AlfalfaGEDB | Msa0719420

M. sativa cultivar zhongmu-4 / Msa0719420

KEGG: K14811
GO: GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719420	XP_003612690.1	96.941	523	15	1	1	522	1	523	0.0	1043

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719420	sp\|Q6YS30\|RH5_ORYSJ	72.363	474	124	2	48	521	46	512	0.0	718

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719420	G7K9I9	96.941	523	15	1	1	522	1	523	0.0	1043

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0719420	0.821095	4.844158e-53	-8.615850e-47
Msa0002790	Msa0719420	0.844847	5.865101e-59	-8.615850e-47
Msa0003640	Msa0719420	0.818039	2.412993e-52	-8.615850e-47
Msa0003720	Msa0719420	0.821389	4.143312e-53	-8.615850e-47
Msa0004060	Msa0719420	0.815362	9.612018e-52	-8.615850e-47
Msa0004950	Msa0719420	0.815524	8.844828e-52	-8.615850e-47
Msa0006880	Msa0719420	0.807914	4.005512e-50	-8.615850e-47
Msa0007850	Msa0719420	0.852950	3.296812e-61	-8.615850e-47
Msa0010490	Msa0719420	0.851555	8.223823e-61	-8.615850e-47
Msa0010500	Msa0719420	0.837912	3.928776e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719420	MtrunA17_Chr5g0409981	96.941	523	15	1	1	522	1	523	0.0	1043
Msa0719420	MtrunA17_Chr2g0330401	50.388	387	184	4	101	485	94	474	4.30e-128	382
Msa0719420	MtrunA17_Chr6g0449911	43.609	399	210	8	86	481	152	538	1.28e-103	326
Msa0719420	MtrunA17_Chr2g0293631	43.073	397	215	7	93	486	486	874	3.08e-97	319
Msa0719420	MtrunA17_Chr7g0270131	43.655	394	211	7	93	482	222	608	5.48e-94	302
Msa0719420	MtrunA17_Chr3g0121351	39.862	434	238	8	68	486	114	539	2.90e-87	281
Msa0719420	MtrunA17_Chr4g0058591	44.817	328	173	4	101	426	200	521	6.48e-87	277
Msa0719420	MtrunA17_Chr1g0176041	38.839	448	251	8	69	500	124	564	2.64e-86	278
Msa0719420	MtrunA17_Chr2g0277821	42.746	386	209	6	101	481	502	880	4.05e-86	287
Msa0719420	MtrunA17_Chr4g0063551	41.346	416	221	8	85	484	126	534	6.35e-86	279

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719420	AT1G31970.1	77.397	438	98	1	86	522	100	537	0.0	717
Msa0719420	AT5G63120.2	48.284	408	199	6	76	481	143	540	3.37e-128	386
Msa0719420	AT1G55150.1	49.871	387	186	4	101	485	98	478	1.04e-125	377
Msa0719420	AT1G55150.2	49.871	387	186	4	101	485	123	503	9.93e-125	375
Msa0719420	AT5G14610.6	43.928	387	206	7	104	487	163	541	1.36e-102	322
Msa0719420	AT5G14610.2	43.928	387	206	7	104	487	163	541	1.59e-102	322
Msa0719420	AT5G14610.5	43.928	387	206	7	104	487	171	549	3.37e-102	321
Msa0719420	AT3G01540.1	42.894	387	210	7	104	487	160	538	9.67e-101	316
Msa0719420	AT3G01540.4	42.894	387	210	7	104	487	160	538	1.04e-100	316
Msa0719420	AT3G01540.2	42.894	387	210	7	104	487	160	538	1.04e-100	316

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Find 138 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAAATCATACATA+GGG	0.437566	5_1:+14694708	None:intergenic
AAACTTAAAATCATACATAG+GGG	0.674503	5_1:+14694709	None:intergenic
AAAGAAATAGGGTGAAATGT+AGG	0.506658	5_1:-14694584	Msa0719420:three_prime_UTR
AAATCGGAGGAAAGTAATGG+TGG	0.659280	5_1:-14700082	Msa0719420:CDS
AACAAATCGGAGGAAAGTAA+TGG	0.643585	5_1:-14700085	Msa0719420:CDS
AACCAGATCTTGAATACGAC+CGG	0.475620	5_1:+14697280	None:intergenic
AACTTGTGACAGGTTGTTGT+AGG	0.435320	5_1:-14696531	Msa0719420:intron
AAGAGCAAGGGTTCTTCCAA+GGG	0.602731	5_1:-14698808	Msa0719420:CDS
AAGATTATGTTCATAGAATT+GGG	0.393407	5_1:-14695457	Msa0719420:CDS
AAGGGTTTGTTCGGGTTCGG+TGG	0.571612	5_1:+14700255	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAACAGCATATGAACAT+GGG	+	chr5_1:14695685-14695704	None:intergenic	30.0%
TTCATAACATGCATAATAGC+TGG	+	chr5_1:14696155-14696174	None:intergenic	30.0%
TAGCAATATTGCATCATGTA+TGG	-	chr5_1:14696381-14696400	Msa0719420:intron	30.0%
ATCCTTTACTTCTATGAACT+TGG	-	chr5_1:14696417-14696436	Msa0719420:CDS	30.0%
AATTTCCCACTCATAATATC+AGG	+	chr5_1:14696587-14696606	None:intergenic	30.0%
GTAGGAATGAAAATTGGAAA+GGG	-	chr5_1:14696706-14696725	Msa0719420:intron	30.0%
TAGGAATGAAAATTGGAAAG+GGG	-	chr5_1:14696707-14696726	Msa0719420:intron	30.0%
AAAATTGGAAAGGGGAAAAT+GGG	-	chr5_1:14696715-14696734	Msa0719420:intron	30.0%
AATTGTAGAACCCAATTTAC+AGG	+	chr5_1:14697195-14697214	None:intergenic	30.0%
AAAGTAACATCCTCTCTATT+GGG	+	chr5_1:14697229-14697248	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	14694568	14700444	14694568	ID=Msa0719420;Name=Msa0719420
chr5_1	mRNA	14694568	14700444	14694568	ID=Msa0719420-mRNA-1;Parent=Msa0719420;Name=Msa0719420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=139\|1\|1\|1\|1\|1\|12\|393\|522
chr5_1	exon	14694568	14695056	14694568	ID=Msa0719420-mRNA-1:exon:5723;Parent=Msa0719420-mRNA-1
chr5_1	exon	14695176	14695268	14695176	ID=Msa0719420-mRNA-1:exon:5722;Parent=Msa0719420-mRNA-1
chr5_1	exon	14695397	14695561	14695397	ID=Msa0719420-mRNA-1:exon:5721;Parent=Msa0719420-mRNA-1
chr5_1	exon	14696023	14696116	14696023	ID=Msa0719420-mRNA-1:exon:5720;Parent=Msa0719420-mRNA-1
chr5_1	exon	14696257	14696325	14696257	ID=Msa0719420-mRNA-1:exon:5719;Parent=Msa0719420-mRNA-1
chr5_1	exon	14696417	14696541	14696417	ID=Msa0719420-mRNA-1:exon:5718;Parent=Msa0719420-mRNA-1
chr5_1	exon	14696612	14696697	14696612	ID=Msa0719420-mRNA-1:exon:5717;Parent=Msa0719420-mRNA-1
chr5_1	exon	14696851	14696929	14696851	ID=Msa0719420-mRNA-1:exon:5716;Parent=Msa0719420-mRNA-1
chr5_1	exon	14697241	14697321	14697241	ID=Msa0719420-mRNA-1:exon:5715;Parent=Msa0719420-mRNA-1
chr5_1	exon	14697486	14697593	14697486	ID=Msa0719420-mRNA-1:exon:5714;Parent=Msa0719420-mRNA-1
chr5_1	exon	14698756	14698883	14698756	ID=Msa0719420-mRNA-1:exon:5713;Parent=Msa0719420-mRNA-1
chr5_1	exon	14699861	14700444	14699861	ID=Msa0719420-mRNA-1:exon:5712;Parent=Msa0719420-mRNA-1
chr5_1	five_prime_UTR	14700306	14700444	14700306	ID=Msa0719420-mRNA-1:five_prime_utr;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14699861	14700305	14699861	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14698756	14698883	14698756	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14697486	14697593	14697486	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14697241	14697321	14697241	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14696851	14696929	14696851	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14696612	14696697	14696612	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14696417	14696541	14696417	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14696257	14696325	14696257	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14696023	14696116	14696023	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14695397	14695561	14695397	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14695176	14695268	14695176	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	CDS	14694961	14695056	14694961	ID=Msa0719420-mRNA-1:cds;Parent=Msa0719420-mRNA-1
chr5_1	three_prime_UTR	14694568	14694960	14694568	ID=Msa0719420-mRNA-1:three_prime_utr;Parent=Msa0719420-mRNA-1

Gene Sequence

>Msa0719420

ATGGCTCGCAAAAACGACGCCGTTTTATCCACCGAACCCGAACAAACCCTTAACAACAACACAGAACTCAAATCTTCGAAGAAGAAGAACAAAAAGAACAAACACGAAGAAAACACTCCCAAAAGAAAACACGAAGACGAAACCAATCTTCAAAACGACGCCGAATCAGAGAAGAAAAGTAAGAAGAAGAAAAGGCACAACAAATCGGAGGAAAGTAATGGTGGTGATGTGTCGGTTTCGGCGTCGGATGAACCGATTGCAGTGACTGGAAAGAATGCCGGAGATGAGAAATACACGGCGGTGAAGAGGTTTGAGGATTCGGGGCTACCTGAGAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCAACTGGGTCAGGGAAGACACTTGCTTTTGGAATACCAGCTATTATGCATGTTATGAATAAGCGGAAGAGCAAGGGTTCTTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACGAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCAACAAACAACCACAAATCACTGCACTAAAATCTGGCATTGATATTGTCATTGGAACTCCCGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGGGTGGAGAAAATGCTTCAACAAGGGGGTTGGAAAGCAGTGTCTATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATTTGAATAAGGGACTTGCTGGGGAGCTTGTGAACGTTTTGAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGATGAAGACTAA

Protein sequence

>Msa0719420

MARKNDAVLSTEPEQTLNNNTELKSSKKKNKKNKHEENTPKRKHEDETNLQNDAESEKKSKKKKRHNKSEESNGGDVSVSASDEPIAVTGKNAGDEKYTAVKRFEDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTNKQPQITALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED*