AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607750 MtrunA17_Chr4g0039421 99.091 440 4 0 1 440 22 461 0.0 913
Msa0607750 MtrunA17_Chr2g0299701 80.907 419 76 1 26 440 4 422 0.0 723
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607750 AT5G57020.1 79.032 434 91 0 7 440 1 434 0.0 738
Msa0607750 AT2G44175.1 42.391 92 48 1 34 125 10 96 2.65e-18 80.9

Find 121 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACCAAAGACATAAATTT+TGG 0.100981 4_2:-54700496 Msa0607750:CDS
TTCCTTCTCAGAGGCAATTC+TGG 0.170358 4_2:-54699180 Msa0607750:intron
GCTTTCAAAGTTGAGTAATT+TGG 0.173591 4_2:+54699585 None:intergenic
TGCTTCTGTAGTTCAAATTT+TGG 0.184482 4_2:-54699332 Msa0607750:exon
TCAGTGACCTCGTGAGTTTC+AGG 0.204412 4_2:+54699651 None:intergenic
TTTCCCAAAATTTATGTCTT+TGG 0.247451 4_2:+54700492 None:intergenic
ACCGACATCAATTAGTTTCT+TGG 0.257794 4_2:+54699911 None:intergenic
CTGCGGTTACAAGGCTAATT+AGG 0.267951 4_2:-54699779 Msa0607750:CDS
CTTTCAAAGTTGAGTAATTT+GGG 0.299469 4_2:+54699586 None:intergenic
TCAGCAGGTGCATTTCCATC+TGG 0.302312 4_2:+54700572 None:intergenic
TATAAAGGCAACCATCTTCT+TGG 0.307468 4_2:+54700163 None:intergenic
TGAAGTAGCCCGGAGGTTGC+AGG 0.313936 4_2:+54700219 None:intergenic
CCGTGATGAGGTTGTTAATA+TGG 0.329122 4_2:-54700114 Msa0607750:CDS
CATCTTGAGTTTCCATTTGA+AGG 0.331516 4_2:+54698972 None:intergenic
CCTCATCACGGACTCGAATT+CGG 0.339678 4_2:+54700126 None:intergenic
TTCTTGAAGGAACTGAAGTT+TGG 0.345695 4_2:-54699435 Msa0607750:CDS
GCGCTGGGCCCTGCAACCTC+CGG 0.353029 4_2:-54700228 Msa0607750:CDS
AAGATGGTTGCCTTTATAAC+AGG 0.354888 4_2:-54700158 Msa0607750:CDS
TTACGAGAGAACAATCAAAT+TGG 0.363419 4_2:+54698906 None:intergenic
CCTGGTGTGACTGTTGATTC+TGG 0.363701 4_2:+54699831 None:intergenic
GAATGTTGTCGATAGTTATC+TGG 0.365092 4_2:-54699682 Msa0607750:CDS
ATTCTCCAAGTGCACCCTTC+TGG 0.370742 4_2:+54700016 None:intergenic
TGGAGCATTGGCTTCTTCCT+AGG 0.375688 4_2:-54699707 Msa0607750:CDS
CTCATCACGGACTCGAATTC+GGG 0.375743 4_2:+54700127 None:intergenic
TACTTCACAGCTTGGCATAT+TGG 0.377050 4_2:-54700203 Msa0607750:CDS
CAGCAGGTGCATTTCCATCT+GGG 0.382043 4_2:+54700573 None:intergenic
CCGACATCAATTAGTTTCTT+GGG 0.382092 4_2:+54699912 None:intergenic
GGGTGCACTTGGAGAATATA+TGG 0.383844 4_2:-54700010 Msa0607750:CDS
AAGATGATGAGAACATGTTT+AGG 0.387407 4_2:-54700274 Msa0607750:CDS
CAGTAGCAACTTGCCAATAC+TGG 0.390437 4_2:-54699950 Msa0607750:CDS
GGTGCATTTCCATCTGGGTT+GGG 0.393200 4_2:+54700578 None:intergenic
GGCAGGGATACCTGTTATAA+AGG 0.401328 4_2:+54700148 None:intergenic
GTTTCTCTCGGCTCGGTGCT+CGG 0.405888 4_2:-54699890 Msa0607750:CDS
GTTGGGCAGTTCAAGGATAT+AGG 0.408153 4_2:-54700461 Msa0607750:CDS
CCCCTTATCTGAGGTAAAAC+AGG 0.409550 4_2:-54700399 Msa0607750:CDS
CGCTGGGCCCTGCAACCTCC+GGG 0.413953 4_2:-54700227 Msa0607750:CDS
GCAAAATGAAAGCTTCTTGA+AGG 0.425222 4_2:-54699448 Msa0607750:CDS
TGTTAAAACTTCCAAGAAGA+TGG 0.425379 4_2:-54700174 Msa0607750:CDS
ACCTTCCTAACCTCTATGAA+TGG 0.426427 4_2:-54700367 Msa0607750:CDS
ATATCCTTGAACTGCCCAAC+AGG 0.427798 4_2:+54700464 None:intergenic
TTGGGCAGTTCAAGGATATA+GGG 0.438419 4_2:-54700460 Msa0607750:CDS
CGATCCTTCACTCCTTCAAA+TGG 0.438597 4_2:-54698984 Msa0607750:three_prime_UTR
ATCTCTACAACTACCGAGTA+AGG 0.445048 4_2:-54699386 Msa0607750:CDS
ACACTTCCTTCTAGTATCCT+TGG 0.449112 4_2:-54699612 Msa0607750:CDS
CAACATAATTATTAGCAAGA+AGG 0.456558 4_2:+54700297 None:intergenic
GGTGGTTCGATAGGACCTTC+AGG 0.457527 4_2:+54700425 None:intergenic
TAGAGGTTAGGAAGGTTGTA+TGG 0.462978 4_2:+54700374 None:intergenic
CATTGAAGTCATCAGAGCTT+GGG 0.467422 4_2:-54699359 Msa0607750:CDS
GTTGATAGCAATCCTTCCTC+TGG 0.471116 4_2:-54700623 Msa0607750:CDS
GGGTTGCCAAGGATACTAGA+AGG 0.472607 4_2:+54699606 None:intergenic
TCAACCTGTTGGGCAGTTCA+AGG 0.473546 4_2:-54700468 Msa0607750:CDS
TTCGAAGGAATTTCTGCGCT+GGG 0.475576 4_2:-54700243 Msa0607750:CDS
AACATAATTATTAGCAAGAA+GGG 0.476139 4_2:+54700298 None:intergenic
CACACCAGGGTTTAGAAAGA+TGG 0.478975 4_2:-54699817 Msa0607750:CDS
AGGTGCATTTCCATCTGGGT+TGG 0.483616 4_2:+54700577 None:intergenic
TTTGGGAAACTCAACCTGTT+GGG 0.485400 4_2:-54700478 Msa0607750:CDS
CTTCTCAGAGGCAATTCTGG+AGG 0.488634 4_2:-54699177 Msa0607750:intron
CAGTATTGGCAAGTTGCTAC+TGG 0.490516 4_2:+54699951 None:intergenic
TCAAAGATCTGTGCCAGTAT+TGG 0.491976 4_2:+54699937 None:intergenic
GTCACCTCTTTGATCATGAC+AGG 0.495174 4_2:+54700038 None:intergenic
GTAACCCATTCATAGAGGTT+AGG 0.503092 4_2:+54700362 None:intergenic
CATTCATCAGCTGAAGCAAA+GGG 0.503326 4_2:+54699529 None:intergenic
GGTGACCAGAAGGGTGCACT+TGG 0.504257 4_2:-54700021 Msa0607750:CDS
TTGAGTAATTTGGGTTGCCA+AGG 0.505565 4_2:+54699595 None:intergenic
ATGATGTTCCTGCGGTTACA+AGG 0.508314 4_2:-54699788 Msa0607750:CDS
CCTTCCTAACCTCTATGAAT+GGG 0.513056 4_2:-54700366 Msa0607750:CDS
GGAGCATTGGCTTCTTCCTA+GGG 0.513324 4_2:-54699706 Msa0607750:CDS
GCATTGAAGTCATCAGAGCT+TGG 0.516250 4_2:-54699360 Msa0607750:CDS
ATTCGAAGGAATTTCTGCGC+TGG 0.519044 4_2:-54700244 Msa0607750:CDS
CTCCGGGCTACTTCACAGCT+TGG 0.520105 4_2:-54700211 Msa0607750:CDS
TCACGGACTCGAATTCGGGC+AGG 0.527541 4_2:+54700131 None:intergenic
CCCATTCATAGAGGTTAGGA+AGG 0.528278 4_2:+54700366 None:intergenic
TGCTGAAAGTGATCTTGCAT+TGG 0.528701 4_2:-54700555 Msa0607750:CDS
GGATCGTCTAATCGAAGTCC+AGG 0.529646 4_2:+54699001 None:intergenic
ACGAAAATGATGTGGAGCAT+TGG 0.530628 4_2:-54699719 Msa0607750:CDS
TGGCAAGTTGCTACTGGTGT+AGG 0.531802 4_2:+54699957 None:intergenic
CATGACAGGAGCAAGCCTCT+TGG 0.536419 4_2:+54700052 None:intergenic
TAATTGATGTCGGTTTCTCT+CGG 0.541266 4_2:-54699902 Msa0607750:CDS
ACTTCAATGCATGCCTTACT+CGG 0.542030 4_2:+54699373 None:intergenic
GAAGTAGCCCGGAGGTTGCA+GGG 0.543684 4_2:+54700220 None:intergenic
TCATTCATCAGCTGAAGCAA+AGG 0.547013 4_2:+54699528 None:intergenic
ATTTCCATCTTTCTAAACCC+TGG 0.548222 4_2:+54699813 None:intergenic
CACGGACTCGAATTCGGGCA+GGG 0.550332 4_2:+54700132 None:intergenic
AAGAATCACTCCTGCTGTGT+AGG 0.552278 4_2:+54699980 None:intergenic
GATGTCGGTTTCTCTCGGCT+CGG 0.552576 4_2:-54699897 Msa0607750:CDS
TGCCAAGCTGTGAAGTAGCC+CGG 0.554188 4_2:+54700209 None:intergenic
TTCTCAGAGGCAATTCTGGA+GGG 0.554193 4_2:-54699176 Msa0607750:intron
GTTTCCATTTGAAGGAGTGA+AGG 0.558274 4_2:+54698980 None:intergenic
CTAATTAGCCTTGTAACCGC+AGG 0.559185 4_2:+54699780 None:intergenic
CCAGAATCAACAGTCACACC+AGG 0.560206 4_2:-54699831 Msa0607750:CDS
TTGTAACCGCAGGAACATCA+TGG 0.561294 4_2:+54699790 None:intergenic
CCCAAGAAACTAATTGATGT+CGG 0.561835 4_2:-54699912 Msa0607750:CDS
ATAGGACCTTCAGGCAAAGT+GGG 0.564234 4_2:+54700434 None:intergenic
TGCATAAGTGGTTGAACTTG+AGG 0.566049 4_2:-54699146 Msa0607750:three_prime_UTR
TGGCAGGCTGCCTACACAGC+AGG 0.566798 4_2:-54699990 Msa0607750:CDS
CTATCGACAACATTCTCCCT+AGG 0.573804 4_2:+54699690 None:intergenic
TGATCAAAGAGGTGACCAGA+AGG 0.575360 4_2:-54700031 Msa0607750:CDS
AATGCAAGATCACTTTCAGC+AGG 0.575390 4_2:+54700557 None:intergenic
CACAAGTAACCCATTCATAG+AGG 0.576099 4_2:+54700357 None:intergenic
ACTCAAAATCCCAACCCAGA+TGG 0.582100 4_2:-54700587 Msa0607750:CDS
CTGAAGTTTGGACCAGGTGA+TGG 0.583002 4_2:-54699423 Msa0607750:CDS
GTTTAGGTTTAACTATTCGA+AGG 0.584434 4_2:-54700258 Msa0607750:CDS
GAGGGTCAGTGATGCATAAG+TGG 0.584965 4_2:-54699158 Msa0607750:three_prime_UTR
GATAGGACCTTCAGGCAAAG+TGG 0.591235 4_2:+54700433 None:intergenic
GCACTTGGAGAATATATGGC+AGG 0.591925 4_2:-54700006 Msa0607750:CDS
GGGAACCCCACTTTGCCTGA+AGG 0.595352 4_2:-54700440 Msa0607750:CDS
AAGGAACTGAAGTTTGGACC+AGG 0.609351 4_2:-54699429 Msa0607750:CDS
TCTTCAGGTGATCCAGAGGA+AGG 0.613470 4_2:+54700611 None:intergenic
TAATGAAGTTTACCATCACC+TGG 0.622265 4_2:+54699411 None:intergenic
CCATATTAACAACCTCATCA+CGG 0.625479 4_2:+54700114 None:intergenic
ACAAGAAGCTTCGAACCAAG+AGG 0.628890 4_2:-54700067 Msa0607750:CDS
GATCAAAGAGGTGACCAGAA+GGG 0.633175 4_2:-54700030 Msa0607750:CDS
CCGAATTCGAGTCCGTGATG+AGG 0.640464 4_2:-54700126 Msa0607750:CDS
AGTCTCTTCAGGTGATCCAG+AGG 0.644950 4_2:+54700607 None:intergenic
TGCTCCTGTCATGATCAAAG+AGG 0.676350 4_2:-54700042 Msa0607750:CDS
GGAAATCCATGATGTTCCTG+CGG 0.677320 4_2:-54699796 Msa0607750:CDS
TAGGACCTTCAGGCAAAGTG+GGG 0.681811 4_2:+54700435 None:intergenic
CAGAATCAACAGTCACACCA+GGG 0.712272 4_2:-54699830 Msa0607750:CDS
ATTCATCAGCTGAAGCAAAG+GGG 0.718075 4_2:+54699530 None:intergenic
TGAAAGTCCTGAAACTCACG+AGG 0.726533 4_2:-54699658 Msa0607750:CDS
CAAGCTGTGAAGTAGCCCGG+AGG 0.761817 4_2:+54700212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAGAAGTTAAAA+TGG + chr4_2:54699940-54699959 None:intergenic 10.0%
!!! TTTTATCAAATGTTATTTTA+TGG - chr4_2:54702629-54702648 Msa0607750:intron 10.0%
!! AAAAATCACAAGATAAAAAA+AGG + chr4_2:54699456-54699475 None:intergenic 15.0%
!!! GTGATTTTTTCAAAAAAATT+TGG - chr4_2:54699467-54699486 Msa0607750:CDS 15.0%
!! TCAAATAATTTATCTCAATT+TGG - chr4_2:54699541-54699560 Msa0607750:CDS 15.0%
!! CTTTAATAGTGTTATATTAT+TGG + chr4_2:54700288-54700307 None:intergenic 15.0%
!! CAATAATATAACACTATTAA+AGG - chr4_2:54700286-54700305 Msa0607750:CDS 15.0%
!!! ATGAACATAATTTTTTAACT+AGG + chr4_2:54700480-54700499 None:intergenic 15.0%
!! AAGATACTTAAACTATAAAT+CGG - chr4_2:54700720-54700739 Msa0607750:intron 15.0%
!!! AGAGATAATATTTTTTATGT+GGG - chr4_2:54701839-54701858 Msa0607750:intron 15.0%
!! TAAGTAATAAAAAGATGGAA+TGG + chr4_2:54699145-54699164 None:intergenic 20.0%
!! TTGGATAAGTAATAAAAAGA+TGG + chr4_2:54699150-54699169 None:intergenic 20.0%
!! TTTATTACTTATCCAAACAA+TGG - chr4_2:54699154-54699173 Msa0607750:three_prime_UTR 20.0%
!! TTATCTCAATTTGGAAATTT+AGG - chr4_2:54699550-54699569 Msa0607750:CDS 20.0%
!! AAACCAAAAATCATTACAAA+AGG + chr4_2:54699804-54699823 None:intergenic 20.0%
!! GTCATTGAAAAAGATAAATA+TGG + chr4_2:54700225-54700244 None:intergenic 20.0%
!!! AACATAATTTTTTAACTAGG+AGG + chr4_2:54700477-54700496 None:intergenic 20.0%
!! TAGCATAAAAGCTTATTTAT+TGG + chr4_2:54701590-54701609 None:intergenic 20.0%
!!! GAGAGATAATATTTTTTATG+TGG - chr4_2:54701838-54701857 Msa0607750:intron 20.0%
!!! ATTTTTGATAGTTTGTATGT+TGG - chr4_2:54701883-54701902 Msa0607750:intron 20.0%
!!! TTTTCAGAAAGCATTTAAAA+TGG - chr4_2:54702668-54702687 Msa0607750:intron 20.0%
!! AACATAATTATTAGCAAGAA+GGG + chr4_2:54703018-54703037 None:intergenic 20.0%
!! CAAAAATAAAGCAAAACTTA+AGG + chr4_2:54704096-54704115 None:intergenic 20.0%
!!! TTATTTTTATTACATGATCC+TGG - chr4_2:54704294-54704313 Msa0607750:intron 20.0%
! AATATGGAAGAATGAAACAT+AGG - chr4_2:54698988-54699007 Msa0607750:three_prime_UTR 25.0%
! ATATGGAAGAATGAAACATA+GGG - chr4_2:54698989-54699008 Msa0607750:three_prime_UTR 25.0%
! AATGAAACATAGGGATATAA+TGG - chr4_2:54698998-54699017 Msa0607750:three_prime_UTR 25.0%
! AATAAAAAGATGGAATGGAA+TGG + chr4_2:54699140-54699159 None:intergenic 25.0%
!!! CTAATTAAGTTGTTTGTTGT+AGG + chr4_2:54699373-54699392 None:intergenic 25.0%
! CAACAAACAACTTAATTAGA+AGG - chr4_2:54699374-54699393 Msa0607750:CDS 25.0%
! AAATTAGATTAAGAGATGTG+CGG + chr4_2:54699594-54699613 None:intergenic 25.0%
!! AGTCCTTTTGTAATGATTTT+TGG - chr4_2:54699798-54699817 Msa0607750:CDS 25.0%
!!! TTTTTGGTTTTCCTCTTTTT+TGG - chr4_2:54699814-54699833 Msa0607750:CDS 25.0%
! TTCGCTAGTAAAACATAAAA+TGG + chr4_2:54699989-54700008 None:intergenic 25.0%
!!! AATGAGTTTGTTACATTTGA+AGG + chr4_2:54700199-54700218 None:intergenic 25.0%
!!! TGAGATTTTGGAAAGATTTT+TGG + chr4_2:54700326-54700345 None:intergenic 25.0%
!! ATAAAGAGAACATGAGATTT+TGG + chr4_2:54700338-54700357 None:intergenic 25.0%
! GTTCTCTTTATATATAGTGT+AGG - chr4_2:54700347-54700366 Msa0607750:CDS 25.0%
! AACATTTCCCATAGTTTAAT+TGG + chr4_2:54700538-54700557 None:intergenic 25.0%
!! AAATGTTAAACAGTGTCATT+GGG - chr4_2:54700551-54700570 Msa0607750:CDS 25.0%
!!! TAAAAGTAGTAGTTTTGCAT+GGG + chr4_2:54700664-54700683 None:intergenic 25.0%
!!! TTAAAAGTAGTAGTTTTGCA+TGG + chr4_2:54700665-54700684 None:intergenic 25.0%
!! GTATTATAGTCTTTTCAGTT+AGG + chr4_2:54700821-54700840 None:intergenic 25.0%
!! ATATTTTCGAAAGTTTGGTT+GGG - chr4_2:54700973-54700992 Msa0607750:intron 25.0%
!!! AATTTAAGACGACGTTTTTT+AGG + chr4_2:54701048-54701067 None:intergenic 25.0%
! AAAAAACGTCGTCTTAAATT+TGG - chr4_2:54701048-54701067 Msa0607750:intron 25.0%
! ATGAAATCTTTCGTAATTGT+GGG + chr4_2:54701414-54701433 None:intergenic 25.0%
! AATGAAATCTTTCGTAATTG+TGG + chr4_2:54701415-54701434 None:intergenic 25.0%
! AAGCTAACACGATTAATAAT+TGG + chr4_2:54701495-54701514 None:intergenic 25.0%
! AAAAATATTATCTCTCCCTT+CGG + chr4_2:54701834-54701853 None:intergenic 25.0%
!! TTTGATTTAGAAATTGGTCA+TGG + chr4_2:54702115-54702134 None:intergenic 25.0%
! ACCAATTTCTAAATCAAACA+GGG - chr4_2:54702117-54702136 Msa0607750:intron 25.0%
! ATTTGCAAATGCTAAAAAAC+GGG + chr4_2:54702167-54702186 None:intergenic 25.0%
! GATTTGCAAATGCTAAAAAA+CGG + chr4_2:54702168-54702187 None:intergenic 25.0%
! ATGTTTCAAGAGTTGAATAT+GGG + chr4_2:54702248-54702267 None:intergenic 25.0%
! AATGTTTCAAGAGTTGAATA+TGG + chr4_2:54702249-54702268 None:intergenic 25.0%
!!! AACTCTTGAAACATTAGTTT+TGG - chr4_2:54702254-54702273 Msa0607750:intron 25.0%
! TTAAACCAGTGATATAGTAT+TGG - chr4_2:54702458-54702477 Msa0607750:intron 25.0%
! ATTAACCAATACTATATCAC+TGG + chr4_2:54702466-54702485 None:intergenic 25.0%
! AAATTTCCCTAAACATTAGA+AGG + chr4_2:54702601-54702620 None:intergenic 25.0%
! TTTCCCAAAATTTATGTCTT+TGG + chr4_2:54702824-54702843 None:intergenic 25.0%
! CAACATAATTATTAGCAAGA+AGG + chr4_2:54703019-54703038 None:intergenic 25.0%
! CTTTCAAAGTTGAGTAATTT+GGG + chr4_2:54703730-54703749 None:intergenic 25.0%
!!! GTTCAAATTTTGGAGATTTA+TGG - chr4_2:54703991-54704010 Msa0607750:intron 25.0%
!!! AATTTTGGAGATTTATGGTA+TGG - chr4_2:54703996-54704015 Msa0607750:intron 25.0%
!! ATTTTTGTTCATGCTGATAA+TGG - chr4_2:54704209-54704228 Msa0607750:intron 25.0%
! TTTAGAATGTAGGCTATGTT+TGG + chr4_2:54699232-54699251 None:intergenic 30.0%
!! AGTGAACAACTTTAGAATGT+AGG + chr4_2:54699242-54699261 None:intergenic 30.0%
!! AAGTTGTTTGTTGTAGGAAT+AGG + chr4_2:54699367-54699386 None:intergenic 30.0%
!! TTTGGTTTAGTATTTCTAGC+TGG - chr4_2:54699485-54699504 Msa0607750:CDS 30.0%
! AAATTATTTGAAACTCGAGC+AGG + chr4_2:54699532-54699551 None:intergenic 30.0%
GCACATCTCTTAATCTAATT+TGG - chr4_2:54699593-54699612 Msa0607750:CDS 30.0%
! CTTAATCCACTTTCTTGTTT+GGG - chr4_2:54699775-54699794 Msa0607750:CDS 30.0%
!!! TTTTCCTCTTTTTTGGTTGT+CGG - chr4_2:54699821-54699840 Msa0607750:CDS 30.0%
CAGTTACATCAAATAACCAA+AGG + chr4_2:54699852-54699871 None:intergenic 30.0%
! TGTAACTGTACTATTTTACC+TGG - chr4_2:54699864-54699883 Msa0607750:CDS 30.0%
!! ACTATTTTACCTGGTTCTTT+TGG - chr4_2:54699873-54699892 Msa0607750:CDS 30.0%
CAATAAAAAGAGCGGAAAAA+CGG + chr4_2:54700031-54700050 None:intergenic 30.0%
! AGTGTTTAGAGAGATTTTTG+TGG + chr4_2:54700380-54700399 None:intergenic 30.0%
ATATCACCATCACACATTTA+AGG - chr4_2:54700438-54700457 Msa0607750:CDS 30.0%
! TTTAATTGGCATGCTTTGAA+GGG + chr4_2:54700524-54700543 None:intergenic 30.0%
AAAGCATGCCAATTAAACTA+TGG - chr4_2:54700527-54700546 Msa0607750:CDS 30.0%
AAGCATGCCAATTAAACTAT+GGG - chr4_2:54700528-54700547 Msa0607750:CDS 30.0%
GAAATGTTAAACAGTGTCAT+TGG - chr4_2:54700550-54700569 Msa0607750:CDS 30.0%
! AATGTTAAACAGTGTCATTG+GGG - chr4_2:54700552-54700571 Msa0607750:CDS 30.0%
! CATGGATATTTTCGAAAGTT+TGG - chr4_2:54700968-54700987 Msa0607750:intron 30.0%
! GATATTTTCGAAAGTTTGGT+TGG - chr4_2:54700972-54700991 Msa0607750:intron 30.0%
TAGTTGTGAGGTTAGTATAT+TGG + chr4_2:54701146-54701165 None:intergenic 30.0%
TGTAATTGCAAGGAAATCAA+AGG + chr4_2:54701311-54701330 None:intergenic 30.0%
ATAAACAGGTTGTAATTGCA+AGG + chr4_2:54701321-54701340 None:intergenic 30.0%
GAACGAAATCAAACATAAAC+AGG + chr4_2:54701335-54701354 None:intergenic 30.0%
TGAAATCTTTCGTAATTGTG+GGG + chr4_2:54701413-54701432 None:intergenic 30.0%
! AAAAGTGTGTTAACAAGACT+AGG - chr4_2:54701531-54701550 Msa0607750:intron 30.0%
AAAGTGTGTTAACAAGACTA+GGG - chr4_2:54701532-54701551 Msa0607750:intron 30.0%
CGAAAATAAACCAATCCAAA+CGG - chr4_2:54701725-54701744 Msa0607750:intron 30.0%
GAAAATAAACCAATCCAAAC+GGG - chr4_2:54701726-54701745 Msa0607750:intron 30.0%
GACCAATTTCTAAATCAAAC+AGG - chr4_2:54702116-54702135 Msa0607750:intron 30.0%
! ACCCTGTTTGATTTAGAAAT+TGG + chr4_2:54702121-54702140 None:intergenic 30.0%
AAATCAAACAGGGTACAAAA+AGG - chr4_2:54702127-54702146 Msa0607750:intron 30.0%
TTTGCAAATGCTAAAAAACG+GGG + chr4_2:54702166-54702185 None:intergenic 30.0%
! CCAATTGTTGACTATCATTA+GGG + chr4_2:54702198-54702217 None:intergenic 30.0%
! TCCAATTGTTGACTATCATT+AGG + chr4_2:54702199-54702218 None:intergenic 30.0%
CTCAATGATGTGAATAGAAT+TGG - chr4_2:54702487-54702506 Msa0607750:intron 30.0%
TTTGTAGCCTTCTAATGTTT+AGG - chr4_2:54702591-54702610 Msa0607750:intron 30.0%
TTGTAGCCTTCTAATGTTTA+GGG - chr4_2:54702592-54702611 Msa0607750:intron 30.0%
! TCGACCAAAGACATAAATTT+TGG - chr4_2:54702817-54702836 Msa0607750:intron 30.0%
! CGACCAAAGACATAAATTTT+GGG - chr4_2:54702818-54702837 Msa0607750:intron 30.0%
AAGATGATGAGAACATGTTT+AGG - chr4_2:54703039-54703058 Msa0607750:intron 30.0%
! GTTTAGGTTTAACTATTCGA+AGG - chr4_2:54703055-54703074 Msa0607750:intron 30.0%
TGTTAAAACTTCCAAGAAGA+TGG - chr4_2:54703139-54703158 Msa0607750:intron 30.0%
! ACATCATTTTCGTCAAAATC+AGG + chr4_2:54703587-54703606 None:intergenic 30.0%
!! TGATTTTGACGAAAATGATG+TGG - chr4_2:54703586-54703605 Msa0607750:intron 30.0%
GCTTTCAAAGTTGAGTAATT+TGG + chr4_2:54703731-54703750 None:intergenic 30.0%
! TTATGATGTTTTCAACGCTT+TGG - chr4_2:54703835-54703854 Msa0607750:intron 30.0%
! TGCTTCTGTAGTTCAAATTT+TGG - chr4_2:54703981-54704000 Msa0607750:intron 30.0%
CAAAACTTAAGGTCTAACAA+TGG + chr4_2:54704085-54704104 None:intergenic 30.0%
!!! AATTTTGATTTCCTTCTCAG+AGG - chr4_2:54704124-54704143 Msa0607750:intron 30.0%
TTACGAGAGAACAATCAAAT+TGG + chr4_2:54704410-54704429 None:intergenic 30.0%
AATTGATCCTCGTCATGATA+TGG - chr4_2:54698905-54698924 Msa0607750:three_prime_UTR 35.0%
! AAACATCATAGCAAAAGTGC+AGG + chr4_2:54698937-54698956 None:intergenic 35.0%
! CTTTTGTTACCCTCCAATTT+GGG + chr4_2:54699073-54699092 None:intergenic 35.0%
! ACTTTTGTTACCCTCCAATT+TGG + chr4_2:54699074-54699093 None:intergenic 35.0%
GTAACAAAAGTGAGAGTAAG+TGG - chr4_2:54699083-54699102 Msa0607750:three_prime_UTR 35.0%
AAAGATGGAATGGAATGGTA+TGG + chr4_2:54699135-54699154 None:intergenic 35.0%
TTGGATTGATGGAATGTGAT+GGG + chr4_2:54699213-54699232 None:intergenic 35.0%
TTTGGATTGATGGAATGTGA+TGG + chr4_2:54699214-54699233 None:intergenic 35.0%
AAACAAGGAGACTGATCTTA+AGG + chr4_2:54699327-54699346 None:intergenic 35.0%
TTAAGATCAGTCTCCTTGTT+TGG - chr4_2:54699326-54699345 Msa0607750:exon 35.0%
! AAATTAAGTTGCAATGCCAC+TGG - chr4_2:54699701-54699720 Msa0607750:CDS 35.0%
GCTTAATCCACTTTCTTGTT+TGG - chr4_2:54699774-54699793 Msa0607750:CDS 35.0%
CTATCTCCTTAAATGTGTGA+TGG + chr4_2:54700447-54700466 None:intergenic 35.0%
!! TTAATTGGCATGCTTTGAAG+GGG + chr4_2:54700523-54700542 None:intergenic 35.0%
GTTTAATTGGCATGCTTTGA+AGG + chr4_2:54700525-54700544 None:intergenic 35.0%
TTTCCTTAACAAGTGTCCTA+AGG - chr4_2:54700685-54700704 Msa0607750:intron 35.0%
!!! AGGAATGAGCATTTTTGGTT+GGG + chr4_2:54700801-54700820 None:intergenic 35.0%
!!! TAGGAATGAGCATTTTTGGT+TGG + chr4_2:54700802-54700821 None:intergenic 35.0%
! CAGTTAGGAATGAGCATTTT+TGG + chr4_2:54700806-54700825 None:intergenic 35.0%
!!! ACGTTTTTTAGGTAGAGTAG+AGG + chr4_2:54701037-54701056 None:intergenic 35.0%
TAAATTTGGACTGACGTGAA+TGG - chr4_2:54701062-54701081 Msa0607750:intron 35.0%
AAATTTGGACTGACGTGAAT+GGG - chr4_2:54701063-54701082 Msa0607750:intron 35.0%
TTGTGAGGTTAGTATATTGG+TGG + chr4_2:54701143-54701162 None:intergenic 35.0%
AAGTGTGTTAACAAGACTAG+GGG - chr4_2:54701533-54701552 Msa0607750:intron 35.0%
GAAAAATAAGCGAATCCAGA+CGG + chr4_2:54701559-54701578 None:intergenic 35.0%
ATGACAGAAAATTGTACCGA+AGG - chr4_2:54701815-54701834 Msa0607750:intron 35.0%
TGACAGAAAATTGTACCGAA+GGG - chr4_2:54701816-54701835 Msa0607750:intron 35.0%
TTGGACAAAAAGTTGTCTCA+TGG - chr4_2:54701902-54701921 Msa0607750:intron 35.0%
CATGGTACAAGGATCTTATA+GGG + chr4_2:54702030-54702049 None:intergenic 35.0%
ATCAGACAAAATAGGTAGCA+AGG + chr4_2:54702091-54702110 None:intergenic 35.0%
GTCATGGAATCAGACAAAAT+AGG + chr4_2:54702099-54702118 None:intergenic 35.0%
TTGCAAATGCTAAAAAACGG+GGG + chr4_2:54702165-54702184 None:intergenic 35.0%
CCCTAATGATAGTCAACAAT+TGG - chr4_2:54702195-54702214 Msa0607750:intron 35.0%
AGAATTGGACAGTAGTTGAT+TGG - chr4_2:54702502-54702521 Msa0607750:intron 35.0%
! TCCTGTTTTACCTCAGATAA+GGG + chr4_2:54702918-54702937 None:intergenic 35.0%
! TTCCTGTTTTACCTCAGATA+AGG + chr4_2:54702919-54702938 None:intergenic 35.0%
TATAAAGGCAACCATCTTCT+TGG + chr4_2:54703153-54703172 None:intergenic 35.0%
AAGATGGTTGCCTTTATAAC+AGG - chr4_2:54703155-54703174 Msa0607750:intron 35.0%
CCATATTAACAACCTCATCA+CGG + chr4_2:54703202-54703221 None:intergenic 35.0%
! CCGACATCAATTAGTTTCTT+GGG + chr4_2:54703404-54703423 None:intergenic 35.0%
CCCAAGAAACTAATTGATGT+CGG - chr4_2:54703401-54703420 Msa0607750:intron 35.0%
! ACCGACATCAATTAGTTTCT+TGG + chr4_2:54703405-54703424 None:intergenic 35.0%
!! TAATTGATGTCGGTTTCTCT+CGG - chr4_2:54703411-54703430 Msa0607750:intron 35.0%
ATTTCCATCTTTCTAAACCC+TGG + chr4_2:54703503-54703522 None:intergenic 35.0%
GAATGTTGTCGATAGTTATC+TGG - chr4_2:54703631-54703650 Msa0607750:intron 35.0%
GCAAAATGAAAGCTTCTTGA+AGG - chr4_2:54703865-54703884 Msa0607750:intron 35.0%
TAATGAAGTTTACCATCACC+TGG + chr4_2:54703905-54703924 None:intergenic 35.0%
! TTGTGCTGATAGACTTTGTA+TGG - chr4_2:54704040-54704059 Msa0607750:intron 35.0%
TTGTATGGTTGCATATGATG+TGG - chr4_2:54704055-54704074 Msa0607750:intron 35.0%
CAAAAATAGCGAACAGGAAT+TGG + chr4_2:54704196-54704215 None:intergenic 35.0%
CATGAACAAAAATAGCGAAC+AGG + chr4_2:54704202-54704221 None:intergenic 35.0%
CATCTTGAGTTTCCATTTGA+AGG + chr4_2:54704344-54704363 None:intergenic 35.0%
GTTATGTCCATATCATGACG+AGG + chr4_2:54698915-54698934 None:intergenic 40.0%
ACAAAAGTGAGAGTAAGTGG+TGG - chr4_2:54699086-54699105 Msa0607750:three_prime_UTR 40.0%
! GAGTAAGTGGTGGAATATGA+TGG - chr4_2:54699096-54699115 Msa0607750:three_prime_UTR 40.0%
TGGAATGGAATGGTATGGAA+TGG + chr4_2:54699130-54699149 None:intergenic 40.0%
TGGGCTTATGTTCCATTGTT+TGG + chr4_2:54699169-54699188 None:intergenic 40.0%
! TTGATGGAATGTGATGGGAT+GGG + chr4_2:54699208-54699227 None:intergenic 40.0%
! ATTGATGGAATGTGATGGGA+TGG + chr4_2:54699209-54699228 None:intergenic 40.0%
GTAGGCTATGTTTGGATTGA+TGG + chr4_2:54699224-54699243 None:intergenic 40.0%
GTCCAAGAGAACGATATTCT+AGG - chr4_2:54699272-54699291 Msa0607750:intron 40.0%
GACCTAGAATATCGTTCTCT+TGG + chr4_2:54699277-54699296 None:intergenic 40.0%
TGCGAAATAGATGCCAAACA+AGG + chr4_2:54699342-54699361 None:intergenic 40.0%
ATTCTTCAGCCATCTTTGTG+TGG - chr4_2:54699400-54699419 Msa0607750:CDS 40.0%
TTCTTCAGCCATCTTTGTGT+GGG - chr4_2:54699401-54699420 Msa0607750:CDS 40.0%
!! TAATTTGGCTTTCACGTGTG+TGG - chr4_2:54699608-54699627 Msa0607750:CDS 40.0%
!! AATTTGGCTTTCACGTGTGT+GGG - chr4_2:54699609-54699628 Msa0607750:CDS 40.0%
!!! GATCGCACTAGTTTTGCTTT+CGG - chr4_2:54699736-54699755 Msa0607750:CDS 40.0%
TTGCTTTCGGTTATCATACG+TGG - chr4_2:54699749-54699768 Msa0607750:CDS 40.0%
CGTCAGCACAATAAAAAGAG+CGG + chr4_2:54700039-54700058 None:intergenic 40.0%
! TGTGTGATGGTGATATCAGA+TGG + chr4_2:54700434-54700453 None:intergenic 40.0%
! AAACAGTGTCATTGGGGTAT+TGG - chr4_2:54700558-54700577 Msa0607750:CDS 40.0%
! TGTCCTTAGGACACTTGTTA+AGG + chr4_2:54700691-54700710 None:intergenic 40.0%
TCTTGCTAACAAGTGTCCTT+AGG + chr4_2:54700704-54700723 None:intergenic 40.0%
! GAGCAGAATTCTTGAGGTTT+TGG + chr4_2:54700774-54700793 None:intergenic 40.0%
GGTAAAGAGCAGAATTCTTG+AGG + chr4_2:54700780-54700799 None:intergenic 40.0%
AGCGTGACTCAAGTTACATA+GGG + chr4_2:54700844-54700863 None:intergenic 40.0%
TAGCGTGACTCAAGTTACAT+AGG + chr4_2:54700845-54700864 None:intergenic 40.0%
CTTTCGAAAATATCCATGCG+TGG + chr4_2:54700966-54700985 None:intergenic 40.0%
TACTAACCTCACAACTATCG+AGG - chr4_2:54701149-54701168 Msa0607750:intron 40.0%
AGTTGTCTCATGGTTTAGTG+AGG - chr4_2:54701912-54701931 Msa0607750:intron 40.0%
! TATAGGGCGTTCATCTGATT+AGG + chr4_2:54702014-54702033 None:intergenic 40.0%
CCATGGTACAAGGATCTTAT+AGG + chr4_2:54702031-54702050 None:intergenic 40.0%
CCTATAAGATCCTTGTACCA+TGG - chr4_2:54702028-54702047 Msa0607750:intron 40.0%
CTTGTACCATGGTTTAGTGA+GGG - chr4_2:54702039-54702058 Msa0607750:intron 40.0%
ATATGGGCCACTTGAACAAA+CGG + chr4_2:54702232-54702251 None:intergenic 40.0%
CACAACAATGCAACTGCAAA+AGG + chr4_2:54702533-54702552 None:intergenic 40.0%
!! TTGGGATTTTGAGTCTCTTC+AGG + chr4_2:54702720-54702739 None:intergenic 40.0%
AATGCAAGATCACTTTCAGC+AGG + chr4_2:54702759-54702778 None:intergenic 40.0%
TGCTGAAAGTGATCTTGCAT+TGG - chr4_2:54702758-54702777 Msa0607750:intron 40.0%
!! TTTTGGGAAACTCAACCTGT+TGG - chr4_2:54702834-54702853 Msa0607750:intron 40.0%
TTTGGGAAACTCAACCTGTT+GGG - chr4_2:54702835-54702854 Msa0607750:intron 40.0%
TTGGGCAGTTCAAGGATATA+GGG - chr4_2:54702853-54702872 Msa0607750:intron 40.0%
! CTGTTTTACCTCAGATAAGG+GGG + chr4_2:54702916-54702935 None:intergenic 40.0%
! CCTGTTTTACCTCAGATAAG+GGG + chr4_2:54702917-54702936 None:intergenic 40.0%
TAGAGGTTAGGAAGGTTGTA+TGG + chr4_2:54702942-54702961 None:intergenic 40.0%
ACCTTCCTAACCTCTATGAA+TGG - chr4_2:54702946-54702965 Msa0607750:intron 40.0%
CCTTCCTAACCTCTATGAAT+GGG - chr4_2:54702947-54702966 Msa0607750:intron 40.0%
GTAACCCATTCATAGAGGTT+AGG + chr4_2:54702954-54702973 None:intergenic 40.0%
CACAAGTAACCCATTCATAG+AGG + chr4_2:54702959-54702978 None:intergenic 40.0%
TACTTCACAGCTTGGCATAT+TGG - chr4_2:54703110-54703129 Msa0607750:intron 40.0%
CCGTGATGAGGTTGTTAATA+TGG - chr4_2:54703199-54703218 Msa0607750:intron 40.0%
TCAAAGATCTGTGCCAGTAT+TGG + chr4_2:54703379-54703398 None:intergenic 40.0%
ACGAAAATGATGTGGAGCAT+TGG - chr4_2:54703594-54703613 Msa0607750:intron 40.0%
ACACTTCCTTCTAGTATCCT+TGG - chr4_2:54703701-54703720 Msa0607750:intron 40.0%
!! TTGAGTAATTTGGGTTGCCA+AGG + chr4_2:54703721-54703740 None:intergenic 40.0%
ATTCATCAGCTGAAGCAAAG+GGG + chr4_2:54703786-54703805 None:intergenic 40.0%
CATTCATCAGCTGAAGCAAA+GGG + chr4_2:54703787-54703806 None:intergenic 40.0%
TCATTCATCAGCTGAAGCAA+AGG + chr4_2:54703788-54703807 None:intergenic 40.0%
ATCTCTACAACTACCGAGTA+AGG - chr4_2:54703927-54703946 Msa0607750:intron 40.0%
ACTTCAATGCATGCCTTACT+CGG + chr4_2:54703943-54703962 None:intergenic 40.0%
CATTGAAGTCATCAGAGCTT+GGG - chr4_2:54703954-54703973 Msa0607750:intron 40.0%
TGCATAAGTGGTTGAACTTG+AGG - chr4_2:54704167-54704186 Msa0607750:intron 40.0%
GTTTCCATTTGAAGGAGTGA+AGG + chr4_2:54704336-54704355 None:intergenic 40.0%
GCTTAGCGTGATGCAGAATA+TGG - chr4_2:54698972-54698991 Msa0607750:three_prime_UTR 45.0%
TTGTTACCCTCCAATTTGGG+AGG + chr4_2:54699070-54699089 None:intergenic 45.0%
GGGATGGAATGGAATGGAAT+GGG + chr4_2:54699188-54699207 None:intergenic 45.0%
TGGGATGGAATGGAATGGAA+TGG + chr4_2:54699189-54699208 None:intergenic 45.0%
!!! TAGCTGGCTCGATTTTACCA+CGG - chr4_2:54699501-54699520 Msa0607750:CDS 45.0%
! TTAAGTTGCAATGCCACTGG+TGG - chr4_2:54699704-54699723 Msa0607750:CDS 45.0%
CTTTCGGTTATCATACGTGG+TGG - chr4_2:54699752-54699771 Msa0607750:CDS 45.0%
AGGACTCCCAAACAAGAAAG+TGG + chr4_2:54699784-54699803 None:intergenic 45.0%
CAAGCCGACAACCAAAAAAG+AGG + chr4_2:54699828-54699847 None:intergenic 45.0%
! CATGAAGTGCCAAAAGAACC+AGG + chr4_2:54699885-54699904 None:intergenic 45.0%
GCGTGACTCAAGTTACATAG+GGG + chr4_2:54700843-54700862 None:intergenic 45.0%
! TGGGAGCGAGCAATTTTTGA+TGG - chr4_2:54700992-54701011 Msa0607750:intron 45.0%
! GGGAGCGAGCAATTTTTGAT+GGG - chr4_2:54700993-54701012 Msa0607750:intron 45.0%
GCTTATCACTGCTCTTCTCT+AGG + chr4_2:54701089-54701108 None:intergenic 45.0%
GTCTCTCAATTGTCTTGTGC+GGG + chr4_2:54701111-54701130 None:intergenic 45.0%
CGTCTCTCAATTGTCTTGTG+CGG + chr4_2:54701112-54701131 None:intergenic 45.0%
TTTGTGCCTCGATAGTTGTG+AGG + chr4_2:54701158-54701177 None:intergenic 45.0%
GAGACGTGAAAGTGAGAGAT+AGG + chr4_2:54701192-54701211 None:intergenic 45.0%
CGAGAATCTGACACACTAAG+TGG + chr4_2:54701459-54701478 None:intergenic 45.0%
TTTGTCCAGCGTATGAAGCA+TGG - chr4_2:54701950-54701969 Msa0607750:intron 45.0%
TATGAAGCATGGACACTCCT+CGG - chr4_2:54701961-54701980 Msa0607750:intron 45.0%
GATTAGGTGTGTCATGGTGT+CGG - chr4_2:54701983-54702002 Msa0607750:intron 45.0%
CCTCACTAAACCATGGTACA+AGG + chr4_2:54702041-54702060 None:intergenic 45.0%
CCTTGTACCATGGTTTAGTG+AGG - chr4_2:54702038-54702057 Msa0607750:intron 45.0%
AATGCTAAAAAACGGGGGAC+TGG + chr4_2:54702160-54702179 None:intergenic 45.0%
!! GTTGATAGCAATCCTTCCTC+TGG - chr4_2:54702690-54702709 Msa0607750:intron 45.0%
ACTCAAAATCCCAACCCAGA+TGG - chr4_2:54702726-54702745 Msa0607750:intron 45.0%
ATATCCTTGAACTGCCCAAC+AGG + chr4_2:54702852-54702871 None:intergenic 45.0%
GTTGGGCAGTTCAAGGATAT+AGG - chr4_2:54702852-54702871 Msa0607750:intron 45.0%
ATAGGACCTTCAGGCAAAGT+GGG + chr4_2:54702882-54702901 None:intergenic 45.0%
TTTACCTCAGATAAGGGGGT+TGG + chr4_2:54702912-54702931 None:intergenic 45.0%
! CCCCTTATCTGAGGTAAAAC+AGG - chr4_2:54702914-54702933 Msa0607750:intron 45.0%
CCCATTCATAGAGGTTAGGA+AGG + chr4_2:54702950-54702969 None:intergenic 45.0%
ATTCGAAGGAATTTCTGCGC+TGG - chr4_2:54703069-54703088 Msa0607750:intron 45.0%
TTCGAAGGAATTTCTGCGCT+GGG - chr4_2:54703070-54703089 Msa0607750:intron 45.0%
GGCAGGGATACCTGTTATAA+AGG + chr4_2:54703168-54703187 None:intergenic 45.0%
ACAAGAAGCTTCGAACCAAG+AGG - chr4_2:54703246-54703265 Msa0607750:intron 45.0%
TGCTCCTGTCATGATCAAAG+AGG - chr4_2:54703271-54703290 Msa0607750:intron 45.0%
GTCACCTCTTTGATCATGAC+AGG + chr4_2:54703278-54703297 None:intergenic 45.0%
TGATCAAAGAGGTGACCAGA+AGG - chr4_2:54703282-54703301 Msa0607750:intron 45.0%
GATCAAAGAGGTGACCAGAA+GGG - chr4_2:54703283-54703302 Msa0607750:intron 45.0%
GGGTGCACTTGGAGAATATA+TGG - chr4_2:54703303-54703322 Msa0607750:intron 45.0%
GCACTTGGAGAATATATGGC+AGG - chr4_2:54703307-54703326 Msa0607750:intron 45.0%
AAGAATCACTCCTGCTGTGT+AGG + chr4_2:54703336-54703355 None:intergenic 45.0%
!! CAGTATTGGCAAGTTGCTAC+TGG + chr4_2:54703365-54703384 None:intergenic 45.0%
CAGTAGCAACTTGCCAATAC+TGG - chr4_2:54703363-54703382 Msa0607750:intron 45.0%
CAGAATCAACAGTCACACCA+GGG - chr4_2:54703483-54703502 Msa0607750:intron 45.0%
CACACCAGGGTTTAGAAAGA+TGG - chr4_2:54703496-54703515 Msa0607750:intron 45.0%
GGAAATCCATGATGTTCCTG+CGG - chr4_2:54703517-54703536 Msa0607750:intron 45.0%
TTGTAACCGCAGGAACATCA+TGG + chr4_2:54703526-54703545 None:intergenic 45.0%
ATGATGTTCCTGCGGTTACA+AGG - chr4_2:54703525-54703544 Msa0607750:intron 45.0%
!! CTAATTAGCCTTGTAACCGC+AGG + chr4_2:54703536-54703555 None:intergenic 45.0%
CTGCGGTTACAAGGCTAATT+AGG - chr4_2:54703534-54703553 Msa0607750:intron 45.0%
CTATCGACAACATTCTCCCT+AGG + chr4_2:54703626-54703645 None:intergenic 45.0%
TGAAAGTCCTGAAACTCACG+AGG - chr4_2:54703655-54703674 Msa0607750:intron 45.0%
GCATTGAAGTCATCAGAGCT+TGG - chr4_2:54703953-54703972 Msa0607750:intron 45.0%
TTCCTTCTCAGAGGCAATTC+TGG - chr4_2:54704133-54704152 Msa0607750:intron 45.0%
TTCTCAGAGGCAATTCTGGA+GGG - chr4_2:54704137-54704156 Msa0607750:intron 45.0%
CGATCCTTCACTCCTTCAAA+TGG - chr4_2:54704329-54704348 Msa0607750:intron 45.0%
!! TAGTTAAAAAATAAAATAAA+AGG - chr4_2:54699030-54699049 Msa0607750:three_prime_UTR 5.0%
!! AGTTAAAAAATAAAATAAAA+GGG - chr4_2:54699031-54699050 Msa0607750:three_prime_UTR 5.0%
CCAATTTGGGAGGAATGGGA+TGG + chr4_2:54699060-54699079 None:intergenic 50.0%
CCATCCCATTCCTCCCAAAT+TGG - chr4_2:54699057-54699076 Msa0607750:three_prime_UTR 50.0%
TCCCATTCCTCCCAAATTGG+AGG - chr4_2:54699060-54699079 Msa0607750:three_prime_UTR 50.0%
CCCTCCAATTTGGGAGGAAT+GGG + chr4_2:54699064-54699083 None:intergenic 50.0%
CCCATTCCTCCCAAATTGGA+GGG - chr4_2:54699061-54699080 Msa0607750:three_prime_UTR 50.0%
ACCCTCCAATTTGGGAGGAA+TGG + chr4_2:54699065-54699084 None:intergenic 50.0%
TGGGATGGGATGGAATGGAA+TGG + chr4_2:54699194-54699213 None:intergenic 50.0%
! TGTGATGGGATGGGATGGAA+TGG + chr4_2:54699199-54699218 None:intergenic 50.0%
! TGGAATGTGATGGGATGGGA+TGG + chr4_2:54699204-54699223 None:intergenic 50.0%
TTCAGCCATCTTTGTGTGGG+CGG - chr4_2:54699404-54699423 Msa0607750:CDS 50.0%
TGCTCGCGTCTTTCAGCATA+AGG - chr4_2:54699651-54699670 Msa0607750:CDS 50.0%
TCGCGTCTTTCAGCATAAGG+AGG - chr4_2:54699654-54699673 Msa0607750:CDS 50.0%
GATCTGCTTTCAACCACCAG+TGG + chr4_2:54699720-54699739 None:intergenic 50.0%
!! TTGGTTGTCGGCTTGACCTT+TGG - chr4_2:54699833-54699852 Msa0607750:CDS 50.0%
TACGTGACTTAAGCCACGCA+TGG - chr4_2:54700950-54700969 Msa0607750:intron 50.0%
AGTGTCCATGCTTCATACGC+TGG + chr4_2:54701958-54701977 None:intergenic 50.0%
! TCCTCGGATTAGGTGTGTCA+TGG - chr4_2:54701977-54701996 Msa0607750:intron 50.0%
ACCATGACACACCTAATCCG+AGG + chr4_2:54701981-54702000 None:intergenic 50.0%
TCTCGTCCCTCACTAAACCA+TGG + chr4_2:54702048-54702067 None:intergenic 50.0%
TCCACCACCGTTTGTTCAAG+TGG - chr4_2:54702222-54702241 Msa0607750:intron 50.0%
TCTTCAGGTGATCCAGAGGA+AGG + chr4_2:54702705-54702724 None:intergenic 50.0%
AGTCTCTTCAGGTGATCCAG+AGG + chr4_2:54702709-54702728 None:intergenic 50.0%
GGTGCATTTCCATCTGGGTT+GGG + chr4_2:54702738-54702757 None:intergenic 50.0%
AGGTGCATTTCCATCTGGGT+TGG + chr4_2:54702739-54702758 None:intergenic 50.0%
CAGCAGGTGCATTTCCATCT+GGG + chr4_2:54702743-54702762 None:intergenic 50.0%
TCAGCAGGTGCATTTCCATC+TGG + chr4_2:54702744-54702763 None:intergenic 50.0%
TCAACCTGTTGGGCAGTTCA+AGG - chr4_2:54702845-54702864 Msa0607750:intron 50.0%
TAGGACCTTCAGGCAAAGTG+GGG + chr4_2:54702881-54702900 None:intergenic 50.0%
GATAGGACCTTCAGGCAAAG+TGG + chr4_2:54702883-54702902 None:intergenic 50.0%
CTCATCACGGACTCGAATTC+GGG + chr4_2:54703189-54703208 None:intergenic 50.0%
CCTCATCACGGACTCGAATT+CGG + chr4_2:54703190-54703209 None:intergenic 50.0%
ATTCTCCAAGTGCACCCTTC+TGG + chr4_2:54703300-54703319 None:intergenic 50.0%
TGGCAAGTTGCTACTGGTGT+AGG + chr4_2:54703359-54703378 None:intergenic 50.0%
!! CCTGGTGTGACTGTTGATTC+TGG + chr4_2:54703485-54703504 None:intergenic 50.0%
CCAGAATCAACAGTCACACC+AGG - chr4_2:54703482-54703501 Msa0607750:intron 50.0%
!! TGGAGCATTGGCTTCTTCCT+AGG - chr4_2:54703606-54703625 Msa0607750:intron 50.0%
!! GGAGCATTGGCTTCTTCCTA+GGG - chr4_2:54703607-54703626 Msa0607750:intron 50.0%
TCAGTGACCTCGTGAGTTTC+AGG + chr4_2:54703665-54703684 None:intergenic 50.0%
GGGTTGCCAAGGATACTAGA+AGG + chr4_2:54703710-54703729 None:intergenic 50.0%
! CTCCAGAATTGCCTCTGAGA+AGG + chr4_2:54704138-54704157 None:intergenic 50.0%
CTTCTCAGAGGCAATTCTGG+AGG - chr4_2:54704136-54704155 Msa0607750:intron 50.0%
GAGGGTCAGTGATGCATAAG+TGG - chr4_2:54704155-54704174 Msa0607750:intron 50.0%
GGATCGTCTAATCGAAGTCC+AGG + chr4_2:54704315-54704334 None:intergenic 50.0%
CACAACCGCCCACACAAAGA+TGG + chr4_2:54699412-54699431 None:intergenic 55.0%
CATCTTTGTGTGGGCGGTTG+TGG - chr4_2:54699410-54699429 Msa0607750:CDS 55.0%
AACTCGAGCAGGATGAACCG+TGG + chr4_2:54699521-54699540 None:intergenic 55.0%
TAACAAGACTAGGGGCCGTC+TGG - chr4_2:54701541-54701560 Msa0607750:intron 55.0%
ACCAATCCAAACGGGCCCTA+AGG - chr4_2:54701734-54701753 Msa0607750:intron 55.0%
CCAATCCAAACGGGCCCTAA+GGG - chr4_2:54701735-54701754 Msa0607750:intron 55.0%
GCATGGACACTCCTCGGATT+AGG - chr4_2:54701967-54701986 Msa0607750:intron 55.0%
GCCACTTGAACAAACGGTGG+TGG + chr4_2:54702226-54702245 None:intergenic 55.0%
TGGGCCACTTGAACAAACGG+TGG + chr4_2:54702229-54702248 None:intergenic 55.0%
GGTGGTTCGATAGGACCTTC+AGG + chr4_2:54702891-54702910 None:intergenic 55.0%
!! AAGGGGGTTGGTGGTTCGAT+AGG + chr4_2:54702900-54702919 None:intergenic 55.0%
ACCACCAACCCCCTTATCTG+AGG - chr4_2:54702905-54702924 Msa0607750:intron 55.0%
ACCTCAGATAAGGGGGTTGG+TGG + chr4_2:54702909-54702928 None:intergenic 55.0%
TGCCAAGCTGTGAAGTAGCC+CGG + chr4_2:54703107-54703126 None:intergenic 55.0%
CCGAATTCGAGTCCGTGATG+AGG - chr4_2:54703187-54703206 Msa0607750:intron 55.0%
CATGACAGGAGCAAGCCTCT+TGG + chr4_2:54703264-54703283 None:intergenic 55.0%
!! GATGTCGGTTTCTCTCGGCT+CGG - chr4_2:54703416-54703435 Msa0607750:intron 55.0%
CCCTTAGGGCCCGTTTGGAT+TGG + chr4_2:54701738-54701757 None:intergenic 60.0%
ATCCAAACGGGCCCTAAGGG+TGG - chr4_2:54701738-54701757 Msa0607750:intron 60.0%
TCCAAACGGGCCCTAAGGGT+GGG - chr4_2:54701739-54701758 Msa0607750:intron 60.0%
ACGCACCCAACCCACCCTTA+GGG + chr4_2:54701752-54701771 None:intergenic 60.0%
AACGCACCCAACCCACCCTT+AGG + chr4_2:54701753-54701772 None:intergenic 60.0%
GGGAACCCCACTTTGCCTGA+AGG - chr4_2:54702873-54702892 Msa0607750:intron 60.0%
GAAGTAGCCCGGAGGTTGCA+GGG + chr4_2:54703096-54703115 None:intergenic 60.0%
TGAAGTAGCCCGGAGGTTGC+AGG + chr4_2:54703097-54703116 None:intergenic 60.0%
CAAGCTGTGAAGTAGCCCGG+AGG + chr4_2:54703104-54703123 None:intergenic 60.0%
CTCCGGGCTACTTCACAGCT+TGG - chr4_2:54703102-54703121 Msa0607750:intron 60.0%
CACGGACTCGAATTCGGGCA+GGG + chr4_2:54703184-54703203 None:intergenic 60.0%
TCACGGACTCGAATTCGGGC+AGG + chr4_2:54703185-54703204 None:intergenic 60.0%
! GGTGACCAGAAGGGTGCACT+TGG - chr4_2:54703292-54703311 Msa0607750:intron 60.0%
!! GTTTCTCTCGGCTCGGTGCT+CGG - chr4_2:54703423-54703442 Msa0607750:intron 60.0%
ACCCACCCTTAGGGCCCGTT+TGG + chr4_2:54701743-54701762 None:intergenic 65.0%
AACGGGCCCTAAGGGTGGGT+TGG - chr4_2:54701743-54701762 Msa0607750:intron 65.0%
! ACGGGCCCTAAGGGTGGGTT+GGG - chr4_2:54701744-54701763 Msa0607750:intron 65.0%
TGGCAGGCTGCCTACACAGC+AGG - chr4_2:54703323-54703342 Msa0607750:intron 65.0%
GCGCTGGGCCCTGCAACCTC+CGG - chr4_2:54703085-54703104 Msa0607750:intron 75.0%
CGCTGGGCCCTGCAACCTCC+GGG - chr4_2:54703086-54703105 Msa0607750:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54698893 54704442 54698893 ID=Msa0607750;Name=Msa0607750
chr4_2 mRNA 54698893 54704442 54698893 ID=Msa0607750-mRNA-1;Parent=Msa0607750;Name=Msa0607750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.66|0.66|0.5|0.33|3|320|440
chr4_2 exon 54698893 54699191 54698893 ID=Msa0607750-mRNA-1:exon:13800;Parent=Msa0607750-mRNA-1
chr4_2 exon 54699323 54700660 54699323 ID=Msa0607750-mRNA-1:exon:13799;Parent=Msa0607750-mRNA-1
chr4_2 exon 54704437 54704442 54704437 ID=Msa0607750-mRNA-1:exon:13798;Parent=Msa0607750-mRNA-1
chr4_2 CDS 54704437 54704442 54704437 ID=Msa0607750-mRNA-1:cds;Parent=Msa0607750-mRNA-1
chr4_2 CDS 54699344 54700660 54699344 ID=Msa0607750-mRNA-1:cds;Parent=Msa0607750-mRNA-1
chr4_2 three_prime_UTR 54699323 54699343 54699323 ID=Msa0607750-mRNA-1:three_prime_utr;Parent=Msa0607750-mRNA-1
chr4_2 three_prime_UTR 54698893 54699191 54698893 ID=Msa0607750-mRNA-1:three_prime_utr;Parent=Msa0607750-mRNA-1
Gene Sequence

>Msa0607750

ATGAAAAAAGCATTTAAAATGGTTGATAGCAATCCTTCCTCTGGATCACCTGAAGAGACTCAAAATCCCAACCCAGATGGAAATGCACCTGCTGAAAGTGATCTTGCATTGGATAATCTAGCACAAAAAGTTCAAGAATCTCTATCTATCGACCAAAGACATAAATTTTGGGAAACTCAACCTGTTGGGCAGTTCAAGGATATAGGGAACCCCACTTTGCCTGAAGGTCCTATCGAACCACCAACCCCCTTATCTGAGGTAAAACAGGAACCATACAACCTTCCTAACCTCTATGAATGGGTTACTTGTGACATTCATGACGAGCAGATGTGTGATGAGATATATACCCTTCTTGCTAATAATTATGTTGAAGATGATGAGAACATGTTTAGGTTTAACTATTCGAAGGAATTTCTGCGCTGGGCCCTGCAACCTCCGGGCTACTTCACAGCTTGGCATATTGGTGTTCGTGTTAAAACTTCCAAGAAGATGGTTGCCTTTATAACAGGTATCCCTGCCCGAATTCGAGTCCGTGATGAGGTTGTTAATATGGCAGAAATTAACTTTTTGTGTGTTCACAAGAAGCTTCGAACCAAGAGGCTTGCTCCTGTCATGATCAAAGAGGTGACCAGAAGGGTGCACTTGGAGAATATATGGCAGGCTGCCTACACAGCAGGAGTGATTCTTCCTACACCAGTAGCAACTTGCCAATACTGGCACAGATCTTTGAATCCCAAGAAACTAATTGATGTCGGTTTCTCTCGGCTCGGTGCTCGGATGACAATGAGTAGAACTATCAAACTTTACAAGCTACCAGAATCAACAGTCACACCAGGGTTTAGAAAGATGGAAATCCATGATGTTCCTGCGGTTACAAGGCTAATTAGGAATTATTTGAGTCAATTTATTGTTGCGCCTGATTTTGACGAAAATGATGTGGAGCATTGGCTTCTTCCTAGGGAGAATGTTGTCGATAGTTATCTGGTTGAAAGTCCTGAAACTCACGAGGTCACTGACTTTTGTAGTTTTTACACACTTCCTTCTAGTATCCTTGGCAACCCAAATTACTCAACTTTGAAAGCAGCATACTCATTTTACAATGTTTCAACAGCTACCCCTTTGCTTCAGCTGATGAATGATGCTCTCATTGTAGCGAAACAGAAAGATTATGATGTTTTCAACGCTTTGGACGTCATGCAAAATGAAAGCTTCTTGAAGGAACTGAAGTTTGGACCAGGTGATGGTAAACTTCATTATTATCTCTACAACTACCGAGTAAGGCATGCATTGAAGTCATCAGAGCTTGGGCTTGTGCTTCTGTAG
Protein sequence

>Msa0607750

MKKAFKMVDSNPSSGSPEETQNPNPDGNAPAESDLALDNLAQKVQESLSIDQRHKFWETQPVGQFKDIGNPTLPEGPIEPPTPLSEVKQEPYNLPNLYEWVTCDIHDEQMCDEIYTLLANNYVEDDENMFRFNYSKEFLRWALQPPGYFTAWHIGVRVKTSKKMVAFITGIPARIRVRDEVVNMAEINFLCVHKKLRTKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPVATCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPESTVTPGFRKMEIHDVPAVTRLIRNYLSQFIVAPDFDENDVEHWLLPRENVVDSYLVESPETHEVTDFCSFYTLPSSILGNPNYSTLKAAYSFYNVSTATPLLQLMNDALIVAKQKDYDVFNALDVMQNESFLKELKFGPGDGKLHYYLYNYRVRHALKSSELGLVLL*