AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553700 MtrunA17_Chr4g0039421 99.770 434 1 0 1 434 28 461 0.0 906
Msa0553700 MtrunA17_Chr2g0299701 80.907 419 76 1 20 434 4 422 0.0 722
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553700 AT5G57020.1 79.032 434 91 0 1 434 1 434 0.0 738
Msa0553700 AT2G44175.1 42.391 92 48 1 28 119 10 96 2.52e-18 80.9

Find 110 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACCAAAGACATAAATTT+TGG 0.100981 4_1:-50947440 Msa0553700:CDS
GCTTTCAAAGTTGAGTAATT+TGG 0.173591 4_1:+50946529 None:intergenic
TCAGTGACCTCGTGAGTTTC+AGG 0.204412 4_1:+50946595 None:intergenic
TTTCCCAAAATTTATGTCTT+TGG 0.247451 4_1:+50947436 None:intergenic
ACCGACATCAATTAGTTTCT+TGG 0.257794 4_1:+50946855 None:intergenic
CTGCGGTTACAAGGCTAATT+AGG 0.267951 4_1:-50946723 Msa0553700:CDS
CTTTCAAAGTTGAGTAATTT+GGG 0.299469 4_1:+50946530 None:intergenic
TCAGCAGGTGCATTTCCATC+TGG 0.302312 4_1:+50947516 None:intergenic
TATAAAGGCAACCATCTTCT+TGG 0.307468 4_1:+50947107 None:intergenic
TGAAGTAGCCCGGAGGTTGC+AGG 0.313936 4_1:+50947163 None:intergenic
CCGTGATGAGGTTGTTAATA+TGG 0.329122 4_1:-50947058 Msa0553700:CDS
CCTCATCACGGACTCGAATT+CGG 0.339678 4_1:+50947070 None:intergenic
TTCTTGAAGGAACTGAAGTT+TGG 0.345695 4_1:-50946379 Msa0553700:CDS
GCGCTGGGCCCTGCAACCTC+CGG 0.353029 4_1:-50947172 Msa0553700:CDS
AAGATGGTTGCCTTTATAAC+AGG 0.354888 4_1:-50947102 Msa0553700:CDS
CCTGGTGTGACTGTTGATTC+TGG 0.363701 4_1:+50946775 None:intergenic
GAATGTTGTCGATAGTTATC+TGG 0.365092 4_1:-50946626 Msa0553700:CDS
ATTCTCCAAGTGCACCCTTC+TGG 0.370742 4_1:+50946960 None:intergenic
TGGAGCATTGGCTTCTTCCT+AGG 0.375688 4_1:-50946651 Msa0553700:CDS
CTCATCACGGACTCGAATTC+GGG 0.375743 4_1:+50947071 None:intergenic
TACTTCACAGCTTGGCATAT+TGG 0.377050 4_1:-50947147 Msa0553700:CDS
CAGCAGGTGCATTTCCATCT+GGG 0.382043 4_1:+50947517 None:intergenic
CCGACATCAATTAGTTTCTT+GGG 0.382092 4_1:+50946856 None:intergenic
GGGTGCACTTGGAGAATATA+TGG 0.383844 4_1:-50946954 Msa0553700:CDS
AAGATGATGAGAACATGTTT+AGG 0.387407 4_1:-50947218 Msa0553700:CDS
CAGTAGCAACTTGCCAATAC+TGG 0.390437 4_1:-50946894 Msa0553700:CDS
GGTGCATTTCCATCTGGGTT+GGG 0.393200 4_1:+50947522 None:intergenic
GGCAGGGATACCTGTTATAA+AGG 0.401328 4_1:+50947092 None:intergenic
GTTTCTCTCGGCTCGGTGCT+CGG 0.405888 4_1:-50946834 Msa0553700:CDS
GTTGGGCAGTTCAAGGATAT+AGG 0.408153 4_1:-50947405 Msa0553700:CDS
CCCCTTATCTGAGGTAAAAC+AGG 0.409550 4_1:-50947343 Msa0553700:CDS
CGCTGGGCCCTGCAACCTCC+GGG 0.413953 4_1:-50947171 Msa0553700:CDS
GCAAAATGAAAGCTTCTTGA+AGG 0.425222 4_1:-50946392 Msa0553700:CDS
TGTTAAAACTTCCAAGAAGA+TGG 0.425379 4_1:-50947118 Msa0553700:CDS
ACCTTCCTAACCTCTATGAA+TGG 0.426427 4_1:-50947311 Msa0553700:CDS
ATATCCTTGAACTGCCCAAC+AGG 0.427798 4_1:+50947408 None:intergenic
TTGGGCAGTTCAAGGATATA+GGG 0.438419 4_1:-50947404 Msa0553700:CDS
AACATAATTGTTAGCAAGAA+GGG 0.443843 4_1:+50947242 None:intergenic
ATCTCTACAACTACCGAGTA+AGG 0.445048 4_1:-50946330 Msa0553700:CDS
ACACTTCCTTCTAGTATCCT+TGG 0.449112 4_1:-50946556 Msa0553700:CDS
CAACATAATTGTTAGCAAGA+AGG 0.456558 4_1:+50947241 None:intergenic
GGTGGTTCGATAGGACCTTC+AGG 0.457527 4_1:+50947369 None:intergenic
TAGAGGTTAGGAAGGTTGTA+TGG 0.462978 4_1:+50947318 None:intergenic
CATTGAAGTCATCAGAGCTT+GGG 0.467422 4_1:-50946303 Msa0553700:CDS
GTTGATAGCAATCCTTCCTC+TGG 0.471116 4_1:-50947567 Msa0553700:CDS
GGGTTGCCAAGGATACTAGA+AGG 0.472607 4_1:+50946550 None:intergenic
TCAACCTGTTGGGCAGTTCA+AGG 0.473546 4_1:-50947412 Msa0553700:CDS
TTCGAAGGAATTTCTGCGCT+GGG 0.475576 4_1:-50947187 Msa0553700:CDS
CACACCAGGGTTTAGAAAGA+TGG 0.478975 4_1:-50946761 Msa0553700:CDS
AGGTGCATTTCCATCTGGGT+TGG 0.483616 4_1:+50947521 None:intergenic
TTTGGGAAACTCAACCTGTT+GGG 0.485400 4_1:-50947422 Msa0553700:CDS
CAGTATTGGCAAGTTGCTAC+TGG 0.490516 4_1:+50946895 None:intergenic
TCAAAGATCTGTGCCAGTAT+TGG 0.491976 4_1:+50946881 None:intergenic
GTCACCTCTTTGATCATGAC+AGG 0.495174 4_1:+50946982 None:intergenic
GTAACCCATTCATAGAGGTT+AGG 0.503092 4_1:+50947306 None:intergenic
CATTCATCAGCTGAAGCAAA+GGG 0.503326 4_1:+50946473 None:intergenic
GGTGACCAGAAGGGTGCACT+TGG 0.504257 4_1:-50946965 Msa0553700:CDS
TTGAGTAATTTGGGTTGCCA+AGG 0.505565 4_1:+50946539 None:intergenic
ATGATGTTCCTGCGGTTACA+AGG 0.508314 4_1:-50946732 Msa0553700:CDS
CCTTCCTAACCTCTATGAAT+GGG 0.513056 4_1:-50947310 Msa0553700:CDS
GGAGCATTGGCTTCTTCCTA+GGG 0.513324 4_1:-50946650 Msa0553700:CDS
GCATTGAAGTCATCAGAGCT+TGG 0.516250 4_1:-50946304 Msa0553700:CDS
ATTCGAAGGAATTTCTGCGC+TGG 0.519044 4_1:-50947188 Msa0553700:CDS
CTCCGGGCTACTTCACAGCT+TGG 0.520105 4_1:-50947155 Msa0553700:CDS
TCACGGACTCGAATTCGGGC+AGG 0.527541 4_1:+50947075 None:intergenic
CCCATTCATAGAGGTTAGGA+AGG 0.528278 4_1:+50947310 None:intergenic
TGCTGAAAGTGATCTTGCAT+TGG 0.528701 4_1:-50947499 Msa0553700:CDS
ACGAAAATGATGTGGAGCAT+TGG 0.530628 4_1:-50946663 Msa0553700:CDS
TGGCAAGTTGCTACTGGTGT+AGG 0.531802 4_1:+50946901 None:intergenic
CATGACAGGAGCAAGCCTCT+TGG 0.536419 4_1:+50946996 None:intergenic
TAATTGATGTCGGTTTCTCT+CGG 0.541266 4_1:-50946846 Msa0553700:CDS
ACTTCAATGCATGCCTTACT+CGG 0.542030 4_1:+50946317 None:intergenic
GAAGTAGCCCGGAGGTTGCA+GGG 0.543684 4_1:+50947164 None:intergenic
TCATTCATCAGCTGAAGCAA+AGG 0.547013 4_1:+50946472 None:intergenic
ATTTCCATCTTTCTAAACCC+TGG 0.548222 4_1:+50946757 None:intergenic
CACGGACTCGAATTCGGGCA+GGG 0.550332 4_1:+50947076 None:intergenic
AAGAATCACTCCTGCTGTGT+AGG 0.552278 4_1:+50946924 None:intergenic
GATGTCGGTTTCTCTCGGCT+CGG 0.552576 4_1:-50946841 Msa0553700:CDS
TGCCAAGCTGTGAAGTAGCC+CGG 0.554188 4_1:+50947153 None:intergenic
CTAATTAGCCTTGTAACCGC+AGG 0.559185 4_1:+50946724 None:intergenic
CCAGAATCAACAGTCACACC+AGG 0.560206 4_1:-50946775 Msa0553700:CDS
TTGTAACCGCAGGAACATCA+TGG 0.561294 4_1:+50946734 None:intergenic
CCCAAGAAACTAATTGATGT+CGG 0.561835 4_1:-50946856 Msa0553700:CDS
ATAGGACCTTCAGGCAAAGT+GGG 0.564234 4_1:+50947378 None:intergenic
TGGCAGGCTGCCTACACAGC+AGG 0.566798 4_1:-50946934 Msa0553700:CDS
CTATCGACAACATTCTCCCT+AGG 0.573804 4_1:+50946634 None:intergenic
TGATCAAAGAGGTGACCAGA+AGG 0.575360 4_1:-50946975 Msa0553700:CDS
AATGCAAGATCACTTTCAGC+AGG 0.575390 4_1:+50947501 None:intergenic
CACAAGTAACCCATTCATAG+AGG 0.576099 4_1:+50947301 None:intergenic
ACTCAAAATCCCAACCCAGA+TGG 0.582100 4_1:-50947531 Msa0553700:CDS
CTGAAGTTTGGACCAGGTGA+TGG 0.583002 4_1:-50946367 Msa0553700:CDS
GTTTAGGTTTAACTATTCGA+AGG 0.584434 4_1:-50947202 Msa0553700:CDS
GATAGGACCTTCAGGCAAAG+TGG 0.591235 4_1:+50947377 None:intergenic
GCACTTGGAGAATATATGGC+AGG 0.591925 4_1:-50946950 Msa0553700:CDS
GGGAACCCCACTTTGCCTGA+AGG 0.595352 4_1:-50947384 Msa0553700:CDS
AAGGAACTGAAGTTTGGACC+AGG 0.609351 4_1:-50946373 Msa0553700:CDS
TCTTCAGGTGATCCAGAGGA+AGG 0.613470 4_1:+50947555 None:intergenic
TAATGAAGTTTACCATCACC+TGG 0.622265 4_1:+50946355 None:intergenic
CCATATTAACAACCTCATCA+CGG 0.625479 4_1:+50947058 None:intergenic
ACAAGAAGCTTCGAACCAAG+AGG 0.628890 4_1:-50947011 Msa0553700:CDS
GATCAAAGAGGTGACCAGAA+GGG 0.633175 4_1:-50946974 Msa0553700:CDS
CCGAATTCGAGTCCGTGATG+AGG 0.640464 4_1:-50947070 Msa0553700:CDS
AGTCTCTTCAGGTGATCCAG+AGG 0.644950 4_1:+50947551 None:intergenic
TGCTCCTGTCATGATCAAAG+AGG 0.676350 4_1:-50946986 Msa0553700:CDS
GGAAATCCATGATGTTCCTG+CGG 0.677320 4_1:-50946740 Msa0553700:CDS
TAGGACCTTCAGGCAAAGTG+GGG 0.681811 4_1:+50947379 None:intergenic
CAGAATCAACAGTCACACCA+GGG 0.712272 4_1:-50946774 Msa0553700:CDS
ATTCATCAGCTGAAGCAAAG+GGG 0.718075 4_1:+50946474 None:intergenic
TGAAAGTCCTGAAACTCACG+AGG 0.726533 4_1:-50946602 Msa0553700:CDS
CAAGCTGTGAAGTAGCCCGG+AGG 0.761817 4_1:+50947156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTCCCAAAATTTATGTCTT+TGG + chr4_1:50946425-50946444 None:intergenic 25.0%
! AACATAATTGTTAGCAAGAA+GGG + chr4_1:50946619-50946638 None:intergenic 25.0%
! CTTTCAAAGTTGAGTAATTT+GGG + chr4_1:50947331-50947350 None:intergenic 25.0%
! TTTCCCAAAATTTATGTCTT+TGG + chr4_1:50946425-50946444 None:intergenic 25.0%
! AACATAATTGTTAGCAAGAA+GGG + chr4_1:50946619-50946638 None:intergenic 25.0%
! CTTTCAAAGTTGAGTAATTT+GGG + chr4_1:50947331-50947350 None:intergenic 25.0%
! TCGACCAAAGACATAAATTT+TGG - chr4_1:50946418-50946437 Msa0553700:CDS 30.0%
! CGACCAAAGACATAAATTTT+GGG - chr4_1:50946419-50946438 Msa0553700:CDS 30.0%
CAACATAATTGTTAGCAAGA+AGG + chr4_1:50946620-50946639 None:intergenic 30.0%
AAGATGATGAGAACATGTTT+AGG - chr4_1:50946640-50946659 Msa0553700:CDS 30.0%
! GTTTAGGTTTAACTATTCGA+AGG - chr4_1:50946656-50946675 Msa0553700:CDS 30.0%
TGTTAAAACTTCCAAGAAGA+TGG - chr4_1:50946740-50946759 Msa0553700:CDS 30.0%
! ACATCATTTTCGTCAAAATC+AGG + chr4_1:50947188-50947207 None:intergenic 30.0%
!! TGATTTTGACGAAAATGATG+TGG - chr4_1:50947187-50947206 Msa0553700:CDS 30.0%
GCTTTCAAAGTTGAGTAATT+TGG + chr4_1:50947332-50947351 None:intergenic 30.0%
! TTATGATGTTTTCAACGCTT+TGG - chr4_1:50947436-50947455 Msa0553700:CDS 30.0%
! TCGACCAAAGACATAAATTT+TGG - chr4_1:50946418-50946437 Msa0553700:CDS 30.0%
! CGACCAAAGACATAAATTTT+GGG - chr4_1:50946419-50946438 Msa0553700:CDS 30.0%
CAACATAATTGTTAGCAAGA+AGG + chr4_1:50946620-50946639 None:intergenic 30.0%
AAGATGATGAGAACATGTTT+AGG - chr4_1:50946640-50946659 Msa0553700:CDS 30.0%
! GTTTAGGTTTAACTATTCGA+AGG - chr4_1:50946656-50946675 Msa0553700:CDS 30.0%
TGTTAAAACTTCCAAGAAGA+TGG - chr4_1:50946740-50946759 Msa0553700:CDS 30.0%
! ACATCATTTTCGTCAAAATC+AGG + chr4_1:50947188-50947207 None:intergenic 30.0%
!! TGATTTTGACGAAAATGATG+TGG - chr4_1:50947187-50947206 Msa0553700:CDS 30.0%
GCTTTCAAAGTTGAGTAATT+TGG + chr4_1:50947332-50947351 None:intergenic 30.0%
! TTATGATGTTTTCAACGCTT+TGG - chr4_1:50947436-50947455 Msa0553700:CDS 30.0%
! TCCTGTTTTACCTCAGATAA+GGG + chr4_1:50946519-50946538 None:intergenic 35.0%
! TTCCTGTTTTACCTCAGATA+AGG + chr4_1:50946520-50946539 None:intergenic 35.0%
TATAAAGGCAACCATCTTCT+TGG + chr4_1:50946754-50946773 None:intergenic 35.0%
AAGATGGTTGCCTTTATAAC+AGG - chr4_1:50946756-50946775 Msa0553700:CDS 35.0%
CCATATTAACAACCTCATCA+CGG + chr4_1:50946803-50946822 None:intergenic 35.0%
! CCGACATCAATTAGTTTCTT+GGG + chr4_1:50947005-50947024 None:intergenic 35.0%
CCCAAGAAACTAATTGATGT+CGG - chr4_1:50947002-50947021 Msa0553700:CDS 35.0%
! ACCGACATCAATTAGTTTCT+TGG + chr4_1:50947006-50947025 None:intergenic 35.0%
!! TAATTGATGTCGGTTTCTCT+CGG - chr4_1:50947012-50947031 Msa0553700:CDS 35.0%
ATTTCCATCTTTCTAAACCC+TGG + chr4_1:50947104-50947123 None:intergenic 35.0%
GAATGTTGTCGATAGTTATC+TGG - chr4_1:50947232-50947251 Msa0553700:CDS 35.0%
GCAAAATGAAAGCTTCTTGA+AGG - chr4_1:50947466-50947485 Msa0553700:CDS 35.0%
TTCTTGAAGGAACTGAAGTT+TGG - chr4_1:50947479-50947498 Msa0553700:CDS 35.0%
TAATGAAGTTTACCATCACC+TGG + chr4_1:50947506-50947525 None:intergenic 35.0%
! TCCTGTTTTACCTCAGATAA+GGG + chr4_1:50946519-50946538 None:intergenic 35.0%
! TTCCTGTTTTACCTCAGATA+AGG + chr4_1:50946520-50946539 None:intergenic 35.0%
TATAAAGGCAACCATCTTCT+TGG + chr4_1:50946754-50946773 None:intergenic 35.0%
AAGATGGTTGCCTTTATAAC+AGG - chr4_1:50946756-50946775 Msa0553700:CDS 35.0%
CCATATTAACAACCTCATCA+CGG + chr4_1:50946803-50946822 None:intergenic 35.0%
! CCGACATCAATTAGTTTCTT+GGG + chr4_1:50947005-50947024 None:intergenic 35.0%
CCCAAGAAACTAATTGATGT+CGG - chr4_1:50947002-50947021 Msa0553700:CDS 35.0%
! ACCGACATCAATTAGTTTCT+TGG + chr4_1:50947006-50947025 None:intergenic 35.0%
!! TAATTGATGTCGGTTTCTCT+CGG - chr4_1:50947012-50947031 Msa0553700:CDS 35.0%
ATTTCCATCTTTCTAAACCC+TGG + chr4_1:50947104-50947123 None:intergenic 35.0%
GAATGTTGTCGATAGTTATC+TGG - chr4_1:50947232-50947251 Msa0553700:CDS 35.0%
GCAAAATGAAAGCTTCTTGA+AGG - chr4_1:50947466-50947485 Msa0553700:CDS 35.0%
TTCTTGAAGGAACTGAAGTT+TGG - chr4_1:50947479-50947498 Msa0553700:CDS 35.0%
TAATGAAGTTTACCATCACC+TGG + chr4_1:50947506-50947525 None:intergenic 35.0%
!! TTGGGATTTTGAGTCTCTTC+AGG + chr4_1:50946321-50946340 None:intergenic 40.0%
AATGCAAGATCACTTTCAGC+AGG + chr4_1:50946360-50946379 None:intergenic 40.0%
TGCTGAAAGTGATCTTGCAT+TGG - chr4_1:50946359-50946378 Msa0553700:CDS 40.0%
!! TTTTGGGAAACTCAACCTGT+TGG - chr4_1:50946435-50946454 Msa0553700:CDS 40.0%
TTTGGGAAACTCAACCTGTT+GGG - chr4_1:50946436-50946455 Msa0553700:CDS 40.0%
TTGGGCAGTTCAAGGATATA+GGG - chr4_1:50946454-50946473 Msa0553700:CDS 40.0%
! CTGTTTTACCTCAGATAAGG+GGG + chr4_1:50946517-50946536 None:intergenic 40.0%
! CCTGTTTTACCTCAGATAAG+GGG + chr4_1:50946518-50946537 None:intergenic 40.0%
TAGAGGTTAGGAAGGTTGTA+TGG + chr4_1:50946543-50946562 None:intergenic 40.0%
ACCTTCCTAACCTCTATGAA+TGG - chr4_1:50946547-50946566 Msa0553700:CDS 40.0%
CCTTCCTAACCTCTATGAAT+GGG - chr4_1:50946548-50946567 Msa0553700:CDS 40.0%
GTAACCCATTCATAGAGGTT+AGG + chr4_1:50946555-50946574 None:intergenic 40.0%
CACAAGTAACCCATTCATAG+AGG + chr4_1:50946560-50946579 None:intergenic 40.0%
TACTTCACAGCTTGGCATAT+TGG - chr4_1:50946711-50946730 Msa0553700:CDS 40.0%
CCGTGATGAGGTTGTTAATA+TGG - chr4_1:50946800-50946819 Msa0553700:CDS 40.0%
TCAAAGATCTGTGCCAGTAT+TGG + chr4_1:50946980-50946999 None:intergenic 40.0%
ACGAAAATGATGTGGAGCAT+TGG - chr4_1:50947195-50947214 Msa0553700:CDS 40.0%
ACACTTCCTTCTAGTATCCT+TGG - chr4_1:50947302-50947321 Msa0553700:CDS 40.0%
!! TTGAGTAATTTGGGTTGCCA+AGG + chr4_1:50947322-50947341 None:intergenic 40.0%
ATTCATCAGCTGAAGCAAAG+GGG + chr4_1:50947387-50947406 None:intergenic 40.0%
CATTCATCAGCTGAAGCAAA+GGG + chr4_1:50947388-50947407 None:intergenic 40.0%
TCATTCATCAGCTGAAGCAA+AGG + chr4_1:50947389-50947408 None:intergenic 40.0%
ATCTCTACAACTACCGAGTA+AGG - chr4_1:50947528-50947547 Msa0553700:CDS 40.0%
ACTTCAATGCATGCCTTACT+CGG + chr4_1:50947544-50947563 None:intergenic 40.0%
CATTGAAGTCATCAGAGCTT+GGG - chr4_1:50947555-50947574 Msa0553700:CDS 40.0%
!! TTGGGATTTTGAGTCTCTTC+AGG + chr4_1:50946321-50946340 None:intergenic 40.0%
AATGCAAGATCACTTTCAGC+AGG + chr4_1:50946360-50946379 None:intergenic 40.0%
TGCTGAAAGTGATCTTGCAT+TGG - chr4_1:50946359-50946378 Msa0553700:CDS 40.0%
!! TTTTGGGAAACTCAACCTGT+TGG - chr4_1:50946435-50946454 Msa0553700:CDS 40.0%
TTTGGGAAACTCAACCTGTT+GGG - chr4_1:50946436-50946455 Msa0553700:CDS 40.0%
TTGGGCAGTTCAAGGATATA+GGG - chr4_1:50946454-50946473 Msa0553700:CDS 40.0%
! CTGTTTTACCTCAGATAAGG+GGG + chr4_1:50946517-50946536 None:intergenic 40.0%
! CCTGTTTTACCTCAGATAAG+GGG + chr4_1:50946518-50946537 None:intergenic 40.0%
TAGAGGTTAGGAAGGTTGTA+TGG + chr4_1:50946543-50946562 None:intergenic 40.0%
ACCTTCCTAACCTCTATGAA+TGG - chr4_1:50946547-50946566 Msa0553700:CDS 40.0%
CCTTCCTAACCTCTATGAAT+GGG - chr4_1:50946548-50946567 Msa0553700:CDS 40.0%
GTAACCCATTCATAGAGGTT+AGG + chr4_1:50946555-50946574 None:intergenic 40.0%
CACAAGTAACCCATTCATAG+AGG + chr4_1:50946560-50946579 None:intergenic 40.0%
TACTTCACAGCTTGGCATAT+TGG - chr4_1:50946711-50946730 Msa0553700:CDS 40.0%
CCGTGATGAGGTTGTTAATA+TGG - chr4_1:50946800-50946819 Msa0553700:CDS 40.0%
TCAAAGATCTGTGCCAGTAT+TGG + chr4_1:50946980-50946999 None:intergenic 40.0%
ACGAAAATGATGTGGAGCAT+TGG - chr4_1:50947195-50947214 Msa0553700:CDS 40.0%
ACACTTCCTTCTAGTATCCT+TGG - chr4_1:50947302-50947321 Msa0553700:CDS 40.0%
!! TTGAGTAATTTGGGTTGCCA+AGG + chr4_1:50947322-50947341 None:intergenic 40.0%
ATTCATCAGCTGAAGCAAAG+GGG + chr4_1:50947387-50947406 None:intergenic 40.0%
CATTCATCAGCTGAAGCAAA+GGG + chr4_1:50947388-50947407 None:intergenic 40.0%
TCATTCATCAGCTGAAGCAA+AGG + chr4_1:50947389-50947408 None:intergenic 40.0%
ATCTCTACAACTACCGAGTA+AGG - chr4_1:50947528-50947547 Msa0553700:CDS 40.0%
ACTTCAATGCATGCCTTACT+CGG + chr4_1:50947544-50947563 None:intergenic 40.0%
CATTGAAGTCATCAGAGCTT+GGG - chr4_1:50947555-50947574 Msa0553700:CDS 40.0%
!! GTTGATAGCAATCCTTCCTC+TGG - chr4_1:50946291-50946310 Msa0553700:CDS 45.0%
ACTCAAAATCCCAACCCAGA+TGG - chr4_1:50946327-50946346 Msa0553700:CDS 45.0%
ATATCCTTGAACTGCCCAAC+AGG + chr4_1:50946453-50946472 None:intergenic 45.0%
GTTGGGCAGTTCAAGGATAT+AGG - chr4_1:50946453-50946472 Msa0553700:CDS 45.0%
ATAGGACCTTCAGGCAAAGT+GGG + chr4_1:50946483-50946502 None:intergenic 45.0%
TTTACCTCAGATAAGGGGGT+TGG + chr4_1:50946513-50946532 None:intergenic 45.0%
! CCCCTTATCTGAGGTAAAAC+AGG - chr4_1:50946515-50946534 Msa0553700:CDS 45.0%
CCCATTCATAGAGGTTAGGA+AGG + chr4_1:50946551-50946570 None:intergenic 45.0%
ATTCGAAGGAATTTCTGCGC+TGG - chr4_1:50946670-50946689 Msa0553700:CDS 45.0%
TTCGAAGGAATTTCTGCGCT+GGG - chr4_1:50946671-50946690 Msa0553700:CDS 45.0%
GGCAGGGATACCTGTTATAA+AGG + chr4_1:50946769-50946788 None:intergenic 45.0%
ACAAGAAGCTTCGAACCAAG+AGG - chr4_1:50946847-50946866 Msa0553700:CDS 45.0%
TGCTCCTGTCATGATCAAAG+AGG - chr4_1:50946872-50946891 Msa0553700:CDS 45.0%
GTCACCTCTTTGATCATGAC+AGG + chr4_1:50946879-50946898 None:intergenic 45.0%
TGATCAAAGAGGTGACCAGA+AGG - chr4_1:50946883-50946902 Msa0553700:CDS 45.0%
GATCAAAGAGGTGACCAGAA+GGG - chr4_1:50946884-50946903 Msa0553700:CDS 45.0%
GGGTGCACTTGGAGAATATA+TGG - chr4_1:50946904-50946923 Msa0553700:CDS 45.0%
GCACTTGGAGAATATATGGC+AGG - chr4_1:50946908-50946927 Msa0553700:CDS 45.0%
AAGAATCACTCCTGCTGTGT+AGG + chr4_1:50946937-50946956 None:intergenic 45.0%
!! CAGTATTGGCAAGTTGCTAC+TGG + chr4_1:50946966-50946985 None:intergenic 45.0%
CAGTAGCAACTTGCCAATAC+TGG - chr4_1:50946964-50946983 Msa0553700:CDS 45.0%
CAGAATCAACAGTCACACCA+GGG - chr4_1:50947084-50947103 Msa0553700:CDS 45.0%
CACACCAGGGTTTAGAAAGA+TGG - chr4_1:50947097-50947116 Msa0553700:CDS 45.0%
GGAAATCCATGATGTTCCTG+CGG - chr4_1:50947118-50947137 Msa0553700:CDS 45.0%
TTGTAACCGCAGGAACATCA+TGG + chr4_1:50947127-50947146 None:intergenic 45.0%
ATGATGTTCCTGCGGTTACA+AGG - chr4_1:50947126-50947145 Msa0553700:CDS 45.0%
!! CTAATTAGCCTTGTAACCGC+AGG + chr4_1:50947137-50947156 None:intergenic 45.0%
CTGCGGTTACAAGGCTAATT+AGG - chr4_1:50947135-50947154 Msa0553700:CDS 45.0%
CTATCGACAACATTCTCCCT+AGG + chr4_1:50947227-50947246 None:intergenic 45.0%
TGAAAGTCCTGAAACTCACG+AGG - chr4_1:50947256-50947275 Msa0553700:CDS 45.0%
AAGGAACTGAAGTTTGGACC+AGG - chr4_1:50947485-50947504 Msa0553700:CDS 45.0%
GCATTGAAGTCATCAGAGCT+TGG - chr4_1:50947554-50947573 Msa0553700:CDS 45.0%
!! GTTGATAGCAATCCTTCCTC+TGG - chr4_1:50946291-50946310 Msa0553700:CDS 45.0%
ACTCAAAATCCCAACCCAGA+TGG - chr4_1:50946327-50946346 Msa0553700:CDS 45.0%
ATATCCTTGAACTGCCCAAC+AGG + chr4_1:50946453-50946472 None:intergenic 45.0%
GTTGGGCAGTTCAAGGATAT+AGG - chr4_1:50946453-50946472 Msa0553700:CDS 45.0%
ATAGGACCTTCAGGCAAAGT+GGG + chr4_1:50946483-50946502 None:intergenic 45.0%
TTTACCTCAGATAAGGGGGT+TGG + chr4_1:50946513-50946532 None:intergenic 45.0%
! CCCCTTATCTGAGGTAAAAC+AGG - chr4_1:50946515-50946534 Msa0553700:CDS 45.0%
CCCATTCATAGAGGTTAGGA+AGG + chr4_1:50946551-50946570 None:intergenic 45.0%
ATTCGAAGGAATTTCTGCGC+TGG - chr4_1:50946670-50946689 Msa0553700:CDS 45.0%
TTCGAAGGAATTTCTGCGCT+GGG - chr4_1:50946671-50946690 Msa0553700:CDS 45.0%
GGCAGGGATACCTGTTATAA+AGG + chr4_1:50946769-50946788 None:intergenic 45.0%
ACAAGAAGCTTCGAACCAAG+AGG - chr4_1:50946847-50946866 Msa0553700:CDS 45.0%
TGCTCCTGTCATGATCAAAG+AGG - chr4_1:50946872-50946891 Msa0553700:CDS 45.0%
GTCACCTCTTTGATCATGAC+AGG + chr4_1:50946879-50946898 None:intergenic 45.0%
TGATCAAAGAGGTGACCAGA+AGG - chr4_1:50946883-50946902 Msa0553700:CDS 45.0%
GATCAAAGAGGTGACCAGAA+GGG - chr4_1:50946884-50946903 Msa0553700:CDS 45.0%
GGGTGCACTTGGAGAATATA+TGG - chr4_1:50946904-50946923 Msa0553700:CDS 45.0%
GCACTTGGAGAATATATGGC+AGG - chr4_1:50946908-50946927 Msa0553700:CDS 45.0%
AAGAATCACTCCTGCTGTGT+AGG + chr4_1:50946937-50946956 None:intergenic 45.0%
!! CAGTATTGGCAAGTTGCTAC+TGG + chr4_1:50946966-50946985 None:intergenic 45.0%
CAGTAGCAACTTGCCAATAC+TGG - chr4_1:50946964-50946983 Msa0553700:CDS 45.0%
CAGAATCAACAGTCACACCA+GGG - chr4_1:50947084-50947103 Msa0553700:CDS 45.0%
CACACCAGGGTTTAGAAAGA+TGG - chr4_1:50947097-50947116 Msa0553700:CDS 45.0%
GGAAATCCATGATGTTCCTG+CGG - chr4_1:50947118-50947137 Msa0553700:CDS 45.0%
TTGTAACCGCAGGAACATCA+TGG + chr4_1:50947127-50947146 None:intergenic 45.0%
ATGATGTTCCTGCGGTTACA+AGG - chr4_1:50947126-50947145 Msa0553700:CDS 45.0%
!! CTAATTAGCCTTGTAACCGC+AGG + chr4_1:50947137-50947156 None:intergenic 45.0%
CTGCGGTTACAAGGCTAATT+AGG - chr4_1:50947135-50947154 Msa0553700:CDS 45.0%
CTATCGACAACATTCTCCCT+AGG + chr4_1:50947227-50947246 None:intergenic 45.0%
TGAAAGTCCTGAAACTCACG+AGG - chr4_1:50947256-50947275 Msa0553700:CDS 45.0%
AAGGAACTGAAGTTTGGACC+AGG - chr4_1:50947485-50947504 Msa0553700:CDS 45.0%
GCATTGAAGTCATCAGAGCT+TGG - chr4_1:50947554-50947573 Msa0553700:CDS 45.0%
TCTTCAGGTGATCCAGAGGA+AGG + chr4_1:50946306-50946325 None:intergenic 50.0%
AGTCTCTTCAGGTGATCCAG+AGG + chr4_1:50946310-50946329 None:intergenic 50.0%
GGTGCATTTCCATCTGGGTT+GGG + chr4_1:50946339-50946358 None:intergenic 50.0%
AGGTGCATTTCCATCTGGGT+TGG + chr4_1:50946340-50946359 None:intergenic 50.0%
CAGCAGGTGCATTTCCATCT+GGG + chr4_1:50946344-50946363 None:intergenic 50.0%
TCAGCAGGTGCATTTCCATC+TGG + chr4_1:50946345-50946364 None:intergenic 50.0%
TCAACCTGTTGGGCAGTTCA+AGG - chr4_1:50946446-50946465 Msa0553700:CDS 50.0%
TAGGACCTTCAGGCAAAGTG+GGG + chr4_1:50946482-50946501 None:intergenic 50.0%
GATAGGACCTTCAGGCAAAG+TGG + chr4_1:50946484-50946503 None:intergenic 50.0%
CTCATCACGGACTCGAATTC+GGG + chr4_1:50946790-50946809 None:intergenic 50.0%
CCTCATCACGGACTCGAATT+CGG + chr4_1:50946791-50946810 None:intergenic 50.0%
ATTCTCCAAGTGCACCCTTC+TGG + chr4_1:50946901-50946920 None:intergenic 50.0%
TGGCAAGTTGCTACTGGTGT+AGG + chr4_1:50946960-50946979 None:intergenic 50.0%
!! CCTGGTGTGACTGTTGATTC+TGG + chr4_1:50947086-50947105 None:intergenic 50.0%
CCAGAATCAACAGTCACACC+AGG - chr4_1:50947083-50947102 Msa0553700:CDS 50.0%
!! TGGAGCATTGGCTTCTTCCT+AGG - chr4_1:50947207-50947226 Msa0553700:CDS 50.0%
!! GGAGCATTGGCTTCTTCCTA+GGG - chr4_1:50947208-50947227 Msa0553700:CDS 50.0%
TCAGTGACCTCGTGAGTTTC+AGG + chr4_1:50947266-50947285 None:intergenic 50.0%
GGGTTGCCAAGGATACTAGA+AGG + chr4_1:50947311-50947330 None:intergenic 50.0%
CTGAAGTTTGGACCAGGTGA+TGG - chr4_1:50947491-50947510 Msa0553700:CDS 50.0%
TCTTCAGGTGATCCAGAGGA+AGG + chr4_1:50946306-50946325 None:intergenic 50.0%
AGTCTCTTCAGGTGATCCAG+AGG + chr4_1:50946310-50946329 None:intergenic 50.0%
GGTGCATTTCCATCTGGGTT+GGG + chr4_1:50946339-50946358 None:intergenic 50.0%
AGGTGCATTTCCATCTGGGT+TGG + chr4_1:50946340-50946359 None:intergenic 50.0%
CAGCAGGTGCATTTCCATCT+GGG + chr4_1:50946344-50946363 None:intergenic 50.0%
TCAGCAGGTGCATTTCCATC+TGG + chr4_1:50946345-50946364 None:intergenic 50.0%
TCAACCTGTTGGGCAGTTCA+AGG - chr4_1:50946446-50946465 Msa0553700:CDS 50.0%
TAGGACCTTCAGGCAAAGTG+GGG + chr4_1:50946482-50946501 None:intergenic 50.0%
GATAGGACCTTCAGGCAAAG+TGG + chr4_1:50946484-50946503 None:intergenic 50.0%
CTCATCACGGACTCGAATTC+GGG + chr4_1:50946790-50946809 None:intergenic 50.0%
CCTCATCACGGACTCGAATT+CGG + chr4_1:50946791-50946810 None:intergenic 50.0%
ATTCTCCAAGTGCACCCTTC+TGG + chr4_1:50946901-50946920 None:intergenic 50.0%
TGGCAAGTTGCTACTGGTGT+AGG + chr4_1:50946960-50946979 None:intergenic 50.0%
!! CCTGGTGTGACTGTTGATTC+TGG + chr4_1:50947086-50947105 None:intergenic 50.0%
CCAGAATCAACAGTCACACC+AGG - chr4_1:50947083-50947102 Msa0553700:CDS 50.0%
!! TGGAGCATTGGCTTCTTCCT+AGG - chr4_1:50947207-50947226 Msa0553700:CDS 50.0%
!! GGAGCATTGGCTTCTTCCTA+GGG - chr4_1:50947208-50947227 Msa0553700:CDS 50.0%
TCAGTGACCTCGTGAGTTTC+AGG + chr4_1:50947266-50947285 None:intergenic 50.0%
GGGTTGCCAAGGATACTAGA+AGG + chr4_1:50947311-50947330 None:intergenic 50.0%
CTGAAGTTTGGACCAGGTGA+TGG - chr4_1:50947491-50947510 Msa0553700:CDS 50.0%
GGTGGTTCGATAGGACCTTC+AGG + chr4_1:50946492-50946511 None:intergenic 55.0%
!! AAGGGGGTTGGTGGTTCGAT+AGG + chr4_1:50946501-50946520 None:intergenic 55.0%
ACCACCAACCCCCTTATCTG+AGG - chr4_1:50946506-50946525 Msa0553700:CDS 55.0%
ACCTCAGATAAGGGGGTTGG+TGG + chr4_1:50946510-50946529 None:intergenic 55.0%
TGCCAAGCTGTGAAGTAGCC+CGG + chr4_1:50946708-50946727 None:intergenic 55.0%
CCGAATTCGAGTCCGTGATG+AGG - chr4_1:50946788-50946807 Msa0553700:CDS 55.0%
CATGACAGGAGCAAGCCTCT+TGG + chr4_1:50946865-50946884 None:intergenic 55.0%
!! GATGTCGGTTTCTCTCGGCT+CGG - chr4_1:50947017-50947036 Msa0553700:CDS 55.0%
GGTGGTTCGATAGGACCTTC+AGG + chr4_1:50946492-50946511 None:intergenic 55.0%
!! AAGGGGGTTGGTGGTTCGAT+AGG + chr4_1:50946501-50946520 None:intergenic 55.0%
ACCACCAACCCCCTTATCTG+AGG - chr4_1:50946506-50946525 Msa0553700:CDS 55.0%
ACCTCAGATAAGGGGGTTGG+TGG + chr4_1:50946510-50946529 None:intergenic 55.0%
TGCCAAGCTGTGAAGTAGCC+CGG + chr4_1:50946708-50946727 None:intergenic 55.0%
CCGAATTCGAGTCCGTGATG+AGG - chr4_1:50946788-50946807 Msa0553700:CDS 55.0%
CATGACAGGAGCAAGCCTCT+TGG + chr4_1:50946865-50946884 None:intergenic 55.0%
!! GATGTCGGTTTCTCTCGGCT+CGG - chr4_1:50947017-50947036 Msa0553700:CDS 55.0%
GGGAACCCCACTTTGCCTGA+AGG - chr4_1:50946474-50946493 Msa0553700:CDS 60.0%
GAAGTAGCCCGGAGGTTGCA+GGG + chr4_1:50946697-50946716 None:intergenic 60.0%
TGAAGTAGCCCGGAGGTTGC+AGG + chr4_1:50946698-50946717 None:intergenic 60.0%
CAAGCTGTGAAGTAGCCCGG+AGG + chr4_1:50946705-50946724 None:intergenic 60.0%
CTCCGGGCTACTTCACAGCT+TGG - chr4_1:50946703-50946722 Msa0553700:CDS 60.0%
CACGGACTCGAATTCGGGCA+GGG + chr4_1:50946785-50946804 None:intergenic 60.0%
TCACGGACTCGAATTCGGGC+AGG + chr4_1:50946786-50946805 None:intergenic 60.0%
! GGTGACCAGAAGGGTGCACT+TGG - chr4_1:50946893-50946912 Msa0553700:CDS 60.0%
!! GTTTCTCTCGGCTCGGTGCT+CGG - chr4_1:50947024-50947043 Msa0553700:CDS 60.0%
GGGAACCCCACTTTGCCTGA+AGG - chr4_1:50946474-50946493 Msa0553700:CDS 60.0%
GAAGTAGCCCGGAGGTTGCA+GGG + chr4_1:50946697-50946716 None:intergenic 60.0%
TGAAGTAGCCCGGAGGTTGC+AGG + chr4_1:50946698-50946717 None:intergenic 60.0%
CAAGCTGTGAAGTAGCCCGG+AGG + chr4_1:50946705-50946724 None:intergenic 60.0%
CTCCGGGCTACTTCACAGCT+TGG - chr4_1:50946703-50946722 Msa0553700:CDS 60.0%
CACGGACTCGAATTCGGGCA+GGG + chr4_1:50946785-50946804 None:intergenic 60.0%
TCACGGACTCGAATTCGGGC+AGG + chr4_1:50946786-50946805 None:intergenic 60.0%
! GGTGACCAGAAGGGTGCACT+TGG - chr4_1:50946893-50946912 Msa0553700:CDS 60.0%
!! GTTTCTCTCGGCTCGGTGCT+CGG - chr4_1:50947024-50947043 Msa0553700:CDS 60.0%
TGGCAGGCTGCCTACACAGC+AGG - chr4_1:50946924-50946943 Msa0553700:CDS 65.0%
TGGCAGGCTGCCTACACAGC+AGG - chr4_1:50946924-50946943 Msa0553700:CDS 65.0%
GCGCTGGGCCCTGCAACCTC+CGG - chr4_1:50946686-50946705 Msa0553700:CDS 75.0%
CGCTGGGCCCTGCAACCTCC+GGG - chr4_1:50946687-50946706 Msa0553700:CDS 75.0%
GCGCTGGGCCCTGCAACCTC+CGG - chr4_1:50946686-50946705 Msa0553700:CDS 75.0%
CGCTGGGCCCTGCAACCTCC+GGG - chr4_1:50946687-50946706 Msa0553700:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 50946288 50947592 50946288 ID=Msa0553700;Name=Msa0553700
chr4_1 mRNA 50946288 50947592 50946288 ID=Msa0553700-mRNA-1;Parent=Msa0553700;Name=Msa0553700-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|434
chr4_1 exon 50946288 50947592 50946288 ID=Msa0553700-mRNA-1:exon:14493;Parent=Msa0553700-mRNA-1
chr4_1 CDS 50946288 50947592 50946288 ID=Msa0553700-mRNA-1:cds;Parent=Msa0553700-mRNA-1
Gene Sequence

>Msa0553700

ATGGTTGATAGCAATCCTTCCTCTGGATCACCTGAAGAGACTCAAAATCCCAACCCAGATGGAAATGCACCTGCTGAAAGTGATCTTGCATTGGATAATCTAGCACAAAAAGTTCAAGAATCTCTATCTATCGACCAAAGACATAAATTTTGGGAAACTCAACCTGTTGGGCAGTTCAAGGATATAGGGAACCCCACTTTGCCTGAAGGTCCTATCGAACCACCAACCCCCTTATCTGAGGTAAAACAGGAACCATACAACCTTCCTAACCTCTATGAATGGGTTACTTGTGACATTCATGACGAGCAGATGTGTGATGAGATATATACCCTTCTTGCTAACAATTATGTTGAAGATGATGAGAACATGTTTAGGTTTAACTATTCGAAGGAATTTCTGCGCTGGGCCCTGCAACCTCCGGGCTACTTCACAGCTTGGCATATTGGTGTTCGTGTTAAAACTTCCAAGAAGATGGTTGCCTTTATAACAGGTATCCCTGCCCGAATTCGAGTCCGTGATGAGGTTGTTAATATGGCAGAAATTAACTTTTTGTGTGTTCACAAGAAGCTTCGAACCAAGAGGCTTGCTCCTGTCATGATCAAAGAGGTGACCAGAAGGGTGCACTTGGAGAATATATGGCAGGCTGCCTACACAGCAGGAGTGATTCTTCCTACACCAGTAGCAACTTGCCAATACTGGCACAGATCTTTGAATCCCAAGAAACTAATTGATGTCGGTTTCTCTCGGCTCGGTGCTCGGATGACAATGAGTAGAACTATCAAACTTTACAAGCTACCAGAATCAACAGTCACACCAGGGTTTAGAAAGATGGAAATCCATGATGTTCCTGCGGTTACAAGGCTAATTAGGAATTATTTGAGTCAATTTATTGTTGCGCCTGATTTTGACGAAAATGATGTGGAGCATTGGCTTCTTCCTAGGGAGAATGTTGTCGATAGTTATCTGGTTGAAAGTCCTGAAACTCACGAGGTCACTGACTTTTGTAGTTTTTACACACTTCCTTCTAGTATCCTTGGCAACCCAAATTACTCAACTTTGAAAGCAGCATACTCATTTTACAATGTTTCAACAGCTACCCCTTTGCTTCAGCTGATGAATGATGCTCTCATTGTAGCGAAACAGAAAGATTATGATGTTTTCAACGCTTTGGACGTCATGCAAAATGAAAGCTTCTTGAAGGAACTGAAGTTTGGACCAGGTGATGGTAAACTTCATTATTATCTCTACAACTACCGAGTAAGGCATGCATTGAAGTCATCAGAGCTTGGGCTTGTGCTTCTGTAG

Protein sequence

>Msa0553700

MVDSNPSSGSPEETQNPNPDGNAPAESDLALDNLAQKVQESLSIDQRHKFWETQPVGQFKDIGNPTLPEGPIEPPTPLSEVKQEPYNLPNLYEWVTCDIHDEQMCDEIYTLLANNYVEDDENMFRFNYSKEFLRWALQPPGYFTAWHIGVRVKTSKKMVAFITGIPARIRVRDEVVNMAEINFLCVHKKLRTKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPVATCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPESTVTPGFRKMEIHDVPAVTRLIRNYLSQFIVAPDFDENDVEHWLLPRENVVDSYLVESPETHEVTDFCSFYTLPSSILGNPNYSTLKAAYSFYNVSTATPLLQLMNDALIVAKQKDYDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRVRHALKSSELGLVLL*