AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0719420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719420 MtrunA17_Chr5g0409981 96.941 523 15 1 1 522 1 523 0.0 1043
Msa0719420 MtrunA17_Chr2g0330401 50.388 387 184 4 101 485 94 474 4.30e-128 382
Msa0719420 MtrunA17_Chr6g0449911 43.609 399 210 8 86 481 152 538 1.28e-103 326
Msa0719420 MtrunA17_Chr2g0293631 43.073 397 215 7 93 486 486 874 3.08e-97 319
Msa0719420 MtrunA17_Chr7g0270131 43.655 394 211 7 93 482 222 608 5.48e-94 302
Msa0719420 MtrunA17_Chr3g0121351 39.862 434 238 8 68 486 114 539 2.90e-87 281
Msa0719420 MtrunA17_Chr4g0058591 44.817 328 173 4 101 426 200 521 6.48e-87 277
Msa0719420 MtrunA17_Chr1g0176041 38.839 448 251 8 69 500 124 564 2.64e-86 278
Msa0719420 MtrunA17_Chr2g0277821 42.746 386 209 6 101 481 502 880 4.05e-86 287
Msa0719420 MtrunA17_Chr4g0063551 41.346 416 221 8 85 484 126 534 6.35e-86 279
Msa0719420 MtrunA17_Chr3g0107851 38.845 381 221 5 101 473 115 491 1.92e-80 261
Msa0719420 MtrunA17_Chr1g0200181 38.191 398 229 8 94 481 136 526 4.72e-78 256
Msa0719420 MtrunA17_Chr1g0157691 37.468 395 230 8 94 478 138 525 2.27e-76 251
Msa0719420 MtrunA17_Chr4g0076491 37.157 401 220 6 106 483 290 681 6.14e-75 250
Msa0719420 MtrunA17_Chr6g0449741 36.207 406 225 7 101 483 247 641 4.79e-73 244
Msa0719420 MtrunA17_Chr5g0442191 36.973 403 228 11 66 457 43 430 9.08e-73 242
Msa0719420 MtrunA17_Chr3g0095031 41.018 334 190 5 118 451 107 433 1.77e-72 240
Msa0719420 MtrunA17_Chr7g0271121 38.333 360 213 6 98 456 105 456 4.28e-67 230
Msa0719420 MtrunA17_Chr1g0193491 36.456 395 232 9 70 460 90 469 1.40e-66 226
Msa0719420 MtrunA17_Chr7g0236841 38.611 360 207 7 95 451 2 350 1.69e-65 219
Msa0719420 MtrunA17_Chr6g0483491 38.611 360 207 7 95 451 2 350 1.73e-65 219
Msa0719420 MtrunA17_Chr6g0475251 37.746 355 206 6 125 474 127 471 1.26e-60 211
Msa0719420 MtrunA17_Chr1g0204391 36.490 359 201 5 118 455 61 413 3.02e-59 206
Msa0719420 MtrunA17_Chr7g0247191 32.713 376 235 5 85 457 132 492 2.82e-58 202
Msa0719420 MtrunA17_Chr7g0247221 32.713 376 235 5 85 457 125 485 4.68e-58 201
Msa0719420 MtrunA17_Chr7g0247181 32.713 376 235 5 85 457 122 482 6.00e-58 201
Msa0719420 MtrunA17_Chr3g0098121 32.678 407 243 8 104 495 153 543 1.18e-57 204
Msa0719420 MtrunA17_Chr4g0040761 35.014 357 218 7 104 456 20 366 1.42e-57 204
Msa0719420 MtrunA17_Chr2g0300291 32.779 421 250 9 52 462 100 497 3.10e-57 203
Msa0719420 MtrunA17_Chr2g0310581 33.858 381 233 6 92 466 44 411 2.60e-56 196
Msa0719420 MtrunA17_Chr6g0461751 32.727 385 251 7 101 482 138 517 1.77e-54 192
Msa0719420 MtrunA17_Chr4g0070981 33.247 388 238 7 94 472 28 403 3.31e-53 185
Msa0719420 MtrunA17_Chr2g0299681 34.341 364 222 6 95 456 36 384 3.78e-53 185
Msa0719420 MtrunA17_Chr2g0297261 31.856 361 232 4 96 454 27 375 2.10e-52 183
Msa0719420 MtrunA17_Chr8g0342861 32.984 382 236 7 80 456 18 384 2.45e-51 180
Msa0719420 MtrunA17_Chr2g0329931 33.333 369 228 6 94 456 28 384 6.74e-51 179
Msa0719420 MtrunA17_Chr8g0347161 32.450 453 266 15 24 449 18 457 7.36e-51 182
Msa0719420 MtrunA17_Chr8g0347171 31.947 457 261 16 24 449 78 515 4.58e-49 179
Msa0719420 MtrunA17_Chr3g0114081 34.127 378 217 12 103 455 14 384 5.12e-49 178
Msa0719420 MtrunA17_Chr6g0466611 32.308 390 240 9 100 472 139 521 1.69e-47 176
Msa0719420 MtrunA17_Chr8g0347151 33.333 375 225 11 92 449 190 556 4.56e-45 168
Msa0719420 MtrunA17_Chr7g0263771 31.768 362 231 7 119 478 151 498 1.09e-44 166
Msa0719420 MtrunA17_Chr7g0236831 29.825 399 210 9 119 451 181 575 4.26e-42 160
Msa0719420 MtrunA17_Chr8g0386451 30.070 429 244 12 45 449 247 643 7.56e-42 159
Msa0719420 MtrunA17_Chr4g0003441 32.081 346 210 7 119 456 126 454 1.08e-40 153
Msa0719420 MtrunA17_Chr2g0307471 31.793 368 226 9 100 455 88 442 2.13e-40 153
Msa0719420 MtrunA17_Chr4g0062301 33.133 332 207 8 119 444 115 437 2.20e-40 154
Msa0719420 MtrunA17_Chr1g0179761 31.407 398 218 15 88 449 65 443 6.98e-40 150
Msa0719420 MtrunA17_Chr2g0309551 30.562 409 225 11 100 454 106 509 7.03e-39 149
Msa0719420 MtrunA17_Chr4g0029191 27.727 440 241 11 90 455 29 465 2.80e-37 145
Msa0719420 MtrunA17_Chr1g0149251 31.804 327 196 8 139 456 2 310 3.68e-37 140
Msa0719420 MtrunA17_Chr3g0145781 27.932 469 289 18 23 454 50 506 1.18e-36 142
Msa0719420 MtrunA17_Chr2g0301281 27.586 406 222 9 119 455 60 462 2.08e-36 142
Msa0719420 MtrunA17_Chr4g0034411 31.536 371 224 10 97 449 62 420 1.71e-35 141
Msa0719420 MtrunA17_Chr5g0443991 32.047 337 212 8 126 455 101 427 1.58e-34 138
Msa0719420 MtrunA17_Chr1g0192021 28.607 402 232 11 102 456 25 418 2.26e-32 130
Msa0719420 MtrunA17_Chr5g0429221 27.604 384 255 10 101 478 1 367 2.71e-30 122
Msa0719420 MtrunA17_Chr4g0074521 28.571 399 222 17 87 444 65 441 4.20e-25 108
Msa0719420 MtrunA17_Chr1g0169331 26.810 373 228 9 118 456 8 369 1.43e-24 105
Msa0719420 MtrunA17_Chr4g0039471 35.577 208 110 6 92 290 215 407 2.39e-24 105
Msa0719420 MtrunA17_Chr4g0039471 31.746 189 81 4 104 290 3 145 1.78e-15 78.6
Msa0719420 MtrunA17_Chr8g0349951 36.735 147 84 3 95 239 2 141 3.36e-20 87.4
Msa0719420 MtrunA17_Chr4g0058601 56.452 62 27 0 416 477 9 70 6.46e-20 85.5
Msa0719420 MtrunA17_Chr8g0354761 24.566 346 226 10 126 455 33 359 1.47e-19 91.3
Msa0719420 MtrunA17_Chr8g0342851 26.074 326 201 9 132 456 4 290 2.87e-19 89.0
Msa0719420 MtrunA17_Chr3g0137901 37.143 105 66 0 352 456 42 146 5.30e-19 84.7
Msa0719420 MtrunA17_Chr4g0062321 31.132 212 139 5 212 420 26 233 9.28e-18 82.8
Msa0719420 MtrunA17_Chr4g0025131 34.653 202 109 6 89 282 42 228 1.39e-16 80.5
Msa0719420 MtrunA17_Chr1g0171481 23.932 351 252 11 137 481 176 517 4.39e-16 80.9
Msa0719420 MtrunA17_Chr8g0377041 23.500 400 257 10 68 455 234 596 1.70e-15 79.7
Msa0719420 MtrunA17_Chr0c30g0494091 30.631 222 129 9 87 292 65 277 2.23e-14 75.1
Msa0719420 MtrunA17_Chr4g0025141 29.747 158 86 3 353 499 85 228 9.22e-14 71.2
Msa0719420 MtrunA17_Chr8g0364251 35.433 127 73 3 352 476 436 555 2.27e-13 72.8
Msa0719420 MtrunA17_Chr1g0155691 33.333 132 61 5 375 503 27 134 5.33e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719420 AT1G31970.1 77.397 438 98 1 86 522 100 537 0.0 717
Msa0719420 AT5G63120.2 48.284 408 199 6 76 481 143 540 3.37e-128 386
Msa0719420 AT1G55150.1 49.871 387 186 4 101 485 98 478 1.04e-125 377
Msa0719420 AT1G55150.2 49.871 387 186 4 101 485 123 503 9.93e-125 375
Msa0719420 AT5G14610.6 43.928 387 206 7 104 487 163 541 1.36e-102 322
Msa0719420 AT5G14610.2 43.928 387 206 7 104 487 163 541 1.59e-102 322
Msa0719420 AT5G14610.5 43.928 387 206 7 104 487 171 549 3.37e-102 321
Msa0719420 AT3G01540.1 42.894 387 210 7 104 487 160 538 9.67e-101 316
Msa0719420 AT3G01540.4 42.894 387 210 7 104 487 160 538 1.04e-100 316
Msa0719420 AT3G01540.2 42.894 387 210 7 104 487 160 538 1.04e-100 316
Msa0719420 AT3G01540.3 42.894 387 210 7 104 487 160 538 1.04e-100 316
Msa0719420 AT5G14610.7 44.032 377 202 6 112 487 42 410 4.23e-100 311
Msa0719420 AT5G14610.3 44.032 377 202 6 112 487 42 410 4.23e-100 311
Msa0719420 AT3G06480.1 44.750 400 204 8 86 481 423 809 2.37e-99 323
Msa0719420 AT5G14610.1 43.832 381 204 7 109 487 237 609 5.31e-98 312
Msa0719420 AT5G63120.1 45.029 342 176 6 76 415 143 474 6.58e-94 295
Msa0719420 AT5G63120.3 45.029 342 176 6 76 415 143 474 9.85e-94 294
Msa0719420 AT5G63120.4 45.029 342 176 6 76 415 143 474 9.85e-94 294
Msa0719420 AT5G63120.5 45.029 342 176 6 76 415 143 474 9.85e-94 294
Msa0719420 AT2G42520.2 41.966 417 222 7 83 486 144 553 9.38e-91 291
Msa0719420 AT2G42520.1 41.966 417 222 7 83 486 144 553 9.38e-91 291
Msa0719420 AT2G42520.3 41.966 417 222 7 83 486 144 553 9.38e-91 291
Msa0719420 AT1G20920.2 42.105 399 217 7 101 492 190 581 2.64e-90 294
Msa0719420 AT2G47330.1 42.494 393 215 7 93 481 219 604 3.84e-90 292
Msa0719420 AT3G58570.1 42.512 414 212 9 91 486 135 540 6.20e-90 289
Msa0719420 AT1G20920.4 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0719420 AT1G20920.6 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0719420 AT1G20920.3 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0719420 AT1G20920.7 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0719420 AT1G20920.5 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0719420 AT1G20920.1 42.105 399 217 7 101 492 528 919 4.17e-89 296
Msa0719420 AT3G58510.1 40.465 430 236 9 69 486 122 543 8.43e-88 282
Msa0719420 AT3G58510.3 40.465 430 236 9 69 486 122 543 8.43e-88 282
Msa0719420 AT3G58510.2 40.465 430 236 9 69 486 122 543 8.43e-88 282
Msa0719420 AT3G09620.1 40.415 386 189 8 101 481 395 744 4.76e-81 272
Msa0719420 AT3G09620.2 40.415 386 189 8 101 481 396 745 4.92e-81 272
Msa0719420 AT5G14610.4 42.090 335 183 7 104 435 171 497 8.32e-81 261
Msa0719420 AT5G51280.1 37.561 410 239 8 94 493 138 540 2.72e-79 259
Msa0719420 AT3G06480.2 42.274 343 181 8 86 424 423 752 1.01e-76 257
Msa0719420 AT3G22330.1 41.108 343 193 6 116 457 120 454 1.13e-76 253
Msa0719420 AT4G33370.1 37.288 413 236 9 94 493 89 491 9.41e-76 249
Msa0719420 AT3G22310.2 40.974 349 195 7 106 451 120 460 1.18e-75 250
Msa0719420 AT3G22310.1 40.974 349 195 7 106 451 120 460 1.65e-75 250
Msa0719420 AT2G33730.1 36.207 406 227 6 101 483 312 708 2.63e-71 241
Msa0719420 AT5G26742.1 39.496 357 205 7 109 460 109 459 1.70e-66 229
Msa0719420 AT5G26742.2 39.496 357 205 7 109 460 109 459 1.73e-66 229
Msa0719420 AT5G60990.1 36.264 364 220 6 95 451 2 360 3.13e-66 221
Msa0719420 AT5G26742.3 40.729 329 186 6 135 460 44 366 2.75e-65 224
Msa0719420 AT1G28180.1 37.465 355 214 4 130 483 3 350 1.38e-63 212
Msa0719420 AT5G62190.1 38.012 342 201 6 119 455 115 450 7.87e-62 215
Msa0719420 AT1G16280.1 35.537 363 219 5 99 456 55 407 3.04e-60 206
Msa0719420 AT4G00660.1 34.332 367 221 7 96 457 123 474 1.28e-59 205
Msa0719420 AT4G00660.2 34.332 367 221 7 96 457 123 474 1.28e-59 205
Msa0719420 AT2G45810.1 33.607 366 225 5 96 457 146 497 7.37e-58 201
Msa0719420 AT3G61240.2 31.477 413 256 6 52 457 75 467 1.46e-57 199
Msa0719420 AT3G61240.1 31.477 413 256 6 52 457 75 467 1.46e-57 199
Msa0719420 AT4G16630.1 34.959 369 216 8 104 462 169 523 2.28e-57 204
Msa0719420 AT3G02065.3 32.250 400 255 6 101 491 109 501 5.64e-55 192
Msa0719420 AT3G02065.2 32.250 400 255 6 101 491 109 501 5.64e-55 192
Msa0719420 AT1G77030.1 35.180 361 212 8 104 456 30 376 5.79e-54 196
Msa0719420 AT3G19760.1 32.584 356 226 5 101 454 34 377 1.53e-52 184
Msa0719420 AT3G13920.4 33.515 367 225 6 95 457 28 379 2.59e-52 183
Msa0719420 AT1G72730.1 33.621 348 219 4 119 466 60 395 1.02e-51 182
Msa0719420 AT3G13920.1 33.333 369 228 6 95 457 28 384 1.19e-51 181
Msa0719420 AT3G13920.3 33.424 368 227 6 95 456 18 373 1.25e-51 181
Msa0719420 AT1G54270.2 33.607 366 224 6 95 456 28 378 1.83e-51 181
Msa0719420 AT3G13920.2 33.333 369 228 6 95 457 28 384 3.23e-51 180
Msa0719420 AT3G13920.5 33.333 369 228 6 95 457 32 388 3.61e-51 180
Msa0719420 AT1G51380.1 31.742 356 229 5 101 454 21 364 4.15e-51 179
Msa0719420 AT1G54270.1 33.424 368 227 6 95 456 28 383 9.29e-51 179
Msa0719420 AT3G02065.1 31.892 370 238 5 129 491 2 364 1.09e-49 175
Msa0719420 AT3G09720.2 29.087 471 284 12 23 482 80 511 1.69e-48 176
Msa0719420 AT3G09720.1 29.087 471 284 12 23 482 80 511 1.69e-48 176
Msa0719420 AT4G09730.1 31.186 388 243 9 101 471 111 491 3.93e-48 176
Msa0719420 AT5G08610.1 33.333 372 221 10 96 449 376 738 2.48e-45 171
Msa0719420 AT1G71370.1 32.337 368 231 10 100 455 12 373 7.15e-45 166
Msa0719420 AT5G65900.1 32.133 361 231 8 102 456 154 506 3.94e-44 165
Msa0719420 AT5G63630.1 31.892 370 238 7 91 449 44 410 7.42e-44 163
Msa0719420 AT5G05450.1 33.048 351 216 8 120 455 36 382 9.37e-44 164
Msa0719420 AT5G08620.1 31.436 404 258 10 59 449 39 436 2.76e-43 162
Msa0719420 AT5G63630.2 31.892 370 238 7 91 449 238 604 2.92e-43 164
Msa0719420 AT5G11170.1 32.448 339 214 7 119 454 65 391 3.54e-42 156
Msa0719420 AT5G11200.1 32.448 339 214 7 119 454 65 391 3.54e-42 156
Msa0719420 AT3G18600.1 33.333 336 213 6 119 451 108 435 5.40e-41 155
Msa0719420 AT1G63250.1 32.425 367 233 9 95 449 322 685 3.09e-39 152
Msa0719420 AT3G53110.1 31.510 384 230 13 92 455 81 451 1.29e-38 148
Msa0719420 AT3G16840.2 28.535 396 216 9 120 451 211 603 2.09e-38 150
Msa0719420 AT3G16840.1 28.535 396 216 9 120 451 210 602 2.21e-38 150
Msa0719420 AT2G07750.1 32.425 367 233 9 95 449 369 732 2.99e-38 150
Msa0719420 AT5G11170.2 31.975 319 202 7 139 454 2 308 6.34e-37 140
Msa0719420 AT1G12770.2 27.861 402 242 9 100 453 108 509 1.62e-36 142
Msa0719420 AT1G12770.1 27.861 402 242 9 100 453 108 509 1.62e-36 142
Msa0719420 AT5G54910.1 30.529 416 265 12 97 504 66 465 2.28e-36 144
Msa0719420 AT5G11200.3 29.024 379 215 7 119 454 65 432 1.19e-35 139
Msa0719420 AT2G40700.1 28.117 409 218 12 119 455 50 454 3.93e-34 136
Msa0719420 AT3G06980.1 28.329 413 246 16 91 467 363 761 5.45e-34 137
Msa0719420 AT4G34910.1 28.900 391 229 8 100 445 44 430 1.19e-33 135
Msa0719420 AT1G71280.2 32.075 318 178 10 109 419 24 310 1.13e-31 125
Msa0719420 AT1G71280.1 31.348 319 181 9 109 420 24 311 4.00e-31 126
Msa0719420 AT1G51380.2 30.116 259 167 5 101 357 21 267 3.09e-28 114
Msa0719420 AT5G19210.2 29.759 373 204 15 109 444 83 434 1.55e-27 115
Msa0719420 AT1G51380.4 31.818 220 139 4 101 318 21 231 3.17e-27 112
Msa0719420 AT1G51380.3 31.818 220 139 4 101 318 21 231 5.31e-27 111
Msa0719420 AT4G15850.1 25.707 389 203 12 138 457 73 444 1.01e-23 105
Msa0719420 AT2G28600.1 26.923 312 208 8 174 479 194 491 3.65e-19 90.9
Msa0719420 AT5G11200.2 29.091 220 141 4 237 454 244 450 4.57e-19 90.5
Msa0719420 AT5G11200.2 32.447 188 116 5 119 303 65 244 4.41e-15 78.2
Msa0719420 AT1G28180.2 38.053 113 70 0 130 242 3 115 2.01e-18 81.6
Msa0719420 AT5G19210.1 28.030 264 165 8 201 444 19 277 8.06e-16 79.0
Msa0719420 AT5G19210.3 28.030 264 165 8 201 444 19 277 8.06e-16 79.0
Msa0719420 AT1G27880.1 22.822 482 303 12 25 494 201 625 8.56e-14 74.7
Msa0719420 AT1G27880.2 22.822 482 303 12 25 494 201 625 1.08e-13 74.3
Msa0719420 AT1G59990.1 32.231 121 77 2 353 473 426 541 1.66e-11 67.0
Msa0719420 AT1G59990.2 32.231 121 77 2 353 473 426 541 1.75e-11 67.0

Find 138 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTAGCTCAGGAATTTA+TGG 0.153581 5_1:-14696629 Msa0719420:CDS
ACCATGTATCGGCTTGTAAT+TGG 0.198915 5_1:-14694790 Msa0719420:three_prime_UTR
GAAGATTATGTTCATAGAAT+TGG 0.238610 5_1:-14695458 Msa0719420:CDS
TGGCACACATGTTAAGAAAA+AGG 0.253159 5_1:-14695175 Msa0719420:intron
GAATTAGTGAGGAAAGAAAT+AGG 0.254501 5_1:-14694596 Msa0719420:three_prime_UTR
ATATAGGAGTCCAAGCTTTA+TGG 0.255279 5_1:-14695040 Msa0719420:intron
CGTTATTTATTTCTTCAAAA+AGG 0.256113 5_1:-14694866 Msa0719420:three_prime_UTR
GGTGAAGAGGTTTGAGGATT+CGG 0.263054 5_1:-14699984 Msa0719420:CDS
GTGAAGAGGTTTGAGGATTC+GGG 0.272367 5_1:-14699983 Msa0719420:CDS
GGAATATTTCAGGGACTTGC+TGG 0.276066 5_1:-14695258 Msa0719420:intron
TGCGAGCCATGGTAGGAAAA+TGG 0.299824 5_1:+14700296 None:intergenic
CTAGGGAAGACACTTGCTTT+TGG 0.301902 5_1:-14698865 Msa0719420:intron
GTGGAATCAGTTTGTTTGTA+TGG 0.320024 5_1:-14697532 Msa0719420:CDS
ATTCTTCACACATTTGAATA+AGG 0.322677 5_1:-14695396 Msa0719420:intron
TTTATCCAGGATATTGTCAT+TGG 0.336374 5_1:-14697308 Msa0719420:intron
ACATAATCTTCTAGAGTTAG+AGG 0.337678 5_1:+14695470 None:intergenic
TATTCAAGATCTGGTTGAAA+TGG 0.345946 5_1:-14697273 Msa0719420:CDS
GAGTTCTGTGTTGTTGTTAA+GGG 0.348271 5_1:+14700237 None:intergenic
TTGATTGGAATTGCGGCAAC+TGG 0.349586 5_1:-14699866 Msa0719420:CDS
TATAGGAGTCCAAGCTTTAT+GGG 0.366000 5_1:-14695039 Msa0719420:intron
CCACAAAAGATACTTCTTGT+AGG 0.370133 5_1:+14697240 None:intergenic
ATACTTGGTCAGACATGTTC+TGG 0.373447 5_1:-14696850 Msa0719420:intron
CCCACTACTATACCCTAAAT+AGG 0.380591 5_1:-14700411 Msa0719420:five_prime_UTR
AAGATTATGTTCATAGAATT+GGG 0.393407 5_1:-14695457 Msa0719420:CDS
TGAGTTCTGTGTTGTTGTTA+AGG 0.400441 5_1:+14700236 None:intergenic
AGTGATTTGTGGTTGTTTGT+TGG 0.401420 5_1:+14697504 None:intergenic
GGAATTGCGGCAACTGGGTC+AGG 0.401748 5_1:-14699860 Msa0719420:intron
CAAATAGTCCGCTCTATACT+TGG 0.405601 5_1:-14696865 Msa0719420:CDS
AGAAAAGTAAGAAGAAGAAA+AGG 0.406019 5_1:-14700111 Msa0719420:CDS
GTTAAGGGTTTGTTCGGGTT+CGG 0.406061 5_1:+14700252 None:intergenic
TGGTGGTGATGTGTCGGTTT+CGG 0.407891 5_1:-14700065 Msa0719420:CDS
TTCTTTCCAGTCACTGCAAT+CGG 0.408176 5_1:+14700031 None:intergenic
CCATGTATCGGCTTGTAATT+GGG 0.408424 5_1:-14694789 Msa0719420:three_prime_UTR
CTCCGATTCAATCACGTGCT+TGG 0.415933 5_1:-14699913 Msa0719420:CDS
GTTGTTGTTAAGGGTTTGTT+CGG 0.416732 5_1:+14700246 None:intergenic
GCTTTATGGGGCTCACTTCA+AGG 0.417352 5_1:-14695026 Msa0719420:CDS
TTAGACTTTGGAGCATCAAC+AGG 0.417852 5_1:+14694998 None:intergenic
TATTTGCATGACATCATGAT+TGG 0.425052 5_1:+14696491 None:intergenic
TTGATCACTACTTCAACATC+TGG 0.425118 5_1:+14695503 None:intergenic
TCAAATGTGTGAAGAATGTA+TGG 0.428680 5_1:+14695402 None:intergenic
CCAAATTTCAAAAGATCGTC+TGG 0.430831 5_1:+14695195 None:intergenic
GAAAACTTAAAATCATACAT+AGG 0.431801 5_1:+14694707 None:intergenic
AATTAGTGAGGAAAGAAATA+GGG 0.433180 5_1:-14694595 Msa0719420:three_prime_UTR
AACTTGTGACAGGTTGTTGT+AGG 0.435320 5_1:-14696531 Msa0719420:intron
AAAACTTAAAATCATACATA+GGG 0.437566 5_1:+14694708 None:intergenic
GTTCATAGAATTGGGCGGAC+TGG 0.441574 5_1:-14695449 Msa0719420:CDS
GAATGGAAGCTGTCCTTTGA+TGG 0.441746 5_1:-14696022 Msa0719420:intron
CAAATCACTGCACTAAAATC+TGG 0.442805 5_1:-14697490 Msa0719420:CDS
CCCTCGTAGGAGAGAGCATA+AGG 0.444894 5_1:+14698770 None:intergenic
CTTTCTCAGGAATCGAGTAT+TGG 0.445276 5_1:-14696312 Msa0719420:intron
CCCAATTACAAGCCGATACA+TGG 0.448445 5_1:+14694789 None:intergenic
TTGGATGGTCGTGATTTGAT+TGG 0.453523 5_1:-14699881 Msa0719420:CDS
CATGCAAATAGTTGAGGTAT+TGG 0.459321 5_1:-14696478 Msa0719420:CDS
TGATGTGGCTGCACGAGGAT+TGG 0.459395 5_1:-14695531 Msa0719420:CDS
TCCCGGTCGTATTCAAGATC+TGG 0.466067 5_1:-14697282 Msa0719420:CDS
TTCGGGTTCGGTGGATAAAA+CGG 0.468205 5_1:+14700264 None:intergenic
GAAGAAAAGGCACAACAAAT+CGG 0.473180 5_1:-14700098 Msa0719420:CDS
GAATATTTCAGGGACTTGCT+GGG 0.474454 5_1:-14695257 Msa0719420:intron
AACCAGATCTTGAATACGAC+CGG 0.475620 5_1:+14697280 None:intergenic
CCTTATGCTCTCTCCTACGA+GGG 0.480938 5_1:-14698770 Msa0719420:CDS
GCACTATCATTATTCAAGAA+TGG 0.480956 5_1:-14696039 Msa0719420:CDS
GAATGTGCTTGAGTGTTGTA+AGG 0.481590 5_1:-14699951 Msa0719420:CDS
CAACACTCAAGCACATTCTC+AGG 0.482405 5_1:+14699956 None:intergenic
ATTCAAGATCTGGTTGAAAT+GGG 0.496635 5_1:-14697272 Msa0719420:CDS
CGCCGTGTATTTCTCATCTC+CGG 0.502457 5_1:+14700006 None:intergenic
TTCATAACATGCATAATAGC+TGG 0.502973 5_1:+14698838 None:intergenic
TGATGATGAAGACTAAATAC+TGG 0.503492 5_1:-14694954 Msa0719420:exon
ATAAAATAGCATACCATCAA+AGG 0.505839 5_1:+14696009 None:intergenic
AAAGAAATAGGGTGAAATGT+AGG 0.506658 5_1:-14694584 Msa0719420:three_prime_UTR
AGCAGTTCATCACTTAGCTC+AGG 0.508831 5_1:-14696638 Msa0719420:CDS
TGATGTGTCGGTTTCGGCGT+CGG 0.516818 5_1:-14700059 Msa0719420:CDS
GCAAAGAGGATTCCGACCCT+TGG 0.519670 5_1:+14698792 None:intergenic
GATGAACCGATTGCAGTGAC+TGG 0.523535 5_1:-14700037 Msa0719420:CDS
ACTGGACGAGCTGGTAAGAA+AGG 0.524323 5_1:-14695431 Msa0719420:CDS
TCCTATTTAGGGTATAGTAG+TGG 0.525758 5_1:+14700410 None:intergenic
TTGTTGTTAAGGGTTTGTTC+GGG 0.528332 5_1:+14700247 None:intergenic
GTTGGATGAATATTTGAAAG+TGG 0.546670 5_1:-14694912 Msa0719420:three_prime_UTR
AGCAGATCGGATGCTTGACA+TGG 0.547306 5_1:-14696896 Msa0719420:CDS
GGCCAAGCACGTGATTGAAT+CGG 0.548949 5_1:+14699911 None:intergenic
CACGGCGGTGAAGAGGTTTG+AGG 0.550986 5_1:-14699990 Msa0719420:CDS
GAAGAGCAAGGGTTCTTCCA+AGG 0.552135 5_1:-14698809 Msa0719420:CDS
TGTACAAATGGGAAACCACA+CGG 0.557076 5_1:-14696280 Msa0719420:CDS
ATGAATAAGCGGAAGAGCAA+GGG 0.557187 5_1:-14698820 Msa0719420:CDS
ATTGGGCGGACTGGACGAGC+TGG 0.562548 5_1:-14695440 Msa0719420:CDS
CCTATTTAGGGTATAGTAGT+GGG 0.564824 5_1:+14700411 None:intergenic
GAAGTGAGCCCCATAAAGCT+TGG 0.565873 5_1:+14695030 None:intergenic
TCAGATGTATTGTGTGATGC+TGG 0.566166 5_1:-14697568 Msa0719420:CDS
GCAGTGACTGGAAAGAATGC+CGG 0.570492 5_1:-14700025 Msa0719420:CDS
TGGTTATGTTCAGTGCTACA+TGG 0.571493 5_1:-14696666 Msa0719420:CDS
AAGGGTTTGTTCGGGTTCGG+TGG 0.571612 5_1:+14700255 None:intergenic
GAATCAGTTTGTTTGTATGG+TGG 0.575683 5_1:-14697529 Msa0719420:CDS
GATATTGTCATTGGAACTCC+CGG 0.581051 5_1:-14697299 Msa0719420:CDS
CCATGGTAGGAAAATGGTGA+TGG 0.581323 5_1:+14700302 None:intergenic
AGAAATACACGGCGGTGAAG+AGG 0.583314 5_1:-14699997 Msa0719420:CDS
GCCTTATGCTCTCTCCTACG+AGG 0.583509 5_1:-14698771 Msa0719420:CDS
TGGAAAGCAGTGTCTATAAG+TGG 0.585177 5_1:-14696090 Msa0719420:CDS
GCACGTGATTGAATCGGAGA+AGG 0.586015 5_1:+14699917 None:intergenic
TCGTGATTTGATTGGAATTG+CGG 0.593562 5_1:-14699873 Msa0719420:CDS
GCATCCGATCTGCTTCATCA+AGG 0.595521 5_1:+14696905 None:intergenic
AATATTTCAGGGACTTGCTG+GGG 0.596100 5_1:-14695256 Msa0719420:intron
TGATTGGAATTGCGGCAACT+GGG 0.600555 5_1:-14699865 Msa0719420:CDS
TGTGATGCTGGTAAATCTTG+TGG 0.600721 5_1:-14697556 Msa0719420:CDS
AAGAGCAAGGGTTCTTCCAA+GGG 0.602731 5_1:-14698808 Msa0719420:CDS
TGATGTCATGCAAATAGTTG+AGG 0.605250 5_1:-14696484 Msa0719420:CDS
GAGGCGAAAAGCTGAAGAGA+TGG 0.606515 5_1:+14700345 None:intergenic
TATGAATAAGCGGAAGAGCA+AGG 0.607867 5_1:-14698821 Msa0719420:CDS
GCTAAGTGATGAACTGCTAA+CGG 0.609098 5_1:+14696643 None:intergenic
GCTACTGATGTGGCTGCACG+AGG 0.611530 5_1:-14695536 Msa0719420:CDS
GTACAAATGGGAAACCACAC+GGG 0.611553 5_1:-14696279 Msa0719420:CDS
AATGTGCTTGAGTGTTGTAA+GGG 0.615083 5_1:-14699950 Msa0719420:CDS
GCAAGGGTTCTTCCAAGGGT+CGG 0.615294 5_1:-14698804 Msa0719420:CDS
TTATGCATGTTATGAATAAG+CGG 0.617150 5_1:-14698831 Msa0719420:CDS
GTGGAGAAAATGCTTCAACA+AGG 0.622499 5_1:-14696257 Msa0719420:CDS
AGGTCCTTGATGAAGCAGAT+CGG 0.623442 5_1:-14696909 Msa0719420:CDS
TGCTGGTAAATCTTGTGGTG+TGG 0.625650 5_1:-14697551 Msa0719420:CDS
TGGAGAAAATGCTTCAACAA+GGG 0.625673 5_1:-14696256 Msa0719420:intron
ACAGGTTGTTGTAGGCTCAG+AGG 0.629287 5_1:-14696523 Msa0719420:intron
TGGGCAGATTGCTACTGATG+TGG 0.630709 5_1:-14695546 Msa0719420:intron
AAGTAATGGTGGTGATGTGT+CGG 0.630767 5_1:-14700071 Msa0719420:CDS
GGAGAGAGCATAAGGCAAAG+AGG 0.632906 5_1:+14698778 None:intergenic
TTTCATCTAAACAAAGGACA+AGG 0.633550 5_1:+14694621 None:intergenic
GCAGATCGGATGCTTGACAT+GGG 0.636956 5_1:-14696895 Msa0719420:CDS
GAAAAGGCACAACAAATCGG+AGG 0.638376 5_1:-14700095 Msa0719420:CDS
AACAAATCGGAGGAAAGTAA+TGG 0.643585 5_1:-14700085 Msa0719420:CDS
TGTTGAGCTAGCTCCCTCGT+AGG 0.646096 5_1:+14698757 None:intergenic
AGTGAAGCAGCTCGAACCAG+AGG 0.649135 5_1:+14700326 None:intergenic
ATAGGAGTCCAAGCTTTATG+GGG 0.655015 5_1:-14695038 Msa0719420:intron
ACCAGATCTTGAATACGACC+GGG 0.658494 5_1:+14697281 None:intergenic
AAATCGGAGGAAAGTAATGG+TGG 0.659280 5_1:-14700082 Msa0719420:CDS
CAAATGGGAAACCACACGGG+TGG 0.659561 5_1:-14696276 Msa0719420:CDS
TGAAGAGGTTTGAGGATTCG+GGG 0.659903 5_1:-14699982 Msa0719420:CDS
AAACTTAAAATCATACATAG+GGG 0.674503 5_1:+14694709 None:intergenic
ATCACAGCATGAGCGCACAA+AGG 0.688375 5_1:-14696061 Msa0719420:CDS
CAAATGTGTGAAGAATGTAT+GGG 0.699602 5_1:+14695403 None:intergenic
TGCCGGAGATGAGAAATACA+CGG 0.715333 5_1:-14700008 Msa0719420:CDS
ATGTCTGACCAAGTATAGAG+CGG 0.717626 5_1:+14696857 None:intergenic
ATTATGTTCATAGAATTGGG+CGG 0.720125 5_1:-14695454 Msa0719420:CDS
CGGAGATGAGAAATACACGG+CGG 0.831076 5_1:-14700005 Msa0719420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATCTTTAGTATT+AGG - chr5_1:14695274-14695293 Msa0719420:intron 10.0%
!! AATATTAATCTTTAGTATTA+GGG - chr5_1:14695275-14695294 Msa0719420:intron 10.0%
!! AAAAAAAAACTAAAATACAA+GGG + chr5_1:14696648-14696667 None:intergenic 10.0%
!! AAAAAAAAAACTAAAATACA+AGG + chr5_1:14696649-14696668 None:intergenic 10.0%
!! AATTTAATTGTCTATAAAAT+AGG + chr5_1:14697639-14697658 None:intergenic 10.0%
!!! TTCAATGAATATATTTTATT+TGG - chr5_1:14697824-14697843 Msa0719420:intron 10.0%
!! ATAATATAATAATATATACC+TGG - chr5_1:14698798-14698817 Msa0719420:CDS 10.0%
!!! TAGAGATTTTATGATTTTTA+GGG + chr5_1:14694622-14694641 None:intergenic 15.0%
!!! ATAGAGATTTTATGATTTTT+AGG + chr5_1:14694623-14694642 None:intergenic 15.0%
!!! TGTAACTTTATTTTATCTTT+TGG + chr5_1:14695487-14695506 None:intergenic 15.0%
!!! ACGTTTAATTTTTATTTGTT+TGG - chr5_1:14696346-14696365 Msa0719420:intron 15.0%
!!! ATGAATATATTTTATTTGGT+TGG - chr5_1:14697828-14697847 Msa0719420:intron 15.0%
!! CTTATATATAACAGAAATAA+AGG + chr5_1:14699672-14699691 None:intergenic 15.0%
!!! TTATTTCTGTTATATATAAG+TGG - chr5_1:14699672-14699691 Msa0719420:intron 15.0%
!!! AATGTTATTTTTTTAGACTT+TGG + chr5_1:14700007-14700026 None:intergenic 15.0%
!! AAAACTTAAAATCATACATA+GGG + chr5_1:14700285-14700304 None:intergenic 15.0%
!! ATGTGTTTGTATTATTGAAA+TGG - chr5_1:14695177-14695196 Msa0719420:CDS 20.0%
!! TATTATTGAAATGGTTGAAT+TGG - chr5_1:14695186-14695205 Msa0719420:CDS 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr5_1:14695823-14695842 Msa0719420:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr5_1:14695824-14695843 Msa0719420:intron 20.0%
!!! TATCTTTTCTTTTTGTAACT+AGG - chr5_1:14696107-14696126 Msa0719420:intron 20.0%
!!! ATCTTTTCTTTTTGTAACTA+GGG - chr5_1:14696108-14696127 Msa0719420:intron 20.0%
!! ATAATAATATCCAAAGAGAA+AGG + chr5_1:14696443-14696462 None:intergenic 20.0%
!!! TTTAAACAAAGGGTTAATTT+TGG - chr5_1:14696675-14696694 Msa0719420:CDS 20.0%
!!! ACTTTTTTTTTCTTTCATAG+TGG - chr5_1:14696753-14696772 Msa0719420:intron 20.0%
!! TAAGTTAAAACAATGTAATG+AGG + chr5_1:14697079-14697098 None:intergenic 20.0%
!! TAATTGTCTATAAAATAGGA+CGG + chr5_1:14697635-14697654 None:intergenic 20.0%
!! ATAAGTTAAATAATGTCTTC+AGG - chr5_1:14698874-14698893 Msa0719420:intron 20.0%
!! TAAGTTAAATAATGTCTTCA+GGG - chr5_1:14698875-14698894 Msa0719420:intron 20.0%
!! AAAATAACAATTATCCAACA+TGG + chr5_1:14699120-14699139 None:intergenic 20.0%
!!! TATTTGTTTTCTCAATCTAA+TGG - chr5_1:14699424-14699443 Msa0719420:intron 20.0%
!!! ATTTGTTTTCTCAATCTAAT+GGG - chr5_1:14699425-14699444 Msa0719420:intron 20.0%
!! AAGATTATGTTCATAGAATT+GGG - chr5_1:14699533-14699552 Msa0719420:intron 20.0%
!! TAATATATTCAGAAGAGAAT+CGG + chr5_1:14699627-14699646 None:intergenic 20.0%
!! ATAACTTTCTGCTTTAATAT+AGG - chr5_1:14699934-14699953 Msa0719420:CDS 20.0%
!!! CGTTATTTATTTCTTCAAAA+AGG - chr5_1:14700124-14700143 Msa0719420:CDS 20.0%
!! TCAAAAAGGAAATAAGATAA+TGG - chr5_1:14700138-14700157 Msa0719420:CDS 20.0%
!! AAACTTAAAATCATACATAG+GGG + chr5_1:14700284-14700303 None:intergenic 20.0%
!! GAAAACTTAAAATCATACAT+AGG + chr5_1:14700286-14700305 None:intergenic 20.0%
!!! TAAGTTTTCAAAAACATTTG+AGG - chr5_1:14700297-14700316 Msa0719420:exon 20.0%
!!! ATTCTTTTTCATCTAAACAA+AGG + chr5_1:14700378-14700397 None:intergenic 20.0%
! AGAAAAGTAAGAAGAAGAAA+AGG - chr5_1:14694879-14694898 Msa0719420:three_prime_UTR 25.0%
! TGAAGTTATTTATCCAAACA+GGG + chr5_1:14695434-14695453 None:intergenic 25.0%
! ATGAAGTTATTTATCCAAAC+AGG + chr5_1:14695435-14695454 None:intergenic 25.0%
!!! CTTGTTTTCATAATCTATCT+TGG - chr5_1:14695528-14695547 Msa0719420:CDS 25.0%
! TCAAATAAACCAATCCAAAT+AGG - chr5_1:14695659-14695678 Msa0719420:intron 25.0%
! ATATTTAGAAATCCACACTT+AGG + chr5_1:14696090-14696109 None:intergenic 25.0%
! TTATGCATGTTATGAATAAG+CGG - chr5_1:14696159-14696178 Msa0719420:intron 25.0%
!!! AGTGGAAAATTGTTTTTGAT+TGG - chr5_1:14696519-14696538 Msa0719420:CDS 25.0%
!!! GTGGAAAATTGTTTTTGATT+GGG - chr5_1:14696520-14696539 Msa0719420:CDS 25.0%
!! AATGAGTTGGAAATTGTTAA+GGG - chr5_1:14696559-14696578 Msa0719420:intron 25.0%
! CCACGAACAAAAAAAATATT+TGG + chr5_1:14696884-14696903 None:intergenic 25.0%
!!! CCAAATATTTTTTTTGTTCG+TGG - chr5_1:14696881-14696900 Msa0719420:CDS 25.0%
!!! TTTTGGTTATAACATTCCAT+TGG + chr5_1:14697120-14697139 None:intergenic 25.0%
! GGAATGTTATAACCAAAATT+TGG - chr5_1:14697122-14697141 Msa0719420:intron 25.0%
!! AAATATCTGCAACCAAATTT+TGG + chr5_1:14697137-14697156 None:intergenic 25.0%
!!! TTTTGATAGTACCTGTAAAT+TGG - chr5_1:14697181-14697200 Msa0719420:intron 25.0%
!! TTTGATAGTACCTGTAAATT+GGG - chr5_1:14697182-14697201 Msa0719420:intron 25.0%
!!! ATACAGTAGAATGTTATTTC+TGG - chr5_1:14697254-14697273 Msa0719420:CDS 25.0%
!! TCATTTGGTGAATCAATAAA+TGG + chr5_1:14697313-14697332 None:intergenic 25.0%
! AGAAAAAAGCTCCATAAATA+TGG + chr5_1:14697610-14697629 None:intergenic 25.0%
! CAATATCCTGGATAAAAAAA+AGG + chr5_1:14697678-14697697 None:intergenic 25.0%
! AAATTCAGTAGAAATGCAAA+TGG + chr5_1:14697925-14697944 None:intergenic 25.0%
! AGTGAAACAAAAAATAAGCT+GGG + chr5_1:14698272-14698291 None:intergenic 25.0%
!! TGAAGATACATACTTTTACA+GGG + chr5_1:14698394-14698413 None:intergenic 25.0%
!! ATGAAGATACATACTTTTAC+AGG + chr5_1:14698395-14698414 None:intergenic 25.0%
! AAGATATTTAAACTTGTGAC+AGG - chr5_1:14698449-14698468 Msa0719420:intron 25.0%
!!! TACAAGATTTTAGCAAAAAG+AGG + chr5_1:14698657-14698676 None:intergenic 25.0%
! TAAAATCTTGTATCTTTCTC+AGG - chr5_1:14698665-14698684 Msa0719420:intron 25.0%
!!! TGGTTTTTGTTTTGTACAAA+TGG - chr5_1:14698698-14698717 Msa0719420:intron 25.0%
!!! GGTTTTTGTTTTGTACAAAT+GGG - chr5_1:14698699-14698718 Msa0719420:intron 25.0%
! AAGTTAAATAATGTCTTCAG+GGG - chr5_1:14698876-14698895 Msa0719420:intron 25.0%
! ATAAAATAGCATACCATCAA+AGG + chr5_1:14698984-14699003 None:intergenic 25.0%
!! GAAAACAATCAAAAGTTGAT+GGG + chr5_1:14699082-14699101 None:intergenic 25.0%
! AGAAAACAATCAAAAGTTGA+TGG + chr5_1:14699083-14699102 None:intergenic 25.0%
! ATAAAAAACATCATCTTAGG+AGG + chr5_1:14699192-14699211 None:intergenic 25.0%
! TGGATAAAAAACATCATCTT+AGG + chr5_1:14699195-14699214 None:intergenic 25.0%
! GTAAAGCTATAACTTCAAAA+GGG + chr5_1:14699243-14699262 None:intergenic 25.0%
! TGTAAAGCTATAACTTCAAA+AGG + chr5_1:14699244-14699263 None:intergenic 25.0%
! GAAGATTATGTTCATAGAAT+TGG - chr5_1:14699532-14699551 Msa0719420:intron 25.0%
! ATTCTTCACACATTTGAATA+AGG - chr5_1:14699594-14699613 Msa0719420:intron 25.0%
! ATAACAGAAATAAAGGACAA+AGG + chr5_1:14699665-14699684 None:intergenic 25.0%
!!! TGGTGACTTACATTTATTTT+TGG - chr5_1:14700056-14700075 Msa0719420:CDS 25.0%
!!! GACTTACATTTATTTTTGGT+TGG - chr5_1:14700060-14700079 Msa0719420:CDS 25.0%
!!! ATTTTTGTTGTACCATGTAT+CGG - chr5_1:14700189-14700208 Msa0719420:CDS 25.0%
! TAGATGAAAAAGAATTAGTG+AGG - chr5_1:14700383-14700402 Msa0719420:five_prime_UTR 25.0%
! AATTAGTGAGGAAAGAAATA+GGG - chr5_1:14700395-14700414 Msa0719420:five_prime_UTR 25.0%
!! ACTTTTGACTCTCCTATTTA+GGG + chr5_1:14694594-14694613 None:intergenic 30.0%
!! CTTACTTTTCTTCTCTGATT+CGG + chr5_1:14694870-14694889 None:intergenic 30.0%
TGAAAACAGCATATGAACAT+GGG + chr5_1:14695685-14695704 None:intergenic 30.0%
!! AGTTTTATATCTCTAAACCG+AGG + chr5_1:14695850-14695869 None:intergenic 30.0%
TTCATAACATGCATAATAGC+TGG + chr5_1:14696155-14696174 None:intergenic 30.0%
TAGCAATATTGCATCATGTA+TGG - chr5_1:14696381-14696400 Msa0719420:intron 30.0%
ATCCTTTACTTCTATGAACT+TGG - chr5_1:14696417-14696436 Msa0719420:CDS 30.0%
!!! TGAAACATCTAGCTTTTGAT+TGG - chr5_1:14696475-14696494 Msa0719420:CDS 30.0%
!!! GAAACATCTAGCTTTTGATT+GGG - chr5_1:14696476-14696495 Msa0719420:CDS 30.0%
! GAATGAGTTGGAAATTGTTA+AGG - chr5_1:14696558-14696577 Msa0719420:intron 30.0%
AATTTCCCACTCATAATATC+AGG + chr5_1:14696587-14696606 None:intergenic 30.0%
GTAGGAATGAAAATTGGAAA+GGG - chr5_1:14696706-14696725 Msa0719420:intron 30.0%
TAGGAATGAAAATTGGAAAG+GGG - chr5_1:14696707-14696726 Msa0719420:intron 30.0%
AAAATTGGAAAGGGGAAAAT+GGG - chr5_1:14696715-14696734 Msa0719420:intron 30.0%
!!! TTTTTTCTTTCATAGTGGCA+TGG - chr5_1:14696758-14696777 Msa0719420:intron 30.0%
!!! TTTTTTTGTTCGTGGATAAC+TGG - chr5_1:14696889-14696908 Msa0719420:CDS 30.0%
! AAAGCAACCTTTTGTATCAA+GGG + chr5_1:14696948-14696967 None:intergenic 30.0%
! AAAAGCAACCTTTTGTATCA+AGG + chr5_1:14696949-14696968 None:intergenic 30.0%
AATTGTAGAACCCAATTTAC+AGG + chr5_1:14697195-14697214 None:intergenic 30.0%
AAAGTAACATCCTCTCTATT+GGG + chr5_1:14697229-14697248 None:intergenic 30.0%
AAAAGTAACATCCTCTCTAT+TGG + chr5_1:14697230-14697249 None:intergenic 30.0%
ACTGTCTTAAATTTCCAACT+GGG - chr5_1:14697279-14697298 Msa0719420:CDS 30.0%
! CACAGCTACATTTTATCATT+TGG + chr5_1:14697328-14697347 None:intergenic 30.0%
ATACAAACCAACAAAAGGAA+AGG + chr5_1:14697548-14697567 None:intergenic 30.0%
ACAGAATACAAACCAACAAA+AGG + chr5_1:14697553-14697572 None:intergenic 30.0%
ATTCTGTCAGATACAAGTTA+TGG - chr5_1:14697566-14697585 Msa0719420:CDS 30.0%
TACAAGTTATGGTTACATTC+TGG - chr5_1:14697577-14697596 Msa0719420:intron 30.0%
CTGGTTTACTTCCATATTTA+TGG - chr5_1:14697596-14697615 Msa0719420:intron 30.0%
!!! TTCCTTCCTTTTTTTTATCC+AGG - chr5_1:14697669-14697688 Msa0719420:intron 30.0%
ATCCTGGATAAAAAAAAGGA+AGG + chr5_1:14697674-14697693 None:intergenic 30.0%
TTTATCCAGGATATTGTCAT+TGG - chr5_1:14697682-14697701 Msa0719420:intron 30.0%
TATTCAAGATCTGGTTGAAA+TGG - chr5_1:14697717-14697736 Msa0719420:intron 30.0%
ATTCAAGATCTGGTTGAAAT+GGG - chr5_1:14697718-14697737 Msa0719420:intron 30.0%
CAAAACAGAATTCTGACATT+CGG + chr5_1:14697786-14697805 None:intergenic 30.0%
!! ATTCTGTTTTGTTCTCTCTT+AGG - chr5_1:14697795-14697814 Msa0719420:intron 30.0%
TAGCGTATTAGCAAATGTAT+TGG + chr5_1:14697869-14697888 None:intergenic 30.0%
! TACTGAATTTTCTTTGATCC+TGG - chr5_1:14697935-14697954 Msa0719420:intron 30.0%
ACGACTATAAAATAGACATG+TGG + chr5_1:14697972-14697991 None:intergenic 30.0%
! ACAAAAAATGGTAATGCACA+AGG + chr5_1:14698058-14698077 None:intergenic 30.0%
!!! GCATTACCATTTTTTGTTCT+AGG - chr5_1:14698061-14698080 Msa0719420:intron 30.0%
TATGCTCAGAAGAAATTAGA+AGG + chr5_1:14698223-14698242 None:intergenic 30.0%
CAGTGAAACAAAAAATAAGC+TGG + chr5_1:14698273-14698292 None:intergenic 30.0%
! ATACATACTTTTACAGGGTT+GGG + chr5_1:14698389-14698408 None:intergenic 30.0%
TATTTGCATGACATCATGAT+TGG + chr5_1:14698502-14698521 None:intergenic 30.0%
!! ATTTTTCTAGTAAAGCAAGC+AGG + chr5_1:14698560-14698579 None:intergenic 30.0%
GCACTATCATTATTCAAGAA+TGG - chr5_1:14698951-14698970 Msa0719420:intron 30.0%
! ACCAGTTCATACATAGTTTT+TGG + chr5_1:14699047-14699066 None:intergenic 30.0%
! TTGTTTTCTCTGCAATACTT+TGG - chr5_1:14699094-14699113 Msa0719420:intron 30.0%
!! GAAATAAGAACAGAAGTATC+TGG + chr5_1:14699215-14699234 None:intergenic 30.0%
TGGATTTGAATTCATCTAGT+AGG + chr5_1:14699275-14699294 None:intergenic 30.0%
!! ACATAATCTTCTAGAGTTAG+AGG + chr5_1:14699523-14699542 None:intergenic 30.0%
ATTATGTTCATAGAATTGGG+CGG - chr5_1:14699536-14699555 Msa0719420:intron 30.0%
CAAATGTGTGAAGAATGTAT+GGG + chr5_1:14699590-14699609 None:intergenic 30.0%
TCAAATGTGTGAAGAATGTA+TGG + chr5_1:14699591-14699610 None:intergenic 30.0%
TGAATGAATGGGAATATTTC+AGG - chr5_1:14699722-14699741 Msa0719420:intron 30.0%
GAATGAATGGGAATATTTCA+GGG - chr5_1:14699723-14699742 Msa0719420:intron 30.0%
TTCATGGAAAAAATCGAAAC+TGG + chr5_1:14699873-14699892 None:intergenic 30.0%
! TGATGATGAAGACTAAATAC+TGG - chr5_1:14700036-14700055 Msa0719420:CDS 30.0%
GTTGGATGAATATTTGAAAG+TGG - chr5_1:14700078-14700097 Msa0719420:CDS 30.0%
GATACATGGTACAACAAAAA+TGG + chr5_1:14700190-14700209 None:intergenic 30.0%
TTTCATCTAAACAAAGGACA+AGG + chr5_1:14700372-14700391 None:intergenic 30.0%
GAATTAGTGAGGAAAGAAAT+AGG - chr5_1:14700394-14700413 Msa0719420:five_prime_UTR 30.0%
AAAGAAATAGGGTGAAATGT+AGG - chr5_1:14700406-14700425 Msa0719420:five_prime_UTR 30.0%
! CCTATTTAGGGTATAGTAGT+GGG + chr5_1:14694582-14694601 None:intergenic 35.0%
! TCCTATTTAGGGTATAGTAG+TGG + chr5_1:14694583-14694602 None:intergenic 35.0%
!! GACTTTTGACTCTCCTATTT+AGG + chr5_1:14694595-14694614 None:intergenic 35.0%
! TTGTTGTTAAGGGTTTGTTC+GGG + chr5_1:14694746-14694765 None:intergenic 35.0%
! GTTGTTGTTAAGGGTTTGTT+CGG + chr5_1:14694747-14694766 None:intergenic 35.0%
! GAGTTCTGTGTTGTTGTTAA+GGG + chr5_1:14694756-14694775 None:intergenic 35.0%
! TGAGTTCTGTGTTGTTGTTA+AGG + chr5_1:14694757-14694776 None:intergenic 35.0%
! TCGTCTTCGTGTTTTCTTTT+GGG + chr5_1:14694827-14694846 None:intergenic 35.0%
! TTCGTCTTCGTGTTTTCTTT+TGG + chr5_1:14694828-14694847 None:intergenic 35.0%
! GAAGAAAAGGCACAACAAAT+CGG - chr5_1:14694892-14694911 Msa0719420:three_prime_UTR 35.0%
AACAAATCGGAGGAAAGTAA+TGG - chr5_1:14694905-14694924 Msa0719420:three_prime_UTR 35.0%
! AATGTGCTTGAGTGTTGTAA+GGG - chr5_1:14695040-14695059 Msa0719420:intron 35.0%
TCGTGATTTGATTGGAATTG+CGG - chr5_1:14695117-14695136 Msa0719420:intron 35.0%
GTATTAGGGTCTGTTTGAAT+TGG - chr5_1:14695289-14695308 Msa0719420:intron 35.0%
CTGAAAACAGCATATGAACA+TGG + chr5_1:14695686-14695705 None:intergenic 35.0%
AAGATATCCTTGAGAGCTTA+TGG + chr5_1:14695716-14695735 None:intergenic 35.0%
! TTTTACACTCTCACAACAGT+TGG + chr5_1:14695956-14695975 None:intergenic 35.0%
AACTTGTACAATCCTAAGTG+TGG - chr5_1:14696075-14696094 Msa0719420:CDS 35.0%
!! GCTTTTGATTGGGAAGAAAA+TGG - chr5_1:14696486-14696505 Msa0719420:CDS 35.0%
!! TTAATTTTGGTCTGCTTCGT+AGG - chr5_1:14696688-14696707 Msa0719420:intron 35.0%
TGCTTCGTAGGAATGAAAAT+TGG - chr5_1:14696700-14696719 Msa0719420:intron 35.0%
CGTAGGAATGAAAATTGGAA+AGG - chr5_1:14696705-14696724 Msa0719420:intron 35.0%
GAAAATTGGAAAGGGGAAAA+TGG - chr5_1:14696714-14696733 Msa0719420:intron 35.0%
!! ACCTGTTTCTATCTTGACAA+TGG - chr5_1:14696827-14696846 Msa0719420:intron 35.0%
!! CCTGTTTCTATCTTGACAAT+GGG - chr5_1:14696828-14696847 Msa0719420:intron 35.0%
AGATTTAAGTGACCAATAGC+AGG + chr5_1:14697035-14697054 None:intergenic 35.0%
GGTTATAACATTCCATTGGA+GGG + chr5_1:14697116-14697135 None:intergenic 35.0%
TGGTTATAACATTCCATTGG+AGG + chr5_1:14697117-14697136 None:intergenic 35.0%
GACTGTCTTAAATTTCCAAC+TGG - chr5_1:14697278-14697297 Msa0719420:CDS 35.0%
! GTGGAATCAGTTTGTTTGTA+TGG - chr5_1:14697458-14697477 Msa0719420:intron 35.0%
! GAATCAGTTTGTTTGTATGG+TGG - chr5_1:14697461-14697480 Msa0719420:intron 35.0%
! AGTGATTTGTGGTTGTTTGT+TGG + chr5_1:14697489-14697508 None:intergenic 35.0%
!! GATTTTAGTGCAGTGATTTG+TGG + chr5_1:14697500-14697519 None:intergenic 35.0%
CAAATCACTGCACTAAAATC+TGG - chr5_1:14697500-14697519 Msa0719420:CDS 35.0%
! AGTTCTTCCTTTCCTTTTGT+TGG - chr5_1:14697538-14697557 Msa0719420:CDS 35.0%
CCACAAAAGATACTTCTTGT+AGG + chr5_1:14697753-14697772 None:intergenic 35.0%
!!! CCTACAAGAAGTATCTTTTG+TGG - chr5_1:14697750-14697769 Msa0719420:intron 35.0%
!! ATTTTATTTGGTTGGCTCAC+TGG - chr5_1:14697836-14697855 Msa0719420:intron 35.0%
!! TTTTATTTGGTTGGCTCACT+GGG - chr5_1:14697837-14697856 Msa0719420:intron 35.0%
TCGTTATACGTGTTATAAGC+AGG + chr5_1:14698034-14698053 None:intergenic 35.0%
CAAGGACCTAGAACAAAAAA+TGG + chr5_1:14698070-14698089 None:intergenic 35.0%
CTCAGAAGAAATTAGAAGGA+AGG + chr5_1:14698219-14698238 None:intergenic 35.0%
! ATTTTCAACAGCTCGTCAAA+TGG - chr5_1:14698304-14698323 Msa0719420:intron 35.0%
TCACTTAGCTCAGGAATTTA+TGG - chr5_1:14698361-14698380 Msa0719420:intron 35.0%
! GATACATACTTTTACAGGGT+TGG + chr5_1:14698390-14698409 None:intergenic 35.0%
TGATGTCATGCAAATAGTTG+AGG - chr5_1:14698506-14698525 Msa0719420:intron 35.0%
CATGCAAATAGTTGAGGTAT+TGG - chr5_1:14698512-14698531 Msa0719420:intron 35.0%
!!! AGGCATACTTTTGAGATTTG+TGG + chr5_1:14698584-14698603 None:intergenic 35.0%
ATGAACACAGAATCAAAGGT+AGG + chr5_1:14698604-14698623 None:intergenic 35.0%
CTGAATGAACACAGAATCAA+AGG + chr5_1:14698608-14698627 None:intergenic 35.0%
! CATTCAGTTGCCTCTTTTTA+CGG - chr5_1:14698621-14698640 Msa0719420:intron 35.0%
AAGTTGACAACCGTAAAAAG+AGG + chr5_1:14698634-14698653 None:intergenic 35.0%
TGGAGAAAATGCTTCAACAA+GGG - chr5_1:14698734-14698753 Msa0719420:intron 35.0%
! ATCAGCAATAACTTGTAACC+AGG + chr5_1:14698832-14698851 None:intergenic 35.0%
TAAATAATGTCTTCAGGGGT+TGG - chr5_1:14698880-14698899 Msa0719420:intron 35.0%
!!! TACATAGTTTTTGGCTTCCA+GGG + chr5_1:14699038-14699057 None:intergenic 35.0%
!!! ATACATAGTTTTTGGCTTCC+AGG + chr5_1:14699039-14699058 None:intergenic 35.0%
GCCAAAAACTATGTATGAAC+TGG - chr5_1:14699043-14699062 Msa0719420:intron 35.0%
CTATAACTTCAAAAGGGAGA+AGG + chr5_1:14699237-14699256 None:intergenic 35.0%
!!! ATCCACTTTTTTATTCCCCT+TGG - chr5_1:14699290-14699309 Msa0719420:intron 35.0%
! ATTGTTTGTTAAGGACCAAG+GGG + chr5_1:14699308-14699327 None:intergenic 35.0%
! CATTGTTTGTTAAGGACCAA+GGG + chr5_1:14699309-14699328 None:intergenic 35.0%
! AGTCTGTCCATTGTTTGTTA+AGG + chr5_1:14699317-14699336 None:intergenic 35.0%
AAAGTGACAATGACAATGAG+TGG + chr5_1:14699393-14699412 None:intergenic 35.0%
TTGATCACTACTTCAACATC+TGG + chr5_1:14699490-14699509 None:intergenic 35.0%
TCCTCTCTCATATGAATGAA+TGG - chr5_1:14699710-14699729 Msa0719420:intron 35.0%
CCTCTCTCATATGAATGAAT+GGG - chr5_1:14699711-14699730 Msa0719420:intron 35.0%
CCAAATTTCAAAAGATCGTC+TGG + chr5_1:14699798-14699817 None:intergenic 35.0%
!!! CCAGACGATCTTTTGAAATT+TGG - chr5_1:14699795-14699814 Msa0719420:intron 35.0%
TGGCACACATGTTAAGAAAA+AGG - chr5_1:14699815-14699834 Msa0719420:intron 35.0%
AGTTCATCTTAGTAGCTTCA+TGG + chr5_1:14699889-14699908 None:intergenic 35.0%
ATATAGGAGTCCAAGCTTTA+TGG - chr5_1:14699950-14699969 Msa0719420:CDS 35.0%
! TATAGGAGTCCAAGCTTTAT+GGG - chr5_1:14699951-14699970 Msa0719420:CDS 35.0%
CCCACTACTATACCCTAAAT+AGG - chr5_1:14694579-14694598 Msa0719420:three_prime_UTR 40.0%
AAATCGGAGGAAAGTAATGG+TGG - chr5_1:14694908-14694927 Msa0719420:three_prime_UTR 40.0%
! AAGTAATGGTGGTGATGTGT+CGG - chr5_1:14694919-14694938 Msa0719420:three_prime_UTR 40.0%
TTCTTTCCAGTCACTGCAAT+CGG + chr5_1:14694962-14694981 None:intergenic 40.0%
! GAATGTGCTTGAGTGTTGTA+AGG - chr5_1:14695039-14695058 Msa0719420:intron 40.0%
TCACGACCATCCAACAAAAA+CGG + chr5_1:14695103-14695122 None:intergenic 40.0%
TTGGATGGTCGTGATTTGAT+TGG - chr5_1:14695109-14695128 Msa0719420:intron 40.0%
!! GTCAGGTTAGTTTGGTACTT+TGG - chr5_1:14695147-14695166 Msa0719420:intron 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr5_1:14695337-14695356 Msa0719420:intron 40.0%
CCAAACAGGGCTATATCATA+TGG + chr5_1:14695421-14695440 None:intergenic 40.0%
CCATATGATATAGCCCTGTT+TGG - chr5_1:14695418-14695437 Msa0719420:CDS 40.0%
CATATGAACATGGGCCTATT+TGG + chr5_1:14695676-14695695 None:intergenic 40.0%
CTTATGTCCATAAGCTCTCA+AGG - chr5_1:14695706-14695725 Msa0719420:intron 40.0%
TGTTTATCCAAATAGGGCCT+CGG - chr5_1:14695830-14695849 Msa0719420:intron 40.0%
TATGAATAAGCGGAAGAGCA+AGG - chr5_1:14696169-14696188 Msa0719420:intron 40.0%
ATGAATAAGCGGAAGAGCAA+GGG - chr5_1:14696170-14696189 Msa0719420:intron 40.0%
GGCCAAGTTCATAGAAGTAA+AGG + chr5_1:14696422-14696441 None:intergenic 40.0%
! ATGAACTTGGCCTTTCTCTT+TGG - chr5_1:14696430-14696449 Msa0719420:CDS 40.0%
TGATTGGGAAGAAAATGGCA+AGG - chr5_1:14696491-14696510 Msa0719420:CDS 40.0%
GATTGGGAAGAAAATGGCAA+GGG - chr5_1:14696492-14696511 Msa0719420:CDS 40.0%
TGATTGGGAAACAAACGACA+CGG - chr5_1:14696535-14696554 Msa0719420:intron 40.0%
AGGGATCCTGATATTATGAG+TGG - chr5_1:14696578-14696597 Msa0719420:intron 40.0%
GGGATCCTGATATTATGAGT+GGG - chr5_1:14696579-14696598 Msa0719420:intron 40.0%
CCCATTGTCAAGATAGAAAC+AGG + chr5_1:14696831-14696850 None:intergenic 40.0%
TAGCCTTCCCTTGATACAAA+AGG - chr5_1:14696938-14696957 Msa0719420:intron 40.0%
! CAACCTTTTGTATCAAGGGA+AGG + chr5_1:14696944-14696963 None:intergenic 40.0%
GCGAGCACAAGTATGATAAA+AGG + chr5_1:14697011-14697030 None:intergenic 40.0%
AACATCCTCTCTATTGGGTT+GGG + chr5_1:14697224-14697243 None:intergenic 40.0%
TAACATCCTCTCTATTGGGT+TGG + chr5_1:14697225-14697244 None:intergenic 40.0%
AAATGGATCTAGTACCCAGT+TGG + chr5_1:14697296-14697315 None:intergenic 40.0%
TCAGATGTATTGTGTGATGC+TGG - chr5_1:14697422-14697441 Msa0719420:intron 40.0%
TGTGATGCTGGTAAATCTTG+TGG - chr5_1:14697434-14697453 Msa0719420:intron 40.0%
GAGTTCCAATGACAATATCC+TGG + chr5_1:14697690-14697709 None:intergenic 40.0%
GATATTGTCATTGGAACTCC+CGG - chr5_1:14697691-14697710 Msa0719420:intron 40.0%
AACCAGATCTTGAATACGAC+CGG + chr5_1:14697713-14697732 None:intergenic 40.0%
ACGCTAGTGTTGCAATATAC+TGG - chr5_1:14697883-14697902 Msa0719420:intron 40.0%
CAAATAGTCCGCTCTATACT+TGG - chr5_1:14698125-14698144 Msa0719420:intron 40.0%
ATGTCTGACCAAGTATAGAG+CGG + chr5_1:14698136-14698155 None:intergenic 40.0%
ATACTTGGTCAGACATGTTC+TGG - chr5_1:14698140-14698159 Msa0719420:intron 40.0%
TGGTTATGTTCAGTGCTACA+TGG - chr5_1:14698324-14698343 Msa0719420:intron 40.0%
GCTAAGTGATGAACTGCTAA+CGG + chr5_1:14698350-14698369 None:intergenic 40.0%
AACTTGTGACAGGTTGTTGT+AGG - chr5_1:14698459-14698478 Msa0719420:intron 40.0%
CTTTCTCAGGAATCGAGTAT+TGG - chr5_1:14698678-14698697 Msa0719420:intron 40.0%
TGTACAAATGGGAAACCACA+CGG - chr5_1:14698710-14698729 Msa0719420:intron 40.0%
GTGGAGAAAATGCTTCAACA+AGG - chr5_1:14698733-14698752 Msa0719420:intron 40.0%
!! ATATACCTGGTGAAAGTACC+TGG - chr5_1:14698811-14698830 Msa0719420:CDS 40.0%
TGGAAAGCAGTGTCTATAAG+TGG - chr5_1:14698900-14698919 Msa0719420:intron 40.0%
GACCAAGGGGAATAAAAAAG+TGG + chr5_1:14699295-14699314 None:intergenic 40.0%
! CCATTGTTTGTTAAGGACCA+AGG + chr5_1:14699310-14699329 None:intergenic 40.0%
CCTTGGTCCTTAACAAACAA+TGG - chr5_1:14699307-14699326 Msa0719420:intron 40.0%
TGGACAGACTAGTGACTATT+AGG - chr5_1:14699327-14699346 Msa0719420:intron 40.0%
CCCATTCATTCATATGAGAG+AGG + chr5_1:14699714-14699733 None:intergenic 40.0%
! GAATATTTCAGGGACTTGCT+GGG - chr5_1:14699733-14699752 Msa0719420:intron 40.0%
!! AATATTTCAGGGACTTGCTG+GGG - chr5_1:14699734-14699753 Msa0719420:intron 40.0%
! ATAGGAGTCCAAGCTTTATG+GGG - chr5_1:14699952-14699971 Msa0719420:CDS 40.0%
!! TTAGACTTTGGAGCATCAAC+AGG + chr5_1:14699995-14700014 None:intergenic 40.0%
!! ACCATGTATCGGCTTGTAAT+TGG - chr5_1:14700200-14700219 Msa0719420:CDS 40.0%
!! CCATGTATCGGCTTGTAATT+GGG - chr5_1:14700201-14700220 Msa0719420:CDS 40.0%
CCATGGTAGGAAAATGGTGA+TGG + chr5_1:14694691-14694710 None:intergenic 45.0%
! CCATCACCATTTTCCTACCA+TGG - chr5_1:14694688-14694707 Msa0719420:three_prime_UTR 45.0%
!! TTCGGGTTCGGTGGATAAAA+CGG + chr5_1:14694729-14694748 None:intergenic 45.0%
! GTTAAGGGTTTGTTCGGGTT+CGG + chr5_1:14694741-14694760 None:intergenic 45.0%
!!! TTCGGCGTCGTTTTGAAGAT+TGG + chr5_1:14694852-14694871 None:intergenic 45.0%
! GAAAAGGCACAACAAATCGG+AGG - chr5_1:14694895-14694914 Msa0719420:three_prime_UTR 45.0%
TGCCGGAGATGAGAAATACA+CGG - chr5_1:14694982-14695001 Msa0719420:CDS 45.0%
GGTGAAGAGGTTTGAGGATT+CGG - chr5_1:14695006-14695025 Msa0719420:CDS 45.0%
GTGAAGAGGTTTGAGGATTC+GGG - chr5_1:14695007-14695026 Msa0719420:CDS 45.0%
TGAAGAGGTTTGAGGATTCG+GGG - chr5_1:14695008-14695027 Msa0719420:CDS 45.0%
CAACACTCAAGCACATTCTC+AGG + chr5_1:14695037-14695056 None:intergenic 45.0%
TTGATTGGAATTGCGGCAAC+TGG - chr5_1:14695124-14695143 Msa0719420:intron 45.0%
TGATTGGAATTGCGGCAACT+GGG - chr5_1:14695125-14695144 Msa0719420:intron 45.0%
GAACATGGGCCTATTTGGAT+TGG + chr5_1:14695671-14695690 None:intergenic 45.0%
! CTAGGGAAGACACTTGCTTT+TGG - chr5_1:14696125-14696144 Msa0719420:intron 45.0%
AAGAGCAAGGGTTCTTCCAA+GGG - chr5_1:14696182-14696201 Msa0719420:intron 45.0%
GAAAATGGCAAGGGAATGAG+TGG - chr5_1:14696501-14696520 Msa0719420:CDS 45.0%
GATTGGGAAACAAACGACAC+GGG - chr5_1:14696536-14696555 Msa0719420:intron 45.0%
AGTTATACCTCTCCCTCCAA+TGG - chr5_1:14697101-14697120 Msa0719420:intron 45.0%
TAACATTCCATTGGAGGGAG+AGG + chr5_1:14697111-14697130 None:intergenic 45.0%
TGCTGGTAAATCTTGTGGTG+TGG - chr5_1:14697439-14697458 Msa0719420:intron 45.0%
ACCAGATCTTGAATACGACC+GGG + chr5_1:14697712-14697731 None:intergenic 45.0%
AGGTCCTTGATGAAGCAGAT+CGG - chr5_1:14698081-14698100 Msa0719420:intron 45.0%
AGCAGTTCATCACTTAGCTC+AGG - chr5_1:14698352-14698371 Msa0719420:intron 45.0%
GTACAAATGGGAAACCACAC+GGG - chr5_1:14698711-14698730 Msa0719420:intron 45.0%
TGTAACCAGGTACTTTCACC+AGG + chr5_1:14698819-14698838 None:intergenic 45.0%
GAATGGAAGCTGTCCTTTGA+TGG - chr5_1:14698968-14698987 Msa0719420:intron 45.0%
!! ATCATATCAGTTTGCTGCCC+TGG - chr5_1:14699018-14699037 Msa0719420:intron 45.0%
CTGCAATACTTTGGCCATGT+TGG - chr5_1:14699103-14699122 Msa0719420:intron 45.0%
GGAATATTTCAGGGACTTGC+TGG - chr5_1:14699732-14699751 Msa0719420:intron 45.0%
!!! GTGAACGTTTTGAGAGAAGC+AGG - chr5_1:14699762-14699781 Msa0719420:intron 45.0%
CCCAATTACAAGCCGATACA+TGG + chr5_1:14700204-14700223 None:intergenic 45.0%
!! ATAAAACTAATAAATAAAAT+AGG + chr5_1:14696321-14696340 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTAAACAA+AGG - chr5_1:14696664-14696683 Msa0719420:CDS 5.0%
!!! TTTTTTTTTTTTTAAACAAA+GGG - chr5_1:14696665-14696684 Msa0719420:CDS 5.0%
!! TATTATATTATCAAAAAAAA+TGG + chr5_1:14698789-14698808 None:intergenic 5.0%
GAGGCGAAAAGCTGAAGAGA+TGG + chr5_1:14694648-14694667 None:intergenic 50.0%
! TCTCTTCAGCTTTTCGCCTC+TGG - chr5_1:14694648-14694667 Msa0719420:three_prime_UTR 50.0%
TGCGAGCCATGGTAGGAAAA+TGG + chr5_1:14694697-14694716 None:intergenic 50.0%
!! TCGTTTTTGCGAGCCATGGT+AGG + chr5_1:14694704-14694723 None:intergenic 50.0%
!! TGGTGGTGATGTGTCGGTTT+CGG - chr5_1:14694925-14694944 Msa0719420:three_prime_UTR 50.0%
GATGAACCGATTGCAGTGAC+TGG - chr5_1:14694953-14694972 Msa0719420:exon 50.0%
GCAGTGACTGGAAAGAATGC+CGG - chr5_1:14694965-14694984 Msa0719420:CDS 50.0%
CGCCGTGTATTTCTCATCTC+CGG + chr5_1:14694987-14695006 None:intergenic 50.0%
CGGAGATGAGAAATACACGG+CGG - chr5_1:14694985-14695004 Msa0719420:CDS 50.0%
AGAAATACACGGCGGTGAAG+AGG - chr5_1:14694993-14695012 Msa0719420:CDS 50.0%
GCACGTGATTGAATCGGAGA+AGG + chr5_1:14695076-14695095 None:intergenic 50.0%
CTCCGATTCAATCACGTGCT+TGG - chr5_1:14695077-14695096 Msa0719420:intron 50.0%
GGCCAAGCACGTGATTGAAT+CGG + chr5_1:14695082-14695101 None:intergenic 50.0%
!!! ACGTGCTTGGCCGTTTTTGT+TGG - chr5_1:14695090-14695109 Msa0719420:intron 50.0%
!!! GCTTGGCCGTTTTTGTTGGA+TGG - chr5_1:14695094-14695113 Msa0719420:intron 50.0%
! GCAACTGGGTCAGGTTAGTT+TGG - chr5_1:14695139-14695158 Msa0719420:intron 50.0%
CTCTAAACCGAGGCCCTATT+TGG + chr5_1:14695840-14695859 None:intergenic 50.0%
GAAGAGCAAGGGTTCTTCCA+AGG - chr5_1:14696181-14696200 Msa0719420:intron 50.0%
! GGAGAGAGCATAAGGCAAAG+AGG + chr5_1:14696215-14696234 None:intergenic 50.0%
CCTTATGCTCTCTCCTACGA+GGG - chr5_1:14696220-14696239 Msa0719420:intron 50.0%
CAAACGACACGGGAATGAGT+TGG - chr5_1:14696546-14696565 Msa0719420:intron 50.0%
ACTCTCCCAACCCAATAGAG+AGG - chr5_1:14697216-14697235 Msa0719420:intron 50.0%
TCCCGGTCGTATTCAAGATC+TGG - chr5_1:14697708-14697727 Msa0719420:intron 50.0%
CATGTGGCAACTGTCTATCC+AGG + chr5_1:14697956-14697975 None:intergenic 50.0%
GCATCCGATCTGCTTCATCA+AGG + chr5_1:14698088-14698107 None:intergenic 50.0%
AGCAGATCGGATGCTTGACA+TGG - chr5_1:14698094-14698113 Msa0719420:intron 50.0%
GCAGATCGGATGCTTGACAT+GGG - chr5_1:14698095-14698114 Msa0719420:intron 50.0%
ACAGGTTGTTGTAGGCTCAG+AGG - chr5_1:14698467-14698486 Msa0719420:intron 50.0%
! AAGCATTTTCTCCACCCGTG+TGG + chr5_1:14698728-14698747 None:intergenic 50.0%
ATCACAGCATGAGCGCACAA+AGG - chr5_1:14698929-14698948 Msa0719420:intron 50.0%
TGGGCAGATTGCTACTGATG+TGG - chr5_1:14699444-14699463 Msa0719420:intron 50.0%
GTTCATAGAATTGGGCGGAC+TGG - chr5_1:14699541-14699560 Msa0719420:intron 50.0%
GAAGTGAGCCCCATAAAGCT+TGG + chr5_1:14699963-14699982 None:intergenic 50.0%
GCTTTATGGGGCTCACTTCA+AGG - chr5_1:14699964-14699983 Msa0719420:CDS 50.0%
AGTGAAGCAGCTCGAACCAG+AGG + chr5_1:14694667-14694686 None:intergenic 55.0%
! AAGGGTTTGTTCGGGTTCGG+TGG + chr5_1:14694738-14694757 None:intergenic 55.0%
!! TGATGTGTCGGTTTCGGCGT+CGG - chr5_1:14694931-14694950 Msa0719420:three_prime_UTR 55.0%
GCAAGGGTTCTTCCAAGGGT+CGG - chr5_1:14696186-14696205 Msa0719420:intron 55.0%
GCAAAGAGGATTCCGACCCT+TGG + chr5_1:14696201-14696220 None:intergenic 55.0%
GCCTTATGCTCTCTCCTACG+AGG - chr5_1:14696219-14696238 Msa0719420:intron 55.0%
! CCCTCGTAGGAGAGAGCATA+AGG + chr5_1:14696223-14696242 None:intergenic 55.0%
TGTTGAGCTAGCTCCCTCGT+AGG + chr5_1:14696236-14696255 None:intergenic 55.0%
CAAATGGGAAACCACACGGG+TGG - chr5_1:14698714-14698733 Msa0719420:intron 55.0%
TGATGTGGCTGCACGAGGAT+TGG - chr5_1:14699459-14699478 Msa0719420:intron 55.0%
!!! GGCGTCGTTTTTGCGAGCCA+TGG + chr5_1:14694708-14694727 None:intergenic 60.0%
CACGGCGGTGAAGAGGTTTG+AGG - chr5_1:14695000-14695019 Msa0719420:CDS 60.0%
GGAATTGCGGCAACTGGGTC+AGG - chr5_1:14695130-14695149 Msa0719420:intron 60.0%
CTTGTGCTCGCGCCTGCTAT+TGG - chr5_1:14697020-14697039 Msa0719420:intron 60.0%
GCTACTGATGTGGCTGCACG+AGG - chr5_1:14699454-14699473 Msa0719420:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 14694568 14700444 14694568 ID=Msa0719420;Name=Msa0719420
chr5_1 mRNA 14694568 14700444 14694568 ID=Msa0719420-mRNA-1;Parent=Msa0719420;Name=Msa0719420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=139|1|1|1|1|1|12|393|522
chr5_1 exon 14694568 14695056 14694568 ID=Msa0719420-mRNA-1:exon:5723;Parent=Msa0719420-mRNA-1
chr5_1 exon 14695176 14695268 14695176 ID=Msa0719420-mRNA-1:exon:5722;Parent=Msa0719420-mRNA-1
chr5_1 exon 14695397 14695561 14695397 ID=Msa0719420-mRNA-1:exon:5721;Parent=Msa0719420-mRNA-1
chr5_1 exon 14696023 14696116 14696023 ID=Msa0719420-mRNA-1:exon:5720;Parent=Msa0719420-mRNA-1
chr5_1 exon 14696257 14696325 14696257 ID=Msa0719420-mRNA-1:exon:5719;Parent=Msa0719420-mRNA-1
chr5_1 exon 14696417 14696541 14696417 ID=Msa0719420-mRNA-1:exon:5718;Parent=Msa0719420-mRNA-1
chr5_1 exon 14696612 14696697 14696612 ID=Msa0719420-mRNA-1:exon:5717;Parent=Msa0719420-mRNA-1
chr5_1 exon 14696851 14696929 14696851 ID=Msa0719420-mRNA-1:exon:5716;Parent=Msa0719420-mRNA-1
chr5_1 exon 14697241 14697321 14697241 ID=Msa0719420-mRNA-1:exon:5715;Parent=Msa0719420-mRNA-1
chr5_1 exon 14697486 14697593 14697486 ID=Msa0719420-mRNA-1:exon:5714;Parent=Msa0719420-mRNA-1
chr5_1 exon 14698756 14698883 14698756 ID=Msa0719420-mRNA-1:exon:5713;Parent=Msa0719420-mRNA-1
chr5_1 exon 14699861 14700444 14699861 ID=Msa0719420-mRNA-1:exon:5712;Parent=Msa0719420-mRNA-1
chr5_1 five_prime_UTR 14700306 14700444 14700306 ID=Msa0719420-mRNA-1:five_prime_utr;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14699861 14700305 14699861 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14698756 14698883 14698756 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14697486 14697593 14697486 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14697241 14697321 14697241 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14696851 14696929 14696851 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14696612 14696697 14696612 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14696417 14696541 14696417 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14696257 14696325 14696257 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14696023 14696116 14696023 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14695397 14695561 14695397 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14695176 14695268 14695176 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 CDS 14694961 14695056 14694961 ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1 three_prime_UTR 14694568 14694960 14694568 ID=Msa0719420-mRNA-1:three_prime_utr;Parent=Msa0719420-mRNA-1
Gene Sequence

>Msa0719420

ATGGCTCGCAAAAACGACGCCGTTTTATCCACCGAACCCGAACAAACCCTTAACAACAACACAGAACTCAAATCTTCGAAGAAGAAGAACAAAAAGAACAAACACGAAGAAAACACTCCCAAAAGAAAACACGAAGACGAAACCAATCTTCAAAACGACGCCGAATCAGAGAAGAAAAGTAAGAAGAAGAAAAGGCACAACAAATCGGAGGAAAGTAATGGTGGTGATGTGTCGGTTTCGGCGTCGGATGAACCGATTGCAGTGACTGGAAAGAATGCCGGAGATGAGAAATACACGGCGGTGAAGAGGTTTGAGGATTCGGGGCTACCTGAGAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCAACTGGGTCAGGGAAGACACTTGCTTTTGGAATACCAGCTATTATGCATGTTATGAATAAGCGGAAGAGCAAGGGTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACGAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCAACAAACAACCACAAATCACTGCACTAAAATCTGGCATTGATATTGTCATTGGAACTCCCGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGGGTGGAGAAAATGCTTCAACAAGGGGGTTGGAAAGCAGTGTCTATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATTTGAATAAGGGACTTGCTGGGGAGCTTGTGAACGTTTTGAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGATGAAGACTAA

Protein sequence

>Msa0719420

MARKNDAVLSTEPEQTLNNNTELKSSKKKNKKNKHEENTPKRKHEDETNLQNDAESEKKSKKKKRHNKSEESNGGDVSVSASDEPIAVTGKNAGDEKYTAVKRFEDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTNKQPQITALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED*