0022499:-59423 | None:intergenic |
TCCTAAAAGGACTTGATGAG+TGG | 0.590262 | tig0022499:+60620 | Msa1401070:CDS |
CCTAAAAGGACTTGATGAGT+GGG | 0.598813 | tig0022499:+60621 | Msa1401070:CDS |
GTTGAATTCCGGAGTTATGG+TGG | 0.600129 | tig0022499:+57514 | Msa1401070:CDS |
TATATCCAACGGAAACAAGA+GGG | 0.602807 | tig0022499:+56800 | Msa1401070:five_prime_UTR |
TTGTAAGATCCTCCTAAACA+AGG | 0.608903 | tig0022499:-56928 | None:intergenic |
ATCAAAAGCAAACCAGTCCA+CGG | 0.610095 | tig0022499:-59519 | None:intergenic |
AGATGCACGCACGCAGCCAG+TGG | 0.613650 | tig0022499:+56685 | Msa1401070:five_prime_UTR |
TTTCTGTTTAACGGCTGCTG+TGG | 0.614224 | tig0022499:+59452 | Msa1401070:CDS |
CAAGATGTCCACCAGTCCCA+AGG | 0.614633 | tig0022499:-58527 | None:intergenic |
AAAACTACTAAATCTTACAC+CGG | 0.615106 | tig0022499:+57581 | Msa1401070:CDS |
ATATATCCAACGGAAACAAG+AGG | 0.615931 | tig0022499:+56799 | Msa1401070:five_prime_UTR |
AAAATCAACATATGAAACAC+AGG | 0.615989 | tig0022499:-60663 | None:intergenic |
GGTGCCTGACTTGATCACAT+AGG | 0.616621 | tig0022499:-58979 | None:intergenic |
TCTGGATTTCAACTCTTCTG+GGG | 0.623762 | tig0022499:-57748 | None:intergenic |
CACCAGATCCAATAAACACA+TGG | 0.629948 | tig0022499:+57032 | Msa1401070:CDS |
ACGCAGCCAGTGGTGACCGA+AGG | 0.632731 | tig0022499:+56695 | Msa1401070:five_prime_UTR |
ATGGTACTATGGATTAGGGA+TGG | 0.639457 | tig0022499:+59825 | Msa1401070:CDS |
TGGCTCGACCACCATAACTC+CGG | 0.646787 | tig0022499:-57522 | None:intergenic |
AACCAAACAGTAGAATCAGT+TGG | 0.648274 | tig0022499:+56854 | Msa1401070:CDS |
AAGGTTCCTACCTATTTGGG+CGG | 0.652522 | tig0022499:+59417 | Msa1401070:CDS |
TTAGGTTTGATGGTTGTCGG+GGG | 0.659292 | tig0022499:+60541 | Msa1401070:CDS |
TTATCGGTGGGGAAAACATG+TGG | 0.662735 | tig0022499:+59599 | Msa1401070:CDS |
GTCCACGGCATCACTTGCCG+GGG | 0.666206 | tig0022499:-59504 | None:intergenic |
ACTACTAAATCTTACACCGG+AGG | 0.674410 | tig0022499:+57584 | Msa1401070:CDS |
CAAAGACTCAGGAAGTGACG+AGG | 0.676512 | tig0022499:-59637 | None:intergenic |
CCACAATAGTATCGGCATCG+AGG | 0.695118 | tig0022499:-57427 | None:intergenic |
CCAGTGTATAGTGAATCACA+CGG | 0.701291 | tig0022499:-58493 | None:intergenic |
CTAATTTGAAGCATTCTGAG+AGG | 0.701754 | tig0022499:+57492 | Msa1401070:CDS |
ATAAGCGGTGATGTAAACGG+TGG | 0.756884 | tig0022499:+60693 | Msa1401070:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTCTTTTTTTAATTAATTAA+AGG | + | tig0022499:57127-57146 | Msa1401070:intron | 10.0% |
!! | GTTAAAATTACAAAAATAAA+TGG | - | tig0022499:60518-60537 | None:intergenic | 10.0% |
!!! | TTTATTTTTGTAATTTTAAC+AGG | + | tig0022499:60518-60537 | Msa1401070:intron | 10.0% |
!! | ATATTTATTTAAAGGAAAGT+TGG | - | tig0022499:56783-56802 | None:intergenic | 15.0% |
!! | CTTTAAATAAATATATCCAA+CGG | + | tig0022499:56789-56808 | Msa1401070:five_prime_UTR | 15.0% |
!!! | TTAACTGTTTGATTTAATTA+TGG | + | tig0022499:57160-57179 | Msa1401070:intron | 15.0% |
!!! | TTGTTATTAATGTTGTAAAA+AGG | + | tig0022499:58597-58616 | Msa1401070:intron | 15.0% |
!! | TTGATCTAATCTTATAATAA+AGG | - | tig0022499:59003-59022 | None:intergenic | 15.0% |
!! | ACAATGTTTATTGTATTATT+TGG | + | tig0022499:59558-59577 | Msa1401070:CDS | 15.0% |
!! | TTAATTTATACTGTATTTAC+AGG | + | tig0022499:59766-59785 | Msa1401070:intron | 15.0% |
!! | TATATCGAAATTATAAAAGT+TGG | - | tig0022499:60154-60173 | None:intergenic | 15.0% |
!!! | TTGATTTTTGTAATAATAAG+CGG | + | tig0022499:60678-60697 | Msa1401070:exon | 15.0% |
!! | CGTTGGATATATTTATTTAA+AGG | - | tig0022499:56791-56810 | None:intergenic | 20.0% |
!!! | ATTGTTACCTTTTTTGTAAT+TGG | - | tig0022499:57308-57327 | None:intergenic | 20.0% |
!! | TACAAAAAAGGTAACAATTA+AGG | + | tig0022499:57310-57329 | Msa1401070:intron | 20.0% |
!!! | ATTTTTAACCACAATAGTAT+CGG | - | tig0022499:57438-57457 | None:intergenic | 20.0% |
!!! | ATTTTTTGAGATTGTTAGTT+TGG | + | tig0022499:57615-57634 | Msa1401070:intron | 20.0% |
!!! | TTTTTTGAGATTGTTAGTTT+GGG | + | tig0022499:57616-57635 | Msa1401070:intron | 20.0% |
!! | TAAGCATATAAATCATAATG+AGG | - | tig0022499:57944-57963 | None:intergenic | 20.0% |
!! | TAATAGTTAGAATACAGTAT+GGG | + | tig0022499:58146-58165 | Msa1401070:intron | 20.0% |
!! | AATGAAATAAAAATGCATGA+GGG | - | tig0022499:58306-58325 | None:intergenic | 20.0% |
!! | TAATGAAATAAAAATGCATG+AGG | - | tig0022499:58307-58326 | None:intergenic | 20.0% |
!! | AAATATATGTATATGTCTCT+CGG | + | tig0022499:58387-58406 | Msa1401070:intron | 20.0% |
!! | TTAGATAATCTGAATTGAAA+AGG | - | tig0022499:58417-58436 | None:intergenic | 20.0% |
!! | TATTATAAGATTAGATCAAG+TGG | + | tig0022499:59004-59023 | Msa1401070:CDS | 20.0% |
!! | ATGTTTATTGTATTATTTGG+AGG | + | tig0022499:59561-59580 | Msa1401070:CDS | 20.0% |
!!! | AAATACTTCAAACCTTTTTT+TGG | + | tig0022499:59978-59997 | Msa1401070:intron | 20.0% |
!!! | AATACTTCAAACCTTTTTTT+GGG | + | tig0022499:59979-59998 | Msa1401070:intron | 20.0% |
!!! | CGATATATTACAGTTAATTT+TGG | + | tig0022499:60167-60186 | Msa1401070:intron | 20.0% |
!!! | TATATTACAGTTAATTTTGG+TGG | + | tig0022499:60170-60189 | Msa1401070:intron | 20.0% |
!!! | TTGTACTTTTTAATAAGTTG+TGG | + | tig0022499:60253-60272 | Msa1401070:intron | 20.0% |
!!! | TTTTGTAATTTTAACAGGTT+AGG | + | tig0022499:60523-60542 | Msa1401070:intron | 20.0% |
!! | TTATTCTTTCAAAATCTAGT+TGG | + | tig0022499:60846-60865 | Msa1401070:three_prime_UTR | 20.0% |
! | AAGAAAGAAAAATACTGACA+CGG | - | tig0022499:57104-57123 | None:intergenic | 25.0% |
! | AACATGACCAATTACAAAAA+AGG | + | tig0022499:57298-57317 | Msa1401070:CDS | 25.0% |
!!! | GTTTTCTTCTTGTTGATTAT+TGG | + | tig0022499:57368-57387 | Msa1401070:intron | 25.0% |
!!! | TTGATGATCTTTTCAAATGT+CGG | + | tig0022499:57459-57478 | Msa1401070:CDS | 25.0% |
! | AAAACTACTAAATCTTACAC+CGG | + | tig0022499:57581-57600 | Msa1401070:CDS | 25.0% |
!!! | CAAAAAATTGTTTTTACCTC+CGG | - | tig0022499:57603-57622 | None:intergenic | 25.0% |
! | GTAATAGTTAGAATACAGTA+TGG | + | tig0022499:58145-58164 | Msa1401070:intron | 25.0% |
! | ATCTATATCAGTATTCTCAA+AGG | + | tig0022499:58178-58197 | Msa1401070:intron | 25.0% |
! | AGTATTCTCAAAGGATTTAT+CGG | + | tig0022499:58187-58206 | Msa1401070:intron | 25.0% |
!!! | TATCTCAGTGTCTTATTTTT+AGG | + | tig0022499:58246-58265 | Msa1401070:intron | 25.0% |
!!! | ATCTCAGTGTCTTATTTTTA+GGG | + | tig0022499:58247-58266 | Msa1401070:intron | 25.0% |
! | ATGAAATAAAAATGCATGAG+GGG | - | tig0022499:58305-58324 | None:intergenic | 25.0% |
! | CATTAATAACAAACCAAAAG+AGG | - | tig0022499:58589-58608 | None:intergenic | 25.0% |
!! | TTTTGTCACAAGATTTAACT+GGG | - | tig0022499:58649-58668 | None:intergenic | 25.0% |
!! | GAAAATAGTCATTAGGATTT+TGG | - | tig0022499:58761-58780 | None:intergenic | 25.0% |
! | TTCACAAGAAAATAGTCATT+AGG | - | tig0022499:58768-58787 | None:intergenic | 25.0% |
! | TAGAATAATAAAGCACAGAA+TGG | - | tig0022499:58807-58826 | None:intergenic | 25.0% |
!! | CATATTAAGATTTGTTTCGA+TGG | + | tig0022499:59363-59382 | Msa1401070:intron | 25.0% |
!! | GTTATCTTCATTTGGTTTAT+CGG | + | tig0022499:59583-59602 | Msa1401070:CDS | 25.0% |
!!! | ATACTTCAAACCTTTTTTTG+GGG | + | tig0022499:59980-59999 | Msa1401070:intron | 25.0% |
! | TTGTGATTCAACATTTAAAG+AGG | + | tig0022499:60100-60119 | Msa1401070:intron | 25.0% |
! | AAAATCAACATATGAAACAC+AGG | - | tig0022499:60666-60685 | None:intergenic | 25.0% |
! | TAGAACAACAATACAAATCT+AGG | - | tig0022499:60750-60769 | None:intergenic | 25.0% |
! | CTAGTTGAAGATGTAAATAA+AGG | + | tig0022499:60767-60786 | Msa1401070:three_prime_UTR | 25.0% |
! | ATGTATCATTGTATTTGCTT+AGG | + | tig0022499:60801-60820 | Msa1401070:three_prime_UTR | 25.0% |
! | GCATACGTTACTCTTTTATA+CGG | + | tig0022499:56961-56980 | Msa1401070:CDS | 30.0% |
ATACGGAGATGAATTCTTAT+TGG | + | tig0022499:56978-56997 | Msa1401070:CDS | 30.0% | |
TACGGAGATGAATTCTTATT+GGG | + | tig0022499:56979-56998 | Msa1401070:CDS | 30.0% | |
CAAAACAACCATGTGTTTAT+TGG | - | tig0022499:57043-57062 | None:intergenic | 30.0% | |
! | CAATAAACACATGGTTGTTT+TGG | + | tig0022499:57041-57060 | Msa1401070:CDS | 30.0% |
! | TCTTCTTGTTGATTATTGGT+TGG | + | tig0022499:57372-57391 | Msa1401070:intron | 30.0% |
TCGTTAAAAAGAGTTTCAGA+TGG | - | tig0022499:57545-57564 | None:intergenic | 30.0% | |
! | TGAAACTCTTTTTAACGACA+TGG | + | tig0022499:57547-57566 | Msa1401070:CDS | 30.0% |
ACATTGTATAATGCAGATGT+TGG | + | tig0022499:57798-57817 | Msa1401070:CDS | 30.0% | |
TTAAGTAATTAGAGTCACTG+AGG | + | tig0022499:57891-57910 | Msa1401070:intron | 30.0% | |
GTTTAGATAGAATGTATGCT+AGG | + | tig0022499:57974-57993 | Msa1401070:intron | 30.0% | |
ATTTGCCTAATGGCTAAAAA+TGG | + | tig0022499:58051-58070 | Msa1401070:intron | 30.0% | |
CTAACTATTACAGACAATAC+CGG | - | tig0022499:58136-58155 | None:intergenic | 30.0% | |
! | CTTTTGTCACAAGATTTAAC+TGG | - | tig0022499:58650-58669 | None:intergenic | 30.0% |
ATAATAAAGCACAGAATGGT+AGG | - | tig0022499:58803-58822 | None:intergenic | 30.0% | |
CTGCTATAATTCACTTATGA+AGG | + | tig0022499:58827-58846 | Msa1401070:CDS | 30.0% | |
ATGTGCTTAATGCTTGAAAT+TGG | - | tig0022499:58884-58903 | None:intergenic | 30.0% | |
ATTTCAAGCATTAAGCACAT+AGG | + | tig0022499:58884-58903 | Msa1401070:intron | 30.0% | |
TTTCAAGCATTAAGCACATA+GGG | + | tig0022499:58885-58904 | Msa1401070:intron | 30.0% | |
!! | TACTTTGGTTCATTTTGTAG+AGG | + | tig0022499:58953-58972 | Msa1401070:CDS | 30.0% |
GATGTTGAGATAGTTGTATA+AGG | - | tig0022499:59037-59056 | None:intergenic | 30.0% | |
TATACAACTATCTCAACATC+AGG | + | tig0022499:59037-59056 | Msa1401070:CDS | 30.0% | |
TCTACCTCATCAAAATCAAA+TGG | - | tig0022499:59148-59167 | None:intergenic | 30.0% | |
ATGTCATGGATTCAAATAAC+AGG | + | tig0022499:59292-59311 | Msa1401070:intron | 30.0% | |
!! | TTCTGTCTGTTTCTGTTTAA+CGG | + | tig0022499:59443-59462 | Msa1401070:CDS | 30.0% |
!! | GTTTGCTTTTGATGTATGAA+TGG | + | tig0022499:59529-59548 | Msa1401070:CDS | 30.0% |
ATTTGGAGGTTATCTTCATT+TGG | + | tig0022499:59575-59594 | Msa1401070:CDS | 30.0% | |
!!! | CAAGAGTAAAGCTTATTTTG+TGG | + | tig0022499:59688-59707 | Msa1401070:intron | 30.0% |
!!! | GAATAACTGCCTTGTTTTTA+AGG | + | tig0022499:59890-59909 | Msa1401070:CDS | 30.0% |
AATTCGCGTTCTAATGTATT+AGG | + | tig0022499:59914-59933 | Msa1401070:intron | 30.0% | |
! | GAAATTTTCACCCCAAAAAA+AGG | - | tig0022499:59993-60012 | None:intergenic | 30.0% |
AAAACAGTACATGTGTATAG+AGG | - | tig0022499:60196-60215 | None:intergenic | 30.0% | |
! | CTATACACATGTACTGTTTT+CGG | + | tig0022499:60196-60215 | Msa1401070:intron | 30.0% |
CTTTCACATTACATCTCTTA+GGG | - | tig0022499:60323-60342 | None:intergenic | 30.0% | |
! | TTTTAACAGGTTAGGTTTGA+TGG | + | tig0022499:60531-60550 | Msa1401070:intron | 30.0% |
ATAATAAGCGGTGATGTAAA+CGG | + | tig0022499:60690-60709 | Msa1401070:three_prime_UTR | 30.0% | |
ATATATCCAACGGAAACAAG+AGG | + | tig0022499:56799-56818 | Msa1401070:five_prime_UTR | 35.0% | |
TATATCCAACGGAAACAAGA+GGG | + | tig0022499:56800-56819 | Msa1401070:five_prime_UTR | 35.0% | |
AACCAAACAGTAGAATCAGT+TGG | + | tig0022499:56854-56873 | Msa1401070:CDS | 35.0% | |
! | CTTCAATTCGAACCTTGTTT+AGG | + | tig0022499:56916-56935 | Msa1401070:CDS | 35.0% |
TTGTAAGATCCTCCTAAACA+AGG | - | tig0022499:56931-56950 | None:intergenic | 35.0% | |
AACCATGTGTTTATTGGATC+TGG | - | tig0022499:57037-57056 | None:intergenic | 35.0% | |
! | TTATGGTTTTTGTGTGTTGC+AGG | + | tig0022499:57177-57196 | Msa1401070:intron | 35.0% |
! | TGTTCGTCCTAAGAGATTTT+GGG | + | tig0022499:57249-57268 | Msa1401070:CDS | 35.0% |
TAAACACCCCAAAATCTCTT+AGG | - | tig0022499:57259-57278 | None:intergenic | 35.0% | |
! | CTAATTTGAAGCATTCTGAG+AGG | + | tig0022499:57492-57511 | Msa1401070:CDS | 35.0% |
AAGAAACACAGTTGAAGACA+AGG | - | tig0022499:57649-57668 | None:intergenic | 35.0% | |
ATTGGGAAAGTCAGAGTAAT+AGG | - | tig0022499:57703-57722 | None:intergenic | 35.0% | |
ATTACTTAAGTTACGACACG+AGG | - | tig0022499:57880-57899 | None:intergenic | 35.0% | |
CATTAGGCAAATGTAACTGT+GGG | - | tig0022499:58043-58062 | None:intergenic | 35.0% | |
!!! | CAATGCCATTTTTAGCCATT+AGG | - | tig0022499:58059-58078 | None:intergenic | 35.0% |
ATTCTCAAAGGATTTATCGG+TGG | + | tig0022499:58190-58209 | Msa1401070:intron | 35.0% | |
!!! | TTATTTTTAGGGCACCTTGT+CGG | + | tig0022499:58258-58277 | Msa1401070:intron | 35.0% |
!!! | TTTTGAAACCTGTTGATGTC+TGG | + | tig0022499:58552-58571 | Msa1401070:CDS | 35.0% |
TGACGTATTTCTTCTTACCT+TGG | + | tig0022499:58675-58694 | Msa1401070:intron | 35.0% | |
GTATTTCTTCTTACCTTGGT+GGG | + | tig0022499:58679-58698 | Msa1401070:intron | 35.0% | |
TATTTCTTCTTACCTTGGTG+GGG | + | tig0022499:58680-58699 | Msa1401070:intron | 35.0% | |
GAGATAGTTGTATAAGGAAG+TGG | - | tig0022499:59031-59050 | None:intergenic | 35.0% | |
AGGAATCAATTCAATCCATC+AGG | + | tig0022499:59057-59076 | Msa1401070:CDS | 35.0% | |
ATCAATTCAATCCATCAGGT+TGG | + | tig0022499:59061-59080 | Msa1401070:intron | 35.0% | |
! | GATGATCCAAATCTAAAACC+AGG | - | tig0022499:59099-59118 | None:intergenic | 35.0% |
GATTTGGATCATCTCATTTG+AGG | + | tig0022499:59106-59125 | Msa1401070:intron | 35.0% | |
CAAATGGCTAGATCATATGA+AGG | - | tig0022499:59132-59151 | None:intergenic | 35.0% | |
!! | CTAGCCATTTGATTTTGATG+AGG | + | tig0022499:59141-59160 | Msa1401070:intron | 35.0% |
ACTACTATCATCAAATGACC+TGG | + | tig0022499:59258-59277 | Msa1401070:intron | 35.0% | |
! | ATCTTCATTTGGTTTATCGG+TGG | + | tig0022499:59586-59605 | Msa1401070:CDS | 35.0% |
! | TCTTCATTTGGTTTATCGGT+GGG | + | tig0022499:59587-59606 | Msa1401070:CDS | 35.0% |
GAATCATAATCCAAAGACTC+AGG | - | tig0022499:59651-59670 | None:intergenic | 35.0% | |
GAGTCTTTGGATTATGATTC+TGG | + | tig0022499:59651-59670 | Msa1401070:CDS | 35.0% | |
! | CTACATGGTACTATGGATTA+GGG | + | tig0022499:59821-59840 | Msa1401070:CDS | 35.0% |
GCAGTTATTCCAAAAAGACA+AGG | - | tig0022499:59880-59899 | None:intergenic | 35.0% | |
CGCGAATTACCTTAAAAACA+AGG | - | tig0022499:59902-59921 | None:intergenic | 35.0% | |
TCTTAGGGAATTCAAATGAG+TGG | - | tig0022499:60308-60327 | None:intergenic | 35.0% | |
CCTTTCACATTACATCTCTT+AGG | - | tig0022499:60324-60343 | None:intergenic | 35.0% | |
CCTAAGAGATGTAATGTGAA+AGG | + | tig0022499:60321-60340 | Msa1401070:intron | 35.0% | |
!!! | GAAAGGTTTTAAGCTTGCAT+TGG | + | tig0022499:60338-60357 | Msa1401070:intron | 35.0% |
!! | GTTTTAAGCTTGCATTGGAA+AGG | + | tig0022499:60343-60362 | Msa1401070:intron | 35.0% |
AGGCTAAAAATCAGTTTGAG+TGG | + | tig0022499:60363-60382 | Msa1401070:intron | 35.0% | |
AGAATTGAGAGAAAAGGGAA+AGG | - | tig0022499:60394-60413 | None:intergenic | 35.0% | |
CACTGAGAATTGAGAGAAAA+GGG | - | tig0022499:60399-60418 | None:intergenic | 35.0% | |
ACACTGAGAATTGAGAGAAA+AGG | - | tig0022499:60400-60419 | None:intergenic | 35.0% | |
! | CTTTGCATCAGAGATTTGTT+TGG | + | tig0022499:60480-60499 | Msa1401070:intron | 35.0% |
! | ATTATCCCTCTTGTTTCCGT+TGG | - | tig0022499:56808-56827 | None:intergenic | 40.0% |
! | CAATTCGAACCTTGTTTAGG+AGG | + | tig0022499:56919-56938 | Msa1401070:CDS | 40.0% |
CACCAGATCCAATAAACACA+TGG | + | tig0022499:57032-57051 | Msa1401070:CDS | 40.0% | |
!!! | ATGGTTGTTTTGGTCTCTGA+TGG | + | tig0022499:57051-57070 | Msa1401070:CDS | 40.0% |
!!! | GAGAAGGTTTTTGGCGAAAT+TGG | - | tig0022499:57082-57101 | None:intergenic | 40.0% |
GAAAAATACTGACACGGAGA+AGG | - | tig0022499:57098-57117 | None:intergenic | 40.0% | |
! | GTGTTCGTCCTAAGAGATTT+TGG | + | tig0022499:57248-57267 | Msa1401070:CDS | 40.0% |
! | GTTCGTCCTAAGAGATTTTG+GGG | + | tig0022499:57250-57269 | Msa1401070:CDS | 40.0% |
! | CATTCTGAGAGGTTGAATTC+CGG | + | tig0022499:57503-57522 | Msa1401070:CDS | 40.0% |
ACTACTAAATCTTACACCGG+AGG | + | tig0022499:57584-57603 | Msa1401070:CDS | 40.0% | |
! | ACTGTGTTTCTTCCTTTTGC+AGG | + | tig0022499:57657-57676 | Msa1401070:intron | 40.0% |
GGATCAAAAACACGTGCATT+GGG | - | tig0022499:57720-57739 | None:intergenic | 40.0% | |
TGGATCAAAAACACGTGCAT+TGG | - | tig0022499:57721-57740 | None:intergenic | 40.0% | |
TCTGGATTTCAACTCTTCTG+GGG | - | tig0022499:57751-57770 | None:intergenic | 40.0% | |
GTCTGGATTTCAACTCTTCT+GGG | - | tig0022499:57752-57771 | None:intergenic | 40.0% | |
!! | GTTGATAGTCTCTCCATTTC+CGG | - | tig0022499:57780-57799 | None:intergenic | 40.0% |
TCTTTACATGCTCGCTAACA+AGG | + | tig0022499:57821-57840 | Msa1401070:CDS | 40.0% | |
GGGATTCTCTCAAACAAGTT+AGG | - | tig0022499:58023-58042 | None:intergenic | 40.0% | |
CCATTAGGCAAATGTAACTG+TGG | - | tig0022499:58044-58063 | None:intergenic | 40.0% | |
CCACAGTTACATTTGCCTAA+TGG | + | tig0022499:58041-58060 | Msa1401070:intron | 40.0% | |
GTGTTCTATGTCCTATTGAC+CGG | + | tig0022499:58114-58133 | Msa1401070:intron | 40.0% | |
TACAGACAATACCGGTCAAT+AGG | - | tig0022499:58128-58147 | None:intergenic | 40.0% | |
CACTGAGATAAAATCTCCAC+AGG | - | tig0022499:58236-58255 | None:intergenic | 40.0% | |
CCAGTGTATAGTGAATCACA+CGG | - | tig0022499:58496-58515 | None:intergenic | 40.0% | |
CGTGTGATTCACTATACACT+GGG | + | tig0022499:58494-58513 | Msa1401070:CDS | 40.0% | |
! | GGCAGGTAATTATCCTCTTT+TGG | + | tig0022499:58573-58592 | Msa1401070:intron | 40.0% |
CGTATTTCTTCTTACCTTGG+TGG | + | tig0022499:58678-58697 | Msa1401070:intron | 40.0% | |
ATAGGGCTTCGAATAAGTCT+TGG | + | tig0022499:58902-58921 | Msa1401070:intron | 40.0% | |
!! | TTGCAGAATCGAGAGTACTT+TGG | + | tig0022499:58938-58957 | Msa1401070:intron | 40.0% |
!!! | CAGTCTCCTGGTTTTAGATT+TGG | + | tig0022499:59090-59109 | Msa1401070:intron | 40.0% |
CAAACACAACGCCTTGTATA+AGG | + | tig0022499:59168-59187 | Msa1401070:intron | 40.0% | |
!! | ATTTTGGGAGGCCTTATACA+AGG | - | tig0022499:59182-59201 | None:intergenic | 40.0% |
CTCCCAAAATCTCTTGTACA+GGG | + | tig0022499:59192-59211 | Msa1401070:intron | 40.0% | |
TCCTGTACATGAGAAGAACA+CGG | - | tig0022499:59220-59239 | None:intergenic | 40.0% | |
ATGACATGACAACATTGACC+AGG | - | tig0022499:59279-59298 | None:intergenic | 40.0% | |
TGGTCAATGTTGTCATGTCA+TGG | + | tig0022499:59278-59297 | Msa1401070:intron | 40.0% | |
AAGTATGCAAGTCCAACTAG+AGG | - | tig0022499:59326-59345 | None:intergenic | 40.0% | |
TGCAAGGTTCCTACCTATTT+GGG | + | tig0022499:59414-59433 | Msa1401070:CDS | 40.0% | |
ATCAAAAGCAAACCAGTCCA+CGG | - | tig0022499:59522-59541 | None:intergenic | 40.0% | |
! | CTTCATTTGGTTTATCGGTG+GGG | + | tig0022499:59588-59607 | Msa1401070:CDS | 40.0% |
GCTACATGGTACTATGGATT+AGG | + | tig0022499:59820-59839 | Msa1401070:CDS | 40.0% | |
!! | ATGGTACTATGGATTAGGGA+TGG | + | tig0022499:59825-59844 | Msa1401070:CDS | 40.0% |
CCAAAAAGACAAGGCAAAGA+TGG | - | tig0022499:59871-59890 | None:intergenic | 40.0% | |
! | CCATCTTTGCCTTGTCTTTT+TGG | + | tig0022499:59868-59887 | Msa1401070:CDS | 40.0% |
GTCTACTCTGATGTGATTCT+AGG | - | tig0022499:60430-60449 | None:intergenic | 40.0% | |
! | AGGTTAGGTTTGATGGTTGT+CGG | + | tig0022499:60538-60557 | Msa1401070:intron | 40.0% |
! | CTTCTGAACATCTTGCTATC+CGG | + | tig0022499:60593-60612 | Msa1401070:CDS | 40.0% |
!! | CAAGTCCTTTTAGGAATGAC+CGG | - | tig0022499:60615-60634 | None:intergenic | 40.0% |
TCCTAAAAGGACTTGATGAG+TGG | + | tig0022499:60620-60639 | Msa1401070:CDS | 40.0% | |
CCTAAAAGGACTTGATGAGT+GGG | + | tig0022499:60621-60640 | Msa1401070:CDS | 40.0% | |
AGTGGGATATTGCTCCAAAT+AGG | + | tig0022499:60638-60657 | Msa1401070:CDS | 40.0% | |
ATGAAACACAGGCTCCTATT+TGG | - | tig0022499:60655-60674 | None:intergenic | 40.0% | |
TTTCAGTCGTCTCTGACCTT+CGG | - | tig0022499:56714-56733 | None:intergenic | 45.0% | |
! | CGCCAACTGATTCTACTGTT+TGG | - | tig0022499:56859-56878 | None:intergenic | 45.0% |
TTATTGGGCGTTCGTGTTCT+CGG | + | tig0022499:56994-57013 | Msa1401070:CDS | 45.0% | |
! | ACTGACACGGAGAAGGTTTT+TGG | - | tig0022499:57091-57110 | None:intergenic | 45.0% |
! | TTTTGTGTGTTGCAGGCTGA+TGG | + | tig0022499:57184-57203 | Msa1401070:intron | 45.0% |
AGGACGAACACGATTAGGAT+TGG | - | tig0022499:57239-57258 | None:intergenic | 45.0% | |
CTCTTAGGACGAACACGATT+AGG | - | tig0022499:57244-57263 | None:intergenic | 45.0% | |
GAGGTTGAATTCCGGAGTTA+TGG | + | tig0022499:57511-57530 | Msa1401070:CDS | 45.0% | |
GTTGAATTCCGGAGTTATGG+TGG | + | tig0022499:57514-57533 | Msa1401070:CDS | 45.0% | |
! | TCTTCCTTTTGCAGGAGATC+AGG | + | tig0022499:57665-57684 | Msa1401070:intron | 45.0% |
! | CTTCCTTTTGCAGGAGATCA+GGG | + | tig0022499:57666-57685 | Msa1401070:intron | 45.0% |
AATCCCTGATCTCCTGCAAA+AGG | - | tig0022499:57672-57691 | None:intergenic | 45.0% | |
! | AACTCTTCTGGGGACAAGTT+TGG | - | tig0022499:57741-57760 | None:intergenic | 45.0% |
GGTCTGGATTTCAACTCTTC+TGG | - | tig0022499:57753-57772 | None:intergenic | 45.0% | |
GTTGAAATCCAGACCTGTTC+CGG | + | tig0022499:57758-57777 | Msa1401070:CDS | 45.0% | |
ACATGCTCGCTAACAAGGTA+CGG | + | tig0022499:57826-57845 | Msa1401070:intron | 45.0% | |
GCTAACAAGGTACGGAGTAT+AGG | + | tig0022499:57834-57853 | Msa1401070:intron | 45.0% | |
!! | TACGGAGTATAGGTACTGAG+AGG | + | tig0022499:57844-57863 | Msa1401070:intron | 45.0% |
!! | GAGTATAGGTACTGAGAGGA+TGG | + | tig0022499:57848-57867 | Msa1401070:intron | 45.0% |
GTTCATGCTGATCTATCCAG+TGG | + | tig0022499:58450-58469 | Msa1401070:intron | 45.0% | |
ATGCTGATCTATCCAGTGGA+TGG | + | tig0022499:58454-58473 | Msa1401070:intron | 45.0% | |
CTTTCTCATCTACCATCCAC+TGG | - | tig0022499:58469-58488 | None:intergenic | 45.0% | |
CCGTGTGATTCACTATACAC+TGG | + | tig0022499:58493-58512 | Msa1401070:CDS | 45.0% | |
ATTACCTGCCAGACATCAAC+AGG | - | tig0022499:58563-58582 | None:intergenic | 45.0% | |
CTGGGTAGACATGATTGCTT+CGG | - | tig0022499:58631-58650 | None:intergenic | 45.0% | |
TGGGGTTCTTCAGGATGTTA+GGG | + | tig0022499:58698-58717 | Msa1401070:intron | 45.0% | |
AGGATGTTAGGGAACAGCTT+GGG | + | tig0022499:58709-58728 | Msa1401070:intron | 45.0% | |
! | GTGCCTGACTTGATCACATA+GGG | - | tig0022499:58981-59000 | None:intergenic | 45.0% |
GACTGAGAAAACCAACCTGA+TGG | - | tig0022499:59075-59094 | None:intergenic | 45.0% | |
! | CCTGTACAAGAGATTTTGGG+AGG | - | tig0022499:59194-59213 | None:intergenic | 45.0% |
CCTCCCAAAATCTCTTGTAC+AGG | + | tig0022499:59191-59210 | Msa1401070:intron | 45.0% | |
! | GGCCCTGTACAAGAGATTTT+GGG | - | tig0022499:59197-59216 | None:intergenic | 45.0% |
CTGTACATGAGAAGAACACG+GGG | - | tig0022499:59218-59237 | None:intergenic | 45.0% | |
CCTGTACATGAGAAGAACAC+GGG | - | tig0022499:59219-59238 | None:intergenic | 45.0% | |
CAGGATGCATAACCTCTAGT+TGG | + | tig0022499:59311-59330 | Msa1401070:intron | 45.0% | |
GTGCAAGGTTCCTACCTATT+TGG | + | tig0022499:59413-59432 | Msa1401070:CDS | 45.0% | |
AAGGTTCCTACCTATTTGGG+CGG | + | tig0022499:59417-59436 | Msa1401070:CDS | 45.0% | |
GAAATACCGCCCAAATAGGT+AGG | - | tig0022499:59426-59445 | None:intergenic | 45.0% | |
GACAGAAATACCGCCCAAAT+AGG | - | tig0022499:59430-59449 | None:intergenic | 45.0% | |
TTTCTGTTTAACGGCTGCTG+TGG | + | tig0022499:59452-59471 | Msa1401070:CDS | 45.0% | |
TAGCTCTCTTGATTGTTCCC+CGG | + | tig0022499:59487-59506 | Msa1401070:CDS | 45.0% | |
TTATCGGTGGGGAAAACATG+TGG | + | tig0022499:59599-59618 | Msa1401070:CDS | 45.0% | |
CATCATGTGATGCTGCTACA+TGG | + | tig0022499:59806-59825 | Msa1401070:CDS | 45.0% | |
GATGCTGCTACATGGTACTA+TGG | + | tig0022499:59814-59833 | Msa1401070:CDS | 45.0% | |
TGGGGTGAAAATTTCATCCG+TGG | + | tig0022499:59998-60017 | Msa1401070:intron | 45.0% | |
TTCATCCGTGGTTCCAAAAG+TGG | + | tig0022499:60010-60029 | Msa1401070:intron | 45.0% | |
!!! | AAGAGCCACTTTTGGAACCA+CGG | - | tig0022499:60018-60037 | None:intergenic | 45.0% |
!! | TGGCAACAAAGAGCCACTTT+TGG | - | tig0022499:60026-60045 | None:intergenic | 45.0% |
TGCCAGTGCATGTCTGTTAT+CGG | + | tig0022499:60041-60060 | Msa1401070:intron | 45.0% | |
! | GGTTAGGTTTGATGGTTGTC+GGG | + | tig0022499:60539-60558 | Msa1401070:intron | 45.0% |
! | GTTAGGTTTGATGGTTGTCG+GGG | + | tig0022499:60540-60559 | Msa1401070:CDS | 45.0% |
! | TTAGGTTTGATGGTTGTCGG+GGG | + | tig0022499:60541-60560 | Msa1401070:CDS | 45.0% |
GCTATCCGGTCATTCCTAAA+AGG | + | tig0022499:60607-60626 | Msa1401070:CDS | 45.0% | |
! | CCCACTCATCAAGTCCTTTT+AGG | - | tig0022499:60624-60643 | None:intergenic | 45.0% |
ATAAGCGGTGATGTAAACGG+TGG | + | tig0022499:60693-60712 | Msa1401070:three_prime_UTR | 45.0% | |
!!! | AAAATAATAAAATTTTAACA+TGG | + | tig0022499:60127-60146 | Msa1401070:intron | 5.0% |
!! | ATTGGATCTGGTGTCGCGTA+TGG | - | tig0022499:57025-57044 | None:intergenic | 50.0% |
!! | CCACAATAGTATCGGCATCG+AGG | - | tig0022499:57430-57449 | None:intergenic | 50.0% |
CCTCGATGCCGATACTATTG+TGG | + | tig0022499:57427-57446 | Msa1401070:CDS | 50.0% | |
ATCCAGACCTGTTCCGGAAA+TGG | + | tig0022499:57764-57783 | Msa1401070:CDS | 50.0% | |
AGTCTCTCCATTTCCGGAAC+AGG | - | tig0022499:57774-57793 | None:intergenic | 50.0% | |
GTGAGTAGCACAGATTCCTG+TGG | + | tig0022499:58217-58236 | Msa1401070:intron | 50.0% | |
ACTCGACAGCAATTCCGACA+AGG | - | tig0022499:58275-58294 | None:intergenic | 50.0% | |
GAAACCTGTTGATGTCTGGC+AGG | + | tig0022499:58556-58575 | Msa1401070:CDS | 50.0% | |
TTACCTTGGTGGGGTTCTTC+AGG | + | tig0022499:58689-58708 | Msa1401070:intron | 50.0% | |
GTGGGGTTCTTCAGGATGTT+AGG | + | tig0022499:58697-58716 | Msa1401070:intron | 50.0% | |
CAGGATGTTAGGGAACAGCT+TGG | + | tig0022499:58708-58727 | Msa1401070:intron | 50.0% | |
GGATGTTAGGGAACAGCTTG+GGG | + | tig0022499:58710-58729 | Msa1401070:intron | 50.0% | |
GCTCCCTATGTGATCAAGTC+AGG | + | tig0022499:58975-58994 | Msa1401070:CDS | 50.0% | |
! | GGTGCCTGACTTGATCACAT+AGG | - | tig0022499:58982-59001 | None:intergenic | 50.0% |
!!! | GGTTGGTTTTCTCAGTCTCC+TGG | + | tig0022499:59078-59097 | Msa1401070:intron | 50.0% |
! | GGGCCCTGTACAAGAGATTT+TGG | - | tig0022499:59198-59217 | None:intergenic | 50.0% |
CCCGTGTTCTTCTCATGTAC+AGG | + | tig0022499:59216-59235 | Msa1401070:intron | 50.0% | |
CTCGAATGGTTCTCAGTGCA+AGG | + | tig0022499:59398-59417 | Msa1401070:CDS | 50.0% | |
CAAAGACTCAGGAAGTGACG+AGG | - | tig0022499:59640-59659 | None:intergenic | 50.0% | |
CTCGTCACTTCCTGAGTCTT+TGG | + | tig0022499:59638-59657 | Msa1401070:CDS | 50.0% | |
!! | TGGATTAGGGATGGCCTTGT+TGG | + | tig0022499:59834-59853 | Msa1401070:CDS | 50.0% |
! | AGGCAAAGATGGAGCACCAA+TGG | - | tig0022499:59860-59879 | None:intergenic | 50.0% |
AGCCGATAACAGACATGCAC+TGG | - | tig0022499:60046-60065 | None:intergenic | 50.0% | |
GTGTGTTGCAGGCTGATGGT+TGG | + | tig0022499:57188-57207 | Msa1401070:intron | 55.0% | |
TGGCTCGACCACCATAACTC+CGG | - | tig0022499:57525-57544 | None:intergenic | 55.0% | |
CTCCATTTCCGGAACAGGTC+TGG | - | tig0022499:57769-57788 | None:intergenic | 55.0% | |
ACTGGGACCCCTTAAGCCTT+GGG | + | tig0022499:58511-58530 | Msa1401070:CDS | 55.0% | |
CACCAGTCCCAAGGCTTAAG+GGG | - | tig0022499:58521-58540 | None:intergenic | 55.0% | |
CCACCAGTCCCAAGGCTTAA+GGG | - | tig0022499:58522-58541 | None:intergenic | 55.0% | |
TCCACCAGTCCCAAGGCTTA+AGG | - | tig0022499:58523-58542 | None:intergenic | 55.0% | |
CAAGATGTCCACCAGTCCCA+AGG | - | tig0022499:58530-58549 | None:intergenic | 55.0% | |
! | CTTGGGACTGGTGGACATCT+TGG | + | tig0022499:58528-58547 | Msa1401070:CDS | 55.0% |
CATCCTGAAGAACCCCACCA+AGG | - | tig0022499:58695-58714 | None:intergenic | 55.0% | |
GAGTCCCTTCCTGGAACAAG+AGG | + | tig0022499:58732-58751 | Msa1401070:CDS | 55.0% | |
TCCCTTCCTGGAACAAGAGG+CGG | + | tig0022499:58735-58754 | Msa1401070:CDS | 55.0% | |
! | TTTTGGCCGCCTCTTGTTCC+AGG | - | tig0022499:58744-58763 | None:intergenic | 55.0% |
GGTGTCAAGCAGCTCTCGAA+TGG | + | tig0022499:59384-59403 | Msa1401070:CDS | 55.0% | |
! | TGGAGCACCAATGGCCAACA+AGG | - | tig0022499:59851-59870 | None:intergenic | 55.0% |
!! | GGTTGTCGGGGGCATCATAT+TGG | + | tig0022499:60552-60571 | Msa1401070:CDS | 55.0% |
CTCTGACCTTCGGTCACCAC+TGG | - | tig0022499:56704-56723 | None:intergenic | 60.0% | |
CACTGGGACCCCTTAAGCCT+TGG | + | tig0022499:58510-58529 | Msa1401070:CDS | 60.0% | |
GACCCCTTAAGCCTTGGGAC+TGG | + | tig0022499:58516-58535 | Msa1401070:CDS | 60.0% | |
CCCTTAAGCCTTGGGACTGG+TGG | + | tig0022499:58519-58538 | Msa1401070:CDS | 60.0% | |
GCCGCCTCTTGTTCCAGGAA+GGG | - | tig0022499:58739-58758 | None:intergenic | 60.0% | |
ACGGCTGCTGTGGTGTCTCT+TGG | + | tig0022499:59462-59481 | Msa1401070:CDS | 60.0% | |
AGTCCACGGCATCACTTGCC+GGG | - | tig0022499:59508-59527 | None:intergenic | 60.0% | |
CAGTCCACGGCATCACTTGC+CGG | - | tig0022499:59509-59528 | None:intergenic | 60.0% | |
!! | GGGATGGCCTTGTTGGCCAT+TGG | + | tig0022499:59841-59860 | Msa1401070:CDS | 60.0% |
AGATGCACGCACGCAGCCAG+TGG | + | tig0022499:56685-56704 | Msa1401070:five_prime_UTR | 65.0% | |
ACGCAGCCAGTGGTGACCGA+AGG | + | tig0022499:56695-56714 | Msa1401070:five_prime_UTR | 65.0% | |
CAGCTTGGGGAGTCCCTTCC+TGG | + | tig0022499:58723-58742 | Msa1401070:CDS | 65.0% | |
GGCCGCCTCTTGTTCCAGGA+AGG | - | tig0022499:58740-58759 | None:intergenic | 65.0% | |
TTCCCCGGCAAGTGATGCCG+TGG | + | tig0022499:59502-59521 | Msa1401070:CDS | 65.0% | |
GTCCACGGCATCACTTGCCG+GGG | - | tig0022499:59507-59526 | None:intergenic | 65.0% | |
CGGCAAGTGATGCCGTGGAC+TGG | + | tig0022499:59507-59526 | Msa1401070:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0022499 | gene | 56614 | 60879 | 56614 | ID=Msa1401070;Name=Msa1401070 |
tig0022499 | mRNA | 56614 | 60879 | 56614 | ID=Msa1401070-mRNA-1;Parent=Msa1401070;Name=Msa1401070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=236|0.88|0.9|1|1|1|10|198|559 |
tig0022499 | exon | 56614 | 57104 | 56614 | ID=Msa1401070-mRNA-1:exon:18070;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 57199 | 57319 | 57199 | ID=Msa1401070-mRNA-1:exon:18071;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 57420 | 57605 | 57420 | ID=Msa1401070-mRNA-1:exon:18072;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 57679 | 57842 | 57679 | ID=Msa1401070-mRNA-1:exon:18073;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 58470 | 58577 | 58470 | ID=Msa1401070-mRNA-1:exon:18074;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 58711 | 58848 | 58711 | ID=Msa1401070-mRNA-1:exon:18075;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 58944 | 59078 | 58944 | ID=Msa1401070-mRNA-1:exon:18076;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 59372 | 59678 | 59372 | ID=Msa1401070-mRNA-1:exon:18077;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 59788 | 59911 | 59788 | ID=Msa1401070-mRNA-1:exon:18078;Parent=Msa1401070-mRNA-1 |
tig0022499 | exon | 60540 | 60879 | 60540 | ID=Msa1401070-mRNA-1:exon:18079;Parent=Msa1401070-mRNA-1 |
tig0022499 | five_prime_UTR | 56614 | 56849 | 56614 | ID=Msa1401070-mRNA-1:five_prime_utr;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 56850 | 57104 | 56850 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 57199 | 57319 | 57199 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 57420 | 57605 | 57420 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 57679 | 57842 | 57679 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 58470 | 58577 | 58470 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 58711 | 58848 | 58711 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 58944 | 59078 | 58944 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 59372 | 59678 | 59372 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 59788 | 59911 | 59788 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | CDS | 60540 | 60681 | 60540 | ID=Msa1401070-mRNA-1:cds;Parent=Msa1401070-mRNA-1 |
tig0022499 | three_prime_UTR | 60682 | 60879 | 60682 | ID=Msa1401070-mRNA-1:three_prime_utr;Parent=Msa1401070-mRNA-1 |
Gene Sequence |
Protein sequence |