Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549690 | XP_013456357.1 | 96.863 | 255 | 8 | 0 | 1 | 255 | 1 | 255 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549690 | sp|P0DPD7|EFMT4_HUMAN | 34.016 | 244 | 152 | 3 | 14 | 250 | 14 | 255 | 2.52e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549690 | A0A072UMY8 | 96.863 | 255 | 8 | 0 | 1 | 255 | 1 | 255 | 0.0 | 522 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0549690 | Msa0605140 | 0.905504 | 4.001243e-80 | -8.615850e-47 |
| Msa0549690 | Msa0605200 | 0.923837 | 1.567620e-89 | -8.615850e-47 |
| Msa0549690 | Msa0646320 | 0.862637 | 4.400196e-64 | -8.615850e-47 |
| Msa0549690 | Msa1227350 | 0.805259 | 1.455300e-49 | -8.615850e-47 |
| Msa0549690 | Msa1446510 | 0.808384 | 3.180787e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549690 | MtrunA17_Chr4g0034381 | 96.863 | 255 | 8 | 0 | 1 | 255 | 1 | 255 | 0.0 | 522 |
| Msa0549690 | MtrunA17_Chr4g0020211 | 30.270 | 185 | 117 | 4 | 12 | 194 | 5 | 179 | 7.43e-26 | 102 |
| Msa0549690 | MtrunA17_Chr2g0297031 | 29.630 | 189 | 117 | 7 | 19 | 195 | 7 | 191 | 1.09e-19 | 85.5 |
| Msa0549690 | MtrunA17_Chr8g0378231 | 33.333 | 180 | 97 | 8 | 26 | 194 | 25 | 192 | 2.39e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549690 | AT4G34360.1 | 65.289 | 242 | 82 | 1 | 11 | 252 | 6 | 245 | 3.02e-122 | 348 |
| Msa0549690 | AT3G60910.1 | 28.972 | 214 | 140 | 4 | 20 | 231 | 13 | 216 | 1.74e-28 | 109 |
| Msa0549690 | AT3G17365.1 | 33.505 | 194 | 105 | 8 | 10 | 198 | 2 | 176 | 4.58e-25 | 99.8 |
| Msa0549690 | AT3G17365.2 | 28.700 | 223 | 115 | 9 | 10 | 198 | 2 | 214 | 1.26e-18 | 83.2 |
| Msa0549690 | AT2G31740.1 | 26.316 | 190 | 119 | 5 | 16 | 194 | 19 | 198 | 4.97e-15 | 74.7 |
| Msa0549690 | AT3G60910.2 | 27.439 | 164 | 108 | 3 | 69 | 231 | 1 | 154 | 8.55e-15 | 71.2 |
Find 81 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGTGACAGTTAAAT+AGG | 0.236024 | 4_1:+44871333 | None:intergenic |
| TACAAAAGTGACACTTAAAA+AGG | 0.260629 | 4_1:+44871369 | None:intergenic |
| GCAAAATCGTTTACTTTCTC+AGG | 0.281452 | 4_1:-44873616 | Msa0549690:CDS |
| ATATTTATCTCAATAACTTT+TGG | 0.294771 | 4_1:-44872525 | Msa0549690:CDS |
| TTGGACATAGTTTCGGGCTT+TGG | 0.296551 | 4_1:+44872597 | None:intergenic |
| ATTCATGCCAGCCACATTTC+AGG | 0.301834 | 4_1:-44872431 | Msa0549690:intron |
| GTTGAATGATGTGACGAAAA+TGG | 0.306994 | 4_1:+44873769 | None:intergenic |
| AAATCCGGTGCATTAAATAT+AGG | 0.331855 | 4_1:+44872405 | None:intergenic |
| GGCACTTCAATCTTCTTAAC+AGG | 0.339241 | 4_1:+44871506 | None:intergenic |
| AAGCTCGAGTACAGAGGAAT+TGG | 0.341672 | 4_1:+44873734 | None:intergenic |
| AATACCAGTAAGAAGGATTA+AGG | 0.357541 | 4_1:+44873923 | None:intergenic |
| CGTACCTTAATCCTTCTTAC+TGG | 0.358053 | 4_1:-44873927 | Msa0549690:intron |
| CATGACCTTGGACATAGTTT+CGG | 0.360959 | 4_1:+44872590 | None:intergenic |
| TCTGTTGAGTGGACAACTTT+TGG | 0.374812 | 4_1:-44872375 | Msa0549690:CDS |
| ATTGAGATAAATATGCCATT+TGG | 0.404045 | 4_1:+44872534 | None:intergenic |
| AGAGGAATTGGGTGTGAGAT+GGG | 0.404822 | 4_1:+44873746 | None:intergenic |
| CTCTCCACAATAAATAACTA+AGG | 0.415475 | 4_1:+44871076 | None:intergenic |
| CTCTCCACAATAAATAACTA+AGG | 0.415475 | 4_1:+44871272 | None:intergenic |
| GGTTATCGAGAAAGGAACTA+TGG | 0.416741 | 4_1:-44872787 | Msa0549690:intron |
| ATGACCTTGGACATAGTTTC+GGG | 0.418705 | 4_1:+44872591 | None:intergenic |
| AATCCGGTGCATTAAATATA+GGG | 0.420986 | 4_1:+44872406 | None:intergenic |
| GTTTCGGGCTTTGGATTCCA+TGG | 0.425961 | 4_1:+44872606 | None:intergenic |
| TTTGATTTGGTTATCGAGAA+AGG | 0.436453 | 4_1:-44872795 | Msa0549690:CDS |
| GCTACAGTTGCCGTTGTCGT+CGG | 0.450317 | 4_1:+44873967 | None:intergenic |
| CTACAGTTGCCGTTGTCGTC+GGG | 0.455982 | 4_1:+44873968 | None:intergenic |
| CTTCACTTTCTAACTCCTCA+TGG | 0.461373 | 4_1:+44871468 | None:intergenic |
| CAGAGGAATTGGGTGTGAGA+TGG | 0.462348 | 4_1:+44873745 | None:intergenic |
| CCTAGCGCCGCCGGACAAAA+CGG | 0.470816 | 4_1:+44874019 | None:intergenic |
| TTGAATGATGTGACGAAAAT+GGG | 0.471196 | 4_1:+44873770 | None:intergenic |
| TAAATAACTAAGGGTAATGT+TGG | 0.475763 | 4_1:+44871086 | None:intergenic |
| TTCTCTCTTTCAGGGATGAG+AGG | 0.477120 | 4_1:-44873833 | Msa0549690:intron |
| AATTCCTCTGTACTCGAGCT+TGG | 0.483015 | 4_1:-44873732 | Msa0549690:CDS |
| CCACATTGAAAGGTGTTCAC+AGG | 0.484252 | 4_1:-44872566 | Msa0549690:CDS |
| TTGTCCGGCGGCGCTAGGGT+TGG | 0.496171 | 4_1:-44874014 | Msa0549690:five_prime_UTR |
| GGAGTATAATTTAGAGACGG+AGG | 0.496806 | 4_1:+44871203 | None:intergenic |
| TTTGAACAGCAACATGAGAA+AGG | 0.496949 | 4_1:+44873643 | None:intergenic |
| AGCTCGAGTACAGAGGAATT+GGG | 0.499953 | 4_1:+44873735 | None:intergenic |
| TTAATGCACCGGATTTCAGC+TGG | 0.501862 | 4_1:-44872398 | Msa0549690:CDS |
| TCTGTACTCGAGCTTGGATG+TGG | 0.506204 | 4_1:-44873726 | Msa0549690:CDS |
| TTACCCTTAGTTATTTATTG+TGG | 0.506382 | 4_1:-44871080 | Msa0549690:three_prime_UTR |
| TTACCCTTAGTTATTTATTG+TGG | 0.506382 | 4_1:-44871276 | Msa0549690:three_prime_UTR |
| TCAACAGACCAGCTGAAATC+CGG | 0.509055 | 4_1:+44872390 | None:intergenic |
| CACATTGAAAGGTGTTCACA+GGG | 0.510309 | 4_1:-44872565 | Msa0549690:CDS |
| AAGGTCAATGCAAGTAATGT+TGG | 0.513041 | 4_1:+44873662 | None:intergenic |
| TTTCAATGTGGACATGACCT+TGG | 0.513884 | 4_1:+44872578 | None:intergenic |
| TTTGAAGGATGTATTGTTCG+TGG | 0.515742 | 4_1:-44872640 | Msa0549690:intron |
| CAAAATCGTTTACTTTCTCA+GGG | 0.517884 | 4_1:-44873615 | Msa0549690:CDS |
| CTGCACTCAGTTGGACAAAA+CGG | 0.518983 | 4_1:+44874057 | None:intergenic |
| TCAAAACACTCATCGTCAAA+AGG | 0.520279 | 4_1:+44872813 | None:intergenic |
| TTACTTTCTCAGGGATTCAA+AGG | 0.522486 | 4_1:-44873606 | Msa0549690:intron |
| ACTTCCAACCCTAGCGCCGC+CGG | 0.524672 | 4_1:+44874010 | None:intergenic |
| ATTTCAGCTGGTCTGTTGAG+TGG | 0.525474 | 4_1:-44872386 | Msa0549690:CDS |
| GAGTATAATTTAGAGACGGA+GGG | 0.527752 | 4_1:+44871204 | None:intergenic |
| GCGCCCTATATTTAATGCAC+CGG | 0.527854 | 4_1:-44872409 | Msa0549690:CDS |
| AGGTACGCCGATGCAGTTGA+GGG | 0.528333 | 4_1:+44873943 | None:intergenic |
| ATTAGTGAATACCAGTAAGA+AGG | 0.534587 | 4_1:+44873916 | None:intergenic |
| TTTCGGGCTTTGGATTCCAT+GGG | 0.537272 | 4_1:+44872607 | None:intergenic |
| AAGGTCATGTCCACATTGAA+AGG | 0.542953 | 4_1:-44872576 | Msa0549690:CDS |
| TTGCCACGCCTGCACTCAGT+TGG | 0.560921 | 4_1:+44874048 | None:intergenic |
| GATGTATTGTTCGTGGATAG+TGG | 0.567892 | 4_1:-44872633 | Msa0549690:CDS |
| CGAAACACACCCGACGACAA+CGG | 0.571642 | 4_1:-44873977 | Msa0549690:CDS |
| TGTCCAACTGAGTGCAGGCG+TGG | 0.577607 | 4_1:-44874051 | Msa0549690:five_prime_UTR |
| TCTCCACAATAAATAACTAA+GGG | 0.579404 | 4_1:+44871077 | None:intergenic |
| TCTCCACAATAAATAACTAA+GGG | 0.579404 | 4_1:+44871273 | None:intergenic |
| AAGGTACGCCGATGCAGTTG+AGG | 0.583684 | 4_1:+44873942 | None:intergenic |
| AATATAGGGCGCCTGAAATG+TGG | 0.601319 | 4_1:+44872420 | None:intergenic |
| ACTTCAATCTTCTTAACAGG+TGG | 0.607989 | 4_1:+44871509 | None:intergenic |
| AAAGCCCGAAACTATGTCCA+AGG | 0.612081 | 4_1:-44872595 | Msa0549690:CDS |
| GAGGAATTGGGTGTGAGATG+GGG | 0.615697 | 4_1:+44873747 | None:intergenic |
| TCGTGGATAGTGGTGACCCA+TGG | 0.650075 | 4_1:-44872623 | Msa0549690:CDS |
| CTAGGGTTGGAAGTCAACAA+TGG | 0.653241 | 4_1:-44874001 | Msa0549690:exon |
| TGTAGCACCCTCAACTGCAT+CGG | 0.661050 | 4_1:-44873950 | Msa0549690:CDS |
| TGTGATGGCTTGTATAACGA+TGG | 0.668784 | 4_1:-44873690 | Msa0549690:CDS |
| CCTGTGAACACCTTTCAATG+TGG | 0.670686 | 4_1:+44872566 | None:intergenic |
| GAGGGAGTATAATTTAGAGA+CGG | 0.678730 | 4_1:+44871200 | None:intergenic |
| ACATCCAAGCTCGAGTACAG+AGG | 0.684098 | 4_1:+44873728 | None:intergenic |
| TCATGGAACAGATTAAGATG+TGG | 0.692597 | 4_1:+44871485 | None:intergenic |
| GGAAACTCACAAATGTGTGA+TGG | 0.698096 | 4_1:-44873705 | Msa0549690:CDS |
| ACATCTTAATCTGTTCCATG+AGG | 0.704259 | 4_1:-44871483 | Msa0549690:CDS |
| CAGGGATGAGAGGTTCACGA+AGG | 0.711423 | 4_1:-44873823 | Msa0549690:CDS |
| CGAAGGAAGAGAAATACGAG+TGG | 0.736788 | 4_1:-44873806 | Msa0549690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATCTCAATAACTTT+TGG | - | chr4_1:44872585-44872604 | Msa0549690:CDS | 15.0% |
| !! | ATTTATATATGAAACTACAT+TGG | + | chr4_1:44873119-44873138 | None:intergenic | 15.0% |
| !! | AAAACAACTTATAGCTTATA+CGG | - | chr4_1:44871901-44871920 | Msa0549690:intron | 20.0% |
| !! | CTGAAAATAATATCATAAGT+TGG | + | chr4_1:44872011-44872030 | None:intergenic | 20.0% |
| !!! | CAACTTATGATATTATTTTC+AGG | - | chr4_1:44872009-44872028 | Msa0549690:intron | 20.0% |
| !!! | TCTTTTAATGATGATTTACT+TGG | - | chr4_1:44872077-44872096 | Msa0549690:intron | 20.0% |
| !!! | CTTTTAATGATGATTTACTT+GGG | - | chr4_1:44872078-44872097 | Msa0549690:intron | 20.0% |
| !!! | TTTTAATGATGATTTACTTG+GGG | - | chr4_1:44872079-44872098 | Msa0549690:intron | 20.0% |
| !!! | GTTTTGGTAAATAAAAGTAA+TGG | - | chr4_1:44872110-44872129 | Msa0549690:intron | 20.0% |
| !!! | TAATGGATTTGTTTTGTATA+TGG | - | chr4_1:44872127-44872146 | Msa0549690:intron | 20.0% |
| !! | TTTGTATATGGTTTAAACTT+TGG | - | chr4_1:44872139-44872158 | Msa0549690:intron | 20.0% |
| !! | ACAATCTAAACTAACAATTA+TGG | - | chr4_1:44872391-44872410 | Msa0549690:CDS | 20.0% |
| !!! | TATGTTAACTTTGATTTTGA+AGG | - | chr4_1:44872455-44872474 | Msa0549690:intron | 20.0% |
| !!! | TTTTAAGAACATTAGAATCA+AGG | + | chr4_1:44872660-44872679 | None:intergenic | 20.0% |
| !! | AAGTTTATAATGTGATATCA+GGG | + | chr4_1:44872926-44872945 | None:intergenic | 20.0% |
| !!! | AAGTTGTTTAATTCTAGTTT+TGG | - | chr4_1:44873439-44873458 | Msa0549690:intron | 20.0% |
| !!! | TTTAATTCTAGTTTTGGTTA+GGG | - | chr4_1:44873445-44873464 | Msa0549690:intron | 20.0% |
| ! | ATAAGTTACATAGTAGTAGA+AGG | + | chr4_1:44871538-44871557 | None:intergenic | 25.0% |
| ! | GTAATGTTTCGTGAAATTAT+TGG | - | chr4_1:44871584-44871603 | Msa0549690:intron | 25.0% |
| !!! | TTTTTCAATTAAGACGATAG+AGG | - | chr4_1:44871669-44871688 | Msa0549690:intron | 25.0% |
| ! | GTATGAACTTATAAGCTATA+AGG | - | chr4_1:44871821-44871840 | Msa0549690:intron | 25.0% |
| ! | TTTAATGATGATTTACTTGG+GGG | - | chr4_1:44872080-44872099 | Msa0549690:intron | 25.0% |
| !! | AATTTTCCTTTGTCCTTTAA+TGG | - | chr4_1:44872356-44872375 | Msa0549690:CDS | 25.0% |
| ! | AAAATTCCATTAAAGGACAA+AGG | + | chr4_1:44872365-44872384 | None:intergenic | 25.0% |
| !! | TTTGTCCTTTAATGGAATTT+TGG | - | chr4_1:44872364-44872383 | Msa0549690:CDS | 25.0% |
| ! | ATTGAGATAAATATGCCATT+TGG | + | chr4_1:44872579-44872598 | None:intergenic | 25.0% |
| !!! | TTTTGTGTATGTTCTAAAGA+AGG | - | chr4_1:44872773-44872792 | Msa0549690:intron | 25.0% |
| ! | AAAAAAAAAAAGAGGCTGTA+TGG | + | chr4_1:44872807-44872826 | None:intergenic | 25.0% |
| ! | AGTTTATAATGTGATATCAG+GGG | + | chr4_1:44872925-44872944 | None:intergenic | 25.0% |
| ! | CAAGTTTATAATGTGATATC+AGG | + | chr4_1:44872927-44872946 | None:intergenic | 25.0% |
| ! | CTGATATCACATTATAAACT+TGG | - | chr4_1:44872925-44872944 | Msa0549690:intron | 25.0% |
| ! | TTCTTAGATTGACATCAAAT+CGG | + | chr4_1:44872994-44873013 | None:intergenic | 25.0% |
| !! | CAATCTAAGAACTAATTTGT+TGG | - | chr4_1:44873003-44873022 | Msa0549690:intron | 25.0% |
| !! | ATTTCTTTTCACAAAGTTAC+TGG | - | chr4_1:44873071-44873090 | Msa0549690:intron | 25.0% |
| ! | AAAGTTACTGGATTTATAAG+TGG | - | chr4_1:44873083-44873102 | Msa0549690:intron | 25.0% |
| ! | CTTTGCAATGATATAGAAAA+TGG | - | chr4_1:44873229-44873248 | Msa0549690:intron | 25.0% |
| ! | ATAATCAGATAGATTTCATC+AGG | - | chr4_1:44873270-44873289 | Msa0549690:intron | 25.0% |
| ! | AGAAAAAAACAATACTGTAC+TGG | + | chr4_1:44873303-44873322 | None:intergenic | 25.0% |
| !!! | GTTTAATTCTAGTTTTGGTT+AGG | - | chr4_1:44873444-44873463 | Msa0549690:intron | 25.0% |
| ! | TACAAAAGTGACACTTAAAA+AGG | + | chr4_1:44873744-44873763 | None:intergenic | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+AGG | + | chr4_1:44873780-44873799 | None:intergenic | 25.0% |
| ! | TTACCCTTAGTTATTTATTG+TGG | - | chr4_1:44873834-44873853 | Msa0549690:intron | 25.0% |
| ! | TCTCCACAATAAATAACTAA+GGG | + | chr4_1:44873840-44873859 | None:intergenic | 25.0% |
| ! | AAATGACACTTAAAAAGGAA+CGG | + | chr4_1:44873935-44873954 | None:intergenic | 25.0% |
| !!! | TCCTTTTTAAGTGTCATTTT+TGG | - | chr4_1:44873936-44873955 | Msa0549690:CDS | 25.0% |
| ! | TCCAAAAATGACACTTAAAA+AGG | + | chr4_1:44873940-44873959 | None:intergenic | 25.0% |
| ! | TAAATAACTAAGGGTAATGT+TGG | + | chr4_1:44873831-44873850 | None:intergenic | 25.0% |
| ! | TTACCCTTAGTTATTTATTG+TGG | - | chr4_1:44873834-44873853 | Msa0549690:intron | 25.0% |
| ! | TCTCCACAATAAATAACTAA+GGG | + | chr4_1:44873840-44873859 | None:intergenic | 25.0% |
| AATACCAGTAAGAAGGATTA+AGG | + | chr4_1:44871190-44871209 | None:intergenic | 30.0% | |
| ATTAGTGAATACCAGTAAGA+AGG | + | chr4_1:44871197-44871216 | None:intergenic | 30.0% | |
| AGTTCAGAAAAATGACTAGA+AGG | + | chr4_1:44871226-44871245 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGTTTCTCTCTTTC+AGG | - | chr4_1:44871268-44871287 | Msa0549690:three_prime_UTR | 30.0% |
| !!! | TGTTTTGTTTCTCTCTTTCA+GGG | - | chr4_1:44871269-44871288 | Msa0549690:three_prime_UTR | 30.0% |
| TTGAATGATGTGACGAAAAT+GGG | + | chr4_1:44871343-44871362 | None:intergenic | 30.0% | |
| CAAAATCGTTTACTTTCTCA+GGG | - | chr4_1:44871495-44871514 | Msa0549690:CDS | 30.0% | |
| TCTCATTATCTGATTCTGTT+TGG | - | chr4_1:44872185-44872204 | Msa0549690:intron | 30.0% | |
| !! | TTTGATTTGGTTATCGAGAA+AGG | - | chr4_1:44872315-44872334 | Msa0549690:intron | 30.0% |
| GAAAGGAACTATGGTAAATT+AGG | - | chr4_1:44872332-44872351 | Msa0549690:intron | 30.0% | |
| TCAAGCCAAAATTCCATTAA+AGG | + | chr4_1:44872372-44872391 | None:intergenic | 30.0% | |
| AATCCGGTGCATTAAATATA+GGG | + | chr4_1:44872707-44872726 | None:intergenic | 30.0% | |
| AAATCCGGTGCATTAAATAT+AGG | + | chr4_1:44872708-44872727 | None:intergenic | 30.0% | |
| !!! | GTCTGCTTTTTGATATATTG+AGG | - | chr4_1:44872858-44872877 | Msa0549690:intron | 30.0% |
| ! | AAGATAGATGAACATTTTCC+AGG | - | chr4_1:44873552-44873571 | Msa0549690:intron | 30.0% |
| ! | AGATAGATGAACATTTTCCA+GGG | - | chr4_1:44873553-44873572 | Msa0549690:intron | 30.0% |
| CTCTCCACAATAAATAACTA+AGG | + | chr4_1:44873841-44873860 | None:intergenic | 30.0% | |
| CTCTCCACAATAAATAACTA+AGG | + | chr4_1:44873841-44873860 | None:intergenic | 30.0% | |
| GTTGAATGATGTGACGAAAA+TGG | + | chr4_1:44871344-44871363 | None:intergenic | 35.0% | |
| AAGGTCAATGCAAGTAATGT+TGG | + | chr4_1:44871451-44871470 | None:intergenic | 35.0% | |
| TTTGAACAGCAACATGAGAA+AGG | + | chr4_1:44871470-44871489 | None:intergenic | 35.0% | |
| GCAAAATCGTTTACTTTCTC+AGG | - | chr4_1:44871494-44871513 | Msa0549690:CDS | 35.0% | |
| TTACTTTCTCAGGGATTCAA+AGG | - | chr4_1:44871504-44871523 | Msa0549690:CDS | 35.0% | |
| GAAAATGACAGTTACCAAAC+AGG | - | chr4_1:44871786-44871805 | Msa0549690:intron | 35.0% | |
| CATTACTCTACAAGTCAGTT+TGG | + | chr4_1:44871981-44872000 | None:intergenic | 35.0% | |
| !! | CAAACTGACTTGTAGAGTAA+TGG | - | chr4_1:44871979-44871998 | Msa0549690:intron | 35.0% |
| AGGACTTATAGTCTAATGTG+AGG | - | chr4_1:44872029-44872048 | Msa0549690:intron | 35.0% | |
| TCAAAACACTCATCGTCAAA+AGG | + | chr4_1:44872300-44872319 | None:intergenic | 35.0% | |
| !!! | TGACGATGAGTGTTTTGATT+TGG | - | chr4_1:44872302-44872321 | Msa0549690:intron | 35.0% |
| TCTCAAGCTTAAGAACTGTA+GGG | + | chr4_1:44872418-44872437 | None:intergenic | 35.0% | |
| TTTGAAGGATGTATTGTTCG+TGG | - | chr4_1:44872470-44872489 | Msa0549690:intron | 35.0% | |
| ! | TATCTCAATAACTTTTGGCC+AGG | - | chr4_1:44872590-44872609 | Msa0549690:CDS | 35.0% |
| AAGAGTTCATTCTTCAAACC+TGG | + | chr4_1:44872611-44872630 | None:intergenic | 35.0% | |
| AGAACATTAGAATCAAGGCA+GGG | + | chr4_1:44872655-44872674 | None:intergenic | 35.0% | |
| AAGAACATTAGAATCAAGGC+AGG | + | chr4_1:44872656-44872675 | None:intergenic | 35.0% | |
| ! | AATGTGATATCAGGGGATTT+TGG | + | chr4_1:44872918-44872937 | None:intergenic | 35.0% |
| GGCAAAGATTTCTTCAATGA+AGG | - | chr4_1:44873024-44873043 | Msa0549690:intron | 35.0% | |
| GTTACTGGATTTATAAGTGG+AGG | - | chr4_1:44873086-44873105 | Msa0549690:intron | 35.0% | |
| ! | TTTCTTCCTTTTCTACCTTC+TGG | - | chr4_1:44873318-44873337 | Msa0549690:intron | 35.0% |
| AAACAACTTGAGCAAAACAC+AGG | + | chr4_1:44873428-44873447 | None:intergenic | 35.0% | |
| ACTTCAATCTTCTTAACAGG+TGG | + | chr4_1:44873604-44873623 | None:intergenic | 35.0% | |
| TCATGGAACAGATTAAGATG+TGG | + | chr4_1:44873628-44873647 | None:intergenic | 35.0% | |
| ACATCTTAATCTGTTCCATG+AGG | - | chr4_1:44873627-44873646 | Msa0549690:CDS | 35.0% | |
| GACACTTAAAAAGGAACAGA+GGG | + | chr4_1:44873735-44873754 | None:intergenic | 35.0% | |
| TGACACTTAAAAAGGAACAG+AGG | + | chr4_1:44873736-44873755 | None:intergenic | 35.0% | |
| GAGTATAATTTAGAGACGGA+GGG | + | chr4_1:44873909-44873928 | None:intergenic | 35.0% | |
| ! | GAGGGAGTATAATTTAGAGA+CGG | + | chr4_1:44873913-44873932 | None:intergenic | 35.0% |
| ! | GCAATTATCACCGTTTTGTC+CGG | - | chr4_1:44871081-44871100 | Msa0549690:three_prime_UTR | 40.0% |
| CGTACCTTAATCCTTCTTAC+TGG | - | chr4_1:44871183-44871202 | Msa0549690:three_prime_UTR | 40.0% | |
| GGAAACTCACAAATGTGTGA+TGG | - | chr4_1:44871405-44871424 | Msa0549690:three_prime_UTR | 40.0% | |
| ! | TGTGATGGCTTGTATAACGA+TGG | - | chr4_1:44871420-44871439 | Msa0549690:exon | 40.0% |
| ACGACTAAAACAGACCTGTT+TGG | + | chr4_1:44871803-44871822 | None:intergenic | 40.0% | |
| AAGTTATCTTGCAGTCTGCT+TGG | + | chr4_1:44871877-44871896 | None:intergenic | 40.0% | |
| GATGATTTACTTGGGGGAAT+TGG | - | chr4_1:44872086-44872105 | Msa0549690:intron | 40.0% | |
| GGTTATCGAGAAAGGAACTA+TGG | - | chr4_1:44872323-44872342 | Msa0549690:intron | 40.0% | |
| CTCTCAAGCTTAAGAACTGT+AGG | + | chr4_1:44872419-44872438 | None:intergenic | 40.0% | |
| GATGTATTGTTCGTGGATAG+TGG | - | chr4_1:44872477-44872496 | Msa0549690:intron | 40.0% | |
| ATGACCTTGGACATAGTTTC+GGG | + | chr4_1:44872522-44872541 | None:intergenic | 40.0% | |
| CATGACCTTGGACATAGTTT+CGG | + | chr4_1:44872523-44872542 | None:intergenic | 40.0% | |
| TTTCAATGTGGACATGACCT+TGG | + | chr4_1:44872535-44872554 | None:intergenic | 40.0% | |
| AAGGTCATGTCCACATTGAA+AGG | - | chr4_1:44872534-44872553 | Msa0549690:CDS | 40.0% | |
| !! | CACATTGAAAGGTGTTCACA+GGG | - | chr4_1:44872545-44872564 | Msa0549690:CDS | 40.0% |
| !!! | CACAGGGTTTTGAAACCAAA+TGG | - | chr4_1:44872561-44872580 | Msa0549690:CDS | 40.0% |
| ! | TCTGTTGAGTGGACAACTTT+TGG | - | chr4_1:44872735-44872754 | Msa0549690:intron | 40.0% |
| AAAGAGCCAGAAGGTAGAAA+AGG | + | chr4_1:44873327-44873346 | None:intergenic | 40.0% | |
| !!! | TTCTACCTTCTGGCTCTTTT+TGG | - | chr4_1:44873328-44873347 | Msa0549690:intron | 40.0% |
| GTAACACAACTCTCCATCAA+AGG | + | chr4_1:44873403-44873422 | None:intergenic | 40.0% | |
| !!! | TCTAGTTTTGGTTAGGGAAG+AGG | - | chr4_1:44873451-44873470 | Msa0549690:intron | 40.0% |
| !!! | CTAGTTTTGGTTAGGGAAGA+GGG | - | chr4_1:44873452-44873471 | Msa0549690:intron | 40.0% |
| !!! | TAGTTTTGGTTAGGGAAGAG+GGG | - | chr4_1:44873453-44873472 | Msa0549690:intron | 40.0% |
| GGCACTTCAATCTTCTTAAC+AGG | + | chr4_1:44873607-44873626 | None:intergenic | 40.0% | |
| CTTCACTTTCTAACTCCTCA+TGG | + | chr4_1:44873645-44873664 | None:intergenic | 40.0% | |
| GGAGTATAATTTAGAGACGG+AGG | + | chr4_1:44873910-44873929 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | chr4_1:44873931-44873950 | None:intergenic | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr4_1:44873932-44873951 | None:intergenic | 40.0% | |
| ! | ATTATCACCGTTTTGTCCGG+CGG | - | chr4_1:44871084-44871103 | Msa0549690:three_prime_UTR | 45.0% |
| CTAGGGTTGGAAGTCAACAA+TGG | - | chr4_1:44871109-44871128 | Msa0549690:three_prime_UTR | 45.0% | |
| TTCTCTCTTTCAGGGATGAG+AGG | - | chr4_1:44871277-44871296 | Msa0549690:three_prime_UTR | 45.0% | |
| CGAAGGAAGAGAAATACGAG+TGG | - | chr4_1:44871304-44871323 | Msa0549690:three_prime_UTR | 45.0% | |
| AGAGGAATTGGGTGTGAGAT+GGG | + | chr4_1:44871367-44871386 | None:intergenic | 45.0% | |
| AGCTCGAGTACAGAGGAATT+GGG | + | chr4_1:44871378-44871397 | None:intergenic | 45.0% | |
| AAGCTCGAGTACAGAGGAAT+TGG | + | chr4_1:44871379-44871398 | None:intergenic | 45.0% | |
| AATTCCTCTGTACTCGAGCT+TGG | - | chr4_1:44871378-44871397 | Msa0549690:three_prime_UTR | 45.0% | |
| !! | GTAGCGAATGAGGCTTTGTT+TGG | + | chr4_1:44871959-44871978 | None:intergenic | 45.0% |
| !! | AGTCAGTTTGGTAGCGAATG+AGG | + | chr4_1:44871969-44871988 | None:intergenic | 45.0% |
| !! | ACTTGGGGGAATTGGTGTTT+TGG | - | chr4_1:44872094-44872113 | Msa0549690:intron | 45.0% |
| !! | TTTCGGGCTTTGGATTCCAT+GGG | + | chr4_1:44872506-44872525 | None:intergenic | 45.0% |
| TTGGACATAGTTTCGGGCTT+TGG | + | chr4_1:44872516-44872535 | None:intergenic | 45.0% | |
| AAAGCCCGAAACTATGTCCA+AGG | - | chr4_1:44872515-44872534 | Msa0549690:intron | 45.0% | |
| CCTGTGAACACCTTTCAATG+TGG | + | chr4_1:44872547-44872566 | None:intergenic | 45.0% | |
| !! | CCACATTGAAAGGTGTTCAC+AGG | - | chr4_1:44872544-44872563 | Msa0549690:CDS | 45.0% |
| ATTCATGCCAGCCACATTTC+AGG | - | chr4_1:44872679-44872698 | Msa0549690:intron | 45.0% | |
| ! | AATATAGGGCGCCTGAAATG+TGG | + | chr4_1:44872693-44872712 | None:intergenic | 45.0% |
| GCGCCCTATATTTAATGCAC+CGG | - | chr4_1:44872701-44872720 | Msa0549690:intron | 45.0% | |
| TTAATGCACCGGATTTCAGC+TGG | - | chr4_1:44872712-44872731 | Msa0549690:intron | 45.0% | |
| TCAACAGACCAGCTGAAATC+CGG | + | chr4_1:44872723-44872742 | None:intergenic | 45.0% | |
| ! | ATTTCAGCTGGTCTGTTGAG+TGG | - | chr4_1:44872724-44872743 | Msa0549690:intron | 45.0% |
| !! | TATTGAGGTGCTGCTACCAA+AGG | - | chr4_1:44872873-44872892 | Msa0549690:intron | 45.0% |
| AACACATACGTTCGAGCCTT+TGG | + | chr4_1:44872892-44872911 | None:intergenic | 45.0% | |
| CGGTCACTGTAGTACAAAAC+TGG | + | chr4_1:44872974-44872993 | None:intergenic | 45.0% | |
| AAGCTCCAAAAAGAGCCAGA+AGG | + | chr4_1:44873336-44873355 | None:intergenic | 45.0% | |
| !!! | TTTTTGGAGCTTGCTACACC+TGG | - | chr4_1:44873344-44873363 | Msa0549690:intron | 45.0% |
| AGGGGGATTCATCCAATCTT+TGG | - | chr4_1:44873368-44873387 | Msa0549690:intron | 45.0% | |
| ACACAACTCTCCATCAAAGG+CGG | + | chr4_1:44873400-44873419 | None:intergenic | 45.0% | |
| CAACTTGAGCAAAACACAGG+TGG | + | chr4_1:44873425-44873444 | None:intergenic | 45.0% | |
| GGGTATGCACGAGATTGATA+AGG | - | chr4_1:44873473-44873492 | Msa0549690:intron | 45.0% | |
| ! | TGAACATTTTCCAGGGACAG+AGG | - | chr4_1:44873560-44873579 | Msa0549690:intron | 45.0% |
| !! | TTAAAAAAAAAAAAAAAAAG+AGG | + | chr4_1:44872815-44872834 | None:intergenic | 5.0% |
| TGTAGCACCCTCAACTGCAT+CGG | - | chr4_1:44871160-44871179 | Msa0549690:three_prime_UTR | 50.0% | |
| GAGGAATTGGGTGTGAGATG+GGG | + | chr4_1:44871366-44871385 | None:intergenic | 50.0% | |
| CAGAGGAATTGGGTGTGAGA+TGG | + | chr4_1:44871368-44871387 | None:intergenic | 50.0% | |
| ACATCCAAGCTCGAGTACAG+AGG | + | chr4_1:44871385-44871404 | None:intergenic | 50.0% | |
| TCTGTACTCGAGCTTGGATG+TGG | - | chr4_1:44871384-44871403 | Msa0549690:three_prime_UTR | 50.0% | |
| !! | GTTTCGGGCTTTGGATTCCA+TGG | + | chr4_1:44872507-44872526 | None:intergenic | 50.0% |
| ATTGGATGAATCCCCCTTCC+AGG | + | chr4_1:44873365-44873384 | None:intergenic | 50.0% | |
| CACAACTCTCCATCAAAGGC+GGG | + | chr4_1:44873399-44873418 | None:intergenic | 50.0% | |
| CGAAACACACCCGACGACAA+CGG | - | chr4_1:44871133-44871152 | Msa0549690:intron | 55.0% | |
| CTACAGTTGCCGTTGTCGTC+GGG | + | chr4_1:44871145-44871164 | None:intergenic | 55.0% | |
| GCTACAGTTGCCGTTGTCGT+CGG | + | chr4_1:44871146-44871165 | None:intergenic | 55.0% | |
| AGGTACGCCGATGCAGTTGA+GGG | + | chr4_1:44871170-44871189 | None:intergenic | 55.0% | |
| AAGGTACGCCGATGCAGTTG+AGG | + | chr4_1:44871171-44871190 | None:intergenic | 55.0% | |
| CAGGGATGAGAGGTTCACGA+AGG | - | chr4_1:44871287-44871306 | Msa0549690:three_prime_UTR | 55.0% | |
| ! | TCGTGGATAGTGGTGACCCA+TGG | - | chr4_1:44872487-44872506 | Msa0549690:intron | 55.0% |
| !! | TGGAGCTTGCTACACCTGGA+AGG | - | chr4_1:44873348-44873367 | Msa0549690:intron | 55.0% |
| !! | GGAGCTTGCTACACCTGGAA+GGG | - | chr4_1:44873349-44873368 | Msa0549690:intron | 55.0% |
| !! | GAGCTTGCTACACCTGGAAG+GGG | - | chr4_1:44873350-44873369 | Msa0549690:intron | 55.0% |
| !! | AGCTTGCTACACCTGGAAGG+GGG | - | chr4_1:44873351-44873370 | Msa0549690:intron | 55.0% |
| AGGCGGGTAGAGCCAAAGAT+TGG | + | chr4_1:44873383-44873402 | None:intergenic | 55.0% | |
| !! | TTGGCTCTACCCGCCTTTGA+TGG | - | chr4_1:44873387-44873406 | Msa0549690:intron | 55.0% |
| CATGTGATGACCTCTGTCCC+TGG | + | chr4_1:44873573-44873592 | None:intergenic | 55.0% | |
| TGTCCAACTGAGTGCAGGCG+TGG | - | chr4_1:44871059-44871078 | Msa0549690:three_prime_UTR | 60.0% | |
| TTGCCACGCCTGCACTCAGT+TGG | + | chr4_1:44871065-44871084 | None:intergenic | 60.0% | |
| ! | TAGGGCGCCTGAAATGTGGC+TGG | + | chr4_1:44872689-44872708 | None:intergenic | 60.0% |
| CCTAGCGCCGCCGGACAAAA+CGG | + | chr4_1:44871094-44871113 | None:intergenic | 65.0% | |
| ! | CGTTTTGTCCGGCGGCGCTA+GGG | - | chr4_1:44871092-44871111 | Msa0549690:three_prime_UTR | 65.0% |
| ACTTCCAACCCTAGCGCCGC+CGG | + | chr4_1:44871103-44871122 | None:intergenic | 65.0% | |
| ! | CCGTTTTGTCCGGCGGCGCT+AGG | - | chr4_1:44871091-44871110 | Msa0549690:three_prime_UTR | 70.0% |
| TTGTCCGGCGGCGCTAGGGT+TGG | - | chr4_1:44871096-44871115 | Msa0549690:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 44871055 | 44874077 | 44871055 | ID=Msa0549690;Name=Msa0549690 |
| chr4_1 | mRNA | 44871055 | 44874077 | 44871055 | ID=Msa0549690-mRNA-1;Parent=Msa0549690;Name=Msa0549690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=73|1|1|1|0.83|0.71|7|352|255 |
| chr4_1 | exon | 44871055 | 44871130 | 44871055 | ID=Msa0549690-mRNA-1:exon:11716;Parent=Msa0549690-mRNA-1 |
| chr4_1 | exon | 44871151 | 44871558 | 44871151 | ID=Msa0549690-mRNA-1:exon:11715;Parent=Msa0549690-mRNA-1 |
| chr4_1 | exon | 44872338 | 44872442 | 44872338 | ID=Msa0549690-mRNA-1:exon:11714;Parent=Msa0549690-mRNA-1 |
| chr4_1 | exon | 44872521 | 44872655 | 44872521 | ID=Msa0549690-mRNA-1:exon:11713;Parent=Msa0549690-mRNA-1 |
| chr4_1 | exon | 44872788 | 44872870 | 44872788 | ID=Msa0549690-mRNA-1:exon:11712;Parent=Msa0549690-mRNA-1 |
| chr4_1 | exon | 44873607 | 44873842 | 44873607 | ID=Msa0549690-mRNA-1:exon:11711;Parent=Msa0549690-mRNA-1 |
| chr4_1 | exon | 44873928 | 44874077 | 44873928 | ID=Msa0549690-mRNA-1:exon:11710;Parent=Msa0549690-mRNA-1 |
| chr4_1 | five_prime_UTR | 44874005 | 44874077 | 44874005 | ID=Msa0549690-mRNA-1:five_prime_utr;Parent=Msa0549690-mRNA-1 |
| chr4_1 | CDS | 44873928 | 44874004 | 44873928 | ID=Msa0549690-mRNA-1:cds;Parent=Msa0549690-mRNA-1 |
| chr4_1 | CDS | 44873607 | 44873842 | 44873607 | ID=Msa0549690-mRNA-1:cds;Parent=Msa0549690-mRNA-1 |
| chr4_1 | CDS | 44872788 | 44872870 | 44872788 | ID=Msa0549690-mRNA-1:cds;Parent=Msa0549690-mRNA-1 |
| chr4_1 | CDS | 44872521 | 44872655 | 44872521 | ID=Msa0549690-mRNA-1:cds;Parent=Msa0549690-mRNA-1 |
| chr4_1 | CDS | 44872338 | 44872442 | 44872338 | ID=Msa0549690-mRNA-1:cds;Parent=Msa0549690-mRNA-1 |
| chr4_1 | CDS | 44871427 | 44871558 | 44871427 | ID=Msa0549690-mRNA-1:cds;Parent=Msa0549690-mRNA-1 |
| chr4_1 | three_prime_UTR | 44871151 | 44871426 | 44871151 | ID=Msa0549690-mRNA-1:three_prime_utr;Parent=Msa0549690-mRNA-1 |
| chr4_1 | three_prime_UTR | 44871055 | 44871130 | 44871055 | ID=Msa0549690-mRNA-1:three_prime_utr;Parent=Msa0549690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
