AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789680 MtrunA17_Chr5g0409981 96.941 523 15 1 1 522 1 523 0.0 1043
Msa0789680 MtrunA17_Chr2g0330401 50.388 387 184 4 101 485 94 474 4.30e-128 382
Msa0789680 MtrunA17_Chr6g0449911 43.609 399 210 8 86 481 152 538 1.28e-103 326
Msa0789680 MtrunA17_Chr2g0293631 43.073 397 215 7 93 486 486 874 3.08e-97 319
Msa0789680 MtrunA17_Chr7g0270131 43.655 394 211 7 93 482 222 608 5.48e-94 302
Msa0789680 MtrunA17_Chr3g0121351 39.862 434 238 8 68 486 114 539 2.90e-87 281
Msa0789680 MtrunA17_Chr4g0058591 44.817 328 173 4 101 426 200 521 6.48e-87 277
Msa0789680 MtrunA17_Chr1g0176041 38.839 448 251 8 69 500 124 564 2.64e-86 278
Msa0789680 MtrunA17_Chr2g0277821 42.746 386 209 6 101 481 502 880 4.05e-86 287
Msa0789680 MtrunA17_Chr4g0063551 41.346 416 221 8 85 484 126 534 6.35e-86 279
Msa0789680 MtrunA17_Chr3g0107851 38.845 381 221 5 101 473 115 491 1.92e-80 261
Msa0789680 MtrunA17_Chr1g0200181 38.191 398 229 8 94 481 136 526 4.72e-78 256
Msa0789680 MtrunA17_Chr1g0157691 37.468 395 230 8 94 478 138 525 2.27e-76 251
Msa0789680 MtrunA17_Chr4g0076491 37.157 401 220 6 106 483 290 681 6.14e-75 250
Msa0789680 MtrunA17_Chr6g0449741 36.207 406 225 7 101 483 247 641 4.79e-73 244
Msa0789680 MtrunA17_Chr5g0442191 36.973 403 228 11 66 457 43 430 9.08e-73 242
Msa0789680 MtrunA17_Chr3g0095031 41.018 334 190 5 118 451 107 433 1.77e-72 240
Msa0789680 MtrunA17_Chr7g0271121 38.333 360 213 6 98 456 105 456 4.28e-67 230
Msa0789680 MtrunA17_Chr1g0193491 36.456 395 232 9 70 460 90 469 1.40e-66 226
Msa0789680 MtrunA17_Chr7g0236841 38.611 360 207 7 95 451 2 350 1.69e-65 219
Msa0789680 MtrunA17_Chr6g0483491 38.611 360 207 7 95 451 2 350 1.73e-65 219
Msa0789680 MtrunA17_Chr6g0475251 37.746 355 206 6 125 474 127 471 1.26e-60 211
Msa0789680 MtrunA17_Chr1g0204391 36.490 359 201 5 118 455 61 413 3.02e-59 206
Msa0789680 MtrunA17_Chr7g0247191 32.713 376 235 5 85 457 132 492 2.82e-58 202
Msa0789680 MtrunA17_Chr7g0247221 32.713 376 235 5 85 457 125 485 4.68e-58 201
Msa0789680 MtrunA17_Chr7g0247181 32.713 376 235 5 85 457 122 482 6.00e-58 201
Msa0789680 MtrunA17_Chr3g0098121 32.678 407 243 8 104 495 153 543 1.18e-57 204
Msa0789680 MtrunA17_Chr4g0040761 35.014 357 218 7 104 456 20 366 1.42e-57 204
Msa0789680 MtrunA17_Chr2g0300291 32.779 421 250 9 52 462 100 497 3.10e-57 203
Msa0789680 MtrunA17_Chr2g0310581 33.858 381 233 6 92 466 44 411 2.60e-56 196
Msa0789680 MtrunA17_Chr6g0461751 32.727 385 251 7 101 482 138 517 1.77e-54 192
Msa0789680 MtrunA17_Chr4g0070981 33.247 388 238 7 94 472 28 403 3.31e-53 185
Msa0789680 MtrunA17_Chr2g0299681 34.341 364 222 6 95 456 36 384 3.78e-53 185
Msa0789680 MtrunA17_Chr2g0297261 31.856 361 232 4 96 454 27 375 2.10e-52 183
Msa0789680 MtrunA17_Chr8g0342861 32.984 382 236 7 80 456 18 384 2.45e-51 180
Msa0789680 MtrunA17_Chr2g0329931 33.333 369 228 6 94 456 28 384 6.74e-51 179
Msa0789680 MtrunA17_Chr8g0347161 32.450 453 266 15 24 449 18 457 7.36e-51 182
Msa0789680 MtrunA17_Chr8g0347171 31.947 457 261 16 24 449 78 515 4.58e-49 179
Msa0789680 MtrunA17_Chr3g0114081 34.127 378 217 12 103 455 14 384 5.12e-49 178
Msa0789680 MtrunA17_Chr6g0466611 32.308 390 240 9 100 472 139 521 1.69e-47 176
Msa0789680 MtrunA17_Chr8g0347151 33.333 375 225 11 92 449 190 556 4.56e-45 168
Msa0789680 MtrunA17_Chr7g0263771 31.768 362 231 7 119 478 151 498 1.09e-44 166
Msa0789680 MtrunA17_Chr7g0236831 29.825 399 210 9 119 451 181 575 4.26e-42 160
Msa0789680 MtrunA17_Chr8g0386451 30.070 429 244 12 45 449 247 643 7.56e-42 159
Msa0789680 MtrunA17_Chr4g0003441 32.081 346 210 7 119 456 126 454 1.08e-40 153
Msa0789680 MtrunA17_Chr2g0307471 31.793 368 226 9 100 455 88 442 2.13e-40 153
Msa0789680 MtrunA17_Chr4g0062301 33.133 332 207 8 119 444 115 437 2.20e-40 154
Msa0789680 MtrunA17_Chr1g0179761 31.407 398 218 15 88 449 65 443 6.98e-40 150
Msa0789680 MtrunA17_Chr2g0309551 30.562 409 225 11 100 454 106 509 7.03e-39 149
Msa0789680 MtrunA17_Chr4g0029191 27.727 440 241 11 90 455 29 465 2.80e-37 145
Msa0789680 MtrunA17_Chr1g0149251 31.804 327 196 8 139 456 2 310 3.68e-37 140
Msa0789680 MtrunA17_Chr3g0145781 27.932 469 289 18 23 454 50 506 1.18e-36 142
Msa0789680 MtrunA17_Chr2g0301281 27.586 406 222 9 119 455 60 462 2.08e-36 142
Msa0789680 MtrunA17_Chr4g0034411 31.536 371 224 10 97 449 62 420 1.71e-35 141
Msa0789680 MtrunA17_Chr5g0443991 32.047 337 212 8 126 455 101 427 1.58e-34 138
Msa0789680 MtrunA17_Chr1g0192021 28.607 402 232 11 102 456 25 418 2.26e-32 130
Msa0789680 MtrunA17_Chr5g0429221 27.604 384 255 10 101 478 1 367 2.71e-30 122
Msa0789680 MtrunA17_Chr4g0074521 28.571 399 222 17 87 444 65 441 4.20e-25 108
Msa0789680 MtrunA17_Chr1g0169331 26.810 373 228 9 118 456 8 369 1.43e-24 105
Msa0789680 MtrunA17_Chr4g0039471 35.577 208 110 6 92 290 215 407 2.39e-24 105
Msa0789680 MtrunA17_Chr4g0039471 31.746 189 81 4 104 290 3 145 1.78e-15 78.6
Msa0789680 MtrunA17_Chr8g0349951 36.735 147 84 3 95 239 2 141 3.36e-20 87.4
Msa0789680 MtrunA17_Chr4g0058601 56.452 62 27 0 416 477 9 70 6.46e-20 85.5
Msa0789680 MtrunA17_Chr8g0354761 24.566 346 226 10 126 455 33 359 1.47e-19 91.3
Msa0789680 MtrunA17_Chr8g0342851 26.074 326 201 9 132 456 4 290 2.87e-19 89.0
Msa0789680 MtrunA17_Chr3g0137901 37.143 105 66 0 352 456 42 146 5.30e-19 84.7
Msa0789680 MtrunA17_Chr4g0062321 31.132 212 139 5 212 420 26 233 9.28e-18 82.8
Msa0789680 MtrunA17_Chr4g0025131 34.653 202 109 6 89 282 42 228 1.39e-16 80.5
Msa0789680 MtrunA17_Chr1g0171481 23.932 351 252 11 137 481 176 517 4.39e-16 80.9
Msa0789680 MtrunA17_Chr8g0377041 23.500 400 257 10 68 455 234 596 1.70e-15 79.7
Msa0789680 MtrunA17_Chr0c30g0494091 30.631 222 129 9 87 292 65 277 2.23e-14 75.1
Msa0789680 MtrunA17_Chr4g0025141 29.747 158 86 3 353 499 85 228 9.22e-14 71.2
Msa0789680 MtrunA17_Chr8g0364251 35.433 127 73 3 352 476 436 555 2.27e-13 72.8
Msa0789680 MtrunA17_Chr1g0155691 33.333 132 61 5 375 503 27 134 5.33e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789680 AT1G31970.1 77.397 438 98 1 86 522 100 537 0.0 717
Msa0789680 AT5G63120.2 48.284 408 199 6 76 481 143 540 3.37e-128 386
Msa0789680 AT1G55150.1 49.871 387 186 4 101 485 98 478 1.04e-125 377
Msa0789680 AT1G55150.2 49.871 387 186 4 101 485 123 503 9.93e-125 375
Msa0789680 AT5G14610.6 43.928 387 206 7 104 487 163 541 1.36e-102 322
Msa0789680 AT5G14610.2 43.928 387 206 7 104 487 163 541 1.59e-102 322
Msa0789680 AT5G14610.5 43.928 387 206 7 104 487 171 549 3.37e-102 321
Msa0789680 AT3G01540.1 42.894 387 210 7 104 487 160 538 9.67e-101 316
Msa0789680 AT3G01540.4 42.894 387 210 7 104 487 160 538 1.04e-100 316
Msa0789680 AT3G01540.2 42.894 387 210 7 104 487 160 538 1.04e-100 316
Msa0789680 AT3G01540.3 42.894 387 210 7 104 487 160 538 1.04e-100 316
Msa0789680 AT5G14610.7 44.032 377 202 6 112 487 42 410 4.23e-100 311
Msa0789680 AT5G14610.3 44.032 377 202 6 112 487 42 410 4.23e-100 311
Msa0789680 AT3G06480.1 44.750 400 204 8 86 481 423 809 2.37e-99 323
Msa0789680 AT5G14610.1 43.832 381 204 7 109 487 237 609 5.31e-98 312
Msa0789680 AT5G63120.1 45.029 342 176 6 76 415 143 474 6.58e-94 295
Msa0789680 AT5G63120.3 45.029 342 176 6 76 415 143 474 9.85e-94 294
Msa0789680 AT5G63120.4 45.029 342 176 6 76 415 143 474 9.85e-94 294
Msa0789680 AT5G63120.5 45.029 342 176 6 76 415 143 474 9.85e-94 294
Msa0789680 AT2G42520.2 41.966 417 222 7 83 486 144 553 9.38e-91 291
Msa0789680 AT2G42520.1 41.966 417 222 7 83 486 144 553 9.38e-91 291
Msa0789680 AT2G42520.3 41.966 417 222 7 83 486 144 553 9.38e-91 291
Msa0789680 AT1G20920.2 42.105 399 217 7 101 492 190 581 2.64e-90 294
Msa0789680 AT2G47330.1 42.494 393 215 7 93 481 219 604 3.84e-90 292
Msa0789680 AT3G58570.1 42.512 414 212 9 91 486 135 540 6.20e-90 289
Msa0789680 AT1G20920.4 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0789680 AT1G20920.6 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0789680 AT1G20920.3 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0789680 AT1G20920.7 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0789680 AT1G20920.5 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0789680 AT1G20920.1 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0789680 AT3G58510.1 40.465 430 236 9 69 486 122 543 8.43e-88 282
Msa0789680 AT3G58510.3 40.465 430 236 9 69 486 122 543 8.43e-88 282
Msa0789680 AT3G58510.2 40.465 430 236 9 69 486 122 543 8.43e-88 282
Msa0789680 AT3G09620.1 40.415 386 189 8 101 481 395 744 4.76e-81 272
Msa0789680 AT3G09620.2 40.415 386 189 8 101 481 396 745 4.92e-81 272
Msa0789680 AT5G14610.4 42.090 335 183 7 104 435 171 497 8.32e-81 261
Msa0789680 AT5G51280.1 37.561 410 239 8 94 493 138 540 2.72e-79 259
Msa0789680 AT3G06480.2 42.274 343 181 8 86 424 423 752 1.01e-76 257
Msa0789680 AT3G22330.1 41.108 343 193 6 116 457 120 454 1.13e-76 253
Msa0789680 AT4G33370.1 37.288 413 236 9 94 493 89 491 9.41e-76 249
Msa0789680 AT3G22310.2 40.974 349 195 7 106 451 120 460 1.18e-75 250
Msa0789680 AT3G22310.1 40.974 349 195 7 106 451 120 460 1.65e-75 250
Msa0789680 AT2G33730.1 36.207 406 227 6 101 483 312 708 2.63e-71 241
Msa0789680 AT5G26742.1 39.496 357 205 7 109 460 109 459 1.70e-66 229
Msa0789680 AT5G26742.2 39.496 357 205 7 109 460 109 459 1.73e-66 229
Msa0789680 AT5G60990.1 36.264 364 220 6 95 451 2 360 3.13e-66 221
Msa0789680 AT5G26742.3 40.729 329 186 6 135 460 44 366 2.75e-65 224
Msa0789680 AT1G28180.1 37.465 355 214 4 130 483 3 350 1.38e-63 212
Msa0789680 AT5G62190.1 38.012 342 201 6 119 455 115 450 7.87e-62 215
Msa0789680 AT1G16280.1 35.537 363 219 5 99 456 55 407 3.04e-60 206
Msa0789680 AT4G00660.1 34.332 367 221 7 96 457 123 474 1.28e-59 205
Msa0789680 AT4G00660.2 34.332 367 221 7 96 457 123 474 1.28e-59 205
Msa0789680 AT2G45810.1 33.607 366 225 5 96 457 146 497 7.37e-58 201
Msa0789680 AT3G61240.2 31.477 413 256 6 52 457 75 467 1.46e-57 199
Msa0789680 AT3G61240.1 31.477 413 256 6 52 457 75 467 1.46e-57 199
Msa0789680 AT4G16630.1 34.959 369 216 8 104 462 169 523 2.28e-57 204
Msa0789680 AT3G02065.3 32.250 400 255 6 101 491 109 501 5.64e-55 192
Msa0789680 AT3G02065.2 32.250 400 255 6 101 491 109 501 5.64e-55 192
Msa0789680 AT1G77030.1 35.180 361 212 8 104 456 30 376 5.79e-54 196
Msa0789680 AT3G19760.1 32.584 356 226 5 101 454 34 377 1.53e-52 184
Msa0789680 AT3G13920.4 33.515 367 225 6 95 457 28 379 2.59e-52 183
Msa0789680 AT1G72730.1 33.621 348 219 4 119 466 60 395 1.02e-51 182
Msa0789680 AT3G13920.1 33.333 369 228 6 95 457 28 384 1.19e-51 181
Msa0789680 AT3G13920.3 33.424 368 227 6 95 456 18 373 1.25e-51 181
Msa0789680 AT1G54270.2 33.607 366 224 6 95 456 28 378 1.83e-51 181
Msa0789680 AT3G13920.2 33.333 369 228 6 95 457 28 384 3.23e-51 180
Msa0789680 AT3G13920.5 33.333 369 228 6 95 457 32 388 3.61e-51 180
Msa0789680 AT1G51380.1 31.742 356 229 5 101 454 21 364 4.15e-51 179
Msa0789680 AT1G54270.1 33.424 368 227 6 95 456 28 383 9.29e-51 179
Msa0789680 AT3G02065.1 31.892 370 238 5 129 491 2 364 1.09e-49 175
Msa0789680 AT3G09720.2 29.087 471 284 12 23 482 80 511 1.69e-48 176
Msa0789680 AT3G09720.1 29.087 471 284 12 23 482 80 511 1.69e-48 176
Msa0789680 AT4G09730.1 31.186 388 243 9 101 471 111 491 3.93e-48 176
Msa0789680 AT5G08610.1 33.333 372 221 10 96 449 376 738 2.48e-45 171
Msa0789680 AT1G71370.1 32.337 368 231 10 100 455 12 373 7.15e-45 166
Msa0789680 AT5G65900.1 32.133 361 231 8 102 456 154 506 3.94e-44 165
Msa0789680 AT5G63630.1 31.892 370 238 7 91 449 44 410 7.42e-44 163
Msa0789680 AT5G05450.1 33.048 351 216 8 120 455 36 382 9.37e-44 164
Msa0789680 AT5G08620.1 31.436 404 258 10 59 449 39 436 2.76e-43 162
Msa0789680 AT5G63630.2 31.892 370 238 7 91 449 238 604 2.92e-43 164
Msa0789680 AT5G11170.1 32.448 339 214 7 119 454 65 391 3.54e-42 156
Msa0789680 AT5G11200.1 32.448 339 214 7 119 454 65 391 3.54e-42 156
Msa0789680 AT3G18600.1 33.333 336 213 6 119 451 108 435 5.40e-41 155
Msa0789680 AT1G63250.1 32.425 367 233 9 95 449 322 685 3.09e-39 152
Msa0789680 AT3G53110.1 31.510 384 230 13 92 455 81 451 1.29e-38 148
Msa0789680 AT3G16840.2 28.535 396 216 9 120 451 211 603 2.09e-38 150
Msa0789680 AT3G16840.1 28.535 396 216 9 120 451 210 602 2.21e-38 150
Msa0789680 AT2G07750.1 32.425 367 233 9 95 449 369 732 2.99e-38 150
Msa0789680 AT5G11170.2 31.975 319 202 7 139 454 2 308 6.34e-37 140
Msa0789680 AT1G12770.2 27.861 402 242 9 100 453 108 509 1.62e-36 142
Msa0789680 AT1G12770.1 27.861 402 242 9 100 453 108 509 1.62e-36 142
Msa0789680 AT5G54910.1 30.529 416 265 12 97 504 66 465 2.28e-36 144
Msa0789680 AT5G11200.3 29.024 379 215 7 119 454 65 432 1.19e-35 139
Msa0789680 AT2G40700.1 28.117 409 218 12 119 455 50 454 3.93e-34 136
Msa0789680 AT3G06980.1 28.329 413 246 16 91 467 363 761 5.45e-34 137
Msa0789680 AT4G34910.1 28.900 391 229 8 100 445 44 430 1.19e-33 135
Msa0789680 AT1G71280.2 32.075 318 178 10 109 419 24 310 1.13e-31 125
Msa0789680 AT1G71280.1 31.348 319 181 9 109 420 24 311 4.00e-31 126
Msa0789680 AT1G51380.2 30.116 259 167 5 101 357 21 267 3.09e-28 114
Msa0789680 AT5G19210.2 29.759 373 204 15 109 444 83 434 1.55e-27 115
Msa0789680 AT1G51380.4 31.818 220 139 4 101 318 21 231 3.17e-27 112
Msa0789680 AT1G51380.3 31.818 220 139 4 101 318 21 231 5.31e-27 111
Msa0789680 AT4G15850.1 25.707 389 203 12 138 457 73 444 1.01e-23 105
Msa0789680 AT2G28600.1 26.923 312 208 8 174 479 194 491 3.65e-19 90.9
Msa0789680 AT5G11200.2 29.091 220 141 4 237 454 244 450 4.57e-19 90.5
Msa0789680 AT5G11200.2 32.447 188 116 5 119 303 65 244 4.41e-15 78.2
Msa0789680 AT1G28180.2 38.053 113 70 0 130 242 3 115 2.01e-18 81.6
Msa0789680 AT5G19210.1 28.030 264 165 8 201 444 19 277 8.06e-16 79.0
Msa0789680 AT5G19210.3 28.030 264 165 8 201 444 19 277 8.06e-16 79.0
Msa0789680 AT1G27880.1 22.822 482 303 12 25 494 201 625 8.56e-14 74.7
Msa0789680 AT1G27880.2 22.822 482 303 12 25 494 201 625 1.08e-13 74.3
Msa0789680 AT1G59990.1 32.231 121 77 2 353 473 426 541 1.66e-11 67.0
Msa0789680 AT1G59990.2 32.231 121 77 2 353 473 426 541 1.75e-11 67.0

Find 138 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTAGCTCAGGAATTTA+TGG 0.153581 5_3:-57645 Msa0789680:CDS
ACCATGTATCGGCTTGTAAT+TGG 0.198915 5_3:-55806 Msa0789680:three_prime_UTR
GAAGATTATGTTCATAGAAT+TGG 0.238610 5_3:-56474 Msa0789680:CDS
TGGCACACATGTTAAGAAAA+AGG 0.253159 5_3:-56191 Msa0789680:intron
GAATTAGTGAGGAAAGAAAT+AGG 0.254501 5_3:-55612 Msa0789680:three_prime_UTR
ATATAGGAGTCCAAGCTTTA+TGG 0.255279 5_3:-56056 Msa0789680:intron
CGTTATTTATTTCTTCAAAA+AGG 0.256113 5_3:-55882 Msa0789680:three_prime_UTR
GGTGAAGAGGTTTGAGGATT+CGG 0.263054 5_3:-61001 Msa0789680:CDS
GTGAAGAGGTTTGAGGATTC+GGG 0.272367 5_3:-61000 Msa0789680:CDS
GGAATATTTCAGGGACTTGC+TGG 0.276066 5_3:-56274 Msa0789680:intron
TGCGAGCCATGGTAGGAAAA+TGG 0.299824 5_3:+61313 None:intergenic
CTAGGGAAGACACTTGCTTT+TGG 0.301902 5_3:-59882 Msa0789680:intron
GTGGAATCAGTTTGTTTGTA+TGG 0.320024 5_3:-58548 Msa0789680:CDS
ATTCTTCACACATTTGAATA+AGG 0.322677 5_3:-56412 Msa0789680:intron
TTTATCCAGGATATTGTCAT+TGG 0.336374 5_3:-58324 Msa0789680:intron
ACATAATCTTCTAGAGTTAG+AGG 0.337678 5_3:+56486 None:intergenic
TATTCAAGATCTGGTTGAAA+TGG 0.345946 5_3:-58289 Msa0789680:CDS
GAGTTCTGTGTTGTTGTTAA+GGG 0.348271 5_3:+61254 None:intergenic
TTGATTGGAATTGCGGCAAC+TGG 0.349586 5_3:-60883 Msa0789680:CDS
TATAGGAGTCCAAGCTTTAT+GGG 0.366000 5_3:-56055 Msa0789680:intron
CCACAAAAGATACTTCTTGT+AGG 0.370133 5_3:+58256 None:intergenic
ATACTTGGTCAGACATGTTC+TGG 0.373447 5_3:-57866 Msa0789680:intron
CCCACTACTATACCCTAAAT+AGG 0.380591 5_3:-61428 Msa0789680:five_prime_UTR
AAGATTATGTTCATAGAATT+GGG 0.393407 5_3:-56473 Msa0789680:CDS
TGAGTTCTGTGTTGTTGTTA+AGG 0.400441 5_3:+61253 None:intergenic
AGTGATTTGTGGTTGTTTGT+TGG 0.401420 5_3:+58520 None:intergenic
GGAATTGCGGCAACTGGGTC+AGG 0.401748 5_3:-60877 Msa0789680:intron
CAAATAGTCCGCTCTATACT+TGG 0.405601 5_3:-57881 Msa0789680:CDS
AGAAAAGTAAGAAGAAGAAA+AGG 0.406019 5_3:-61128 Msa0789680:CDS
GTTAAGGGTTTGTTCGGGTT+CGG 0.406061 5_3:+61269 None:intergenic
TGGTGGTGATGTGTCGGTTT+CGG 0.407891 5_3:-61082 Msa0789680:CDS
TTCTTTCCAGTCACTGCAAT+CGG 0.408176 5_3:+61048 None:intergenic
CCATGTATCGGCTTGTAATT+GGG 0.408424 5_3:-55805 Msa0789680:three_prime_UTR
CTCCGATTCAATCACGTGCT+TGG 0.415933 5_3:-60930 Msa0789680:CDS
GTTGTTGTTAAGGGTTTGTT+CGG 0.416732 5_3:+61263 None:intergenic
GCTTTATGGGGCTCACTTCA+AGG 0.417352 5_3:-56042 Msa0789680:CDS
TTAGACTTTGGAGCATCAAC+AGG 0.417852 5_3:+56014 None:intergenic
TATTTGCATGACATCATGAT+TGG 0.425052 5_3:+57507 None:intergenic
TTGATCACTACTTCAACATC+TGG 0.425118 5_3:+56519 None:intergenic
TCAAATGTGTGAAGAATGTA+TGG 0.428680 5_3:+56418 None:intergenic
CCAAATTTCAAAAGATCGTC+TGG 0.430831 5_3:+56211 None:intergenic
GAAAACTTAAAATCATACAT+AGG 0.431801 5_3:+55723 None:intergenic
AATTAGTGAGGAAAGAAATA+GGG 0.433180 5_3:-55611 Msa0789680:three_prime_UTR
AACTTGTGACAGGTTGTTGT+AGG 0.435320 5_3:-57547 Msa0789680:intron
AAAACTTAAAATCATACATA+GGG 0.437566 5_3:+55724 None:intergenic
GTTCATAGAATTGGGCGGAC+TGG 0.441574 5_3:-56465 Msa0789680:CDS
GAATGGAAGCTGTCCTTTGA+TGG 0.441746 5_3:-57038 Msa0789680:intron
CAAATCACTGCACTAAAATC+TGG 0.442805 5_3:-58506 Msa0789680:CDS
CCCTCGTAGGAGAGAGCATA+AGG 0.444894 5_3:+59787 None:intergenic
CTTTCTCAGGAATCGAGTAT+TGG 0.445276 5_3:-57328 Msa0789680:intron
CCCAATTACAAGCCGATACA+TGG 0.448445 5_3:+55805 None:intergenic
TTGGATGGTCGTGATTTGAT+TGG 0.453523 5_3:-60898 Msa0789680:CDS
CATGCAAATAGTTGAGGTAT+TGG 0.459321 5_3:-57494 Msa0789680:CDS
TGATGTGGCTGCACGAGGAT+TGG 0.459395 5_3:-56547 Msa0789680:CDS
TCCCGGTCGTATTCAAGATC+TGG 0.466067 5_3:-58298 Msa0789680:CDS
TTCGGGTTCGGTGGATAAAA+CGG 0.468205 5_3:+61281 None:intergenic
GAAGAAAAGGCACAACAAAT+CGG 0.473180 5_3:-61115 Msa0789680:CDS
GAATATTTCAGGGACTTGCT+GGG 0.474454 5_3:-56273 Msa0789680:intron
AACCAGATCTTGAATACGAC+CGG 0.475620 5_3:+58296 None:intergenic
CCTTATGCTCTCTCCTACGA+GGG 0.480938 5_3:-59787 Msa0789680:CDS
GCACTATCATTATTCAAGAA+TGG 0.480956 5_3:-57055 Msa0789680:CDS
GAATGTGCTTGAGTGTTGTA+AGG 0.481590 5_3:-60968 Msa0789680:CDS
CAACACTCAAGCACATTCTC+AGG 0.482405 5_3:+60973 None:intergenic
ATTCAAGATCTGGTTGAAAT+GGG 0.496635 5_3:-58288 Msa0789680:CDS
CGCCGTGTATTTCTCATCTC+CGG 0.502457 5_3:+61023 None:intergenic
TTCATAACATGCATAATAGC+TGG 0.502973 5_3:+59855 None:intergenic
TGATGATGAAGACTAAATAC+TGG 0.503492 5_3:-55970 Msa0789680:exon
ATAAAATAGCATACCATCAA+AGG 0.505839 5_3:+57025 None:intergenic
AAAGAAATAGGGTGAAATGT+AGG 0.506658 5_3:-55600 Msa0789680:three_prime_UTR
AGCAGTTCATCACTTAGCTC+AGG 0.508831 5_3:-57654 Msa0789680:CDS
TGATGTGTCGGTTTCGGCGT+CGG 0.516818 5_3:-61076 Msa0789680:CDS
GCAAAGAGGATTCCGACCCT+TGG 0.519670 5_3:+59809 None:intergenic
GATGAACCGATTGCAGTGAC+TGG 0.523535 5_3:-61054 Msa0789680:CDS
ACTGGACGAGCTGGTAAGAA+AGG 0.524323 5_3:-56447 Msa0789680:CDS
TCCTATTTAGGGTATAGTAG+TGG 0.525758 5_3:+61427 None:intergenic
TTGTTGTTAAGGGTTTGTTC+GGG 0.528332 5_3:+61264 None:intergenic
GTTGGATGAATATTTGAAAG+TGG 0.546670 5_3:-55928 Msa0789680:three_prime_UTR
AGCAGATCGGATGCTTGACA+TGG 0.547306 5_3:-57912 Msa0789680:CDS
GGCCAAGCACGTGATTGAAT+CGG 0.548949 5_3:+60928 None:intergenic
CACGGCGGTGAAGAGGTTTG+AGG 0.550986 5_3:-61007 Msa0789680:CDS
GAAGAGCAAGGGTTCTTCCA+AGG 0.552135 5_3:-59826 Msa0789680:CDS
TGTACAAATGGGAAACCACA+CGG 0.557076 5_3:-57296 Msa0789680:CDS
ATGAATAAGCGGAAGAGCAA+GGG 0.557187 5_3:-59837 Msa0789680:CDS
ATTGGGCGGACTGGACGAGC+TGG 0.562548 5_3:-56456 Msa0789680:CDS
CCTATTTAGGGTATAGTAGT+GGG 0.564824 5_3:+61428 None:intergenic
GAAGTGAGCCCCATAAAGCT+TGG 0.565873 5_3:+56046 None:intergenic
TCAGATGTATTGTGTGATGC+TGG 0.566166 5_3:-58584 Msa0789680:CDS
GCAGTGACTGGAAAGAATGC+CGG 0.570492 5_3:-61042 Msa0789680:CDS
TGGTTATGTTCAGTGCTACA+TGG 0.571493 5_3:-57682 Msa0789680:CDS
AAGGGTTTGTTCGGGTTCGG+TGG 0.571612 5_3:+61272 None:intergenic
GAATCAGTTTGTTTGTATGG+TGG 0.575683 5_3:-58545 Msa0789680:CDS
GATATTGTCATTGGAACTCC+CGG 0.581051 5_3:-58315 Msa0789680:CDS
CCATGGTAGGAAAATGGTGA+TGG 0.581323 5_3:+61319 None:intergenic
AGAAATACACGGCGGTGAAG+AGG 0.583314 5_3:-61014 Msa0789680:CDS
GCCTTATGCTCTCTCCTACG+AGG 0.583509 5_3:-59788 Msa0789680:CDS
TGGAAAGCAGTGTCTATAAG+TGG 0.585177 5_3:-57106 Msa0789680:CDS
GCACGTGATTGAATCGGAGA+AGG 0.586015 5_3:+60934 None:intergenic
TCGTGATTTGATTGGAATTG+CGG 0.593562 5_3:-60890 Msa0789680:CDS
GCATCCGATCTGCTTCATCA+AGG 0.595521 5_3:+57921 None:intergenic
AATATTTCAGGGACTTGCTG+GGG 0.596100 5_3:-56272 Msa0789680:intron
TGATTGGAATTGCGGCAACT+GGG 0.600555 5_3:-60882 Msa0789680:CDS
TGTGATGCTGGTAAATCTTG+TGG 0.600721 5_3:-58572 Msa0789680:CDS
AAGAGCAAGGGTTCTTCCAA+GGG 0.602731 5_3:-59825 Msa0789680:CDS
TGATGTCATGCAAATAGTTG+AGG 0.605250 5_3:-57500 Msa0789680:CDS
GAGGCGAAAAGCTGAAGAGA+TGG 0.606515 5_3:+61362 None:intergenic
TATGAATAAGCGGAAGAGCA+AGG 0.607867 5_3:-59838 Msa0789680:CDS
GCTAAGTGATGAACTGCTAA+CGG 0.609098 5_3:+57659 None:intergenic
GCTACTGATGTGGCTGCACG+AGG 0.611530 5_3:-56552 Msa0789680:CDS
GTACAAATGGGAAACCACAC+GGG 0.611553 5_3:-57295 Msa0789680:CDS
AATGTGCTTGAGTGTTGTAA+GGG 0.615083 5_3:-60967 Msa0789680:CDS
GCAAGGGTTCTTCCAAGGGT+CGG 0.615294 5_3:-59821 Msa0789680:CDS
TTATGCATGTTATGAATAAG+CGG 0.617150 5_3:-59848 Msa0789680:CDS
GTGGAGAAAATGCTTCAACA+AGG 0.622499 5_3:-57273 Msa0789680:CDS
AGGTCCTTGATGAAGCAGAT+CGG 0.623442 5_3:-57925 Msa0789680:CDS
TGCTGGTAAATCTTGTGGTG+TGG 0.625650 5_3:-58567 Msa0789680:CDS
TGGAGAAAATGCTTCAACAA+GGG 0.625673 5_3:-57272 Msa0789680:intron
ACAGGTTGTTGTAGGCTCAG+AGG 0.629287 5_3:-57539 Msa0789680:intron
TGGGCAGATTGCTACTGATG+TGG 0.630709 5_3:-56562 Msa0789680:intron
AAGTAATGGTGGTGATGTGT+CGG 0.630767 5_3:-61088 Msa0789680:CDS
GGAGAGAGCATAAGGCAAAG+AGG 0.632906 5_3:+59795 None:intergenic
TTTCATCTAAACAAAGGACA+AGG 0.633550 5_3:+55637 None:intergenic
GCAGATCGGATGCTTGACAT+GGG 0.636956 5_3:-57911 Msa0789680:CDS
GAAAAGGCACAACAAATCGG+AGG 0.638376 5_3:-61112 Msa0789680:CDS
AACAAATCGGAGGAAAGTAA+TGG 0.643585 5_3:-61102 Msa0789680:CDS
TGTTGAGCTAGCTCCCTCGT+AGG 0.646096 5_3:+59774 None:intergenic
AGTGAAGCAGCTCGAACCAG+AGG 0.649135 5_3:+61343 None:intergenic
ATAGGAGTCCAAGCTTTATG+GGG 0.655015 5_3:-56054 Msa0789680:intron
ACCAGATCTTGAATACGACC+GGG 0.658494 5_3:+58297 None:intergenic
AAATCGGAGGAAAGTAATGG+TGG 0.659280 5_3:-61099 Msa0789680:CDS
CAAATGGGAAACCACACGGG+TGG 0.659561 5_3:-57292 Msa0789680:CDS
TGAAGAGGTTTGAGGATTCG+GGG 0.659903 5_3:-60999 Msa0789680:CDS
AAACTTAAAATCATACATAG+GGG 0.674503 5_3:+55725 None:intergenic
ATCACAGCATGAGCGCACAA+AGG 0.688375 5_3:-57077 Msa0789680:CDS
CAAATGTGTGAAGAATGTAT+GGG 0.699602 5_3:+56419 None:intergenic
TGCCGGAGATGAGAAATACA+CGG 0.715333 5_3:-61025 Msa0789680:CDS
ATGTCTGACCAAGTATAGAG+CGG 0.717626 5_3:+57873 None:intergenic
ATTATGTTCATAGAATTGGG+CGG 0.720125 5_3:-56470 Msa0789680:CDS
CGGAGATGAGAAATACACGG+CGG 0.831076 5_3:-61022 Msa0789680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATCTTTAGTATT+AGG - chr5_3:56290-56309 Msa0789680:intron 10.0%
!! AATATTAATCTTTAGTATTA+GGG - chr5_3:56291-56310 Msa0789680:intron 10.0%
!! AAAAAAAAACTAAAATACAA+GGG + chr5_3:57664-57683 None:intergenic 10.0%
!! AAAAAAAAAACTAAAATACA+AGG + chr5_3:57665-57684 None:intergenic 10.0%
!! AATTTAATTGTCTATAAAAT+AGG + chr5_3:58656-58675 None:intergenic 10.0%
!!! TTCAATGAATATATTTTATT+TGG - chr5_3:58841-58860 Msa0789680:intron 10.0%
!! ATAATATAATAATATATACC+TGG - chr5_3:59815-59834 Msa0789680:CDS 10.0%
!!! TAGAGATTTTATGATTTTTA+GGG + chr5_3:55638-55657 None:intergenic 15.0%
!!! ATAGAGATTTTATGATTTTT+AGG + chr5_3:55639-55658 None:intergenic 15.0%
!!! TGTAACTTTATTTTATCTTT+TGG + chr5_3:56503-56522 None:intergenic 15.0%
!!! ACGTTTAATTTTTATTTGTT+TGG - chr5_3:57361-57380 Msa0789680:intron 15.0%
!!! ATGAATATATTTTATTTGGT+TGG - chr5_3:58845-58864 Msa0789680:intron 15.0%
!! CTTATATATAACAGAAATAA+AGG + chr5_3:60689-60708 None:intergenic 15.0%
!!! TTATTTCTGTTATATATAAG+TGG - chr5_3:60689-60708 Msa0789680:intron 15.0%
!!! AATGTTATTTTTTTAGACTT+TGG + chr5_3:61024-61043 None:intergenic 15.0%
!! AAAACTTAAAATCATACATA+GGG + chr5_3:61302-61321 None:intergenic 15.0%
!! ATGTGTTTGTATTATTGAAA+TGG - chr5_3:56193-56212 Msa0789680:CDS 20.0%
!! TATTATTGAAATGGTTGAAT+TGG - chr5_3:56202-56221 Msa0789680:CDS 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr5_3:56839-56858 Msa0789680:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr5_3:56840-56859 Msa0789680:intron 20.0%
!!! TATCTTTTCTTTTTGTAACT+AGG - chr5_3:57123-57142 Msa0789680:intron 20.0%
!!! ATCTTTTCTTTTTGTAACTA+GGG - chr5_3:57124-57143 Msa0789680:intron 20.0%
!! ATAATAATATCCAAAGAGAA+AGG + chr5_3:57458-57477 None:intergenic 20.0%
!!! TTTAAACAAAGGGTTAATTT+TGG - chr5_3:57692-57711 Msa0789680:CDS 20.0%
!!! ACTTTTTTTTTCTTTCATAG+TGG - chr5_3:57770-57789 Msa0789680:intron 20.0%
!! TAAGTTAAAACAATGTAATG+AGG + chr5_3:58096-58115 None:intergenic 20.0%
!! TAATTGTCTATAAAATAGGA+CGG + chr5_3:58652-58671 None:intergenic 20.0%
!! ATAAGTTAAATAATGTCTTC+AGG - chr5_3:59891-59910 Msa0789680:intron 20.0%
!! TAAGTTAAATAATGTCTTCA+GGG - chr5_3:59892-59911 Msa0789680:intron 20.0%
!! AAAATAACAATTATCCAACA+TGG + chr5_3:60137-60156 None:intergenic 20.0%
!!! TATTTGTTTTCTCAATCTAA+TGG - chr5_3:60441-60460 Msa0789680:intron 20.0%
!!! ATTTGTTTTCTCAATCTAAT+GGG - chr5_3:60442-60461 Msa0789680:intron 20.0%
!! AAGATTATGTTCATAGAATT+GGG - chr5_3:60550-60569 Msa0789680:intron 20.0%
!! TAATATATTCAGAAGAGAAT+CGG + chr5_3:60644-60663 None:intergenic 20.0%
!! ATAACTTTCTGCTTTAATAT+AGG - chr5_3:60951-60970 Msa0789680:CDS 20.0%
!!! CGTTATTTATTTCTTCAAAA+AGG - chr5_3:61141-61160 Msa0789680:CDS 20.0%
!! TCAAAAAGGAAATAAGATAA+TGG - chr5_3:61155-61174 Msa0789680:CDS 20.0%
!! AAACTTAAAATCATACATAG+GGG + chr5_3:61301-61320 None:intergenic 20.0%
!! GAAAACTTAAAATCATACAT+AGG + chr5_3:61303-61322 None:intergenic 20.0%
!!! TAAGTTTTCAAAAACATTTG+AGG - chr5_3:61314-61333 Msa0789680:exon 20.0%
!!! ATTCTTTTTCATCTAAACAA+AGG + chr5_3:61395-61414 None:intergenic 20.0%
! AGAAAAGTAAGAAGAAGAAA+AGG - chr5_3:55895-55914 Msa0789680:three_prime_UTR 25.0%
! TGAAGTTATTTATCCAAACA+GGG + chr5_3:56450-56469 None:intergenic 25.0%
! ATGAAGTTATTTATCCAAAC+AGG + chr5_3:56451-56470 None:intergenic 25.0%
!!! CTTGTTTTCATAATCTATCT+TGG - chr5_3:56544-56563 Msa0789680:CDS 25.0%
! TCAAATAAACCAATCCAAAT+AGG - chr5_3:56675-56694 Msa0789680:intron 25.0%
! ATATTTAGAAATCCACACTT+AGG + chr5_3:57106-57125 None:intergenic 25.0%
! TTATGCATGTTATGAATAAG+CGG - chr5_3:57175-57194 Msa0789680:intron 25.0%
!!! AGTGGAAAATTGTTTTTGAT+TGG - chr5_3:57535-57554 Msa0789680:CDS 25.0%
!!! GTGGAAAATTGTTTTTGATT+GGG - chr5_3:57536-57555 Msa0789680:CDS 25.0%
!! AATGAGTTGGAAATTGTTAA+GGG - chr5_3:57575-57594 Msa0789680:intron 25.0%
! CCACGAACAAAAAAAATATT+TGG + chr5_3:57901-57920 None:intergenic 25.0%
!!! CCAAATATTTTTTTTGTTCG+TGG - chr5_3:57898-57917 Msa0789680:CDS 25.0%
!!! TTTTGGTTATAACATTCCAT+TGG + chr5_3:58137-58156 None:intergenic 25.0%
! GGAATGTTATAACCAAAATT+TGG - chr5_3:58139-58158 Msa0789680:intron 25.0%
!! AAATATCTGCAACCAAATTT+TGG + chr5_3:58154-58173 None:intergenic 25.0%
!!! TTTTGATAGTACCTGTAAAT+TGG - chr5_3:58198-58217 Msa0789680:intron 25.0%
!! TTTGATAGTACCTGTAAATT+GGG - chr5_3:58199-58218 Msa0789680:intron 25.0%
!!! ATACAGTAGAATGTTATTTC+TGG - chr5_3:58271-58290 Msa0789680:CDS 25.0%
!! TCATTTGGTGAATCAATAAA+TGG + chr5_3:58330-58349 None:intergenic 25.0%
! AGAAAAAAGCTCCATAAATA+TGG + chr5_3:58627-58646 None:intergenic 25.0%
! CAATATCCTGGATAAAAAAA+AGG + chr5_3:58695-58714 None:intergenic 25.0%
! AAATTCAGTAGAAATGCAAA+TGG + chr5_3:58942-58961 None:intergenic 25.0%
! AGTGAAACAAAAAATAAGCT+GGG + chr5_3:59289-59308 None:intergenic 25.0%
!! TGAAGATACATACTTTTACA+GGG + chr5_3:59411-59430 None:intergenic 25.0%
!! ATGAAGATACATACTTTTAC+AGG + chr5_3:59412-59431 None:intergenic 25.0%
! AAGATATTTAAACTTGTGAC+AGG - chr5_3:59466-59485 Msa0789680:intron 25.0%
!!! TACAAGATTTTAGCAAAAAG+AGG + chr5_3:59674-59693 None:intergenic 25.0%
! TAAAATCTTGTATCTTTCTC+AGG - chr5_3:59682-59701 Msa0789680:intron 25.0%
!!! TGGTTTTTGTTTTGTACAAA+TGG - chr5_3:59715-59734 Msa0789680:intron 25.0%
!!! GGTTTTTGTTTTGTACAAAT+GGG - chr5_3:59716-59735 Msa0789680:intron 25.0%
! AAGTTAAATAATGTCTTCAG+GGG - chr5_3:59893-59912 Msa0789680:intron 25.0%
! ATAAAATAGCATACCATCAA+AGG + chr5_3:60001-60020 None:intergenic 25.0%
!! GAAAACAATCAAAAGTTGAT+GGG + chr5_3:60099-60118 None:intergenic 25.0%
! AGAAAACAATCAAAAGTTGA+TGG + chr5_3:60100-60119 None:intergenic 25.0%
! ATAAAAAACATCATCTTAGG+AGG + chr5_3:60209-60228 None:intergenic 25.0%
! TGGATAAAAAACATCATCTT+AGG + chr5_3:60212-60231 None:intergenic 25.0%
! GTAAAGCTATAACTTCAAAA+GGG + chr5_3:60260-60279 None:intergenic 25.0%
! TGTAAAGCTATAACTTCAAA+AGG + chr5_3:60261-60280 None:intergenic 25.0%
! GAAGATTATGTTCATAGAAT+TGG - chr5_3:60549-60568 Msa0789680:intron 25.0%
! ATTCTTCACACATTTGAATA+AGG - chr5_3:60611-60630 Msa0789680:intron 25.0%
! ATAACAGAAATAAAGGACAA+AGG + chr5_3:60682-60701 None:intergenic 25.0%
!!! TGGTGACTTACATTTATTTT+TGG - chr5_3:61073-61092 Msa0789680:CDS 25.0%
!!! GACTTACATTTATTTTTGGT+TGG - chr5_3:61077-61096 Msa0789680:CDS 25.0%
!!! ATTTTTGTTGTACCATGTAT+CGG - chr5_3:61206-61225 Msa0789680:CDS 25.0%
! TAGATGAAAAAGAATTAGTG+AGG - chr5_3:61400-61419 Msa0789680:five_prime_UTR 25.0%
! AATTAGTGAGGAAAGAAATA+GGG - chr5_3:61412-61431 Msa0789680:five_prime_UTR 25.0%
!! ACTTTTGACTCTCCTATTTA+GGG + chr5_3:55610-55629 None:intergenic 30.0%
!! CTTACTTTTCTTCTCTGATT+CGG + chr5_3:55886-55905 None:intergenic 30.0%
TGAAAACAGCATATGAACAT+GGG + chr5_3:56701-56720 None:intergenic 30.0%
!! AGTTTTATATCTCTAAACCG+AGG + chr5_3:56866-56885 None:intergenic 30.0%
TTCATAACATGCATAATAGC+TGG + chr5_3:57171-57190 None:intergenic 30.0%
TAGCAATATTGCATCATGTA+TGG - chr5_3:57396-57415 Msa0789680:intron 30.0%
ATCCTTTACTTCTATGAACT+TGG - chr5_3:57432-57451 Msa0789680:intron 30.0%
!!! TGAAACATCTAGCTTTTGAT+TGG - chr5_3:57491-57510 Msa0789680:CDS 30.0%
!!! GAAACATCTAGCTTTTGATT+GGG - chr5_3:57492-57511 Msa0789680:CDS 30.0%
! GAATGAGTTGGAAATTGTTA+AGG - chr5_3:57574-57593 Msa0789680:intron 30.0%
AATTTCCCACTCATAATATC+AGG + chr5_3:57603-57622 None:intergenic 30.0%
GTAGGAATGAAAATTGGAAA+GGG - chr5_3:57723-57742 Msa0789680:intron 30.0%
TAGGAATGAAAATTGGAAAG+GGG - chr5_3:57724-57743 Msa0789680:intron 30.0%
AAAATTGGAAAGGGGAAAAT+GGG - chr5_3:57732-57751 Msa0789680:intron 30.0%
!!! TTTTTTCTTTCATAGTGGCA+TGG - chr5_3:57775-57794 Msa0789680:intron 30.0%
!!! TTTTTTTGTTCGTGGATAAC+TGG - chr5_3:57906-57925 Msa0789680:CDS 30.0%
! AAAGCAACCTTTTGTATCAA+GGG + chr5_3:57965-57984 None:intergenic 30.0%
! AAAAGCAACCTTTTGTATCA+AGG + chr5_3:57966-57985 None:intergenic 30.0%
AATTGTAGAACCCAATTTAC+AGG + chr5_3:58212-58231 None:intergenic 30.0%
AAAGTAACATCCTCTCTATT+GGG + chr5_3:58246-58265 None:intergenic 30.0%
AAAAGTAACATCCTCTCTAT+TGG + chr5_3:58247-58266 None:intergenic 30.0%
ACTGTCTTAAATTTCCAACT+GGG - chr5_3:58296-58315 Msa0789680:CDS 30.0%
! CACAGCTACATTTTATCATT+TGG + chr5_3:58345-58364 None:intergenic 30.0%
ATACAAACCAACAAAAGGAA+AGG + chr5_3:58565-58584 None:intergenic 30.0%
ACAGAATACAAACCAACAAA+AGG + chr5_3:58570-58589 None:intergenic 30.0%
ATTCTGTCAGATACAAGTTA+TGG - chr5_3:58583-58602 Msa0789680:CDS 30.0%
TACAAGTTATGGTTACATTC+TGG - chr5_3:58594-58613 Msa0789680:intron 30.0%
CTGGTTTACTTCCATATTTA+TGG - chr5_3:58613-58632 Msa0789680:intron 30.0%
!!! TTCCTTCCTTTTTTTTATCC+AGG - chr5_3:58686-58705 Msa0789680:intron 30.0%
ATCCTGGATAAAAAAAAGGA+AGG + chr5_3:58691-58710 None:intergenic 30.0%
TTTATCCAGGATATTGTCAT+TGG - chr5_3:58699-58718 Msa0789680:intron 30.0%
TATTCAAGATCTGGTTGAAA+TGG - chr5_3:58734-58753 Msa0789680:intron 30.0%
ATTCAAGATCTGGTTGAAAT+GGG - chr5_3:58735-58754 Msa0789680:intron 30.0%
CAAAACAGAATTCTGACATT+CGG + chr5_3:58803-58822 None:intergenic 30.0%
!! ATTCTGTTTTGTTCTCTCTT+AGG - chr5_3:58812-58831 Msa0789680:intron 30.0%
TAGCGTATTAGCAAATGTAT+TGG + chr5_3:58886-58905 None:intergenic 30.0%
! TACTGAATTTTCTTTGATCC+TGG - chr5_3:58952-58971 Msa0789680:intron 30.0%
ACGACTATAAAATAGACATG+TGG + chr5_3:58989-59008 None:intergenic 30.0%
! ACAAAAAATGGTAATGCACA+AGG + chr5_3:59075-59094 None:intergenic 30.0%
!!! GCATTACCATTTTTTGTTCT+AGG - chr5_3:59078-59097 Msa0789680:intron 30.0%
TATGCTCAGAAGAAATTAGA+AGG + chr5_3:59240-59259 None:intergenic 30.0%
CAGTGAAACAAAAAATAAGC+TGG + chr5_3:59290-59309 None:intergenic 30.0%
! ATACATACTTTTACAGGGTT+GGG + chr5_3:59406-59425 None:intergenic 30.0%
TATTTGCATGACATCATGAT+TGG + chr5_3:59519-59538 None:intergenic 30.0%
!! ATTTTTCTAGTAAAGCAAGC+AGG + chr5_3:59577-59596 None:intergenic 30.0%
GCACTATCATTATTCAAGAA+TGG - chr5_3:59968-59987 Msa0789680:intron 30.0%
! ACCAGTTCATACATAGTTTT+TGG + chr5_3:60064-60083 None:intergenic 30.0%
! TTGTTTTCTCTGCAATACTT+TGG - chr5_3:60111-60130 Msa0789680:intron 30.0%
!! GAAATAAGAACAGAAGTATC+TGG + chr5_3:60232-60251 None:intergenic 30.0%
TGGATTTGAATTCATCTAGT+AGG + chr5_3:60292-60311 None:intergenic 30.0%
!! ACATAATCTTCTAGAGTTAG+AGG + chr5_3:60540-60559 None:intergenic 30.0%
ATTATGTTCATAGAATTGGG+CGG - chr5_3:60553-60572 Msa0789680:intron 30.0%
CAAATGTGTGAAGAATGTAT+GGG + chr5_3:60607-60626 None:intergenic 30.0%
TCAAATGTGTGAAGAATGTA+TGG + chr5_3:60608-60627 None:intergenic 30.0%
TGAATGAATGGGAATATTTC+AGG - chr5_3:60739-60758 Msa0789680:intron 30.0%
GAATGAATGGGAATATTTCA+GGG - chr5_3:60740-60759 Msa0789680:intron 30.0%
TTCATGGAAAAAATCGAAAC+TGG + chr5_3:60890-60909 None:intergenic 30.0%
! TGATGATGAAGACTAAATAC+TGG - chr5_3:61053-61072 Msa0789680:CDS 30.0%
GTTGGATGAATATTTGAAAG+TGG - chr5_3:61095-61114 Msa0789680:CDS 30.0%
GATACATGGTACAACAAAAA+TGG + chr5_3:61207-61226 None:intergenic 30.0%
TTTCATCTAAACAAAGGACA+AGG + chr5_3:61389-61408 None:intergenic 30.0%
GAATTAGTGAGGAAAGAAAT+AGG - chr5_3:61411-61430 Msa0789680:five_prime_UTR 30.0%
AAAGAAATAGGGTGAAATGT+AGG - chr5_3:61423-61442 Msa0789680:five_prime_UTR 30.0%
! CCTATTTAGGGTATAGTAGT+GGG + chr5_3:55598-55617 None:intergenic 35.0%
! TCCTATTTAGGGTATAGTAG+TGG + chr5_3:55599-55618 None:intergenic 35.0%
!! GACTTTTGACTCTCCTATTT+AGG + chr5_3:55611-55630 None:intergenic 35.0%
! TTGTTGTTAAGGGTTTGTTC+GGG + chr5_3:55762-55781 None:intergenic 35.0%
! GTTGTTGTTAAGGGTTTGTT+CGG + chr5_3:55763-55782 None:intergenic 35.0%
! GAGTTCTGTGTTGTTGTTAA+GGG + chr5_3:55772-55791 None:intergenic 35.0%
! TGAGTTCTGTGTTGTTGTTA+AGG + chr5_3:55773-55792 None:intergenic 35.0%
! TCGTCTTCGTGTTTTCTTTT+GGG + chr5_3:55843-55862 None:intergenic 35.0%
! TTCGTCTTCGTGTTTTCTTT+TGG + chr5_3:55844-55863 None:intergenic 35.0%
! GAAGAAAAGGCACAACAAAT+CGG - chr5_3:55908-55927 Msa0789680:three_prime_UTR 35.0%
AACAAATCGGAGGAAAGTAA+TGG - chr5_3:55921-55940 Msa0789680:three_prime_UTR 35.0%
! AATGTGCTTGAGTGTTGTAA+GGG - chr5_3:56056-56075 Msa0789680:intron 35.0%
TCGTGATTTGATTGGAATTG+CGG - chr5_3:56133-56152 Msa0789680:intron 35.0%
GTATTAGGGTCTGTTTGAAT+TGG - chr5_3:56305-56324 Msa0789680:intron 35.0%
CTGAAAACAGCATATGAACA+TGG + chr5_3:56702-56721 None:intergenic 35.0%
AAGATATCCTTGAGAGCTTA+TGG + chr5_3:56732-56751 None:intergenic 35.0%
! TTTTACACTCTCACAACAGT+TGG + chr5_3:56972-56991 None:intergenic 35.0%
AACTTGTACAATCCTAAGTG+TGG - chr5_3:57091-57110 Msa0789680:CDS 35.0%
!! GCTTTTGATTGGGAAGAAAA+TGG - chr5_3:57502-57521 Msa0789680:CDS 35.0%
!! TTAATTTTGGTCTGCTTCGT+AGG - chr5_3:57705-57724 Msa0789680:intron 35.0%
TGCTTCGTAGGAATGAAAAT+TGG - chr5_3:57717-57736 Msa0789680:intron 35.0%
CGTAGGAATGAAAATTGGAA+AGG - chr5_3:57722-57741 Msa0789680:intron 35.0%
GAAAATTGGAAAGGGGAAAA+TGG - chr5_3:57731-57750 Msa0789680:intron 35.0%
!! ACCTGTTTCTATCTTGACAA+TGG - chr5_3:57844-57863 Msa0789680:intron 35.0%
!! CCTGTTTCTATCTTGACAAT+GGG - chr5_3:57845-57864 Msa0789680:intron 35.0%
AGATTTAAGTGACCAATAGC+AGG + chr5_3:58052-58071 None:intergenic 35.0%
GGTTATAACATTCCATTGGA+GGG + chr5_3:58133-58152 None:intergenic 35.0%
TGGTTATAACATTCCATTGG+AGG + chr5_3:58134-58153 None:intergenic 35.0%
GACTGTCTTAAATTTCCAAC+TGG - chr5_3:58295-58314 Msa0789680:CDS 35.0%
! GTGGAATCAGTTTGTTTGTA+TGG - chr5_3:58475-58494 Msa0789680:intron 35.0%
! GAATCAGTTTGTTTGTATGG+TGG - chr5_3:58478-58497 Msa0789680:intron 35.0%
! AGTGATTTGTGGTTGTTTGT+TGG + chr5_3:58506-58525 None:intergenic 35.0%
!! GATTTTAGTGCAGTGATTTG+TGG + chr5_3:58517-58536 None:intergenic 35.0%
CAAATCACTGCACTAAAATC+TGG - chr5_3:58517-58536 Msa0789680:CDS 35.0%
! AGTTCTTCCTTTCCTTTTGT+TGG - chr5_3:58555-58574 Msa0789680:CDS 35.0%
CCACAAAAGATACTTCTTGT+AGG + chr5_3:58770-58789 None:intergenic 35.0%
!!! CCTACAAGAAGTATCTTTTG+TGG - chr5_3:58767-58786 Msa0789680:intron 35.0%
!! ATTTTATTTGGTTGGCTCAC+TGG - chr5_3:58853-58872 Msa0789680:intron 35.0%
!! TTTTATTTGGTTGGCTCACT+GGG - chr5_3:58854-58873 Msa0789680:intron 35.0%
TCGTTATACGTGTTATAAGC+AGG + chr5_3:59051-59070 None:intergenic 35.0%
CAAGGACCTAGAACAAAAAA+TGG + chr5_3:59087-59106 None:intergenic 35.0%
CTCAGAAGAAATTAGAAGGA+AGG + chr5_3:59236-59255 None:intergenic 35.0%
! ATTTTCAACAGCTCGTCAAA+TGG - chr5_3:59321-59340 Msa0789680:intron 35.0%
TCACTTAGCTCAGGAATTTA+TGG - chr5_3:59378-59397 Msa0789680:intron 35.0%
! GATACATACTTTTACAGGGT+TGG + chr5_3:59407-59426 None:intergenic 35.0%
TGATGTCATGCAAATAGTTG+AGG - chr5_3:59523-59542 Msa0789680:intron 35.0%
CATGCAAATAGTTGAGGTAT+TGG - chr5_3:59529-59548 Msa0789680:intron 35.0%
!!! AGGCATACTTTTGAGATTTG+TGG + chr5_3:59601-59620 None:intergenic 35.0%
ATGAACACAGAATCAAAGGT+AGG + chr5_3:59621-59640 None:intergenic 35.0%
CTGAATGAACACAGAATCAA+AGG + chr5_3:59625-59644 None:intergenic 35.0%
! CATTCAGTTGCCTCTTTTTA+CGG - chr5_3:59638-59657 Msa0789680:intron 35.0%
AAGTTGACAACCGTAAAAAG+AGG + chr5_3:59651-59670 None:intergenic 35.0%
TGGAGAAAATGCTTCAACAA+GGG - chr5_3:59751-59770 Msa0789680:intron 35.0%
! ATCAGCAATAACTTGTAACC+AGG + chr5_3:59849-59868 None:intergenic 35.0%
TAAATAATGTCTTCAGGGGT+TGG - chr5_3:59897-59916 Msa0789680:intron 35.0%
!!! TACATAGTTTTTGGCTTCCA+GGG + chr5_3:60055-60074 None:intergenic 35.0%
!!! ATACATAGTTTTTGGCTTCC+AGG + chr5_3:60056-60075 None:intergenic 35.0%
GCCAAAAACTATGTATGAAC+TGG - chr5_3:60060-60079 Msa0789680:intron 35.0%
CTATAACTTCAAAAGGGAGA+AGG + chr5_3:60254-60273 None:intergenic 35.0%
!!! ATCCACTTTTTTATTCCCCT+TGG - chr5_3:60307-60326 Msa0789680:intron 35.0%
! ATTGTTTGTTAAGGACCAAG+GGG + chr5_3:60325-60344 None:intergenic 35.0%
! CATTGTTTGTTAAGGACCAA+GGG + chr5_3:60326-60345 None:intergenic 35.0%
! AGTCTGTCCATTGTTTGTTA+AGG + chr5_3:60334-60353 None:intergenic 35.0%
AAAGTGACAATGACAATGAG+TGG + chr5_3:60410-60429 None:intergenic 35.0%
TTGATCACTACTTCAACATC+TGG + chr5_3:60507-60526 None:intergenic 35.0%
TCCTCTCTCATATGAATGAA+TGG - chr5_3:60727-60746 Msa0789680:intron 35.0%
CCTCTCTCATATGAATGAAT+GGG - chr5_3:60728-60747 Msa0789680:intron 35.0%
CCAAATTTCAAAAGATCGTC+TGG + chr5_3:60815-60834 None:intergenic 35.0%
!!! CCAGACGATCTTTTGAAATT+TGG - chr5_3:60812-60831 Msa0789680:intron 35.0%
TGGCACACATGTTAAGAAAA+AGG - chr5_3:60832-60851 Msa0789680:intron 35.0%
AGTTCATCTTAGTAGCTTCA+TGG + chr5_3:60906-60925 None:intergenic 35.0%
ATATAGGAGTCCAAGCTTTA+TGG - chr5_3:60967-60986 Msa0789680:CDS 35.0%
! TATAGGAGTCCAAGCTTTAT+GGG - chr5_3:60968-60987 Msa0789680:CDS 35.0%
CCCACTACTATACCCTAAAT+AGG - chr5_3:55595-55614 Msa0789680:three_prime_UTR 40.0%
AAATCGGAGGAAAGTAATGG+TGG - chr5_3:55924-55943 Msa0789680:three_prime_UTR 40.0%
! AAGTAATGGTGGTGATGTGT+CGG - chr5_3:55935-55954 Msa0789680:three_prime_UTR 40.0%
TTCTTTCCAGTCACTGCAAT+CGG + chr5_3:55978-55997 None:intergenic 40.0%
! GAATGTGCTTGAGTGTTGTA+AGG - chr5_3:56055-56074 Msa0789680:intron 40.0%
TCACGACCATCCAACAAAAA+CGG + chr5_3:56119-56138 None:intergenic 40.0%
TTGGATGGTCGTGATTTGAT+TGG - chr5_3:56125-56144 Msa0789680:intron 40.0%
!! GTCAGGTTAGTTTGGTACTT+TGG - chr5_3:56163-56182 Msa0789680:intron 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr5_3:56353-56372 Msa0789680:intron 40.0%
CCAAACAGGGCTATATCATA+TGG + chr5_3:56437-56456 None:intergenic 40.0%
CCATATGATATAGCCCTGTT+TGG - chr5_3:56434-56453 Msa0789680:CDS 40.0%
CATATGAACATGGGCCTATT+TGG + chr5_3:56692-56711 None:intergenic 40.0%
CTTATGTCCATAAGCTCTCA+AGG - chr5_3:56722-56741 Msa0789680:intron 40.0%
TGTTTATCCAAATAGGGCCT+CGG - chr5_3:56846-56865 Msa0789680:intron 40.0%
TATGAATAAGCGGAAGAGCA+AGG - chr5_3:57185-57204 Msa0789680:intron 40.0%
ATGAATAAGCGGAAGAGCAA+GGG - chr5_3:57186-57205 Msa0789680:intron 40.0%
GGCCAAGTTCATAGAAGTAA+AGG + chr5_3:57437-57456 None:intergenic 40.0%
! ATGAACTTGGCCTTTCTCTT+TGG - chr5_3:57445-57464 Msa0789680:CDS 40.0%
TGATTGGGAAGAAAATGGCA+AGG - chr5_3:57507-57526 Msa0789680:CDS 40.0%
GATTGGGAAGAAAATGGCAA+GGG - chr5_3:57508-57527 Msa0789680:CDS 40.0%
TGATTGGGAAACAAACGACA+CGG - chr5_3:57551-57570 Msa0789680:intron 40.0%
AGGGATCCTGATATTATGAG+TGG - chr5_3:57594-57613 Msa0789680:intron 40.0%
GGGATCCTGATATTATGAGT+GGG - chr5_3:57595-57614 Msa0789680:intron 40.0%
CCCATTGTCAAGATAGAAAC+AGG + chr5_3:57848-57867 None:intergenic 40.0%
TAGCCTTCCCTTGATACAAA+AGG - chr5_3:57955-57974 Msa0789680:intron 40.0%
! CAACCTTTTGTATCAAGGGA+AGG + chr5_3:57961-57980 None:intergenic 40.0%
GCGAGCACAAGTATGATAAA+AGG + chr5_3:58028-58047 None:intergenic 40.0%
AACATCCTCTCTATTGGGTT+GGG + chr5_3:58241-58260 None:intergenic 40.0%
TAACATCCTCTCTATTGGGT+TGG + chr5_3:58242-58261 None:intergenic 40.0%
AAATGGATCTAGTACCCAGT+TGG + chr5_3:58313-58332 None:intergenic 40.0%
TCAGATGTATTGTGTGATGC+TGG - chr5_3:58439-58458 Msa0789680:intron 40.0%
TGTGATGCTGGTAAATCTTG+TGG - chr5_3:58451-58470 Msa0789680:intron 40.0%
GAGTTCCAATGACAATATCC+TGG + chr5_3:58707-58726 None:intergenic 40.0%
GATATTGTCATTGGAACTCC+CGG - chr5_3:58708-58727 Msa0789680:intron 40.0%
AACCAGATCTTGAATACGAC+CGG + chr5_3:58730-58749 None:intergenic 40.0%
ACGCTAGTGTTGCAATATAC+TGG - chr5_3:58900-58919 Msa0789680:intron 40.0%
CAAATAGTCCGCTCTATACT+TGG - chr5_3:59142-59161 Msa0789680:intron 40.0%
ATGTCTGACCAAGTATAGAG+CGG + chr5_3:59153-59172 None:intergenic 40.0%
ATACTTGGTCAGACATGTTC+TGG - chr5_3:59157-59176 Msa0789680:intron 40.0%
TGGTTATGTTCAGTGCTACA+TGG - chr5_3:59341-59360 Msa0789680:intron 40.0%
GCTAAGTGATGAACTGCTAA+CGG + chr5_3:59367-59386 None:intergenic 40.0%
AACTTGTGACAGGTTGTTGT+AGG - chr5_3:59476-59495 Msa0789680:intron 40.0%
CTTTCTCAGGAATCGAGTAT+TGG - chr5_3:59695-59714 Msa0789680:intron 40.0%
TGTACAAATGGGAAACCACA+CGG - chr5_3:59727-59746 Msa0789680:intron 40.0%
GTGGAGAAAATGCTTCAACA+AGG - chr5_3:59750-59769 Msa0789680:intron 40.0%
!! ATATACCTGGTGAAAGTACC+TGG - chr5_3:59828-59847 Msa0789680:CDS 40.0%
TGGAAAGCAGTGTCTATAAG+TGG - chr5_3:59917-59936 Msa0789680:intron 40.0%
GACCAAGGGGAATAAAAAAG+TGG + chr5_3:60312-60331 None:intergenic 40.0%
! CCATTGTTTGTTAAGGACCA+AGG + chr5_3:60327-60346 None:intergenic 40.0%
CCTTGGTCCTTAACAAACAA+TGG - chr5_3:60324-60343 Msa0789680:intron 40.0%
TGGACAGACTAGTGACTATT+AGG - chr5_3:60344-60363 Msa0789680:intron 40.0%
CCCATTCATTCATATGAGAG+AGG + chr5_3:60731-60750 None:intergenic 40.0%
! GAATATTTCAGGGACTTGCT+GGG - chr5_3:60750-60769 Msa0789680:intron 40.0%
!! AATATTTCAGGGACTTGCTG+GGG - chr5_3:60751-60770 Msa0789680:intron 40.0%
! ATAGGAGTCCAAGCTTTATG+GGG - chr5_3:60969-60988 Msa0789680:CDS 40.0%
!! TTAGACTTTGGAGCATCAAC+AGG + chr5_3:61012-61031 None:intergenic 40.0%
!! ACCATGTATCGGCTTGTAAT+TGG - chr5_3:61217-61236 Msa0789680:CDS 40.0%
!! CCATGTATCGGCTTGTAATT+GGG - chr5_3:61218-61237 Msa0789680:CDS 40.0%
CCATGGTAGGAAAATGGTGA+TGG + chr5_3:55707-55726 None:intergenic 45.0%
! CCATCACCATTTTCCTACCA+TGG - chr5_3:55704-55723 Msa0789680:three_prime_UTR 45.0%
!! TTCGGGTTCGGTGGATAAAA+CGG + chr5_3:55745-55764 None:intergenic 45.0%
! GTTAAGGGTTTGTTCGGGTT+CGG + chr5_3:55757-55776 None:intergenic 45.0%
!!! TTCGGCGTCGTTTTGAAGAT+TGG + chr5_3:55868-55887 None:intergenic 45.0%
! GAAAAGGCACAACAAATCGG+AGG - chr5_3:55911-55930 Msa0789680:three_prime_UTR 45.0%
TGCCGGAGATGAGAAATACA+CGG - chr5_3:55998-56017 Msa0789680:CDS 45.0%
GGTGAAGAGGTTTGAGGATT+CGG - chr5_3:56022-56041 Msa0789680:CDS 45.0%
GTGAAGAGGTTTGAGGATTC+GGG - chr5_3:56023-56042 Msa0789680:CDS 45.0%
TGAAGAGGTTTGAGGATTCG+GGG - chr5_3:56024-56043 Msa0789680:CDS 45.0%
CAACACTCAAGCACATTCTC+AGG + chr5_3:56053-56072 None:intergenic 45.0%
TTGATTGGAATTGCGGCAAC+TGG - chr5_3:56140-56159 Msa0789680:intron 45.0%
TGATTGGAATTGCGGCAACT+GGG - chr5_3:56141-56160 Msa0789680:intron 45.0%
GAACATGGGCCTATTTGGAT+TGG + chr5_3:56687-56706 None:intergenic 45.0%
! CTAGGGAAGACACTTGCTTT+TGG - chr5_3:57141-57160 Msa0789680:intron 45.0%
AAGAGCAAGGGTTCTTCCAA+GGG - chr5_3:57198-57217 Msa0789680:intron 45.0%
GAAAATGGCAAGGGAATGAG+TGG - chr5_3:57517-57536 Msa0789680:CDS 45.0%
GATTGGGAAACAAACGACAC+GGG - chr5_3:57552-57571 Msa0789680:intron 45.0%
AGTTATACCTCTCCCTCCAA+TGG - chr5_3:58118-58137 Msa0789680:intron 45.0%
TAACATTCCATTGGAGGGAG+AGG + chr5_3:58128-58147 None:intergenic 45.0%
TGCTGGTAAATCTTGTGGTG+TGG - chr5_3:58456-58475 Msa0789680:intron 45.0%
ACCAGATCTTGAATACGACC+GGG + chr5_3:58729-58748 None:intergenic 45.0%
AGGTCCTTGATGAAGCAGAT+CGG - chr5_3:59098-59117 Msa0789680:intron 45.0%
AGCAGTTCATCACTTAGCTC+AGG - chr5_3:59369-59388 Msa0789680:intron 45.0%
GTACAAATGGGAAACCACAC+GGG - chr5_3:59728-59747 Msa0789680:intron 45.0%
TGTAACCAGGTACTTTCACC+AGG + chr5_3:59836-59855 None:intergenic 45.0%
GAATGGAAGCTGTCCTTTGA+TGG - chr5_3:59985-60004 Msa0789680:intron 45.0%
!! ATCATATCAGTTTGCTGCCC+TGG - chr5_3:60035-60054 Msa0789680:intron 45.0%
CTGCAATACTTTGGCCATGT+TGG - chr5_3:60120-60139 Msa0789680:intron 45.0%
GGAATATTTCAGGGACTTGC+TGG - chr5_3:60749-60768 Msa0789680:intron 45.0%
!!! GTGAACGTTTTGAGAGAAGC+AGG - chr5_3:60779-60798 Msa0789680:intron 45.0%
CCCAATTACAAGCCGATACA+TGG + chr5_3:61221-61240 None:intergenic 45.0%
!! ATAAAACTAATAAATAAAAT+AGG + chr5_3:57336-57355 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTAAACAA+AGG - chr5_3:57681-57700 Msa0789680:CDS 5.0%
!!! TTTTTTTTTTTTTAAACAAA+GGG - chr5_3:57682-57701 Msa0789680:CDS 5.0%
!! TATTATATTATCAAAAAAAA+TGG + chr5_3:59806-59825 None:intergenic 5.0%
GAGGCGAAAAGCTGAAGAGA+TGG + chr5_3:55664-55683 None:intergenic 50.0%
! TCTCTTCAGCTTTTCGCCTC+TGG - chr5_3:55664-55683 Msa0789680:three_prime_UTR 50.0%
TGCGAGCCATGGTAGGAAAA+TGG + chr5_3:55713-55732 None:intergenic 50.0%
!! TCGTTTTTGCGAGCCATGGT+AGG + chr5_3:55720-55739 None:intergenic 50.0%
!! TGGTGGTGATGTGTCGGTTT+CGG - chr5_3:55941-55960 Msa0789680:three_prime_UTR 50.0%
GATGAACCGATTGCAGTGAC+TGG - chr5_3:55969-55988 Msa0789680:exon 50.0%
GCAGTGACTGGAAAGAATGC+CGG - chr5_3:55981-56000 Msa0789680:CDS 50.0%
CGCCGTGTATTTCTCATCTC+CGG + chr5_3:56003-56022 None:intergenic 50.0%
CGGAGATGAGAAATACACGG+CGG - chr5_3:56001-56020 Msa0789680:CDS 50.0%
AGAAATACACGGCGGTGAAG+AGG - chr5_3:56009-56028 Msa0789680:CDS 50.0%
GCACGTGATTGAATCGGAGA+AGG + chr5_3:56092-56111 None:intergenic 50.0%
CTCCGATTCAATCACGTGCT+TGG - chr5_3:56093-56112 Msa0789680:intron 50.0%
GGCCAAGCACGTGATTGAAT+CGG + chr5_3:56098-56117 None:intergenic 50.0%
!!! ACGTGCTTGGCCGTTTTTGT+TGG - chr5_3:56106-56125 Msa0789680:intron 50.0%
!!! GCTTGGCCGTTTTTGTTGGA+TGG - chr5_3:56110-56129 Msa0789680:intron 50.0%
! GCAACTGGGTCAGGTTAGTT+TGG - chr5_3:56155-56174 Msa0789680:intron 50.0%
CTCTAAACCGAGGCCCTATT+TGG + chr5_3:56856-56875 None:intergenic 50.0%
GAAGAGCAAGGGTTCTTCCA+AGG - chr5_3:57197-57216 Msa0789680:intron 50.0%
! GGAGAGAGCATAAGGCAAAG+AGG + chr5_3:57231-57250 None:intergenic 50.0%
CCTTATGCTCTCTCCTACGA+GGG - chr5_3:57236-57255 Msa0789680:intron 50.0%
CAAACGACACGGGAATGAGT+TGG - chr5_3:57562-57581 Msa0789680:intron 50.0%
ACTCTCCCAACCCAATAGAG+AGG - chr5_3:58233-58252 Msa0789680:intron 50.0%
TCCCGGTCGTATTCAAGATC+TGG - chr5_3:58725-58744 Msa0789680:intron 50.0%
CATGTGGCAACTGTCTATCC+AGG + chr5_3:58973-58992 None:intergenic 50.0%
GCATCCGATCTGCTTCATCA+AGG + chr5_3:59105-59124 None:intergenic 50.0%
AGCAGATCGGATGCTTGACA+TGG - chr5_3:59111-59130 Msa0789680:intron 50.0%
GCAGATCGGATGCTTGACAT+GGG - chr5_3:59112-59131 Msa0789680:intron 50.0%
ACAGGTTGTTGTAGGCTCAG+AGG - chr5_3:59484-59503 Msa0789680:intron 50.0%
! AAGCATTTTCTCCACCCGTG+TGG + chr5_3:59745-59764 None:intergenic 50.0%
ATCACAGCATGAGCGCACAA+AGG - chr5_3:59946-59965 Msa0789680:intron 50.0%
TGGGCAGATTGCTACTGATG+TGG - chr5_3:60461-60480 Msa0789680:intron 50.0%
GTTCATAGAATTGGGCGGAC+TGG - chr5_3:60558-60577 Msa0789680:intron 50.0%
GAAGTGAGCCCCATAAAGCT+TGG + chr5_3:60980-60999 None:intergenic 50.0%
GCTTTATGGGGCTCACTTCA+AGG - chr5_3:60981-61000 Msa0789680:CDS 50.0%
AGTGAAGCAGCTCGAACCAG+AGG + chr5_3:55683-55702 None:intergenic 55.0%
! AAGGGTTTGTTCGGGTTCGG+TGG + chr5_3:55754-55773 None:intergenic 55.0%
!! TGATGTGTCGGTTTCGGCGT+CGG - chr5_3:55947-55966 Msa0789680:three_prime_UTR 55.0%
GCAAGGGTTCTTCCAAGGGT+CGG - chr5_3:57202-57221 Msa0789680:intron 55.0%
GCAAAGAGGATTCCGACCCT+TGG + chr5_3:57217-57236 None:intergenic 55.0%
GCCTTATGCTCTCTCCTACG+AGG - chr5_3:57235-57254 Msa0789680:intron 55.0%
! CCCTCGTAGGAGAGAGCATA+AGG + chr5_3:57239-57258 None:intergenic 55.0%
TGTTGAGCTAGCTCCCTCGT+AGG + chr5_3:57252-57271 None:intergenic 55.0%
CAAATGGGAAACCACACGGG+TGG - chr5_3:59731-59750 Msa0789680:intron 55.0%
TGATGTGGCTGCACGAGGAT+TGG - chr5_3:60476-60495 Msa0789680:intron 55.0%
!!! GGCGTCGTTTTTGCGAGCCA+TGG + chr5_3:55724-55743 None:intergenic 60.0%
CACGGCGGTGAAGAGGTTTG+AGG - chr5_3:56016-56035 Msa0789680:CDS 60.0%
GGAATTGCGGCAACTGGGTC+AGG - chr5_3:56146-56165 Msa0789680:intron 60.0%
CTTGTGCTCGCGCCTGCTAT+TGG - chr5_3:58037-58056 Msa0789680:intron 60.0%
GCTACTGATGTGGCTGCACG+AGG - chr5_3:60471-60490 Msa0789680:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 55584 61461 55584 ID=Msa0789680;Name=Msa0789680
chr5_3 mRNA 55584 61461 55584 ID=Msa0789680-mRNA-1;Parent=Msa0789680;Name=Msa0789680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=139|1|1|1|1|1|12|393|522
chr5_3 exon 55584 56072 55584 ID=Msa0789680-mRNA-1:exon:22;Parent=Msa0789680-mRNA-1
chr5_3 exon 56192 56284 56192 ID=Msa0789680-mRNA-1:exon:21;Parent=Msa0789680-mRNA-1
chr5_3 exon 56413 56577 56413 ID=Msa0789680-mRNA-1:exon:20;Parent=Msa0789680-mRNA-1
chr5_3 exon 57039 57132 57039 ID=Msa0789680-mRNA-1:exon:19;Parent=Msa0789680-mRNA-1
chr5_3 exon 57273 57341 57273 ID=Msa0789680-mRNA-1:exon:18;Parent=Msa0789680-mRNA-1
chr5_3 exon 57433 57557 57433 ID=Msa0789680-mRNA-1:exon:17;Parent=Msa0789680-mRNA-1
chr5_3 exon 57628 57713 57628 ID=Msa0789680-mRNA-1:exon:16;Parent=Msa0789680-mRNA-1
chr5_3 exon 57867 57945 57867 ID=Msa0789680-mRNA-1:exon:15;Parent=Msa0789680-mRNA-1
chr5_3 exon 58257 58337 58257 ID=Msa0789680-mRNA-1:exon:14;Parent=Msa0789680-mRNA-1
chr5_3 exon 58502 58609 58502 ID=Msa0789680-mRNA-1:exon:13;Parent=Msa0789680-mRNA-1
chr5_3 exon 59773 59900 59773 ID=Msa0789680-mRNA-1:exon:12;Parent=Msa0789680-mRNA-1
chr5_3 exon 60878 61461 60878 ID=Msa0789680-mRNA-1:exon:11;Parent=Msa0789680-mRNA-1
chr5_3 five_prime_UTR 61323 61461 61323 ID=Msa0789680-mRNA-1:five_prime_utr;Parent=Msa0789680-mRNA-1
chr5_3 CDS 60878 61322 60878 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 59773 59900 59773 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 58502 58609 58502 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 58257 58337 58257 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 57867 57945 57867 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 57628 57713 57628 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 57433 57557 57433 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 57273 57341 57273 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 57039 57132 57039 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 56413 56577 56413 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 56192 56284 56192 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 CDS 55977 56072 55977 ID=Msa0789680-mRNA-1:cds;Parent=Msa0789680-mRNA-1
chr5_3 three_prime_UTR 55584 55976 55584 ID=Msa0789680-mRNA-1:three_prime_utr;Parent=Msa0789680-mRNA-1
Gene Sequence

>Msa0789680

ATGGCTCGCAAAAACGACGCCGTTTTATCCACCGAACCCGAACAAACCCTTAACAACAACACAGAACTCAAATCTTCGAAGAAGAAGAACAAAAAGAACAAACACGAAGAAAACACTCCCAAAAGAAAACACGAAGACGAAACCAATCTTCAAAACGACGCCGAATCAGAGAAGAAAAGTAAGAAGAAGAAAAGGCACAACAAATCGGAGGAAAGTAATGGTGGTGATGTGTCGGTTTCGGCGTCGGATGAACCGATTGCAGTGACTGGAAAGAATGCCGGAGATGAGAAATACACGGCGGTGAAGAGGTTTGAGGATTCGGGGCTACCTGAGAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCAACTGGGTCAGGGAAGACACTTGCTTTTGGAATACCAGCTATTATGCATGTTATGAATAAGCGGAAGAGCAAGGGTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACGAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCAACAAACAACCACAAATCACTGCACTAAAATCTGGCATTGATATTGTCATTGGAACTCCCGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGGGTGGAGAAAATGCTTCAACAAGGGGGTTGGAAAGCAGTGTCTATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATTTGAATAAGGGACTTGCTGGGGAGCTTGTGAACGTTTTGAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGATGAAGACTAA

Protein sequence

>Msa0789680

MARKNDAVLSTEPEQTLNNNTELKSSKKKNKKNKHEENTPKRKHEDETNLQNDAESEKKSKKKKRHNKSEESNGGDVSVSASDEPIAVTGKNAGDEKYTAVKRFEDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTNKQPQITALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED*