AlfalfaGEDB | Msa0962190

M. sativa cultivar zhongmu-4 / Msa0962190

KEGG: K01899
GO: GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564
PFAM: PF02629.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0962190	XP_003620150.1	88.920	361	2	1	1	361	1	323	0.0	632

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0962190	sp\|Q8LAD2\|SUCA2_ARATH	76.880	359	40	3	5	361	24	341	0.0	539

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0042980	Msa0962190	0.818927	1.518437e-52	-8.615850e-47
Msa0054730	Msa0962190	0.881892	1.644825e-70	-8.615850e-47
Msa0078140	Msa0962190	0.801419	9.085422e-49	-8.615850e-47
Msa0090770	Msa0962190	0.801566	8.475120e-49	-8.615850e-47
Msa0094940	Msa0962190	0.842460	2.551997e-58	-8.615850e-47
Msa0106370	Msa0962190	0.861094	1.305508e-63	-8.615850e-47
Msa0128320	Msa0962190	0.811108	8.256141e-51	-8.615850e-47
Msa0136890	Msa0962190	0.825291	5.079381e-54	-8.615850e-47
Msa0153000	Msa0962190	0.806302	8.787911e-50	-8.615850e-47
Msa0178350	Msa0962190	-0.808633	2.814622e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0962190	MtrunA17_Chr6g0481761	88.920	361	2	1	1	361	1	323	0.0	632
Msa0962190	MtrunA17_Chr2g0294381	27.778	252	132	4	116	356	104	316	3.65e-16	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0962190	AT5G23250.1	76.880	359	40	3	5	361	24	341	0.0	539
Msa0962190	AT5G08300.1	77.391	345	38	2	19	361	40	346	0.0	533
Msa0962190	AT5G23250.2	76.997	313	29	3	5	315	24	295	1.14e-166	467
Msa0962190	AT5G23250.3	86.026	229	27	2	5	231	24	249	1.75e-140	399
Msa0962190	AT3G06650.1	26.984	252	134	4	116	356	104	316	1.41e-15	78.6
Msa0962190	AT3G06650.2	26.984	252	134	4	116	356	104	316	1.41e-15	78.6
Msa0962190	AT5G49460.2	27.381	252	133	4	116	356	104	316	4.08e-15	77.0
Msa0962190	AT5G49460.1	27.381	252	133	4	116	356	104	316	4.08e-15	77.0

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Find 131 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTGTCTTGTGGGGA+AGG	0.508177	6_3:+85092948	Msa0962190:intron
AAAGAATAGTCAGTCCAGAA+AGG	0.575032	6_3:+85089767	Msa0962190:five_prime_UTR
AAAGATGTACCTTCTGTTTG+AGG	0.393263	6_3:-85092599	None:intergenic
AAAGGCGGAACGGAACATTT+AGG	0.302614	6_3:+85090090	Msa0962190:CDS
AAAGGTCCCAACTTTAGTTC+TGG	0.269047	6_3:+85093151	Msa0962190:CDS
AAAGTTTGTCTTGTGGGGAA+GGG	0.520481	6_3:+85092949	Msa0962190:intron
AAATATCCCATTACTATCAA+TGG	0.358936	6_3:-85094332	None:intergenic
AACAAAGTTTGTTCCATTGA+AGG	0.409176	6_3:-85092549	None:intergenic
AACGGAACATTTAGGGCTTC+CGG	0.344291	6_3:+85090098	Msa0962190:CDS
AACTTTAGTTCTGGGTTTGC+TGG	0.277028	6_3:+85093160	Msa0962190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTATAGGTTAATATGTGT+TGG	+	chr6_3:85090528-85090547	Msa0962190:intron	30.0%
TCTCAAATTATTAACGGTGT+TGG	-	chr6_3:85090586-85090605	None:intergenic	30.0%
TGATTGATCTGGTAAAAGAT+AGG	+	chr6_3:85090699-85090718	Msa0962190:intron	30.0%
GATTGATCTGGTAAAAGATA+GGG	+	chr6_3:85090700-85090719	Msa0962190:intron	30.0%
TGTAAGGTCTAGTTAAAGAA+AGG	+	chr6_3:85090882-85090901	Msa0962190:intron	30.0%
GTAAGGTCTAGTTAAAGAAA+GGG	+	chr6_3:85090883-85090902	Msa0962190:intron	30.0%
TCTAGTTAAAGAAAGGGTTT+GGG	+	chr6_3:85090889-85090908	Msa0962190:intron	30.0%
TGTAAGGTCTAGTTAAAGAA+AGG	+	chr6_3:85090882-85090901	Msa0962190:intron	30.0%
GTAAGGTCTAGTTAAAGAAA+GGG	+	chr6_3:85090883-85090902	Msa0962190:intron	30.0%
TCTAGTTAAAGAAAGGGTTT+GGG	+	chr6_3:85090889-85090908	Msa0962190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	85089763	85094633	85089763	ID=Msa0962190;Name=Msa0962190
chr6_3	mRNA	85089763	85094633	85089763	ID=Msa0962190-mRNA-1;Parent=Msa0962190;Name=Msa0962190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=123\|0.57\|0.75\|0.75\|1\|1\|8\|376\|361
chr6_3	exon	85089763	85090278	85089763	ID=Msa0962190-mRNA-1:exon:15291;Parent=Msa0962190-mRNA-1
chr6_3	exon	85091821	85091991	85091821	ID=Msa0962190-mRNA-1:exon:15292;Parent=Msa0962190-mRNA-1
chr6_3	exon	85092488	85092611	85092488	ID=Msa0962190-mRNA-1:exon:15293;Parent=Msa0962190-mRNA-1
chr6_3	exon	85092784	85092845	85092784	ID=Msa0962190-mRNA-1:exon:15294;Parent=Msa0962190-mRNA-1
chr6_3	exon	85092953	85092999	85092953	ID=Msa0962190-mRNA-1:exon:15295;Parent=Msa0962190-mRNA-1
chr6_3	exon	85093141	85093207	85093141	ID=Msa0962190-mRNA-1:exon:15296;Parent=Msa0962190-mRNA-1
chr6_3	exon	85093447	85093528	85093447	ID=Msa0962190-mRNA-1:exon:15297;Parent=Msa0962190-mRNA-1
chr6_3	exon	85094118	85094633	85094118	ID=Msa0962190-mRNA-1:exon:15298;Parent=Msa0962190-mRNA-1
chr6_3	five_prime_UTR	85089763	85089885	85089763	ID=Msa0962190-mRNA-1:five_prime_utr;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85089886	85090278	85089886	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85091821	85091991	85091821	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85092488	85092611	85092488	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85092784	85092845	85092784	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85092953	85092999	85092953	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85093141	85093207	85093141	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85093447	85093528	85093447	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	CDS	85094118	85094257	85094118	ID=Msa0962190-mRNA-1:cds;Parent=Msa0962190-mRNA-1
chr6_3	three_prime_UTR	85094258	85094633	85094258	ID=Msa0962190-mRNA-1:three_prime_utr;Parent=Msa0962190-mRNA-1

Gene Sequence

>Msa0962190

ATGACTTTCCACCGCGTAACAAAACTCTTCTCATCAATCGCCTCCAACAACCGCCGCAACTTCTCAACAACCCCTTCCCCCGCGGTGTTCGTCGACAAAAGCACACGCGTGATCTGTCAAGGAATAACCGGCAAAAACGGAACGTTTCACACCGAACAAGCGATCGAATATGGAACGAATATGGTTGGCGGTGTTACTCCGAAGAAAGGCGGAACGGAACATTTAGGGCTTCCGGTTTTCAATTCTGTTGCGGAAGCGAAAACTGAAACGAAAGCGAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCTATTATGGAAGCGGTTGAAGCGGAGTTGGATCTTGTTGTTTGTATTACTGAAGGGATTCCTCAGCATGATATGGTACGAGTTAAAGCAGCACTTAACAGACAATCCAAAACTCGTTTGATAGGACCAAACTGCCCTGGTATCATCAAGCCCGGGGAATGTAAAATTGGAATCATGCCGGGTTACATTCACAAACCTGGGCGCATTGGAATTGTTTCTCGTTCTGGAACTTTGACATATGAAGCGGTTTACCAAACAACTGCTGTTGGCCTTGGACAATCCACATGTGTGGGCATTGGAGGAGACCCCTTCAATGGAACAAACTTTGTTGATTGCCTTACAAAGTTCCTAGCAGATCCTCAAACAGAAGGTATTATTCTTATTGGAGAGATAGGAGGAACTGCAGAAGAGGACGCTGCTGCTCTAATTAAGTTTGTCTTGTGGGGAAGGGATATCCCTGAAGTTGTCTTACATGGAAGTGTGCCTGTTAAAGGTCCCAACTTTAGTTCTGGGTTTGCTGGTAGTGGGGTTATGGACATGCAAAAGGAAAGCGGGACTGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGACACGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCTCAAGACAAAATCAGCACCCTTAGGGAAGCTGGAGTCACAGTTGTGGAGTCCCCAGCTAAAATTGGAGCTGCCATGTTTGATATTTTCAAGCAGAAAGGCTTAGTGCAATAG

Protein sequence

>Msa0962190

MTFHRVTKLFSSIASNNRRNFSTTPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKTETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVYQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIILIGEIGGTAEEDAAALIKFVLWGRDIPEVVLHGSVPVKGPNFSSGFAGSGVMDMQKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ*