AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876200 MtrunA17_Chr6g0457391 97.701 87 2 0 1 87 1 87 2.20e-59 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876200 AT5G16060.1 73.256 86 23 0 1 86 1 86 1.14e-43 137

Find 34 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTGGGTATAAAAGTTTC+TGG 0.155112 6_1:+14025497 Msa0876200:three_prime_UTR
GAATAATTTCATGGGAATAT+TGG 0.256974 6_1:-14025546 None:intergenic
AGATTGAGAAATCATTATTC+TGG 0.260898 6_1:+14025481 Msa0876200:three_prime_UTR
GGAGAACACTTTCTGTTGTT+TGG 0.342847 6_1:+14022172 Msa0876200:CDS
TCAACTTGGGAATAATTTCA+TGG 0.361369 6_1:-14025555 None:intergenic
GAAATAATAATAGAACATTA+AGG 0.369505 6_1:+14025313 Msa0876200:three_prime_UTR
TTCTGGGTATAAAAGTTTCT+GGG 0.404922 6_1:+14025498 Msa0876200:three_prime_UTR
ACCACCCATTTCAAGCTTTG+AGG 0.413990 6_1:-14021257 None:intergenic
TTCCTCCAAGACAGAATCAT+TGG 0.415717 6_1:-14025057 None:intergenic
TGAATCCTCAAAGCTTGAAA+TGG 0.426225 6_1:+14021252 Msa0876200:exon
CAGCACCAATGATTCTGTCT+TGG 0.459936 6_1:+14025052 Msa0876200:intron
CCTTTCAGCTCCTGCGACTG+AGG 0.462379 6_1:+14021214 Msa0876200:five_prime_UTR
GATTGAGAAATCATTATTCT+GGG 0.466842 6_1:+14025482 Msa0876200:three_prime_UTR
AACTTAAGATGTTTGAAATG+AGG 0.475319 6_1:+14025206 Msa0876200:three_prime_UTR
CACCAATGATTCTGTCTTGG+AGG 0.476502 6_1:+14025055 Msa0876200:CDS
CAACTTGGGAATAATTTCAT+GGG 0.498401 6_1:-14025554 None:intergenic
AAACATCTTAAGTTGAATGT+CGG 0.511052 6_1:-14025197 None:intergenic
AGCTTTACGGAGCAAAATGA+AGG 0.524128 6_1:+14022092 Msa0876200:intron
TTTCTGTTGTTTGGCAATGT+CGG 0.528813 6_1:+14022181 Msa0876200:CDS
GAAATATGCTGAGTGTGCTA+TGG 0.542058 6_1:+14022149 Msa0876200:CDS
AAATATGCTGAGTGTGCTAT+GGG 0.546403 6_1:+14022150 Msa0876200:CDS
CTCAATCTTATAACAAACAT+GGG 0.548772 6_1:-14025466 None:intergenic
TTTACATTCCTCTGAAAACA+TGG 0.549797 6_1:+14025427 Msa0876200:three_prime_UTR
TCTCAATCTTATAACAAACA+TGG 0.553947 6_1:-14025467 None:intergenic
AATCTAAAACAAGGTTGAGA+AGG 0.557934 6_1:+14025095 Msa0876200:exon
GAATCCTCAAAGCTTGAAAT+GGG 0.566940 6_1:+14021253 Msa0876200:exon
GCAACAACAACCTCAGTCGC+AGG 0.582386 6_1:-14021224 None:intergenic
CCTCAGTCGCAGGAGCTGAA+AGG 0.582848 6_1:-14021214 None:intergenic
GTCAAGAAGAAAGTCGAAGA+AGG 0.590627 6_1:+14021307 Msa0876200:CDS
TCTTCATCATTGTGATGCAA+TGG 0.598217 6_1:+14025237 Msa0876200:three_prime_UTR
ACGGAGCAAAATGAAGGTGA+AGG 0.608873 6_1:+14022098 Msa0876200:CDS
TCCTCAAAGCTTGAAATGGG+TGG 0.622205 6_1:+14021256 Msa0876200:exon
AAAGAATACAATCTAAAACA+AGG 0.678613 6_1:+14025086 Msa0876200:CDS
AATATGCTGAGTGTGCTATG+GGG 0.810113 6_1:+14022151 Msa0876200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAATAAATATTTGTAT+TGG + chr6_1:14024518-14024537 Msa0876200:intron 10.0%
!!! ATAATAACTTTGTTTTTAAA+AGG + chr6_1:14024936-14024955 Msa0876200:intron 10.0%
!!! TCAATTTTTATGAACAAAAA+AGG + chr6_1:14021375-14021394 Msa0876200:intron 15.0%
!!! CAATTTTTATGAACAAAAAA+GGG + chr6_1:14021376-14021395 Msa0876200:intron 15.0%
!!! TATGTATAAGCTATTTTTAT+AGG + chr6_1:14021592-14021611 Msa0876200:intron 15.0%
!!! TTGATTGTTTTGTTTTATTT+TGG + chr6_1:14022278-14022297 Msa0876200:intron 15.0%
!!! TTATATATGCAATTTTTGTT+AGG + chr6_1:14022750-14022769 Msa0876200:intron 15.0%
!! AAAGTAATGAATCTAATATA+AGG - chr6_1:14024769-14024788 None:intergenic 15.0%
!! ATCTTAAGATTATTTACATA+AGG + chr6_1:14024858-14024877 Msa0876200:intron 15.0%
!! GAAATAATAATAGAACATTA+AGG + chr6_1:14025313-14025332 Msa0876200:three_prime_UTR 15.0%
!! AAAAAAGGGTTTATTTCAAA+TGG + chr6_1:14021390-14021409 Msa0876200:intron 20.0%
!! AAAAAGGGTTTATTTCAAAT+GGG + chr6_1:14021391-14021410 Msa0876200:intron 20.0%
!!! TATCATCATTTTCATTCAAT+TGG + chr6_1:14021499-14021518 Msa0876200:intron 20.0%
!!! ATCATCATTTTCATTCAATT+GGG + chr6_1:14021500-14021519 Msa0876200:intron 20.0%
!! CATATTATTGAAATGGATAA+CGG - chr6_1:14021789-14021808 None:intergenic 20.0%
!!! GTCATTTTTTAAATTATGAC+TGG + chr6_1:14021891-14021910 Msa0876200:intron 20.0%
!!! TTCATTTTTCATTGTGTTTT+TGG + chr6_1:14021975-14021994 Msa0876200:intron 20.0%
!! CAAATTTATGATCAAAACAT+TGG + chr6_1:14022029-14022048 Msa0876200:intron 20.0%
!! ACCAATAAAATTACTAACAA+AGG + chr6_1:14022391-14022410 Msa0876200:intron 20.0%
!!! TCCTTTGTTAGTAATTTTAT+TGG - chr6_1:14022395-14022414 None:intergenic 20.0%
!!! ATGAGTTTTTTTAGAAATGT+GGG + chr6_1:14022605-14022624 Msa0876200:intron 20.0%
!! AATAGAGATGTAGATTTAAA+TGG + chr6_1:14022945-14022964 Msa0876200:intron 20.0%
!!! TATTTTTTACCACAATGAAA+TGG - chr6_1:14023732-14023751 None:intergenic 20.0%
!!! TTATTCATGATAGAGTATTA+TGG + chr6_1:14024073-14024092 Msa0876200:intron 20.0%
!!! TCATTTTCTCAAAATGTTAT+CGG - chr6_1:14024420-14024439 None:intergenic 20.0%
!!! AAAGAATACAATCTAAAACA+AGG + chr6_1:14025086-14025105 Msa0876200:CDS 20.0%
!!! TCTTTTATGTGAATTTTGTA+TGG + chr6_1:14025285-14025304 Msa0876200:three_prime_UTR 20.0%
!! CTTTTTGATGAAGAAAAAGT+GGG - chr6_1:14021353-14021372 None:intergenic 25.0%
!! ACTTTTTGATGAAGAAAAAG+TGG - chr6_1:14021354-14021373 None:intergenic 25.0%
! TATATACATCAATCCACAAA+TGG + chr6_1:14021422-14021441 Msa0876200:intron 25.0%
! ATATACATCAATCCACAAAT+GGG + chr6_1:14021423-14021442 Msa0876200:intron 25.0%
! AGTTTATAGTGAAATTGATG+TGG + chr6_1:14021471-14021490 Msa0876200:intron 25.0%
!! TTTTCATTCAATTGGGTTTT+TGG + chr6_1:14021507-14021526 Msa0876200:intron 25.0%
!!! AACATCTTTTTTGTAGCTTA+TGG + chr6_1:14021543-14021562 Msa0876200:intron 25.0%
! TTATACATAAGTGCTTATCA+TGG - chr6_1:14021581-14021600 None:intergenic 25.0%
!! TAAGGAGCATATTATTGAAA+TGG - chr6_1:14021796-14021815 None:intergenic 25.0%
!! ATGATCAAAACATTGGTTAA+TGG + chr6_1:14022036-14022055 Msa0876200:intron 25.0%
!! AACATTGGTTAATGGTAAAT+TGG + chr6_1:14022044-14022063 Msa0876200:intron 25.0%
!! TAGATATCTAAAGTCATTTG+TGG - chr6_1:14022535-14022554 None:intergenic 25.0%
!!! AAAAAAGCACAAATTTTGTG+CGG + chr6_1:14022559-14022578 Msa0876200:intron 25.0%
!! AAAAAAACTCATGTTTTCAG+AGG - chr6_1:14022597-14022616 None:intergenic 25.0%
!!! CATGAGTTTTTTTAGAAATG+TGG + chr6_1:14022604-14022623 Msa0876200:intron 25.0%
!! ATTTTTGTTAGGTATCAACA+TGG + chr6_1:14022761-14022780 Msa0876200:intron 25.0%
! AACATCGATAGAATCTATTT+GGG - chr6_1:14023329-14023348 None:intergenic 25.0%
! AAACATCGATAGAATCTATT+TGG - chr6_1:14023330-14023349 None:intergenic 25.0%
! AACTTTCATGGTTAAAATCA+AGG - chr6_1:14023477-14023496 None:intergenic 25.0%
! TTTGTTACTATTGTTCCAAT+TGG - chr6_1:14023571-14023590 None:intergenic 25.0%
! ATAGCATTAAGAGAGAATTA+GGG + chr6_1:14023846-14023865 Msa0876200:intron 25.0%
! TAAAGATGAAACGAAGAAAA+AGG - chr6_1:14024170-14024189 None:intergenic 25.0%
! ACAGAAAGTAAACAATAAGA+GGG - chr6_1:14024274-14024293 None:intergenic 25.0%
! TTTAATGTAATCGCAAATGT+TGG + chr6_1:14024445-14024464 Msa0876200:intron 25.0%
! AAAATGAGCCTCATAAAAAA+TGG - chr6_1:14024829-14024848 None:intergenic 25.0%
!!! AAACATCTTAAGTTGAATGT+CGG - chr6_1:14025200-14025219 None:intergenic 25.0%
!! AACTTAAGATGTTTGAAATG+AGG + chr6_1:14025206-14025225 Msa0876200:three_prime_UTR 25.0%
! AGTAAAAACTGGTACTAATA+GGG - chr6_1:14025382-14025401 None:intergenic 25.0%
!! TATTAGTACCAGTTTTTACT+GGG + chr6_1:14025382-14025401 Msa0876200:three_prime_UTR 25.0%
! CTCAATCTTATAACAAACAT+GGG - chr6_1:14025469-14025488 None:intergenic 25.0%
! TCTCAATCTTATAACAAACA+TGG - chr6_1:14025470-14025489 None:intergenic 25.0%
! AGATTGAGAAATCATTATTC+TGG + chr6_1:14025481-14025500 Msa0876200:three_prime_UTR 25.0%
! GATTGAGAAATCATTATTCT+GGG + chr6_1:14025482-14025501 Msa0876200:three_prime_UTR 25.0%
! CAAAGAAGCTTTTCATTCTT+CGG + chr6_1:14021176-14021195 Msa0876200:five_prime_UTR 30.0%
!!! AAAAAGTGGGTTTTGGATTA+GGG - chr6_1:14021340-14021359 None:intergenic 30.0%
! CATAATTTGAAACCCATTTG+TGG - chr6_1:14021438-14021457 None:intergenic 30.0%
TTATAGTGAAATTGATGTGG+TGG + chr6_1:14021474-14021493 Msa0876200:intron 30.0%
TATAGTGAAATTGATGTGGT+GGG + chr6_1:14021475-14021494 Msa0876200:intron 30.0%
AAAAGATGTTTGTCCAAACA+GGG - chr6_1:14021533-14021552 None:intergenic 30.0%
AAAAAGATGTTTGTCCAAAC+AGG - chr6_1:14021534-14021553 None:intergenic 30.0%
TGGTTAATGGTAAATTGGAA+TGG + chr6_1:14022049-14022068 Msa0876200:intron 30.0%
TTAATGGTAAATTGGAATGG+TGG + chr6_1:14022052-14022071 Msa0876200:intron 30.0%
TAATGGTAAATTGGAATGGT+GGG + chr6_1:14022053-14022072 Msa0876200:intron 30.0%
! TGATCAATTTTGCAGCTTTA+CGG + chr6_1:14022079-14022098 Msa0876200:intron 30.0%
TACTAACAAAGGACACATAT+AGG + chr6_1:14022402-14022421 Msa0876200:intron 30.0%
ACTAACAAAGGACACATATA+GGG + chr6_1:14022403-14022422 Msa0876200:intron 30.0%
! TATCTAAAGTCATTTGTGGT+GGG - chr6_1:14022531-14022550 None:intergenic 30.0%
! ATATCTAAAGTCATTTGTGG+TGG - chr6_1:14022532-14022551 None:intergenic 30.0%
! TAAAGAGATGCATTTGACTT+GGG - chr6_1:14022645-14022664 None:intergenic 30.0%
TCCATCAATTGTATACTCTA+AGG - chr6_1:14022723-14022742 None:intergenic 30.0%
AGAGTATACAATTGATGGAA+AGG + chr6_1:14022724-14022743 Msa0876200:intron 30.0%
ATTATTTGCCTACAATCTCA+GGG - chr6_1:14022882-14022901 None:intergenic 30.0%
AATTATTTGCCTACAATCTC+AGG - chr6_1:14022883-14022902 None:intergenic 30.0%
TTAGAAGTTCATGATGATCA+AGG + chr6_1:14022901-14022920 Msa0876200:intron 30.0%
! CATAGTACTTGATTGATGAT+AGG + chr6_1:14022973-14022992 Msa0876200:intron 30.0%
ATGACAATATCCATACAACA+CGG - chr6_1:14023113-14023132 None:intergenic 30.0%
GATATGCAGAAGAATATGTA+AGG - chr6_1:14023291-14023310 None:intergenic 30.0%
GATAGAATCTATTTGGGAAA+AGG - chr6_1:14023323-14023342 None:intergenic 30.0%
AAGATTCAATTCTTGCCAAT+TGG + chr6_1:14023553-14023572 Msa0876200:intron 30.0%
TTATACACTCATACATTGCA+TGG + chr6_1:14023627-14023646 Msa0876200:intron 30.0%
! CATTTTGTACCATTTCATTG+TGG + chr6_1:14023720-14023739 Msa0876200:intron 30.0%
GATAGCATTAAGAGAGAATT+AGG + chr6_1:14023845-14023864 Msa0876200:intron 30.0%
AATTAGGGTAACATCTATTG+TGG + chr6_1:14023861-14023880 Msa0876200:intron 30.0%
AACATCTATTGTGGAAAAGA+TGG + chr6_1:14023870-14023889 Msa0876200:intron 30.0%
GACAGAAAGTAAACAATAAG+AGG - chr6_1:14024275-14024294 None:intergenic 30.0%
! GAAATTTACAAGTTTTGCCA+AGG - chr6_1:14024331-14024350 None:intergenic 30.0%
! CTGTTGTATATTTCTGTGTT+GGG + chr6_1:14024581-14024600 Msa0876200:intron 30.0%
! TGTTGTATATTTCTGTGTTG+GGG + chr6_1:14024582-14024601 Msa0876200:intron 30.0%
!!! GTCTGTTACCATTTTTTATG+AGG + chr6_1:14024818-14024837 Msa0876200:intron 30.0%
! AATCTAAAACAAGGTTGAGA+AGG + chr6_1:14025095-14025114 Msa0876200:exon 30.0%
CAGTAAAAACTGGTACTAAT+AGG - chr6_1:14025383-14025402 None:intergenic 30.0%
! CTATTAGTACCAGTTTTTAC+TGG + chr6_1:14025381-14025400 Msa0876200:three_prime_UTR 30.0%
! ATTAGTACCAGTTTTTACTG+GGG + chr6_1:14025383-14025402 Msa0876200:three_prime_UTR 30.0%
! TTTACATTCCTCTGAAAACA+TGG + chr6_1:14025427-14025446 Msa0876200:three_prime_UTR 30.0%
! TTCTTTATCCATGTTTTCAG+AGG - chr6_1:14025438-14025457 None:intergenic 30.0%
ATTCTGGGTATAAAAGTTTC+TGG + chr6_1:14025497-14025516 Msa0876200:three_prime_UTR 30.0%
TTCTGGGTATAAAAGTTTCT+GGG + chr6_1:14025498-14025517 Msa0876200:three_prime_UTR 30.0%
! GCTTTTCATTCTTCGGTTTT+TGG + chr6_1:14021183-14021202 Msa0876200:five_prime_UTR 35.0%
TGAATCCTCAAAGCTTGAAA+TGG + chr6_1:14021252-14021271 Msa0876200:exon 35.0%
GAATCCTCAAAGCTTGAAAT+GGG + chr6_1:14021253-14021272 Msa0876200:exon 35.0%
!!! GAAAAAGTGGGTTTTGGATT+AGG - chr6_1:14021341-14021360 None:intergenic 35.0%
!! GATGAAGAAAAAGTGGGTTT+TGG - chr6_1:14021347-14021366 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr6_1:14021650-14021669 Msa0876200:intron 35.0%
ATAATCACATGTGTCAGAGA+CGG - chr6_1:14021861-14021880 None:intergenic 35.0%
!!! TGTGTTTTTGGAAGAAGAGA+TGG + chr6_1:14021987-14022006 Msa0876200:intron 35.0%
!!! GTGTTTTTGGAAGAAGAGAT+GGG + chr6_1:14021988-14022007 Msa0876200:intron 35.0%
AAATATGCTGAGTGTGCTAT+GGG + chr6_1:14022150-14022169 Msa0876200:CDS 35.0%
! TTTCTGTTGTTTGGCAATGT+CGG + chr6_1:14022181-14022200 Msa0876200:CDS 35.0%
! GCATCTTTCTTTTGTCAGTT+TGG + chr6_1:14022305-14022324 Msa0876200:intron 35.0%
!! CGAATGTGTCTTTTGTTTGT+TGG + chr6_1:14022332-14022351 Msa0876200:intron 35.0%
!! GTGTCTTTTGTTTGTTGGTT+TGG + chr6_1:14022337-14022356 Msa0876200:intron 35.0%
ACAAACCAGATATACGTTCA+AGG - chr6_1:14022364-14022383 None:intergenic 35.0%
ATCTCACACATTCAGGAAAT+TGG + chr6_1:14022468-14022487 Msa0876200:intron 35.0%
TCTCACACATTCAGGAAATT+GGG + chr6_1:14022469-14022488 Msa0876200:intron 35.0%
!! TTTATCCCTTTGACTTGTCT+CGG - chr6_1:14022503-14022522 None:intergenic 35.0%
! ATCTAAAGTCATTTGTGGTG+GGG - chr6_1:14022530-14022549 None:intergenic 35.0%
!! ATGTTTTCAGAGGTGTACTT+TGG - chr6_1:14022587-14022606 None:intergenic 35.0%
!! AAAGAGATGCATTTGACTTG+GGG - chr6_1:14022644-14022663 None:intergenic 35.0%
CTAAAGAGATGCATTTGACT+TGG - chr6_1:14022646-14022665 None:intergenic 35.0%
TTAAGTTCATGCCTAAAGCT+AGG + chr6_1:14022692-14022711 Msa0876200:intron 35.0%
GCCTTAGAGTATACAATTGA+TGG + chr6_1:14022719-14022738 Msa0876200:intron 35.0%
TGACAATATCCATACAACAC+GGG - chr6_1:14023112-14023131 None:intergenic 35.0%
ACTAGAAGTTTCTCCTTCTT+AGG - chr6_1:14023388-14023407 None:intergenic 35.0%
AAGCACAGGTTATATGTAAC+AGG - chr6_1:14023454-14023473 None:intergenic 35.0%
!! TTTACTCCTGTTGATGATCT+AGG + chr6_1:14023527-14023546 Msa0876200:intron 35.0%
! CTTTTTCCTAGATCATCAAC+AGG - chr6_1:14023536-14023555 None:intergenic 35.0%
GTGGTCACAGTTTGAAAATA+AGG - chr6_1:14023779-14023798 None:intergenic 35.0%
AGAATGTTGTGTGGAAATAC+CGG + chr6_1:14023803-14023822 Msa0876200:intron 35.0%
AGATGGTTGAATCTCAACTT+AGG + chr6_1:14023887-14023906 Msa0876200:intron 35.0%
AAGAACAACCTAGAGATCAA+TGG + chr6_1:14024036-14024055 Msa0876200:intron 35.0%
TATCCAAACCATTGATCTCT+AGG - chr6_1:14024047-14024066 None:intergenic 35.0%
!! TAACAAGCTTGTTAGCTTGA+TGG + chr6_1:14024227-14024246 Msa0876200:intron 35.0%
! ACTTTCTGTCAGTTCAGTTT+TGG + chr6_1:14024285-14024304 Msa0876200:intron 35.0%
CCAACACAGAAATATACAAC+AGG - chr6_1:14024583-14024602 None:intergenic 35.0%
! CCTGTTGTATATTTCTGTGT+TGG + chr6_1:14024580-14024599 Msa0876200:intron 35.0%
TAACAGTGTTAGAAGTCTCT+TGG - chr6_1:14024737-14024756 None:intergenic 35.0%
GAGACTTCTAACACTGTTAT+TGG + chr6_1:14024738-14024757 Msa0876200:intron 35.0%
CTTCTAACACTGTTATTGGT+CGG + chr6_1:14024742-14024761 Msa0876200:intron 35.0%
! TCACGAGAAAGTATACTAAG+AGG - chr6_1:14024902-14024921 None:intergenic 35.0%
AGTACTTGTATGACTGAATG+TGG + chr6_1:14024993-14025012 Msa0876200:intron 35.0%
TCTTCATCATTGTGATGCAA+TGG + chr6_1:14025237-14025256 Msa0876200:three_prime_UTR 35.0%
GTCAAGAAGAAAGTCGAAGA+AGG + chr6_1:14021307-14021326 Msa0876200:CDS 40.0%
! GAAATGGATAACGGTGTGTT+TGG - chr6_1:14021780-14021799 None:intergenic 40.0%
!! ATCAATAGTGTCGGTGCTAA+CGG - chr6_1:14021821-14021840 None:intergenic 40.0%
ACGCCTTCTATCAATAGTGT+CGG - chr6_1:14021830-14021849 None:intergenic 40.0%
AGCTTTACGGAGCAAAATGA+AGG + chr6_1:14022092-14022111 Msa0876200:intron 40.0%
GAAATATGCTGAGTGTGCTA+TGG + chr6_1:14022149-14022168 Msa0876200:CDS 40.0%
AATATGCTGAGTGTGCTATG+GGG + chr6_1:14022151-14022170 Msa0876200:CDS 40.0%
GGAGAACACTTTCTGTTGTT+TGG + chr6_1:14022172-14022191 Msa0876200:CDS 40.0%
TTGGTCCTTGAACGTATATC+TGG + chr6_1:14022356-14022375 Msa0876200:intron 40.0%
! TGTGAGATGTGTCACTATAG+TGG - chr6_1:14022456-14022475 None:intergenic 40.0%
CTCACACATTCAGGAAATTG+GGG + chr6_1:14022470-14022489 Msa0876200:intron 40.0%
!! TTATCCCTTTGACTTGTCTC+GGG - chr6_1:14022502-14022521 None:intergenic 40.0%
!! AAGAGATGCATTTGACTTGG+GGG - chr6_1:14022643-14022662 None:intergenic 40.0%
CTCTTTAGATTATACAGCGC+TGG + chr6_1:14022658-14022677 Msa0876200:intron 40.0%
GATGCGACAATAAGATTAGC+AGG + chr6_1:14022785-14022804 Msa0876200:intron 40.0%
ATAAGATTAGCAGGCTGTGT+AGG + chr6_1:14022794-14022813 Msa0876200:intron 40.0%
TAAGATTAGCAGGCTGTGTA+GGG + chr6_1:14022795-14022814 Msa0876200:intron 40.0%
! ACTTTTTGTCCCGTGTTGTA+TGG + chr6_1:14023100-14023119 Msa0876200:intron 40.0%
CTGTAAAATTCTGCAGCACT+GGG + chr6_1:14023359-14023378 Msa0876200:intron 40.0%
TGTAAAATTCTGCAGCACTG+GGG + chr6_1:14023360-14023379 Msa0876200:intron 40.0%
! GGTTAAAATCAAGGAAGCAC+AGG - chr6_1:14023468-14023487 None:intergenic 40.0%
GAGCAAGACAGAAACTTTCA+TGG - chr6_1:14023489-14023508 None:intergenic 40.0%
TGGTTGAATCTCAACTTAGG+TGG + chr6_1:14023890-14023909 Msa0876200:intron 40.0%
TTTGATCTACTCTCCTAGCT+CGG - chr6_1:14023954-14023973 None:intergenic 40.0%
AGCTAGGAGAGTAGATCAAA+TGG + chr6_1:14023954-14023973 Msa0876200:intron 40.0%
TAGGAGAGTAGATCAAATGG+AGG + chr6_1:14023957-14023976 Msa0876200:intron 40.0%
AGGAGAGTAGATCAAATGGA+GGG + chr6_1:14023958-14023977 Msa0876200:intron 40.0%
CAACCTAGAGATCAATGGTT+TGG + chr6_1:14024041-14024060 Msa0876200:intron 40.0%
!! ACTAGTTGGCATCGGTTATA+TGG - chr6_1:14024110-14024129 None:intergenic 40.0%
ATATAACCGATGCCAACTAG+TGG + chr6_1:14024109-14024128 Msa0876200:intron 40.0%
TATAACCGATGCCAACTAGT+GGG + chr6_1:14024110-14024129 Msa0876200:intron 40.0%
!! GATGACTTGGTCATCTTTGT+TGG + chr6_1:14024132-14024151 Msa0876200:intron 40.0%
! GGTACCACTGGTTGTAATTT+AGG + chr6_1:14024248-14024267 Msa0876200:intron 40.0%
TTGCATATGTTCCAAGACCT+TGG + chr6_1:14024311-14024330 Msa0876200:intron 40.0%
! TACAAGTTTTGCCAAGGTCT+TGG - chr6_1:14024325-14024344 None:intergenic 40.0%
GTACGTGGTTCATAGTGTAT+AGG - chr6_1:14024624-14024643 None:intergenic 40.0%
TGTTCGAGACACATCTAACA+AGG - chr6_1:14024710-14024729 None:intergenic 40.0%
TTCCTCCAAGACAGAATCAT+TGG - chr6_1:14025060-14025079 None:intergenic 40.0%
CAAAGAACCCCAGTAAAAAC+TGG - chr6_1:14025393-14025412 None:intergenic 40.0%
TCCTCAAAGCTTGAAATGGG+TGG + chr6_1:14021256-14021275 Msa0876200:exon 45.0%
ACCACCCATTTCAAGCTTTG+AGG - chr6_1:14021260-14021279 None:intergenic 45.0%
!!! ATTGGGTTTTTGGCCCTGTT+TGG + chr6_1:14021517-14021536 Msa0876200:intron 45.0%
! GCACCGACACTATTGATAGA+AGG + chr6_1:14021824-14021843 Msa0876200:intron 45.0%
TGTGTCGTCAATGTTGTGTC+TGG + chr6_1:14021920-14021939 Msa0876200:intron 45.0%
ACGGAGCAAAATGAAGGTGA+AGG + chr6_1:14022098-14022117 Msa0876200:CDS 45.0%
GTGACACATCTCACACATTC+AGG + chr6_1:14022461-14022480 Msa0876200:intron 45.0%
TTAGTCCCGAGACAAGTCAA+AGG + chr6_1:14022494-14022513 Msa0876200:intron 45.0%
TAGTCCCGAGACAAGTCAAA+GGG + chr6_1:14022495-14022514 Msa0876200:intron 45.0%
AAGATTAGCAGGCTGTGTAG+GGG + chr6_1:14022796-14022815 Msa0876200:intron 45.0%
! GTCTGTGAATGTGCTTTTCG+TGG + chr6_1:14023141-14023160 Msa0876200:intron 45.0%
GCTGTAAAATTCTGCAGCAC+TGG + chr6_1:14023358-14023377 Msa0876200:intron 45.0%
ACCACACTGAGAATGTTGTG+TGG + chr6_1:14023794-14023813 Msa0876200:intron 45.0%
TCCACACAACATTCTCAGTG+TGG - chr6_1:14023798-14023817 None:intergenic 45.0%
ATACCGGACGAGATAGGATT+CGG + chr6_1:14023819-14023838 Msa0876200:intron 45.0%
ATTCCGAATCCTATCTCGTC+CGG - chr6_1:14023825-14023844 None:intergenic 45.0%
TTAGGTGGTTTGAGCAAGTG+TGG + chr6_1:14023905-14023924 Msa0876200:intron 45.0%
TAGGCTATAGATTCCGAGCT+AGG + chr6_1:14023938-14023957 Msa0876200:intron 45.0%
ATCTCAATCGCTAGAAGCAG+AGG + chr6_1:14023982-14024001 Msa0876200:intron 45.0%
! TGTTAGCTTGATGGTACCAC+TGG + chr6_1:14024236-14024255 Msa0876200:intron 45.0%
AGGGCCTAAATTACAACCAG+TGG - chr6_1:14024255-14024274 None:intergenic 45.0%
ATTACTATGAAGCGCACACG+CGG + chr6_1:14024365-14024384 Msa0876200:intron 45.0%
!! CGCAAATGTTGGTGTTGTGT+CGG + chr6_1:14024456-14024475 Msa0876200:intron 45.0%
! ATGCCTTCACTCAGAAGTGT+CGG + chr6_1:14024489-14024508 Msa0876200:intron 45.0%
CAGCACCAATGATTCTGTCT+TGG + chr6_1:14025052-14025071 Msa0876200:intron 45.0%
CACCAATGATTCTGTCTTGG+AGG + chr6_1:14025055-14025074 Msa0876200:CDS 45.0%
!! GTGTCGGTGCTAACGGTATA+AGG - chr6_1:14021814-14021833 None:intergenic 50.0%
TTCATGCCTAAAGCTAGGCG+AGG + chr6_1:14022697-14022716 Msa0876200:intron 50.0%
TGTAGGGGATGGAGCAGATT+GGG + chr6_1:14022811-14022830 Msa0876200:intron 50.0%
GGATGGAGCAGATTGGGTTA+GGG + chr6_1:14022817-14022836 Msa0876200:intron 50.0%
! GATGGAGCAGATTGGGTTAG+GGG + chr6_1:14022818-14022837 Msa0876200:intron 50.0%
! GGGTTAGGGGTCTAAAGCAA+AGG + chr6_1:14022831-14022850 Msa0876200:intron 50.0%
!! GGCTTTACTAGCCTTTCCCT+TGG + chr6_1:14022852-14022871 Msa0876200:intron 50.0%
ACAATCTCAGGGTCAGCCAA+GGG - chr6_1:14022871-14022890 None:intergenic 50.0%
TACAATCTCAGGGTCAGCCA+AGG - chr6_1:14022872-14022891 None:intergenic 50.0%
TTGGCTGACCCTGAGATTGT+AGG + chr6_1:14022871-14022890 Msa0876200:intron 50.0%
GTGGAAATACCGGACGAGAT+AGG + chr6_1:14023813-14023832 Msa0876200:intron 50.0%
CAAGTGTGGTAGAGACCTGT+AGG + chr6_1:14023919-14023938 Msa0876200:intron 50.0%
GCTCGGAATCTATAGCCTAC+AGG - chr6_1:14023937-14023956 None:intergenic 50.0%
CAATCGCTAGAAGCAGAGGA+AGG + chr6_1:14023986-14024005 Msa0876200:intron 50.0%
GTCATCCCACTAGTTGGCAT+CGG - chr6_1:14024118-14024137 None:intergenic 50.0%
TGCCAACTAGTGGGATGACT+TGG + chr6_1:14024119-14024138 Msa0876200:intron 50.0%
GACCAAGTCATCCCACTAGT+TGG - chr6_1:14024124-14024143 None:intergenic 50.0%
! TGAGTGAAGGCATGTCCTAG+TGG - chr6_1:14024482-14024501 None:intergenic 50.0%
!! ACCTCTCCAAAGTGCTGTGA+CGG + chr6_1:14024644-14024663 Msa0876200:intron 50.0%
GATACACCGTCACAGCACTT+TGG - chr6_1:14024653-14024672 None:intergenic 50.0%
GCAACAACAACCTCAGTCGC+AGG - chr6_1:14021227-14021246 None:intergenic 55.0%
! CTAAGGCCTCGCCTAGCTTT+AGG - chr6_1:14022706-14022725 None:intergenic 55.0%
TTAGCAGGCTGTGTAGGGGA+TGG + chr6_1:14022800-14022819 Msa0876200:intron 55.0%
GTGTAGGGGATGGAGCAGAT+TGG + chr6_1:14022810-14022829 Msa0876200:intron 55.0%
GGGATGGAGCAGATTGGGTT+AGG + chr6_1:14022816-14022835 Msa0876200:intron 55.0%
! CAGCACTGGGGATCCTAAGA+AGG + chr6_1:14023372-14023391 Msa0876200:intron 55.0%
CGACGTGTCAGTGTTGTGTC+CGG - chr6_1:14024394-14024413 None:intergenic 55.0%
!! TTGGTGTTGTGTCGGCCACT+AGG + chr6_1:14024464-14024483 Msa0876200:intron 55.0%
! GCACCGACACTTCTGAGTGA+AGG - chr6_1:14024495-14024514 None:intergenic 55.0%
! GCACTTTGGAGAGGTGTACG+TGG - chr6_1:14024639-14024658 None:intergenic 55.0%
! ACCGTCACAGCACTTTGGAG+AGG - chr6_1:14024648-14024667 None:intergenic 55.0%
CCTCAGTCGCAGGAGCTGAA+AGG - chr6_1:14021217-14021236 None:intergenic 60.0%
CCTTTCAGCTCCTGCGACTG+AGG + chr6_1:14021214-14021233 Msa0876200:five_prime_UTR 60.0%
CTCAGGGTCAGCCAAGGGAA+AGG - chr6_1:14022866-14022885 None:intergenic 60.0%
TGAAGCGCACACGCGGACAC+CGG + chr6_1:14024372-14024391 Msa0876200:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 14021164 14025567 14021164 ID=Msa0876200;Name=Msa0876200
chr6_1 mRNA 14021164 14025567 14021164 ID=Msa0876200-mRNA-1;Parent=Msa0876200;Name=Msa0876200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|0|0.33|3|455|87
chr6_1 exon 14021164 14021328 14021164 ID=Msa0876200-mRNA-1:exon:4032;Parent=Msa0876200-mRNA-1
chr6_1 exon 14022094 14022241 14022094 ID=Msa0876200-mRNA-1:exon:4033;Parent=Msa0876200-mRNA-1
chr6_1 exon 14025055 14025567 14025055 ID=Msa0876200-mRNA-1:exon:4034;Parent=Msa0876200-mRNA-1
chr6_1 five_prime_UTR 14021164 14021270 14021164 ID=Msa0876200-mRNA-1:five_prime_utr;Parent=Msa0876200-mRNA-1
chr6_1 CDS 14021271 14021328 14021271 ID=Msa0876200-mRNA-1:cds;Parent=Msa0876200-mRNA-1
chr6_1 CDS 14022094 14022241 14022094 ID=Msa0876200-mRNA-1:cds;Parent=Msa0876200-mRNA-1
chr6_1 CDS 14025055 14025112 14025055 ID=Msa0876200-mRNA-1:cds;Parent=Msa0876200-mRNA-1
chr6_1 three_prime_UTR 14025113 14025567 14025113 ID=Msa0876200-mRNA-1:three_prime_utr;Parent=Msa0876200-mRNA-1
Gene Sequence

>Msa0876200

ATGGGTGGTTACATTCAAGAAGCACGTGAGAATCACGTCAAGAAGAAAGTCGAAGAAGCTTTACGGAGCAAAATGAAGGTGAAGGCACTTAAAGAGTGTGATTTTTACACAAAGAAATATGCTGAGTGTGCTATGGGGAGAACACTTTCTGTTGTTTGGCAATGTCGGAAAGTAGCTAAAGAGTTGAATAATTGTCTTCATCAATTCACCAATGATTCTGTCTTGGAGGAAATGAAGAAAGAATACAATCTAAAACAAGGTTGA

Protein sequence

>Msa0876200

MGGYIQEARENHVKKKVEEALRSKMKVKALKECDFYTKKYAECAMGRTLSVVWQCRKVAKELNNCLHQFTNDSVLEEMKKEYNLKQG*