AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553980 MtrunA17_Chr2g0312891 96.471 170 5 1 1 170 1 169 2.50e-119 334
Msa0553980 MtrunA17_Chr4g0039861 97.458 118 3 0 1 118 1 118 3.47e-82 238
Msa0553980 MtrunA17_Chr4g0039871 98.113 53 1 0 118 170 27 79 4.72e-32 110
Msa0553980 MtrunA17_Chr5g0445201 46.269 67 36 0 97 163 77 143 2.82e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553980 AT3G10110.1 68.452 168 52 1 2 169 6 172 1.83e-71 213
Msa0553980 AT3G10110.4 66.901 142 46 1 2 143 6 146 1.05e-53 167
Msa0553980 AT3G10110.3 67.521 117 37 1 2 118 6 121 1.43e-40 134
Msa0553980 AT3G10110.2 67.521 117 37 1 2 118 6 121 1.43e-40 134
Msa0553980 AT5G55510.1 45.070 71 39 0 98 168 87 157 8.49e-12 61.6
Msa0553980 AT4G26670.1 45.070 71 39 0 98 168 87 157 9.12e-12 61.2

Find 88 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACAGTGGGCAAACTTA+TGG 0.181883 4_1:-51267498 None:intergenic
CACAACCCTTTCTTGTGCTT+GGG 0.225024 4_1:-51265631 None:intergenic
TCTTGTGCTTGGGGTTTAGA+TGG 0.255497 4_1:-51265621 None:intergenic
AAGATTTATGGAGTATTTCT+AGG 0.263070 4_1:+51271531 Msa0553980:three_prime_UTR
AGCCAAAGCATTTGCTGTTA+TGG 0.268629 4_1:+51269102 Msa0553980:CDS
GCCAAAGCATTTGCTGTTAT+GGG 0.277781 4_1:+51269103 Msa0553980:CDS
CAACCAGCCTTGCGTATCTT+AGG 0.284480 4_1:+51267385 Msa0553980:five_prime_UTR
GTCATTTGATCTTGCATCAT+AGG 0.288738 4_1:-51269022 None:intergenic
AAAATAATTCAAAACTAAAA+AGG 0.289895 4_1:-51265578 None:intergenic
TGTCGTCATAGAGAAGTTTC+TGG 0.329705 4_1:+51271173 Msa0553980:CDS
ATCGCCATGGGATTGTTTCT+TGG 0.335372 4_1:+51268986 Msa0553980:CDS
GTGATGACATGGTTTAATAT+TGG 0.335677 4_1:+51271392 Msa0553980:three_prime_UTR
CATCACAATTATTGCTCCTA+TGG 0.349749 4_1:-51271436 None:intergenic
GCACAACCCTTTCTTGTGCT+TGG 0.361116 4_1:-51265632 None:intergenic
AAATTCGCGGCCAAGACATT+TGG 0.363811 4_1:+51267522 Msa0553980:CDS
ATTGTAAGATGAAGATGAAC+AGG 0.373958 4_1:-51266335 None:intergenic
GGTGAGTGGTGACTCCCTTC+TGG 0.377215 4_1:+51265757 Msa0553980:five_prime_UTR
TCAACAGTGGGCAAACTTAT+GGG 0.406352 4_1:-51267497 None:intergenic
TGGTCCACAAGCTGCATGTA+TGG 0.406432 4_1:+51271125 Msa0553980:CDS
ATCACAAATACGTTTGTTGC+TGG 0.417420 4_1:+51269267 Msa0553980:CDS
CGCAATTGTTCCAAATGTCT+TGG 0.417847 4_1:-51267532 None:intergenic
ATACGATAGAGGGACGTGAT+AGG 0.420136 4_1:+51271277 Msa0553980:three_prime_UTR
TTATTTGTATACGATGTCAT+TGG 0.422822 4_1:+51271338 Msa0553980:three_prime_UTR
TGAATTTCAGGAGGTGGTCT+TGG 0.422853 4_1:+51268962 Msa0553980:intron
AAACTTATGGGCTGAATTTG+AGG 0.426075 4_1:-51267485 None:intergenic
ATGAACAGGGGCGGAGGAGA+AGG 0.427837 4_1:-51266321 None:intergenic
CTCTCCACCGTCCTCCTCTC+CGG 0.429599 4_1:+51265733 Msa0553980:five_prime_UTR
CGGATGCATCTTCCGAACTT+AGG 0.430981 4_1:+51271361 Msa0553980:three_prime_UTR
TCACAGAGCTTTCCTAAGTT+CGG 0.438434 4_1:-51271373 None:intergenic
ATAACAACAACAAATATAAC+AGG 0.441644 4_1:-51265659 None:intergenic
GGGATTGTTTCTTGGAGCAC+TGG 0.445943 4_1:+51268994 Msa0553980:CDS
ACCCATAACAGCAAATGCTT+TGG 0.456941 4_1:-51269104 None:intergenic
TTTGTTGCTGGATGTACTAC+TGG 0.469575 4_1:+51269279 Msa0553980:CDS
GTTTCTGGAGAGGCATCAAT+AGG 0.471586 4_1:+51271188 Msa0553980:CDS
CTAAACCCCAAGCACAAGAA+AGG 0.471626 4_1:+51265625 Msa0553980:five_prime_UTR
TCATTTGATCTTGCATCATA+GGG 0.475108 4_1:-51269021 None:intergenic
TGCTGAGTGTGTTGTTGAGA+AGG 0.481367 4_1:+51269141 Msa0553980:CDS
AGCAGATGGGGCGAAGGAGT+TGG 0.482779 4_1:+51269074 Msa0553980:CDS
CATCAATAGGTGAATTGACT+TGG 0.482794 4_1:+51271201 Msa0553980:exon
CATATCATATCTCTTTGAAA+AGG 0.485911 4_1:-51271578 None:intergenic
GGAGCTGCTATATCAGCAAA+AGG 0.495347 4_1:+51269300 Msa0553980:CDS
GAGGGACGTGATAGGGTGTA+AGG 0.500327 4_1:+51271285 Msa0553980:three_prime_UTR
GCTGTGCGCAGTGTTGTTAG+TGG 0.504131 4_1:+51267554 Msa0553980:CDS
ACAACCCTTTCTTGTGCTTG+GGG 0.513733 4_1:-51265630 None:intergenic
TATCACGTCCCTCTATCGTA+TGG 0.515830 4_1:-51271275 None:intergenic
CCCACTGTTGAGGAAATTCG+CGG 0.517714 4_1:+51267509 Msa0553980:CDS
TCCTCCTCTCCGGTGGTGAG+TGG 0.520469 4_1:+51265743 Msa0553980:five_prime_UTR
CAGTGTTGTTAGTGGAGTCA+TGG 0.521834 4_1:+51267562 Msa0553980:CDS
TTAGGTTTGTGCTTCAACAA+TGG 0.522892 4_1:+51267403 Msa0553980:exon
TACGATAGAGGGACGTGATA+GGG 0.523203 4_1:+51271278 Msa0553980:three_prime_UTR
CATAAGTTTGCCCACTGTTG+AGG 0.523867 4_1:+51267499 Msa0553980:CDS
AGGTGGTCTTGGCATCGCCA+TGG 0.525130 4_1:+51268973 Msa0553980:CDS
GGTGGTCTTGGCATCGCCAT+GGG 0.525174 4_1:+51268974 Msa0553980:CDS
TATATTTCAAGCAAAGCAGA+TGG 0.533483 4_1:+51269060 Msa0553980:CDS
TTTGTATACGATGTCATTGG+CGG 0.534029 4_1:+51271341 Msa0553980:three_prime_UTR
ATGAAGATGAACAGGGGCGG+AGG 0.534761 4_1:-51266327 None:intergenic
AACAGGGGCGGAGGAGAAGG+CGG 0.538062 4_1:-51266318 None:intergenic
GCTGCATGTATGGGATGTGC+TGG 0.545754 4_1:+51271135 Msa0553980:CDS
TAAACCCCAAGCACAAGAAA+GGG 0.556283 4_1:+51265626 Msa0553980:five_prime_UTR
ACCACTCACCACCGGAGAGG+AGG 0.563407 4_1:-51265744 None:intergenic
CCGCGAATTTCCTCAACAGT+GGG 0.567028 4_1:-51267509 None:intergenic
ATATTTCAAGCAAAGCAGAT+GGG 0.571540 4_1:+51269061 Msa0553980:CDS
AAACCTAAGATACGCAAGGC+TGG 0.571606 4_1:-51267388 None:intergenic
AAGCAAAGCAGATGGGGCGA+AGG 0.583012 4_1:+51269068 Msa0553980:CDS
TCTCTTTGAAAAGGAAAACA+AGG 0.583579 4_1:-51271569 None:intergenic
AGTGTTGTTAGTGGAGTCAT+GGG 0.583699 4_1:+51267563 Msa0553980:CDS
ATCACGTCCCTCTATCGTAT+GGG 0.584693 4_1:-51271274 None:intergenic
ATGATGCAAGATCAAATGAC+TGG 0.585983 4_1:+51269025 Msa0553980:CDS
TCCACCGTCCTCCTCTCCGG+TGG 0.587465 4_1:+51265736 Msa0553980:five_prime_UTR
CATCCCATACATGCAGCTTG+TGG 0.593009 4_1:-51271129 None:intergenic
TATTTCAAGCAAAGCAGATG+GGG 0.603343 4_1:+51269062 Msa0553980:CDS
AGAGTTACTACTAACCAGAA+GGG 0.604147 4_1:-51265771 None:intergenic
TTTGAAAAGGAAAACAAGGG+TGG 0.607278 4_1:-51271565 None:intergenic
AGGAAAGCTCTGTGATGACA+TGG 0.611207 4_1:+51271381 Msa0553980:three_prime_UTR
AGGGAGTCACCACTCACCAC+CGG 0.611558 4_1:-51265752 None:intergenic
CTCTATGACGACAGAGAATG+CGG 0.617557 4_1:-51271163 None:intergenic
CTCACCACCGGAGAGGAGGA+CGG 0.618826 4_1:-51265740 None:intergenic
GCCGCGAATTTCCTCAACAG+TGG 0.623840 4_1:-51267510 None:intergenic
GGTCCACAAGCTGCATGTAT+GGG 0.631485 4_1:+51271126 Msa0553980:CDS
TGCTCCAAGAAACAATCCCA+TGG 0.644657 4_1:-51268990 None:intergenic
TTGTAAGATGAAGATGAACA+GGG 0.655307 4_1:-51266334 None:intergenic
TCATAGAGAAGTTTCTGGAG+AGG 0.660052 4_1:+51271178 Msa0553980:CDS
GTCACCACTCACCACCGGAG+AGG 0.660867 4_1:-51265747 None:intergenic
ACCACCGGAGAGGAGGACGG+TGG 0.663796 4_1:-51265737 None:intergenic
GCACAAACCTAAGATACGCA+AGG 0.666362 4_1:-51267392 None:intergenic
CTCTTTGAAAAGGAAAACAA+GGG 0.679424 4_1:-51271568 None:intergenic
AAGATGAAGATGAACAGGGG+CGG 0.741265 4_1:-51266330 None:intergenic
TGTAAGATGAAGATGAACAG+GGG 0.755374 4_1:-51266333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTCAAAACTAAAA+AGG - chr4_1:51265581-51265600 None:intergenic 10.0%
!!! AGTAAATATTTTTTTTGAAA+CGG + chr4_1:51266221-51266240 Msa0553980:intron 10.0%
!! TTTAAATACAATTTATTAAG+TGG - chr4_1:51267658-51267677 None:intergenic 10.0%
!! AATTATATGTTACAATTATT+TGG - chr4_1:51270056-51270075 None:intergenic 10.0%
!! TTTATTTGATGAAATTTATG+TGG + chr4_1:51265981-51266000 Msa0553980:intron 15.0%
!! TTATTTGATGAAATTTATGT+GGG + chr4_1:51265982-51266001 Msa0553980:intron 15.0%
!!! TTTTTTTGACAGATTAATTT+AGG + chr4_1:51266175-51266194 Msa0553980:intron 15.0%
!!! TTTTTTGACAGATTAATTTA+GGG + chr4_1:51266176-51266195 Msa0553980:intron 15.0%
!!! GTAAATATTTTTTTTGAAAC+GGG + chr4_1:51266222-51266241 Msa0553980:intron 15.0%
!!! ATTATTTTGTTTGTGAAATT+AGG + chr4_1:51266520-51266539 Msa0553980:intron 15.0%
!! ATTATTATTAACACTTCATT+AGG - chr4_1:51267321-51267340 None:intergenic 15.0%
!!! TCCAAATATTTGTATAATTT+TGG + chr4_1:51267696-51267715 Msa0553980:intron 15.0%
!! ACCAAAATTATACAAATATT+TGG - chr4_1:51267700-51267719 None:intergenic 15.0%
!! TTAGACTGAATAATATTTAT+AGG + chr4_1:51270157-51270176 Msa0553980:intron 15.0%
!! AATATTTATAGGATTATCTT+AGG + chr4_1:51270168-51270187 Msa0553980:intron 15.0%
!! AAAAATAAGAATGAATTACA+AGG - chr4_1:51271509-51271528 None:intergenic 15.0%
!!! TTGTAATTCATTCTTATTTT+TGG + chr4_1:51271508-51271527 Msa0553980:three_prime_UTR 15.0%
!! ATAACAACAACAAATATAAC+AGG - chr4_1:51265662-51265681 None:intergenic 20.0%
!!! TAATTACATTTTCATGTCAT+AGG - chr4_1:51265879-51265898 None:intergenic 20.0%
!!! TTAGTTGATATTCATACTTT+AGG + chr4_1:51266133-51266152 Msa0553980:intron 20.0%
!!! TAGTTGATATTCATACTTTA+GGG + chr4_1:51266134-51266153 Msa0553980:intron 20.0%
!! AAGCTTGAAAAATCAAATTT+GGG - chr4_1:51266397-51266416 None:intergenic 20.0%
!! AAAGCTTGAAAAATCAAATT+TGG - chr4_1:51266398-51266417 None:intergenic 20.0%
!! TTACTATACTATCATATGTT+AGG - chr4_1:51266749-51266768 None:intergenic 20.0%
!! ACATATGATAGTATAGTAAA+TGG + chr4_1:51266750-51266769 Msa0553980:intron 20.0%
!! TTTAAATGATATACAACAGA+CGG - chr4_1:51266960-51266979 None:intergenic 20.0%
!! GTATATCATTTAAACATGTT+AGG + chr4_1:51266966-51266985 Msa0553980:intron 20.0%
!! AAAACAATAGATAGAGAAAA+AGG + chr4_1:51268583-51268602 Msa0553980:intron 20.0%
!!! AGATACTTATATAACTTTTG+GGG - chr4_1:51268763-51268782 None:intergenic 20.0%
!!! GAGATACTTATATAACTTTT+GGG - chr4_1:51268764-51268783 None:intergenic 20.0%
!!! TGAGATACTTATATAACTTT+TGG - chr4_1:51268765-51268784 None:intergenic 20.0%
!!! ATTTTACGAAATAAATCGAA+TGG + chr4_1:51268792-51268811 Msa0553980:intron 20.0%
!! TTGTAAAATGATTGTTTGTT+CGG + chr4_1:51268929-51268948 Msa0553980:intron 20.0%
!!! AGCTAAAAATTTAGTTTCAA+TGG - chr4_1:51269538-51269557 None:intergenic 20.0%
!! TCTCATTTATAAGAAAAATC+TGG - chr4_1:51269685-51269704 None:intergenic 20.0%
!!! ATAGAAAACAACTTTGAAAA+GGG - chr4_1:51270725-51270744 None:intergenic 20.0%
!!! AATAGAAAACAACTTTGAAA+AGG - chr4_1:51270726-51270745 None:intergenic 20.0%
!!! TCTTATTTTTGGAAGATTTA+TGG + chr4_1:51271519-51271538 Msa0553980:three_prime_UTR 20.0%
!! ATTTTCATGTCATAGGTTTT+AGG - chr4_1:51265872-51265891 None:intergenic 25.0%
!!! TTGCTTTTAACGTTTATGTT+AGG + chr4_1:51266104-51266123 Msa0553980:intron 25.0%
!! TGCTTTTAACGTTTATGTTA+GGG + chr4_1:51266105-51266124 Msa0553980:intron 25.0%
!! ATACTTTAGGGACTTAATTT+AGG + chr4_1:51266146-51266165 Msa0553980:intron 25.0%
!! TACTTTAGGGACTTAATTTA+GGG + chr4_1:51266147-51266166 Msa0553980:intron 25.0%
! TGGGTAAAAATAGAGAAAAT+GGG - chr4_1:51266378-51266397 None:intergenic 25.0%
! TTGGGTAAAAATAGAGAAAA+TGG - chr4_1:51266379-51266398 None:intergenic 25.0%
! AAAAAGTTTCATATCCCATA+AGG + chr4_1:51266424-51266443 Msa0553980:intron 25.0%
! TTATAATGACAACACCTTAT+GGG - chr4_1:51266441-51266460 None:intergenic 25.0%
! TAGTACAATAAGTGACAAAA+TGG + chr4_1:51266643-51266662 Msa0553980:intron 25.0%
! TTTACAAAACTTATGTCAGT+AGG + chr4_1:51266779-51266798 Msa0553980:intron 25.0%
! AGAAAAAAAAGGCAATAATC+TGG - chr4_1:51266842-51266861 None:intergenic 25.0%
! GTGTTTCGTTAAGAAAAAAA+AGG - chr4_1:51266853-51266872 None:intergenic 25.0%
! AGTAGCAAATAAATGTTGTA+AGG - chr4_1:51267059-51267078 None:intergenic 25.0%
!! ATGAGTCAAATCAAATTTTC+CGG - chr4_1:51267266-51267285 None:intergenic 25.0%
! ATAAGATGCTAACAGATATT+TGG - chr4_1:51267631-51267650 None:intergenic 25.0%
!! ATTATACAAATATTTGGAGC+AGG - chr4_1:51267694-51267713 None:intergenic 25.0%
!!! TCGGTTTGTAGTAAAATTTT+GGG + chr4_1:51267859-51267878 Msa0553980:intron 25.0%
!!! TTTGTAGTAAAATTTTGGGT+TGG + chr4_1:51267863-51267882 Msa0553980:intron 25.0%
! TCTAAATACACAGACAAATT+TGG - chr4_1:51267899-51267918 None:intergenic 25.0%
! TGTCTGTGTATTTAGATTAT+TGG + chr4_1:51267903-51267922 Msa0553980:intron 25.0%
! TTTGGAAATGGATAAATGAT+AGG + chr4_1:51267995-51268014 Msa0553980:intron 25.0%
!! TTCTTTTTCTCTCTTCTTAT+TGG + chr4_1:51268557-51268576 Msa0553980:intron 25.0%
! TGTACAAATATCATTTCACT+TGG + chr4_1:51268671-51268690 Msa0553980:intron 25.0%
!!! TCCTTTTTTCTTTTCTTTTC+AGG + chr4_1:51269227-51269246 Msa0553980:intron 25.0%
! CAGAAAACAAATGAAAAAGA+GGG - chr4_1:51269329-51269348 None:intergenic 25.0%
! ACAGAAAACAAATGAAAAAG+AGG - chr4_1:51269330-51269349 None:intergenic 25.0%
! AACCTGTATTTAAGTAATGA+TGG + chr4_1:51269376-51269395 Msa0553980:intron 25.0%
! TAAATGATAGAGTATACTTC+TGG + chr4_1:51269557-51269576 Msa0553980:intron 25.0%
!! GCATTTTGTATCTGAAAAAT+TGG - chr4_1:51269805-51269824 None:intergenic 25.0%
!! AAAATGCCAAGTTTTTAACA+AGG + chr4_1:51269818-51269837 Msa0553980:intron 25.0%
! TTCAAACCTTGTTAAAAACT+TGG - chr4_1:51269827-51269846 None:intergenic 25.0%
! ACAATCTTAATTGCAAGATT+GGG - chr4_1:51269929-51269948 None:intergenic 25.0%
! AACAATCTTAATTGCAAGAT+TGG - chr4_1:51269930-51269949 None:intergenic 25.0%
! TATGTTACAATTATTTGGCA+AGG - chr4_1:51270051-51270070 None:intergenic 25.0%
!! CAAAATTAAAGTGTTTGTCA+TGG + chr4_1:51270093-51270112 Msa0553980:intron 25.0%
! ATTTATAGGATTATCTTAGG+CGG + chr4_1:51270171-51270190 Msa0553980:intron 25.0%
!! AAAGCTTGATTTTCTCTTTT+AGG + chr4_1:51270198-51270217 Msa0553980:intron 25.0%
!! CTAACAATAACTTCTGTTTT+GGG - chr4_1:51270687-51270706 None:intergenic 25.0%
!! TCTAACAATAACTTCTGTTT+TGG - chr4_1:51270688-51270707 None:intergenic 25.0%
!! CAATTGTGTATTCTGATTTT+TGG - chr4_1:51270778-51270797 None:intergenic 25.0%
! TTATTTGTATACGATGTCAT+TGG + chr4_1:51271338-51271357 Msa0553980:three_prime_UTR 25.0%
! ACAAGTATTACAAAAACCAT+AGG + chr4_1:51271420-51271439 Msa0553980:three_prime_UTR 25.0%
!! AAGATTTATGGAGTATTTCT+AGG + chr4_1:51271531-51271550 Msa0553980:three_prime_UTR 25.0%
!! CATATCATATCTCTTTGAAA+AGG - chr4_1:51271581-51271600 None:intergenic 25.0%
!! GTTTAGATGGATTTTGAAAG+GGG - chr4_1:51265611-51265630 None:intergenic 30.0%
!! GGTTTAGATGGATTTTGAAA+GGG - chr4_1:51265612-51265631 None:intergenic 30.0%
TCAAAGGAAAAGAGATTTGA+AGG - chr4_1:51265804-51265823 None:intergenic 30.0%
ACAAAAGAGTAGTGAATCAA+AGG - chr4_1:51265820-51265839 None:intergenic 30.0%
!!! ATGTCATAGGTTTTAGGTAT+TGG - chr4_1:51265866-51265885 None:intergenic 30.0%
TTGTAAGATGAAGATGAACA+GGG - chr4_1:51266337-51266356 None:intergenic 30.0%
ATTGTAAGATGAAGATGAAC+AGG - chr4_1:51266338-51266357 None:intergenic 30.0%
GTTATAATGACAACACCTTA+TGG - chr4_1:51266442-51266461 None:intergenic 30.0%
! TTCATCTATCTAAAGCTAAC+AGG - chr4_1:51266473-51266492 None:intergenic 30.0%
! TTTAGTGCAGCTTTTCAATT+TGG + chr4_1:51266563-51266582 Msa0553980:intron 30.0%
! TTAGTGCAGCTTTTCAATTT+GGG + chr4_1:51266564-51266583 Msa0553980:intron 30.0%
ATTGTCCATGTTTAACAAAC+CGG - chr4_1:51266704-51266723 None:intergenic 30.0%
AAACATGTTAGGTATGAAGT+AGG + chr4_1:51266977-51266996 Msa0553980:intron 30.0%
GTAACATCTAGTGATAGATA+AGG - chr4_1:51267220-51267239 None:intergenic 30.0%
! TGAGTCAAATCAAATTTTCC+GGG - chr4_1:51267265-51267284 None:intergenic 30.0%
AAATCTGTGCAATGAACAAT+GGG - chr4_1:51267349-51267368 None:intergenic 30.0%
AAAATCTGTGCAATGAACAA+TGG - chr4_1:51267350-51267369 None:intergenic 30.0%
CTAACAGATATTTGGAAATC+CGG - chr4_1:51267623-51267642 None:intergenic 30.0%
! CAAAATTTTACTACAAACCG+AGG - chr4_1:51267860-51267879 None:intergenic 30.0%
!! CTCGGTTTGTAGTAAAATTT+TGG + chr4_1:51267858-51267877 Msa0553980:intron 30.0%
GTGTATTTAGATTATTGGAG+CGG + chr4_1:51267908-51267927 Msa0553980:intron 30.0%
CAATTTGGGTAATTTGGAAA+TGG + chr4_1:51267983-51268002 Msa0553980:intron 30.0%
AAATGCGATTGATGAAATTG+TGG + chr4_1:51268035-51268054 Msa0553980:intron 30.0%
CTTGTATTATGAATGGTGTT+GGG + chr4_1:51268116-51268135 Msa0553980:intron 30.0%
! AGTAGGTAGTTTTTGTCAAT+GGG + chr4_1:51268156-51268175 Msa0553980:intron 30.0%
TCACAAAAGTTGTCATCAAA+TGG - chr4_1:51268532-51268551 None:intergenic 30.0%
ATAGAGAAAAAGGAAGAAAG+AGG + chr4_1:51268593-51268612 Msa0553980:intron 30.0%
TGTCAAAAGTTGTCACAAAA+TGG + chr4_1:51268647-51268666 Msa0553980:intron 30.0%
ACAAATATCATTTCACTTGG+TGG + chr4_1:51268674-51268693 Msa0553980:intron 30.0%
TGGGAAATATCAAATGTCAT+TGG + chr4_1:51268860-51268879 Msa0553980:intron 30.0%
TCATTTGATCTTGCATCATA+GGG - chr4_1:51269024-51269043 None:intergenic 30.0%
TATATTTCAAGCAAAGCAGA+TGG + chr4_1:51269060-51269079 Msa0553980:CDS 30.0%
ATATTTCAAGCAAAGCAGAT+GGG + chr4_1:51269061-51269080 Msa0553980:CDS 30.0%
!! TTGAGAAGGTTTAATGGATT+TGG + chr4_1:51269155-51269174 Msa0553980:intron 30.0%
!! TGAGAAGGTTTAATGGATTT+GGG + chr4_1:51269156-51269175 Msa0553980:intron 30.0%
GCCTGAAAAGAAAAGAAAAA+AGG - chr4_1:51269231-51269250 None:intergenic 30.0%
! CTCTATGCTGTAATTTTGTT+TGG + chr4_1:51269596-51269615 Msa0553980:intron 30.0%
GAGTCAAGATTGTTAATCAT+CGG + chr4_1:51269709-51269728 Msa0553980:intron 30.0%
!! TTAATCATCGGTTCATAACA+TGG + chr4_1:51269721-51269740 Msa0553980:intron 30.0%
! GGTTTCTTCATATGGTTTTT+GGG + chr4_1:51270122-51270141 Msa0553980:intron 30.0%
TTTATAGGATTATCTTAGGC+GGG + chr4_1:51270172-51270191 Msa0553980:intron 30.0%
!! TTTTAGGAGACATCTTTGTT+GGG + chr4_1:51270214-51270233 Msa0553980:intron 30.0%
! TTTTCAGTAACACCTTAGTA+AGG - chr4_1:51270453-51270472 None:intergenic 30.0%
AATACTAGGATACTACATCA+AGG - chr4_1:51270476-51270495 None:intergenic 30.0%
ATTTATTGCCTCTCAATACT+AGG - chr4_1:51270490-51270509 None:intergenic 30.0%
! AAATGTTAGTGCCTTAGTTT+TGG + chr4_1:51270516-51270535 Msa0553980:intron 30.0%
TTGAGCACTAAATCCATATT+GGG - chr4_1:51270839-51270858 None:intergenic 30.0%
ATTGAGCACTAAATCCATAT+TGG - chr4_1:51270840-51270859 None:intergenic 30.0%
AACGCAAATTGATGTAAAAG+AGG + chr4_1:51270958-51270977 Msa0553980:intron 30.0%
! TCGTTTTACAGTTCATTATC+TGG - chr4_1:51271005-51271024 None:intergenic 30.0%
TAATGTTTCCAATGTTTGTG+TGG + chr4_1:51271095-51271114 Msa0553980:intron 30.0%
GTGATGACATGGTTTAATAT+TGG + chr4_1:51271392-51271411 Msa0553980:three_prime_UTR 30.0%
! CTCTTTGAAAAGGAAAACAA+GGG - chr4_1:51271571-51271590 None:intergenic 30.0%
! TCTCTTTGAAAAGGAAAACA+AGG - chr4_1:51271572-51271591 None:intergenic 30.0%
!! GGGTTTAGATGGATTTTGAA+AGG - chr4_1:51265613-51265632 None:intergenic 35.0%
AGAGTTACTACTAACCAGAA+GGG - chr4_1:51265774-51265793 None:intergenic 35.0%
TAGAGTTACTACTAACCAGA+AGG - chr4_1:51265775-51265794 None:intergenic 35.0%
!!! GTTTTAGGTATTGGACATTG+TGG - chr4_1:51265857-51265876 None:intergenic 35.0%
!! AAAGTGGAGTTTGTTAGTCA+GGG - chr4_1:51266266-51266285 None:intergenic 35.0%
TGTAAGATGAAGATGAACAG+GGG - chr4_1:51266336-51266355 None:intergenic 35.0%
AAAATAACATCTGGGAAGCT+AGG - chr4_1:51266595-51266614 None:intergenic 35.0%
CGGTCGAAAAAATAACATCT+GGG - chr4_1:51266603-51266622 None:intergenic 35.0%
TCGGTCGAAAAAATAACATC+TGG - chr4_1:51266604-51266623 None:intergenic 35.0%
!!! AGATGTTATTTTTTCGACCG+AGG + chr4_1:51266603-51266622 Msa0553980:intron 35.0%
TGTTTAACAAACCGGACTTT+CGG - chr4_1:51266696-51266715 None:intergenic 35.0%
!! AAAGTCCGGTTTGTTAAACA+TGG + chr4_1:51266696-51266715 Msa0553980:intron 35.0%
AAACATGGACAATAAGCTAG+TGG + chr4_1:51266711-51266730 Msa0553980:intron 35.0%
!! AGTGAATGGCTTTGAAGATT+GGG - chr4_1:51266898-51266917 None:intergenic 35.0%
! TGCGCTACTTTGGTATAAAT+GGG - chr4_1:51267107-51267126 None:intergenic 35.0%
! TTGCGCTACTTTGGTATAAA+TGG - chr4_1:51267108-51267127 None:intergenic 35.0%
! TGTTCATTGCACAGATTTTG+TGG + chr4_1:51267351-51267370 Msa0553980:intron 35.0%
TTAGGTTTGTGCTTCAACAA+TGG + chr4_1:51267403-51267422 Msa0553980:exon 35.0%
! AAACTTATGGGCTGAATTTG+AGG - chr4_1:51267488-51267507 None:intergenic 35.0%
AACCCTCACTTTCTTTATTC+CGG + chr4_1:51267601-51267620 Msa0553980:intron 35.0%
ATCCGGAATAAAGAAAGTGA+GGG - chr4_1:51267606-51267625 None:intergenic 35.0%
AATCCGGAATAAAGAAAGTG+AGG - chr4_1:51267607-51267626 None:intergenic 35.0%
GCGGATACAAAATTACGAAA+GGG + chr4_1:51267938-51267957 Msa0553980:intron 35.0%
CGGATACAAAATTACGAAAG+GGG + chr4_1:51267939-51267958 Msa0553980:intron 35.0%
ACAAAATTACGAAAGGGGTT+TGG + chr4_1:51267944-51267963 Msa0553980:intron 35.0%
TAATTTGGCATGCGACAATT+TGG + chr4_1:51267968-51267987 Msa0553980:intron 35.0%
AATTTGGCATGCGACAATTT+GGG + chr4_1:51267969-51267988 Msa0553980:intron 35.0%
ATGCGACAATTTGGGTAATT+TGG + chr4_1:51267977-51267996 Msa0553980:intron 35.0%
TGAAATTGTGGAGGAGATTA+AGG + chr4_1:51268047-51268066 Msa0553980:intron 35.0%
CATTCATAATACAAGCAAGG+CGG - chr4_1:51268111-51268130 None:intergenic 35.0%
CACCATTCATAATACAAGCA+AGG - chr4_1:51268114-51268133 None:intergenic 35.0%
GCTTGTATTATGAATGGTGT+TGG + chr4_1:51268115-51268134 Msa0553980:intron 35.0%
! GAGTAGGTAGTTTTTGTCAA+TGG + chr4_1:51268155-51268174 Msa0553980:intron 35.0%
! GTAGGTAGTTTTTGTCAATG+GGG + chr4_1:51268157-51268176 Msa0553980:intron 35.0%
! GTTTTTGTCAATGGGGTTTT+CGG + chr4_1:51268164-51268183 Msa0553980:intron 35.0%
! TTTTTGTCAATGGGGTTTTC+GGG + chr4_1:51268165-51268184 Msa0553980:intron 35.0%
!! CAGGCGGATTATGAATAAAT+TGG + chr4_1:51268423-51268442 Msa0553980:intron 35.0%
GTGTCTATGAATGAGACTTT+AGG + chr4_1:51268482-51268501 Msa0553980:intron 35.0%
! AATATCATTTCACTTGGTGG+TGG + chr4_1:51268677-51268696 Msa0553980:intron 35.0%
!! TATATAACTTTTGGGGAGCA+AGG - chr4_1:51268756-51268775 None:intergenic 35.0%
TGTCAACATAGCTGAATTAC+TGG + chr4_1:51268840-51268859 Msa0553980:intron 35.0%
GTCAACATAGCTGAATTACT+GGG + chr4_1:51268841-51268860 Msa0553980:intron 35.0%
GGATTCATGTGATGAATTTC+AGG + chr4_1:51268950-51268969 Msa0553980:intron 35.0%
TTCATGTGATGAATTTCAGG+AGG + chr4_1:51268953-51268972 Msa0553980:intron 35.0%
GTCATTTGATCTTGCATCAT+AGG - chr4_1:51269025-51269044 None:intergenic 35.0%
ATGATGCAAGATCAAATGAC+TGG + chr4_1:51269025-51269044 Msa0553980:CDS 35.0%
TATTTCAAGCAAAGCAGATG+GGG + chr4_1:51269062-51269081 Msa0553980:CDS 35.0%
! GTGTTGTTGAGAAGGTTTAA+TGG + chr4_1:51269149-51269168 Msa0553980:intron 35.0%
! ATCACAAATACGTTTGTTGC+TGG + chr4_1:51269267-51269286 Msa0553980:CDS 35.0%
GGCCATCATTACTTAAATAC+AGG - chr4_1:51269381-51269400 None:intergenic 35.0%
!!! TTCAGCACTGGTTTTTTACA+AGG - chr4_1:51269450-51269469 None:intergenic 35.0%
!!! CCTAAGGTTTGCTTTTTCTT+GGG + chr4_1:51269487-51269506 Msa0553980:intron 35.0%
!!! TTGCTTTTTCTTGGGTAGTT+AGG + chr4_1:51269495-51269514 Msa0553980:intron 35.0%
! CTTTTGCATATGTGTGAACA+CGG - chr4_1:51269776-51269795 None:intergenic 35.0%
!!! GGATTGGCAAATATTTTGGT+GGG - chr4_1:51269905-51269924 None:intergenic 35.0%
!! AGGATTGGCAAATATTTTGG+TGG - chr4_1:51269906-51269925 None:intergenic 35.0%
ATCTTAATTGCAAGATTGGG+AGG - chr4_1:51269926-51269945 None:intergenic 35.0%
! TTAAAGTGTTTGTCATGGTG+TGG + chr4_1:51270098-51270117 Msa0553980:intron 35.0%
! TAAAGTGTTTGTCATGGTGT+GGG + chr4_1:51270099-51270118 Msa0553980:intron 35.0%
! GGGTTTCTTCATATGGTTTT+TGG + chr4_1:51270121-51270140 Msa0553980:intron 35.0%
!! TCTTCATATGGTTTTTGGGA+TGG + chr4_1:51270126-51270145 Msa0553980:intron 35.0%
!! CTTTTAGGAGACATCTTTGT+TGG + chr4_1:51270213-51270232 Msa0553980:intron 35.0%
TTTGTTGGGCATAAAATGCA+TGG + chr4_1:51270228-51270247 Msa0553980:intron 35.0%
CATAAAATGCATGGCAACAA+AGG + chr4_1:51270237-51270256 Msa0553980:intron 35.0%
CTCAAGGAGATAGTAAGTAA+TGG + chr4_1:51270294-51270313 Msa0553980:intron 35.0%
GAGATAGTAAGTAATGGTGA+TGG + chr4_1:51270300-51270319 Msa0553980:intron 35.0%
!! TCGTGACTTTTAAAGAGTCA+AGG + chr4_1:51270402-51270421 Msa0553980:intron 35.0%
! TGTAGTATCCTAGTATTGAG+AGG + chr4_1:51270479-51270498 Msa0553980:intron 35.0%
! CTAAGGCACTAACATTTCAA+TGG - chr4_1:51270513-51270532 None:intergenic 35.0%
TAGTCCATTCTCCAAAACTA+AGG - chr4_1:51270530-51270549 None:intergenic 35.0%
AACTGCAAGTTCTCAAATCA+TGG + chr4_1:51270799-51270818 Msa0553980:intron 35.0%
ACTGCAAGTTCTCAAATCAT+GGG + chr4_1:51270800-51270819 Msa0553980:intron 35.0%
ACAACTTTCTTCTGCAATGA+GGG - chr4_1:51270916-51270935 None:intergenic 35.0%
AGAAGAAAGTTGTGCTTTGT+AGG + chr4_1:51270923-51270942 Msa0553980:intron 35.0%
GGAGAAAAGAAACAGTAATC+AGG + chr4_1:51270979-51270998 Msa0553980:intron 35.0%
CATCAATAGGTGAATTGACT+TGG + chr4_1:51271201-51271220 Msa0553980:exon 35.0%
! ATATTTTGCCCATACGATAG+AGG + chr4_1:51271266-51271285 Msa0553980:three_prime_UTR 35.0%
! TATTTTGCCCATACGATAGA+GGG + chr4_1:51271267-51271286 Msa0553980:three_prime_UTR 35.0%
TTTGTATACGATGTCATTGG+CGG + chr4_1:51271341-51271360 Msa0553980:three_prime_UTR 35.0%
CATCACAATTATTGCTCCTA+TGG - chr4_1:51271439-51271458 None:intergenic 35.0%
TTTGAAAAGGAAAACAAGGG+TGG - chr4_1:51271568-51271587 None:intergenic 35.0%
TAAACCCCAAGCACAAGAAA+GGG + chr4_1:51265626-51265645 Msa0553980:five_prime_UTR 40.0%
TTATGTCGTCAGACTCATTC+TGG - chr4_1:51266017-51266036 None:intergenic 40.0%
!! GAAAGTGGAGTTTGTTAGTC+AGG - chr4_1:51266267-51266286 None:intergenic 40.0%
TAGGACATAGTGAAGGAAAG+TGG - chr4_1:51266282-51266301 None:intergenic 40.0%
AGAGGATTAGGACATAGTGA+AGG - chr4_1:51266289-51266308 None:intergenic 40.0%
CATGATTGAATCAGATGCCT+CGG - chr4_1:51266623-51266642 None:intergenic 40.0%
GTTTAACAAACCGGACTTTC+GGG - chr4_1:51266695-51266714 None:intergenic 40.0%
!! CAGTGAATGGCTTTGAAGAT+TGG - chr4_1:51266899-51266918 None:intergenic 40.0%
CAACAGACGGAAACAAATGA+AGG - chr4_1:51266947-51266966 None:intergenic 40.0%
TCAACAGTGGGCAAACTTAT+GGG - chr4_1:51267500-51267519 None:intergenic 40.0%
CGCAATTGTTCCAAATGTCT+TGG - chr4_1:51267535-51267554 None:intergenic 40.0%
! AGTGTTGTTAGTGGAGTCAT+GGG + chr4_1:51267563-51267582 Msa0553980:CDS 40.0%
TACAAACCGAGGACGAAAAA+GGG - chr4_1:51267849-51267868 None:intergenic 40.0%
CGCGGATACAAAATTACGAA+AGG + chr4_1:51267937-51267956 Msa0553980:intron 40.0%
TGCGATTGATGAAATTGTGG+AGG + chr4_1:51268038-51268057 Msa0553980:intron 40.0%
CGCCTTGCTTGTATTATGAA+TGG + chr4_1:51268109-51268128 Msa0553980:intron 40.0%
TTTGCTGCCATGGTTGTTTA+CGG + chr4_1:51268188-51268207 Msa0553980:intron 40.0%
! CAGCTCCCTCTAGTTTATAT+GGG + chr4_1:51268242-51268261 Msa0553980:intron 40.0%
GCAGACCCATATAAACTAGA+GGG - chr4_1:51268250-51268269 None:intergenic 40.0%
AGCAGACCCATATAAACTAG+AGG - chr4_1:51268251-51268270 None:intergenic 40.0%
TTTATATGGGTCTGCTGTTC+TGG + chr4_1:51268255-51268274 Msa0553980:intron 40.0%
!!! TTCTGGTTTTAGGTCTGGTT+GGG + chr4_1:51268272-51268291 Msa0553980:intron 40.0%
TTGAGTCCTCCACCTAAATA+CGG + chr4_1:51268344-51268363 Msa0553980:intron 40.0%
! GTATAGTGTTGTTCCAACTG+AGG - chr4_1:51268715-51268734 None:intergenic 40.0%
AGAGACATTGCAAGTTGTTG+AGG + chr4_1:51268900-51268919 Msa0553980:intron 40.0%
ATGTGATGAATTTCAGGAGG+TGG + chr4_1:51268956-51268975 Msa0553980:intron 40.0%
!! AGCCAAAGCATTTGCTGTTA+TGG + chr4_1:51269102-51269121 Msa0553980:CDS 40.0%
!! GCCAAAGCATTTGCTGTTAT+GGG + chr4_1:51269103-51269122 Msa0553980:CDS 40.0%
ACCCATAACAGCAAATGCTT+TGG - chr4_1:51269107-51269126 None:intergenic 40.0%
TTTGTTGCTGGATGTACTAC+TGG + chr4_1:51269279-51269298 Msa0553980:CDS 40.0%
TAAGTAATGATGGCCAGACA+TGG + chr4_1:51269386-51269405 Msa0553980:intron 40.0%
ATTATGCTCCTACACCTCAT+GGG - chr4_1:51269424-51269443 None:intergenic 40.0%
AATTATGCTCCTACACCTCA+TGG - chr4_1:51269425-51269444 None:intergenic 40.0%
!!! GCCTAAGGTTTGCTTTTTCT+TGG + chr4_1:51269486-51269505 Msa0553980:intron 40.0%
CCCAAGAAAAAGCAAACCTT+AGG - chr4_1:51269490-51269509 None:intergenic 40.0%
CGTGTTCACACATATGCAAA+AGG + chr4_1:51269774-51269793 Msa0553980:intron 40.0%
!! GGGAGGATTGGCAAATATTT+TGG - chr4_1:51269909-51269928 None:intergenic 40.0%
AATTGCAAGATTGGGAGGAT+TGG - chr4_1:51269921-51269940 None:intergenic 40.0%
ATTGCGGTTCTGTCTGTTAT+TGG + chr4_1:51269971-51269990 Msa0553980:intron 40.0%
TTGCGGTTCTGTCTGTTATT+GGG + chr4_1:51269972-51269991 Msa0553980:intron 40.0%
AAGTAAGATCCTTGACGACT+TGG - chr4_1:51270003-51270022 None:intergenic 40.0%
! AAAGTGTTTGTCATGGTGTG+GGG + chr4_1:51270100-51270119 Msa0553980:intron 40.0%
GTCTTTGTAGTGCATACTCA+AGG + chr4_1:51270278-51270297 Msa0553980:intron 40.0%
!! AAGCATTGGTAATCATGAGC+CGG + chr4_1:51270336-51270355 Msa0553980:intron 40.0%
GTTGAACTGCATTCACAACA+GGG + chr4_1:51270424-51270443 Msa0553980:intron 40.0%
!!! AGTGCCTTAGTTTTGGAGAA+TGG + chr4_1:51270523-51270542 Msa0553980:intron 40.0%
CACAAAGTGATGTTCATCCA+GGG + chr4_1:51270605-51270624 Msa0553980:intron 40.0%
CTAGAAGGTTTCTGTCTTTG+TGG + chr4_1:51270633-51270652 Msa0553980:intron 40.0%
CTGCAAGTTCTCAAATCATG+GGG + chr4_1:51270801-51270820 Msa0553980:intron 40.0%
CACAACTTTCTTCTGCAATG+AGG - chr4_1:51270917-51270936 None:intergenic 40.0%
TCCAATGTTTGTGTGGTTGT+AGG + chr4_1:51271102-51271121 Msa0553980:intron 40.0%
ACCTACAACCACACAAACAT+TGG - chr4_1:51271106-51271125 None:intergenic 40.0%
AATGTTTGTGTGGTTGTAGG+TGG + chr4_1:51271105-51271124 Msa0553980:intron 40.0%
TGTCGTCATAGAGAAGTTTC+TGG + chr4_1:51271173-51271192 Msa0553980:CDS 40.0%
! TCATAGAGAAGTTTCTGGAG+AGG + chr4_1:51271178-51271197 Msa0553980:CDS 40.0%
TCACAGAGCTTTCCTAAGTT+CGG - chr4_1:51271376-51271395 None:intergenic 40.0%
TCTTGTGCTTGGGGTTTAGA+TGG - chr4_1:51265624-51265643 None:intergenic 45.0%
CTAAACCCCAAGCACAAGAA+AGG + chr4_1:51265625-51265644 Msa0553980:five_prime_UTR 45.0%
ACAACCCTTTCTTGTGCTTG+GGG - chr4_1:51265633-51265652 None:intergenic 45.0%
CACAACCCTTTCTTGTGCTT+GGG - chr4_1:51265634-51265653 None:intergenic 45.0%
AAGATGAAGATGAACAGGGG+CGG - chr4_1:51266333-51266352 None:intergenic 45.0%
TAATCTGGTGTGTGTGGCTA+TGG - chr4_1:51266827-51266846 None:intergenic 45.0%
AGGCAATAATCTGGTGTGTG+TGG - chr4_1:51266833-51266852 None:intergenic 45.0%
CTCGGTTAGTGATCAGTGAA+TGG - chr4_1:51266912-51266931 None:intergenic 45.0%
CCTTGTGTATTGCGCTACTT+TGG - chr4_1:51267117-51267136 None:intergenic 45.0%
CCAAAGTAGCGCAATACACA+AGG + chr4_1:51267114-51267133 Msa0553980:intron 45.0%
TATGTATCCAATCACGTGCC+CGG + chr4_1:51267244-51267263 Msa0553980:intron 45.0%
! AAATTTTCCGGGCACGTGAT+TGG - chr4_1:51267254-51267273 None:intergenic 45.0%
AAACCTAAGATACGCAAGGC+TGG - chr4_1:51267391-51267410 None:intergenic 45.0%
GCACAAACCTAAGATACGCA+AGG - chr4_1:51267395-51267414 None:intergenic 45.0%
CTCAACAGTGGGCAAACTTA+TGG - chr4_1:51267501-51267520 None:intergenic 45.0%
CATAAGTTTGCCCACTGTTG+AGG + chr4_1:51267499-51267518 Msa0553980:CDS 45.0%
AAATTCGCGGCCAAGACATT+TGG + chr4_1:51267522-51267541 Msa0553980:CDS 45.0%
! CAGTGTTGTTAGTGGAGTCA+TGG + chr4_1:51267562-51267581 Msa0553980:CDS 45.0%
!! ACATTGCCCTTTTTCGTCCT+CGG + chr4_1:51267840-51267859 Msa0553980:intron 45.0%
CTACAAACCGAGGACGAAAA+AGG - chr4_1:51267850-51267869 None:intergenic 45.0%
CGAAAGGGGTTTGGCTAATT+TGG + chr4_1:51267953-51267972 Msa0553980:intron 45.0%
TTGCTGCCATGGTTGTTTAC+GGG + chr4_1:51268189-51268208 Msa0553980:intron 45.0%
! GCAGCTCCCTCTAGTTTATA+TGG + chr4_1:51268241-51268260 Msa0553980:intron 45.0%
!!! TGCTGTTCTGGTTTTAGGTC+TGG + chr4_1:51268267-51268286 Msa0553980:intron 45.0%
!!! GTTCTGGTTTTAGGTCTGGT+TGG + chr4_1:51268271-51268290 Msa0553980:intron 45.0%
! AAACGAGCACCGTATTTAGG+TGG - chr4_1:51268356-51268375 None:intergenic 45.0%
! CCAAAACGAGCACCGTATTT+AGG - chr4_1:51268359-51268378 None:intergenic 45.0%
! CCTAAATACGGTGCTCGTTT+TGG + chr4_1:51268356-51268375 Msa0553980:intron 45.0%
!! ATTTCACTTGGTGGTGGTTG+TGG + chr4_1:51268683-51268702 Msa0553980:intron 45.0%
GTTGTGGTTGTAACCTCAGT+TGG + chr4_1:51268699-51268718 Msa0553980:intron 45.0%
TGAATTTCAGGAGGTGGTCT+TGG + chr4_1:51268962-51268981 Msa0553980:intron 45.0%
! ATCGCCATGGGATTGTTTCT+TGG + chr4_1:51268986-51269005 Msa0553980:CDS 45.0%
TGCTCCAAGAAACAATCCCA+TGG - chr4_1:51268993-51269012 None:intergenic 45.0%
! TGCTGAGTGTGTTGTTGAGA+AGG + chr4_1:51269141-51269160 Msa0553980:CDS 45.0%
GGAGCTGCTATATCAGCAAA+AGG + chr4_1:51269300-51269319 Msa0553980:CDS 45.0%
! AACCTTAGGCTAGTCACTTC+TGG - chr4_1:51269476-51269495 None:intergenic 45.0%
GCAATCTGGTAGGATTGTGT+GGG - chr4_1:51269956-51269975 None:intergenic 45.0%
CACACAATCCTACCAGATTG+CGG + chr4_1:51269955-51269974 Msa0553980:intron 45.0%
TAACAGACAGAACCGCAATC+TGG - chr4_1:51269970-51269989 None:intergenic 45.0%
TGGGATAATCCAAGTCGTCA+AGG + chr4_1:51269991-51270010 Msa0553980:intron 45.0%
AAGTGTTTGTCATGGTGTGG+GGG + chr4_1:51270101-51270120 Msa0553980:intron 45.0%
!! AGCATTGGTAATCATGAGCC+GGG + chr4_1:51270337-51270356 Msa0553980:intron 45.0%
TTCTCTCTTCCAGTCTTCCA+GGG - chr4_1:51270376-51270395 None:intergenic 45.0%
ATTCTCTCTTCCAGTCTTCC+AGG - chr4_1:51270377-51270396 None:intergenic 45.0%
GGTTGAACTGCATTCACAAC+AGG + chr4_1:51270423-51270442 Msa0553980:intron 45.0%
ACAACAGGGACTCCTTACTA+AGG + chr4_1:51270438-51270457 Msa0553980:intron 45.0%
GCACAAAGTGATGTTCATCC+AGG + chr4_1:51270604-51270623 Msa0553980:intron 45.0%
GAAGGTTTCTGTCTTTGTGG+TGG + chr4_1:51270636-51270655 Msa0553980:intron 45.0%
! AAATCATGGGGTTCTGACAG+TGG + chr4_1:51270813-51270832 Msa0553980:intron 45.0%
CTCTATGACGACAGAGAATG+CGG - chr4_1:51271166-51271185 None:intergenic 45.0%
!! GTTTCTGGAGAGGCATCAAT+AGG + chr4_1:51271188-51271207 Msa0553980:CDS 45.0%
ATCACGTCCCTCTATCGTAT+GGG - chr4_1:51271277-51271296 None:intergenic 45.0%
TATCACGTCCCTCTATCGTA+TGG - chr4_1:51271278-51271297 None:intergenic 45.0%
ATACGATAGAGGGACGTGAT+AGG + chr4_1:51271277-51271296 Msa0553980:three_prime_UTR 45.0%
TACGATAGAGGGACGTGATA+GGG + chr4_1:51271278-51271297 Msa0553980:three_prime_UTR 45.0%
AGGAAAGCTCTGTGATGACA+TGG + chr4_1:51271381-51271400 Msa0553980:three_prime_UTR 45.0%
GCACAACCCTTTCTTGTGCT+TGG - chr4_1:51265635-51265654 None:intergenic 50.0%
!! GGAGTTTGTTAGTCAGGGAC+AGG - chr4_1:51266261-51266280 None:intergenic 50.0%
GTCAGTAGGAACTCACCGTA+TGG + chr4_1:51266793-51266812 Msa0553980:intron 50.0%
ACTGATCACTAACCGAGCTG+AGG + chr4_1:51266915-51266934 Msa0553980:intron 50.0%
CTGATCACTAACCGAGCTGA+GGG + chr4_1:51266916-51266935 Msa0553980:intron 50.0%
TGAAGGTCTTTCCCTCAGCT+CGG - chr4_1:51266930-51266949 None:intergenic 50.0%
CAACCAGCCTTGCGTATCTT+AGG + chr4_1:51267385-51267404 Msa0553980:five_prime_UTR 50.0%
CCGCGAATTTCCTCAACAGT+GGG - chr4_1:51267512-51267531 None:intergenic 50.0%
CCCACTGTTGAGGAAATTCG+CGG + chr4_1:51267509-51267528 Msa0553980:CDS 50.0%
TTATTGGAGCGGAGAAGTCG+CGG + chr4_1:51267919-51267938 Msa0553980:intron 50.0%
AGGAGATTAAGGTCCTGTCG+TGG + chr4_1:51268058-51268077 Msa0553980:intron 50.0%
TTAAGGTCCTGTCGTGGAGA+TGG + chr4_1:51268064-51268083 Msa0553980:intron 50.0%
TCAAACTCCATCTCCACGAC+AGG - chr4_1:51268074-51268093 None:intergenic 50.0%
! TATGAATGGTGTTGGGACCC+CGG + chr4_1:51268123-51268142 Msa0553980:intron 50.0%
TACCTACTCACACAATCGCC+GGG - chr4_1:51268144-51268163 None:intergenic 50.0%
CTACCTACTCACACAATCGC+CGG - chr4_1:51268145-51268164 None:intergenic 50.0%
CCAAGACCCGTAAACAACCA+TGG - chr4_1:51268198-51268217 None:intergenic 50.0%
CCATGGTTGTTTACGGGTCT+TGG + chr4_1:51268195-51268214 Msa0553980:intron 50.0%
!!! GGGTCTGCTGTTCTGGTTTT+AGG + chr4_1:51268262-51268281 Msa0553980:intron 50.0%
AGGTCTGGTTGGGTGATGTT+CGG + chr4_1:51268282-51268301 Msa0553980:intron 50.0%
CCTAAAAACCAGCCACAGAC+CGG - chr4_1:51268324-51268343 None:intergenic 50.0%
! GGGATTGTTTCTTGGAGCAC+TGG + chr4_1:51268994-51269013 Msa0553980:CDS 50.0%
CACTTCTGGTCATTCAGCAC+TGG - chr4_1:51269462-51269481 None:intergenic 50.0%
!! GACCAGAAGTGACTAGCCTA+AGG + chr4_1:51269471-51269490 Msa0553980:intron 50.0%
CGCAATCTGGTAGGATTGTG+TGG - chr4_1:51269957-51269976 None:intergenic 50.0%
AGACAGAACCGCAATCTGGT+AGG - chr4_1:51269966-51269985 None:intergenic 50.0%
GGTGTGGGGGTTTCTTCATA+TGG + chr4_1:51270114-51270133 Msa0553980:intron 50.0%
GAGTGCATGCACACAAGCAT+TGG + chr4_1:51270322-51270341 Msa0553980:intron 50.0%
TCTCTCTTCCAGTCTTCCAG+GGG - chr4_1:51270375-51270394 None:intergenic 50.0%
! TCATCCAGGGCACTTCTAGA+AGG + chr4_1:51270618-51270637 Msa0553980:intron 50.0%
!! GAAACCTTCTAGAAGTGCCC+TGG - chr4_1:51270625-51270644 None:intergenic 50.0%
GTTCTGACAGTGGCCCAATA+TGG + chr4_1:51270823-51270842 Msa0553980:intron 50.0%
TGGTCCACAAGCTGCATGTA+TGG + chr4_1:51271125-51271144 Msa0553980:CDS 50.0%
GGTCCACAAGCTGCATGTAT+GGG + chr4_1:51271126-51271145 Msa0553980:CDS 50.0%
CATCCCATACATGCAGCTTG+TGG - chr4_1:51271132-51271151 None:intergenic 50.0%
CGGATGCATCTTCCGAACTT+AGG + chr4_1:51271361-51271380 Msa0553980:three_prime_UTR 50.0%
ATGAAGATGAACAGGGGCGG+AGG - chr4_1:51266330-51266349 None:intergenic 55.0%
TCGACCAGTGACCTAGTGAC+CGG + chr4_1:51266667-51266686 Msa0553980:intron 55.0%
!! ACTTTCGGGTTCCGGTCACT+AGG - chr4_1:51266681-51266700 None:intergenic 55.0%
!! CAAACCGGACTTTCGGGTTC+CGG - chr4_1:51266689-51266708 None:intergenic 55.0%
GAACTCACCGTATGGCTGTG+TGG + chr4_1:51266801-51266820 Msa0553980:intron 55.0%
GCTATGGCCACACAGCCATA+CGG - chr4_1:51266811-51266830 None:intergenic 55.0%
GCCGCGAATTTCCTCAACAG+TGG - chr4_1:51267513-51267532 None:intergenic 55.0%
! GCTGTGCGCAGTGTTGTTAG+TGG + chr4_1:51267554-51267573 Msa0553980:CDS 55.0%
ACCTACTCACACAATCGCCG+GGG - chr4_1:51268143-51268162 None:intergenic 55.0%
!!! GGTTTTCGGGTTTGCTGCCA+TGG + chr4_1:51268178-51268197 Msa0553980:intron 55.0%
TTACGGGTCTTGGCGTGTTG+TGG + chr4_1:51268205-51268224 Msa0553980:intron 55.0%
TACGGGTCTTGGCGTGTTGT+GGG + chr4_1:51268206-51268225 Msa0553980:intron 55.0%
!! TGTTCGGTGCAGTCCTTGTG+TGG + chr4_1:51268298-51268317 Msa0553980:intron 55.0%
!!! CCGGTCTGTGGCTGGTTTTT+AGG + chr4_1:51268321-51268340 Msa0553980:intron 55.0%
! CGAGCACCGTATTTAGGTGG+AGG - chr4_1:51268353-51268372 None:intergenic 55.0%
! AGCTTTTGCGTGTCTTGCGC+AGG + chr4_1:51268404-51268423 Msa0553980:intron 55.0%
! TTTTGCGTGTCTTGCGCAGG+CGG + chr4_1:51268407-51268426 Msa0553980:intron 55.0%
AAGCAAAGCAGATGGGGCGA+AGG + chr4_1:51269068-51269087 Msa0553980:CDS 55.0%
ACACACCTCCCATGAGGTGT+AGG + chr4_1:51269413-51269432 Msa0553980:intron 55.0%
ATGCTCCTACACCTCATGGG+AGG - chr4_1:51269421-51269440 None:intergenic 55.0%
CTTGTATGCCCCTGGAAGAC+TGG + chr4_1:51270364-51270383 Msa0553980:intron 55.0%
CAAAGGGGGTCTGGTGTGAA+TGG + chr4_1:51270578-51270597 Msa0553980:intron 55.0%
GCTGCATGTATGGGATGTGC+TGG + chr4_1:51271135-51271154 Msa0553980:CDS 55.0%
GAGGGACGTGATAGGGTGTA+AGG + chr4_1:51271285-51271304 Msa0553980:three_prime_UTR 55.0%
AGGGAGTCACCACTCACCAC+CGG - chr4_1:51265755-51265774 None:intergenic 60.0%
GGTGAGTGGTGACTCCCTTC+TGG + chr4_1:51265757-51265776 Msa0553980:five_prime_UTR 60.0%
CGGCTGCGGTGAAGAGGATT+AGG - chr4_1:51266301-51266320 None:intergenic 60.0%
ATGAACAGGGGCGGAGGAGA+AGG - chr4_1:51266324-51266343 None:intergenic 60.0%
GGTTCCGGTCACTAGGTCAC+TGG - chr4_1:51266674-51266693 None:intergenic 60.0%
GTGACCGGAACCCGAAAGTC+CGG + chr4_1:51266682-51266701 Msa0553980:intron 60.0%
ACCCCGGCGATTGTGTGAGT+AGG + chr4_1:51268139-51268158 Msa0553980:intron 60.0%
ACGGGTCTTGGCGTGTTGTG+GGG + chr4_1:51268207-51268226 Msa0553980:intron 60.0%
ACTAGAGGGAGCTGCTGTCC+AGG - chr4_1:51268236-51268255 None:intergenic 60.0%
! AGGTGGTCTTGGCATCGCCA+TGG + chr4_1:51268973-51268992 Msa0553980:CDS 60.0%
! GGTGGTCTTGGCATCGCCAT+GGG + chr4_1:51268974-51268993 Msa0553980:CDS 60.0%
AGCAGATGGGGCGAAGGAGT+TGG + chr4_1:51269074-51269093 Msa0553980:CDS 60.0%
GAGGTGTGTCAGGCCATGTC+TGG - chr4_1:51269402-51269421 None:intergenic 60.0%
! CACCTCATGGGAGGTGTGTC+AGG - chr4_1:51269412-51269431 None:intergenic 60.0%
CTCTCCACCGTCCTCCTCTC+CGG + chr4_1:51265733-51265752 Msa0553980:five_prime_UTR 65.0%
CTCACCACCGGAGAGGAGGA+CGG - chr4_1:51265743-51265762 None:intergenic 65.0%
TCCTCCTCTCCGGTGGTGAG+TGG + chr4_1:51265743-51265762 Msa0553980:five_prime_UTR 65.0%
ACCACTCACCACCGGAGAGG+AGG - chr4_1:51265747-51265766 None:intergenic 65.0%
GTCACCACTCACCACCGGAG+AGG - chr4_1:51265750-51265769 None:intergenic 65.0%
AGAAGGCGGCTGCGGTGAAG+AGG - chr4_1:51266307-51266326 None:intergenic 65.0%
AACAGGGGCGGAGGAGAAGG+CGG - chr4_1:51266321-51266340 None:intergenic 65.0%
GGTCTTGGCGTGTTGTGGGG+TGG + chr4_1:51268210-51268229 Msa0553980:intron 65.0%
CGGTGCAGTCCTTGTGTGGC+CGG + chr4_1:51268302-51268321 Msa0553980:intron 65.0%
GTCCTTGTGTGGCCGGTCTG+TGG + chr4_1:51268309-51268328 Msa0553980:intron 65.0%
AGCCACAGACCGGCCACACA+AGG - chr4_1:51268314-51268333 None:intergenic 65.0%
TTGTGTGGCCGGTCTGTGGC+TGG + chr4_1:51268313-51268332 Msa0553980:intron 65.0%
GGCCTGACACACCTCCCATG+AGG + chr4_1:51269407-51269426 Msa0553980:intron 65.0%
! CAGGGGCATACAAGCGAGCC+CGG - chr4_1:51270358-51270377 None:intergenic 65.0%
TCCACCGTCCTCCTCTCCGG+TGG + chr4_1:51265736-51265755 Msa0553980:five_prime_UTR 70.0%
ACCACCGGAGAGGAGGACGG+TGG - chr4_1:51265740-51265759 None:intergenic 70.0%
TGGCGTGTTGTGGGGTGGCC+TGG + chr4_1:51268215-51268234 Msa0553980:intron 70.0%
CGGGCTCGCTTGTATGCCCC+TGG + chr4_1:51270356-51270375 Msa0553980:intron 70.0%
GGCGGAGGAGAAGGCGGCTG+CGG - chr4_1:51266315-51266334 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51265575 51271616 51265575 ID=Msa0553980;Name=Msa0553980
chr4_1 mRNA 51265575 51271616 51265575 ID=Msa0553980-mRNA-1;Parent=Msa0553980;Name=Msa0553980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=301|1|1|1|0.6|0.5|6|407|170
chr4_1 exon 51265575 51265778 51265575 ID=Msa0553980-mRNA-1:exon:14606;Parent=Msa0553980-mRNA-1
chr4_1 exon 51266318 51266357 51266318 ID=Msa0553980-mRNA-1:exon:14607;Parent=Msa0553980-mRNA-1
chr4_1 exon 51267365 51267584 51267365 ID=Msa0553980-mRNA-1:exon:14608;Parent=Msa0553980-mRNA-1
chr4_1 exon 51268972 51269162 51268972 ID=Msa0553980-mRNA-1:exon:14609;Parent=Msa0553980-mRNA-1
chr4_1 exon 51269249 51269321 51269249 ID=Msa0553980-mRNA-1:exon:14610;Parent=Msa0553980-mRNA-1
chr4_1 exon 51271124 51271616 51271124 ID=Msa0553980-mRNA-1:exon:14611;Parent=Msa0553980-mRNA-1
chr4_1 five_prime_UTR 51265575 51265778 51265575 ID=Msa0553980-mRNA-1:five_prime_utr;Parent=Msa0553980-mRNA-1
chr4_1 five_prime_UTR 51266318 51266357 51266318 ID=Msa0553980-mRNA-1:five_prime_utr;Parent=Msa0553980-mRNA-1
chr4_1 five_prime_UTR 51267365 51267421 51267365 ID=Msa0553980-mRNA-1:five_prime_utr;Parent=Msa0553980-mRNA-1
chr4_1 CDS 51267422 51267584 51267422 ID=Msa0553980-mRNA-1:cds;Parent=Msa0553980-mRNA-1
chr4_1 CDS 51268972 51269162 51268972 ID=Msa0553980-mRNA-1:cds;Parent=Msa0553980-mRNA-1
chr4_1 CDS 51269249 51269321 51269249 ID=Msa0553980-mRNA-1:cds;Parent=Msa0553980-mRNA-1
chr4_1 CDS 51271124 51271209 51271124 ID=Msa0553980-mRNA-1:cds;Parent=Msa0553980-mRNA-1
chr4_1 three_prime_UTR 51271210 51271616 51271210 ID=Msa0553980-mRNA-1:three_prime_utr;Parent=Msa0553980-mRNA-1
Gene Sequence

>Msa0553980

ATGGCTGATGAGTCGCAAAAAGCTGCTTCAAATGATTCTGTGAACTCAAAAGAAGTCGAGAAGCCTCAAATTCAGCCCATAAGTTTGCCCACTGTTGAGGAAATTCGCGGCCAAGACATTTGGAACAATTGCGCTGTGCGCAGTGTTGTTAGTGGAGTCATGGGAGGTGGTCTTGGCATCGCCATGGGATTGTTTCTTGGAGCACTGGACAACCCTATGATGCAAGATCAAATGACTGGCAAACAGCAGTTTATATTTCAAGCAAAGCAGATGGGGCGAAGGAGTTGGAGTTCAGCCAAAGCATTTGCTGTTATGGGTTTCGTATTCTCAGCTGCTGAGTGTGTTGTTGAGAAGGCACGAGCAAAACATGACATCACAAATACGTTTGTTGCTGGATGTACTACTGGAGCTGCTATATCAGCAAAAGGTGGTCCACAAGCTGCATGTATGGGATGTGCTGGCTTTGCCGCATTCTCTGTCGTCATAGAGAAGTTTCTGGAGAGGCATCAATAG
Protein sequence

>Msa0553980

MADESQKAASNDSVNSKEVEKPQIQPISLPTVEEIRGQDIWNNCAVRSVVSGVMGGGLGIAMGLFLGALDNPMMQDQMTGKQQFIFQAKQMGRRSWSSAKAFAVMGFVFSAAECVVEKARAKHDITNTFVAGCTTGAAISAKGGPQAACMGCAGFAAFSVVIEKFLERHQ*