AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608090 MtrunA17_Chr2g0312891 96.471 170 5 1 1 170 1 169 2.50e-119 334
Msa0608090 MtrunA17_Chr4g0039861 97.458 118 3 0 1 118 1 118 3.47e-82 238
Msa0608090 MtrunA17_Chr4g0039871 98.113 53 1 0 118 170 27 79 4.72e-32 110
Msa0608090 MtrunA17_Chr5g0445201 46.269 67 36 0 97 163 77 143 2.82e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608090 AT3G10110.1 68.452 168 52 1 2 169 6 172 1.83e-71 213
Msa0608090 AT3G10110.4 66.901 142 46 1 2 143 6 146 1.05e-53 167
Msa0608090 AT3G10110.3 67.521 117 37 1 2 118 6 121 1.43e-40 134
Msa0608090 AT3G10110.2 67.521 117 37 1 2 118 6 121 1.43e-40 134
Msa0608090 AT5G55510.1 45.070 71 39 0 98 168 87 157 8.49e-12 61.6
Msa0608090 AT4G26670.1 45.070 71 39 0 98 168 87 157 9.12e-12 61.2

Find 87 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACAGTGGGCAAACTTA+TGG 0.181883 4_2:-55092672 None:intergenic
CACAACCCTTTCTTGTGCTT+GGG 0.225024 4_2:-55090802 None:intergenic
TCTTGTGCTTGGGGTTTAGA+TGG 0.255497 4_2:-55090792 None:intergenic
AAGATTTATGGAGTATTTCT+AGG 0.263070 4_2:+55096706 Msa0608090:three_prime_UTR
AGCCAAAGCATTTGCTGTTA+TGG 0.268629 4_2:+55094277 Msa0608090:CDS
GCCAAAGCATTTGCTGTTAT+GGG 0.277781 4_2:+55094278 Msa0608090:CDS
CAACCAGCCTTGCGTATCTT+AGG 0.284480 4_2:+55092559 Msa0608090:five_prime_UTR
GTCATTTGATCTTGCATCAT+AGG 0.288738 4_2:-55094197 None:intergenic
AAAATAATTCAAAACTAAAA+AGG 0.289895 4_2:-55090749 None:intergenic
TGTCGTCATAGAGAAGTTTC+TGG 0.329705 4_2:+55096348 Msa0608090:CDS
ATCGCCATGGGATTGTTTCT+TGG 0.335372 4_2:+55094161 Msa0608090:CDS
GTGATGACATGGTTTAATAT+TGG 0.335677 4_2:+55096567 Msa0608090:three_prime_UTR
CATCACAATTATTGCTCCTA+TGG 0.349749 4_2:-55096611 None:intergenic
GCACAACCCTTTCTTGTGCT+TGG 0.361116 4_2:-55090803 None:intergenic
AAATTCGCGGCCAAGACATT+TGG 0.363811 4_2:+55092696 Msa0608090:CDS
ATTGTAAGATGAAGATGAAC+AGG 0.373958 4_2:-55091492 None:intergenic
GGTGAGTGGTGACTCCCTTC+TGG 0.377215 4_2:+55090928 Msa0608090:five_prime_UTR
TCAACAGTGGGCAAACTTAT+GGG 0.406352 4_2:-55092671 None:intergenic
TGGTCCACAAGCTGCATGTA+TGG 0.406432 4_2:+55096300 Msa0608090:CDS
ATCACAAATACGTTTGTTGC+TGG 0.417420 4_2:+55094442 Msa0608090:CDS
CGCAATTGTTCCAAATGTCT+TGG 0.417847 4_2:-55092706 None:intergenic
ATACGATAGAGGGACGTGAT+AGG 0.420136 4_2:+55096452 Msa0608090:three_prime_UTR
TTATTTGTATACGATGTCAT+TGG 0.422822 4_2:+55096513 Msa0608090:three_prime_UTR
TGAATTTCAGGAGGTGGTCT+TGG 0.422853 4_2:+55094137 Msa0608090:intron
AAACTTATGGGCTGAATTTG+AGG 0.426075 4_2:-55092659 None:intergenic
CTCTCCACCGTCCTCCTCTC+CGG 0.429599 4_2:+55090904 Msa0608090:five_prime_UTR
CGGATGCATCTTCCGAACTT+AGG 0.430981 4_2:+55096536 Msa0608090:three_prime_UTR
TCACAGAGCTTTCCTAAGTT+CGG 0.438434 4_2:-55096548 None:intergenic
ATAACAACAACAAATATAAC+AGG 0.441644 4_2:-55090830 None:intergenic
GGGATTGTTTCTTGGAGCAC+TGG 0.445943 4_2:+55094169 Msa0608090:CDS
ATGAACAGGGGCGGAGAAGA+AGG 0.448089 4_2:-55091478 None:intergenic
ACCCATAACAGCAAATGCTT+TGG 0.456941 4_2:-55094279 None:intergenic
TTTGTTGCTGGATGTACTAC+TGG 0.469575 4_2:+55094454 Msa0608090:CDS
GTTTCTGGAGAGGCATCAAT+AGG 0.471586 4_2:+55096363 Msa0608090:CDS
CTAAACCCCAAGCACAAGAA+AGG 0.471626 4_2:+55090796 Msa0608090:five_prime_UTR
TCATTTGATCTTGCATCATA+GGG 0.475108 4_2:-55094196 None:intergenic
TGCTGAGTGTGTTGTTGAGA+AGG 0.481367 4_2:+55094316 Msa0608090:CDS
AGCAGATGGGGCGAAGGAGT+TGG 0.482779 4_2:+55094249 Msa0608090:CDS
CATCAATAGGTGAATTGACT+TGG 0.482794 4_2:+55096376 Msa0608090:exon
CATATCATATCTCTTTGAAA+AGG 0.485911 4_2:-55096753 None:intergenic
GGAGCTGCTATATCAGCAAA+AGG 0.495347 4_2:+55094475 Msa0608090:CDS
GAGGGACGTGATAGGGTGTA+AGG 0.500327 4_2:+55096460 Msa0608090:three_prime_UTR
GCTGTGCGCAGTGTTGTTAG+TGG 0.504131 4_2:+55092728 Msa0608090:CDS
ACAACCCTTTCTTGTGCTTG+GGG 0.513733 4_2:-55090801 None:intergenic
TATCACGTCCCTCTATCGTA+TGG 0.515830 4_2:-55096450 None:intergenic
CCCACTGTTGAGGAAATTCG+CGG 0.517714 4_2:+55092683 Msa0608090:CDS
TCCTCCTCTCCGGTGGTGAG+TGG 0.520469 4_2:+55090914 Msa0608090:five_prime_UTR
CAGTGTTGTTAGTGGAGTCA+TGG 0.521834 4_2:+55092736 Msa0608090:CDS
TTAGGTTTGTGCTTCAACAA+TGG 0.522892 4_2:+55092577 Msa0608090:exon
TACGATAGAGGGACGTGATA+GGG 0.523203 4_2:+55096453 Msa0608090:three_prime_UTR
CATAAGTTTGCCCACTGTTG+AGG 0.523867 4_2:+55092673 Msa0608090:CDS
AGGTGGTCTTGGCATCGCCA+TGG 0.525130 4_2:+55094148 Msa0608090:CDS
GGTGGTCTTGGCATCGCCAT+GGG 0.525174 4_2:+55094149 Msa0608090:CDS
TATATTTCAAGCAAAGCAGA+TGG 0.533483 4_2:+55094235 Msa0608090:CDS
TTTGTATACGATGTCATTGG+CGG 0.534029 4_2:+55096516 Msa0608090:three_prime_UTR
GCTGCATGTATGGGATGTGC+TGG 0.545754 4_2:+55096310 Msa0608090:CDS
TAAACCCCAAGCACAAGAAA+GGG 0.556283 4_2:+55090797 Msa0608090:five_prime_UTR
ACCACTCACCACCGGAGAGG+AGG 0.563407 4_2:-55090915 None:intergenic
CCGCGAATTTCCTCAACAGT+GGG 0.567028 4_2:-55092683 None:intergenic
ATATTTCAAGCAAAGCAGAT+GGG 0.571540 4_2:+55094236 Msa0608090:CDS
AAACCTAAGATACGCAAGGC+TGG 0.571606 4_2:-55092562 None:intergenic
AAGCAAAGCAGATGGGGCGA+AGG 0.583012 4_2:+55094243 Msa0608090:CDS
TCTCTTTGAAAAGGAAAACA+AGG 0.583579 4_2:-55096744 None:intergenic
AGTGTTGTTAGTGGAGTCAT+GGG 0.583699 4_2:+55092737 Msa0608090:CDS
ATCACGTCCCTCTATCGTAT+GGG 0.584693 4_2:-55096449 None:intergenic
ATGATGCAAGATCAAATGAC+TGG 0.585983 4_2:+55094200 Msa0608090:CDS
TCCACCGTCCTCCTCTCCGG+TGG 0.587465 4_2:+55090907 Msa0608090:five_prime_UTR
CATCCCATACATGCAGCTTG+TGG 0.593009 4_2:-55096304 None:intergenic
TATTTCAAGCAAAGCAGATG+GGG 0.603343 4_2:+55094237 Msa0608090:CDS
AGAGTTACTACTAACCAGAA+GGG 0.604147 4_2:-55090942 None:intergenic
TTTGAAAAGGAAAACAAGGG+TGG 0.607278 4_2:-55096740 None:intergenic
AGGAAAGCTCTGTGATGACA+TGG 0.611207 4_2:+55096556 Msa0608090:three_prime_UTR
AGGGAGTCACCACTCACCAC+CGG 0.611558 4_2:-55090923 None:intergenic
CTCTATGACGACAGAGAATG+CGG 0.617557 4_2:-55096338 None:intergenic
CTCACCACCGGAGAGGAGGA+CGG 0.618826 4_2:-55090911 None:intergenic
GCCGCGAATTTCCTCAACAG+TGG 0.623840 4_2:-55092684 None:intergenic
GGTCCACAAGCTGCATGTAT+GGG 0.631485 4_2:+55096301 Msa0608090:CDS
AACAGGGGCGGAGAAGAAGG+CGG 0.632334 4_2:-55091475 None:intergenic
TGCTCCAAGAAACAATCCCA+TGG 0.644657 4_2:-55094165 None:intergenic
TTGTAAGATGAAGATGAACA+GGG 0.655307 4_2:-55091491 None:intergenic
TCATAGAGAAGTTTCTGGAG+AGG 0.660052 4_2:+55096353 Msa0608090:CDS
GTCACCACTCACCACCGGAG+AGG 0.660867 4_2:-55090918 None:intergenic
ACCACCGGAGAGGAGGACGG+TGG 0.663796 4_2:-55090908 None:intergenic
GCACAAACCTAAGATACGCA+AGG 0.666362 4_2:-55092566 None:intergenic
CTCTTTGAAAAGGAAAACAA+GGG 0.679424 4_2:-55096743 None:intergenic
AAGATGAAGATGAACAGGGG+CGG 0.731635 4_2:-55091487 None:intergenic
TGTAAGATGAAGATGAACAG+GGG 0.755374 4_2:-55091490 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTCAAAACTAAAA+AGG - chr4_2:55090752-55090771 None:intergenic 10.0%
!!! AGTAAATATTTTTTTTGAAA+CGG + chr4_2:55091378-55091397 Msa0608090:intron 10.0%
!! TTTAAATACAATTTATTAAG+TGG - chr4_2:55092832-55092851 None:intergenic 10.0%
!! AATTATATGTTACAATTATT+TGG - chr4_2:55095231-55095250 None:intergenic 10.0%
!! TTTATTTGATGAAATTTATG+TGG + chr4_2:55091152-55091171 Msa0608090:intron 15.0%
!! TTATTTGATGAAATTTATGT+GGG + chr4_2:55091153-55091172 Msa0608090:intron 15.0%
!! AAATGAAATTGTTTATGTTA+GGG + chr4_2:55091264-55091283 Msa0608090:intron 15.0%
!!! TTTTTTTGACAGATTAATTT+AGG + chr4_2:55091332-55091351 Msa0608090:intron 15.0%
!!! TTTTTTGACAGATTAATTTA+GGG + chr4_2:55091333-55091352 Msa0608090:intron 15.0%
!!! GTAAATATTTTTTTTGAAAC+GGG + chr4_2:55091379-55091398 Msa0608090:intron 15.0%
!!! ATTATTTTGTTTGTGAAATT+AGG + chr4_2:55091677-55091696 Msa0608090:intron 15.0%
!! ATTATTATTAACACTTCATT+AGG - chr4_2:55092495-55092514 None:intergenic 15.0%
!!! TCCAAATATTTGTATAATTT+TGG + chr4_2:55092870-55092889 Msa0608090:intron 15.0%
!! ACCAAAATTATACAAATATT+TGG - chr4_2:55092874-55092893 None:intergenic 15.0%
!! TTAGACTGAATAATATTTAT+AGG + chr4_2:55095332-55095351 Msa0608090:intron 15.0%
!! AATATTTATAGGATTATCTT+AGG + chr4_2:55095343-55095362 Msa0608090:intron 15.0%
!! ATATTTATAGGATTATCTTA+GGG + chr4_2:55095344-55095363 Msa0608090:intron 15.0%
!! AAAAATAAGAATGAATTACA+AGG - chr4_2:55096684-55096703 None:intergenic 15.0%
!!! TTGTAATTCATTCTTATTTT+TGG + chr4_2:55096683-55096702 Msa0608090:three_prime_UTR 15.0%
!! ATAACAACAACAAATATAAC+AGG - chr4_2:55090833-55090852 None:intergenic 20.0%
!!! TAATTACATTTTCATGTCAT+AGG - chr4_2:55091050-55091069 None:intergenic 20.0%
!! GAAATGAAATTGTTTATGTT+AGG + chr4_2:55091263-55091282 Msa0608090:intron 20.0%
!!! TTAGTTGATATTCATACTTT+AGG + chr4_2:55091291-55091310 Msa0608090:intron 20.0%
!!! TAGTTGATATTCATACTTTA+GGG + chr4_2:55091292-55091311 Msa0608090:intron 20.0%
!! AAGCTTGAAAAATCAAATTT+GGG - chr4_2:55091554-55091573 None:intergenic 20.0%
!! AAAGCTTGAAAAATCAAATT+TGG - chr4_2:55091555-55091574 None:intergenic 20.0%
!! TTACTATACTATCATATGTT+AGG - chr4_2:55091886-55091905 None:intergenic 20.0%
!! ACATATGATAGTATAGTAAA+TGG + chr4_2:55091887-55091906 Msa0608090:intron 20.0%
!! TTTAAATGATATACAACAGA+CGG - chr4_2:55092096-55092115 None:intergenic 20.0%
!! GTATATCATTTAAACATGTT+AGG + chr4_2:55092102-55092121 Msa0608090:intron 20.0%
!! AAAACAATAGATAGAGAAAA+AGG + chr4_2:55093758-55093777 Msa0608090:intron 20.0%
!!! AGATACTTATATAACTTTTG+AGG - chr4_2:55093938-55093957 None:intergenic 20.0%
!!! ATTTTACGAAATAAATCGAA+TGG + chr4_2:55093967-55093986 Msa0608090:intron 20.0%
!! TTGTAAAATGATTGTTTGTT+CGG + chr4_2:55094104-55094123 Msa0608090:intron 20.0%
!!! AGCTAAAAATTTAGTTTCAA+TGG - chr4_2:55094713-55094732 None:intergenic 20.0%
!! TCTCATTTATAAGAAAAATC+TGG - chr4_2:55094860-55094879 None:intergenic 20.0%
!! TATTTATAGGATTATCTTAG+GGG + chr4_2:55095345-55095364 Msa0608090:intron 20.0%
!!! ATAGAAAACAACTTTGAAAA+GGG - chr4_2:55095900-55095919 None:intergenic 20.0%
!!! AATAGAAAACAACTTTGAAA+AGG - chr4_2:55095901-55095920 None:intergenic 20.0%
!!! TCTTATTTTTGGAAGATTTA+TGG + chr4_2:55096694-55096713 Msa0608090:three_prime_UTR 20.0%
!! ATTTTCATGTCATAGGTTTT+AGG - chr4_2:55091043-55091062 None:intergenic 25.0%
!! ATACTTTAGGGACTTAATTT+AGG + chr4_2:55091304-55091323 Msa0608090:intron 25.0%
!! TACTTTAGGGACTTAATTTA+GGG + chr4_2:55091305-55091324 Msa0608090:intron 25.0%
!!! AAAATGAAGTTTGTTAGTGA+GGG - chr4_2:55091423-55091442 None:intergenic 25.0%
! TGGGTAAAAATAGAGAAAAT+GGG - chr4_2:55091535-55091554 None:intergenic 25.0%
! TTGGGTAAAAATAGAGAAAA+TGG - chr4_2:55091536-55091555 None:intergenic 25.0%
! AAAAAGTTTCATATCCCATA+AGG + chr4_2:55091581-55091600 Msa0608090:intron 25.0%
! TTATAATGACAACACCTTAT+GGG - chr4_2:55091598-55091617 None:intergenic 25.0%
! TAGTACAATAAGTGACAAAA+TGG + chr4_2:55091780-55091799 Msa0608090:intron 25.0%
! TTTACAAAACTTATGTCAGT+AGG + chr4_2:55091916-55091935 Msa0608090:intron 25.0%
! AAGAAAAAAAGGCAATAATC+TGG - chr4_2:55091979-55091998 None:intergenic 25.0%
! TGTGTTTCGTTAAGAAAAAA+AGG - chr4_2:55091990-55092009 None:intergenic 25.0%
! AGTAGCAAATAAATGTTGTA+AGG - chr4_2:55092233-55092252 None:intergenic 25.0%
!! ATGAGTCAAATCAAATTTTC+CGG - chr4_2:55092440-55092459 None:intergenic 25.0%
! ATAAGATGCTAACAGATATT+TGG - chr4_2:55092805-55092824 None:intergenic 25.0%
!! ATTATACAAATATTTGGAGC+AGG - chr4_2:55092868-55092887 None:intergenic 25.0%
! TTTGGAAATGGATAAATGAT+AGG + chr4_2:55093168-55093187 Msa0608090:intron 25.0%
!! TTCTTTTTCTCTCTTCTTAT+TGG + chr4_2:55093732-55093751 Msa0608090:intron 25.0%
! TGTACAAATATCATTTCACT+TGG + chr4_2:55093846-55093865 Msa0608090:intron 25.0%
!!! TCCTTTTTTCTTTTCTTTTC+AGG + chr4_2:55094402-55094421 Msa0608090:intron 25.0%
! CAGAAAACAAATGAAAAAGA+GGG - chr4_2:55094504-55094523 None:intergenic 25.0%
! ACAGAAAACAAATGAAAAAG+AGG - chr4_2:55094505-55094524 None:intergenic 25.0%
! AACCTGTATTTAAGTAATGA+TGG + chr4_2:55094551-55094570 Msa0608090:intron 25.0%
! TAAATGATAGAGTATACTTC+TGG + chr4_2:55094732-55094751 Msa0608090:intron 25.0%
!! GCATTTTGTATCTGAAAAAT+TGG - chr4_2:55094980-55094999 None:intergenic 25.0%
!! AAAATGCCAAGTTTTTAACA+AGG + chr4_2:55094993-55095012 Msa0608090:intron 25.0%
! TTCAAACCTTGTTAAAAACT+TGG - chr4_2:55095002-55095021 None:intergenic 25.0%
! ACAATCTTAATTGCAAGATT+GGG - chr4_2:55095104-55095123 None:intergenic 25.0%
! AACAATCTTAATTGCAAGAT+TGG - chr4_2:55095105-55095124 None:intergenic 25.0%
! TATGTTACAATTATTTGGCA+AGG - chr4_2:55095226-55095245 None:intergenic 25.0%
!! CAAAATTAAAGTGTTTGTCA+TGG + chr4_2:55095268-55095287 Msa0608090:intron 25.0%
! ATTTATAGGATTATCTTAGG+GGG + chr4_2:55095346-55095365 Msa0608090:intron 25.0%
!! AAAGCTTGATTTTCTCTTTT+AGG + chr4_2:55095373-55095392 Msa0608090:intron 25.0%
!! CTAACAATAACTTCTGTTTT+GGG - chr4_2:55095862-55095881 None:intergenic 25.0%
!! TCTAACAATAACTTCTGTTT+TGG - chr4_2:55095863-55095882 None:intergenic 25.0%
!! CAATTGTGTATTCTGATTTT+TGG - chr4_2:55095953-55095972 None:intergenic 25.0%
! TTATTTGTATACGATGTCAT+TGG + chr4_2:55096513-55096532 Msa0608090:three_prime_UTR 25.0%
! ACAAGTATTACAAAAACCAT+AGG + chr4_2:55096595-55096614 Msa0608090:three_prime_UTR 25.0%
!! AAGATTTATGGAGTATTTCT+AGG + chr4_2:55096706-55096725 Msa0608090:three_prime_UTR 25.0%
!! CATATCATATCTCTTTGAAA+AGG - chr4_2:55096756-55096775 None:intergenic 25.0%
!! GTTTAGATGGATTTTGAAAG+GGG - chr4_2:55090782-55090801 None:intergenic 30.0%
!! GGTTTAGATGGATTTTGAAA+GGG - chr4_2:55090783-55090802 None:intergenic 30.0%
ACAAAAGAGTAGTGAATCAA+AGG - chr4_2:55090991-55091010 None:intergenic 30.0%
!!! ATGTCATAGGTTTTAGGTAT+TGG - chr4_2:55091037-55091056 None:intergenic 30.0%
!! GAAAATGAAGTTTGTTAGTG+AGG - chr4_2:55091424-55091443 None:intergenic 30.0%
TTGTAAGATGAAGATGAACA+GGG - chr4_2:55091494-55091513 None:intergenic 30.0%
ATTGTAAGATGAAGATGAAC+AGG - chr4_2:55091495-55091514 None:intergenic 30.0%
GTTATAATGACAACACCTTA+TGG - chr4_2:55091599-55091618 None:intergenic 30.0%
! TTCATCTATCTAAAGCTAAC+AGG - chr4_2:55091630-55091649 None:intergenic 30.0%
! TTTAGTGCAGCTTTTCAAAT+TGG + chr4_2:55091720-55091739 Msa0608090:intron 30.0%
! TTAGTGCAGCTTTTCAAATT+GGG + chr4_2:55091721-55091740 Msa0608090:intron 30.0%
! TGTCACTTATTGTACTACAT+GGG - chr4_2:55091777-55091796 None:intergenic 30.0%
! TTGTCACTTATTGTACTACA+TGG - chr4_2:55091778-55091797 None:intergenic 30.0%
TGTTTAACAAACTGGACTTT+CGG - chr4_2:55091833-55091852 None:intergenic 30.0%
!! AAAGTCCAGTTTGTTAAACA+CGG + chr4_2:55091833-55091852 Msa0608090:intron 30.0%
AAACATGTTAGGTATGAAGT+AGG + chr4_2:55092113-55092132 Msa0608090:intron 30.0%
GTAACATCTAGTGATAGATA+AGG - chr4_2:55092394-55092413 None:intergenic 30.0%
! TGAGTCAAATCAAATTTTCC+GGG - chr4_2:55092439-55092458 None:intergenic 30.0%
AAAATCTGTGCAATGAACAA+TGG - chr4_2:55092524-55092543 None:intergenic 30.0%
CTAACAGATATTTGGAAATC+CGG - chr4_2:55092797-55092816 None:intergenic 30.0%
!!! TCGGTTTGGAGTAAAATTTT+GGG + chr4_2:55093032-55093051 Msa0608090:intron 30.0%
!! TTTGGAGTAAAATTTTGGGT+TGG + chr4_2:55093036-55093055 Msa0608090:intron 30.0%
TCTAAATGCACAGACAAATT+TGG - chr4_2:55093072-55093091 None:intergenic 30.0%
TGTCTGTGCATTTAGATTAT+TGG + chr4_2:55093076-55093095 Msa0608090:intron 30.0%
CAATTTGGGTAATTTGGAAA+TGG + chr4_2:55093156-55093175 Msa0608090:intron 30.0%
AAATGCGATTGATGAAATTG+TGG + chr4_2:55093208-55093227 Msa0608090:intron 30.0%
CTTGTATTATGAATGGTGTT+GGG + chr4_2:55093289-55093308 Msa0608090:intron 30.0%
! AGTAGGTAGTTTTTGTCAAT+GGG + chr4_2:55093329-55093348 Msa0608090:intron 30.0%
TCACAAAAGTTGTCATCAAA+TGG - chr4_2:55093707-55093726 None:intergenic 30.0%
ATAGAGAAAAAGGAAGAAAG+AGG + chr4_2:55093768-55093787 Msa0608090:intron 30.0%
TGTCAAAAGTTGTCACAAAA+TGG + chr4_2:55093822-55093841 Msa0608090:intron 30.0%
ACAAATATCATTTCACTTGG+TGG + chr4_2:55093849-55093868 Msa0608090:intron 30.0%
!! TATATAACTTTTGAGGAGCA+AGG - chr4_2:55093931-55093950 None:intergenic 30.0%
TGGGAAATATCAAATGTCAT+TGG + chr4_2:55094035-55094054 Msa0608090:intron 30.0%
TCATTTGATCTTGCATCATA+GGG - chr4_2:55094199-55094218 None:intergenic 30.0%
TATATTTCAAGCAAAGCAGA+TGG + chr4_2:55094235-55094254 Msa0608090:CDS 30.0%
ATATTTCAAGCAAAGCAGAT+GGG + chr4_2:55094236-55094255 Msa0608090:CDS 30.0%
!! TTGAGAAGGTTTAATGGATT+TGG + chr4_2:55094330-55094349 Msa0608090:intron 30.0%
!! TGAGAAGGTTTAATGGATTT+GGG + chr4_2:55094331-55094350 Msa0608090:intron 30.0%
GCCTGAAAAGAAAAGAAAAA+AGG - chr4_2:55094406-55094425 None:intergenic 30.0%
! CTCTATGCTGTAATTTTGTT+TGG + chr4_2:55094771-55094790 Msa0608090:intron 30.0%
GAGTCAAGATTGTTAATCAT+CGG + chr4_2:55094884-55094903 Msa0608090:intron 30.0%
!! TTAATCATCGGTTCATAACA+TGG + chr4_2:55094896-55094915 Msa0608090:intron 30.0%
! GGTTTCTTCATATGGTTTTT+GGG + chr4_2:55095297-55095316 Msa0608090:intron 30.0%
TTTATAGGATTATCTTAGGG+GGG + chr4_2:55095347-55095366 Msa0608090:intron 30.0%
!! TTTTAGGAGACATCTTTGTT+GGG + chr4_2:55095389-55095408 Msa0608090:intron 30.0%
!! TCATGACTTTTAAAGAGTCA+AGG + chr4_2:55095577-55095596 Msa0608090:intron 30.0%
! TTTTCAGTAACACCTTAGTA+AGG - chr4_2:55095628-55095647 None:intergenic 30.0%
AATACTAGGATACTACATCA+AGG - chr4_2:55095651-55095670 None:intergenic 30.0%
ATTTATTGCCTCTCAATACT+AGG - chr4_2:55095665-55095684 None:intergenic 30.0%
! AAATGTTAGTGCCTTAGTTT+TGG + chr4_2:55095691-55095710 Msa0608090:intron 30.0%
TTGAGCACTAAATCCATATT+GGG - chr4_2:55096014-55096033 None:intergenic 30.0%
ATTGAGCACTAAATCCATAT+TGG - chr4_2:55096015-55096034 None:intergenic 30.0%
AACGCAAATTGATGTAAAAG+AGG + chr4_2:55096133-55096152 Msa0608090:intron 30.0%
TAATGTTTCCAATGTTTGTG+TGG + chr4_2:55096270-55096289 Msa0608090:intron 30.0%
GTGATGACATGGTTTAATAT+TGG + chr4_2:55096567-55096586 Msa0608090:three_prime_UTR 30.0%
! CTCTTTGAAAAGGAAAACAA+GGG - chr4_2:55096746-55096765 None:intergenic 30.0%
! TCTCTTTGAAAAGGAAAACA+AGG - chr4_2:55096747-55096766 None:intergenic 30.0%
!! GGGTTTAGATGGATTTTGAA+AGG - chr4_2:55090784-55090803 None:intergenic 35.0%
AGAGTTACTACTAACCAGAA+GGG - chr4_2:55090945-55090964 None:intergenic 35.0%
TAGAGTTACTACTAACCAGA+AGG - chr4_2:55090946-55090965 None:intergenic 35.0%
!!! GTTTTAGGTATTGGACATTG+TGG - chr4_2:55091028-55091047 None:intergenic 35.0%
AGAATGAGTCTGACATAAAG+TGG + chr4_2:55091187-55091206 Msa0608090:intron 35.0%
TGTAAGATGAAGATGAACAG+GGG - chr4_2:55091493-55091512 None:intergenic 35.0%
GTTTAACAAACTGGACTTTC+GGG - chr4_2:55091832-55091851 None:intergenic 35.0%
ATTGTCCGTGTTTAACAAAC+TGG - chr4_2:55091841-55091860 None:intergenic 35.0%
!! AGTGAATGGCTTTGAAGATT+GGG - chr4_2:55092034-55092053 None:intergenic 35.0%
!! TAGTGAATGGCTTTGAAGAT+TGG - chr4_2:55092035-55092054 None:intergenic 35.0%
GTATATCACTCAAACGTGTT+AGG + chr4_2:55092172-55092191 Msa0608090:intron 35.0%
! TGCGCTACTTTGGTATAAAT+GGG - chr4_2:55092281-55092300 None:intergenic 35.0%
! TTGCGCTACTTTGGTATAAA+TGG - chr4_2:55092282-55092301 None:intergenic 35.0%
! TGTTCATTGCACAGATTTTG+TGG + chr4_2:55092525-55092544 Msa0608090:intron 35.0%
TTAGGTTTGTGCTTCAACAA+TGG + chr4_2:55092577-55092596 Msa0608090:exon 35.0%
! AAACTTATGGGCTGAATTTG+AGG - chr4_2:55092662-55092681 None:intergenic 35.0%
AACCCTCACTTTCTTTATTC+CGG + chr4_2:55092775-55092794 Msa0608090:intron 35.0%
ATCCGGAATAAAGAAAGTGA+GGG - chr4_2:55092780-55092799 None:intergenic 35.0%
AATCCGGAATAAAGAAAGTG+AGG - chr4_2:55092781-55092800 None:intergenic 35.0%
! CAAAATTTTACTCCAAACCG+AGG - chr4_2:55093033-55093052 None:intergenic 35.0%
!!! CTCGGTTTGGAGTAAAATTT+TGG + chr4_2:55093031-55093050 Msa0608090:intron 35.0%
GTGCATTTAGATTATTGGAG+CGG + chr4_2:55093081-55093100 Msa0608090:intron 35.0%
GCGGATACAAAATTACCAAA+GGG + chr4_2:55093111-55093130 Msa0608090:intron 35.0%
CGGATACAAAATTACCAAAG+GGG + chr4_2:55093112-55093131 Msa0608090:intron 35.0%
ACAAAATTACCAAAGGGGTT+TGG + chr4_2:55093117-55093136 Msa0608090:intron 35.0%
TAATTTGGCATGCGACAATT+TGG + chr4_2:55093141-55093160 Msa0608090:intron 35.0%
AATTTGGCATGCGACAATTT+GGG + chr4_2:55093142-55093161 Msa0608090:intron 35.0%
ATGCGACAATTTGGGTAATT+TGG + chr4_2:55093150-55093169 Msa0608090:intron 35.0%
TGAAATTGTGGAGGAGATTA+AGG + chr4_2:55093220-55093239 Msa0608090:intron 35.0%
CATTCATAATACAAGCAAGG+CGG - chr4_2:55093284-55093303 None:intergenic 35.0%
CACCATTCATAATACAAGCA+AGG - chr4_2:55093287-55093306 None:intergenic 35.0%
GCTTGTATTATGAATGGTGT+TGG + chr4_2:55093288-55093307 Msa0608090:intron 35.0%
! GAGTAGGTAGTTTTTGTCAA+TGG + chr4_2:55093328-55093347 Msa0608090:intron 35.0%
! GTAGGTAGTTTTTGTCAATG+GGG + chr4_2:55093330-55093349 Msa0608090:intron 35.0%
! GTTTTTGTCAATGGGGTTTT+CGG + chr4_2:55093337-55093356 Msa0608090:intron 35.0%
! TTTTTGTCAATGGGGTTTTC+GGG + chr4_2:55093338-55093357 Msa0608090:intron 35.0%
!! CAGGCGGATTATGAATAAAT+TGG + chr4_2:55093596-55093615 Msa0608090:intron 35.0%
GTGTCTATGAATGAGACTTT+AGG + chr4_2:55093657-55093676 Msa0608090:intron 35.0%
! AATATCATTTCACTTGGTGG+TGG + chr4_2:55093852-55093871 Msa0608090:intron 35.0%
TGTCAACATAGCTGAATTAC+TGG + chr4_2:55094015-55094034 Msa0608090:intron 35.0%
GTCAACATAGCTGAATTACT+GGG + chr4_2:55094016-55094035 Msa0608090:intron 35.0%
GGATTCATGTGATGAATTTC+AGG + chr4_2:55094125-55094144 Msa0608090:intron 35.0%
TTCATGTGATGAATTTCAGG+AGG + chr4_2:55094128-55094147 Msa0608090:intron 35.0%
GTCATTTGATCTTGCATCAT+AGG - chr4_2:55094200-55094219 None:intergenic 35.0%
ATGATGCAAGATCAAATGAC+TGG + chr4_2:55094200-55094219 Msa0608090:CDS 35.0%
TATTTCAAGCAAAGCAGATG+GGG + chr4_2:55094237-55094256 Msa0608090:CDS 35.0%
! GTGTTGTTGAGAAGGTTTAA+TGG + chr4_2:55094324-55094343 Msa0608090:intron 35.0%
! ATCACAAATACGTTTGTTGC+TGG + chr4_2:55094442-55094461 Msa0608090:CDS 35.0%
GGCCATCATTACTTAAATAC+AGG - chr4_2:55094556-55094575 None:intergenic 35.0%
!!! TTCAGCACTGGTTTTTTACA+AGG - chr4_2:55094625-55094644 None:intergenic 35.0%
!!! CCTAAGGTTTGCTTTTTCTT+GGG + chr4_2:55094662-55094681 Msa0608090:intron 35.0%
!!! TTGCTTTTTCTTGGGTAGTT+AGG + chr4_2:55094670-55094689 Msa0608090:intron 35.0%
! CTTTTGCATATGTGTGAACA+CGG - chr4_2:55094951-55094970 None:intergenic 35.0%
!!! GGATTGGCAAATATTTTGGT+GGG - chr4_2:55095080-55095099 None:intergenic 35.0%
!! AGGATTGGCAAATATTTTGG+TGG - chr4_2:55095081-55095100 None:intergenic 35.0%
ATCTTAATTGCAAGATTGGG+AGG - chr4_2:55095101-55095120 None:intergenic 35.0%
! TTAAAGTGTTTGTCATGGTG+TGG + chr4_2:55095273-55095292 Msa0608090:intron 35.0%
! TAAAGTGTTTGTCATGGTGT+GGG + chr4_2:55095274-55095293 Msa0608090:intron 35.0%
! GGGTTTCTTCATATGGTTTT+TGG + chr4_2:55095296-55095315 Msa0608090:intron 35.0%
!! TCTTCATATGGTTTTTGGGA+TGG + chr4_2:55095301-55095320 Msa0608090:intron 35.0%
!! CTTTTAGGAGACATCTTTGT+TGG + chr4_2:55095388-55095407 Msa0608090:intron 35.0%
TTTGTTGGGCATAAAATGCA+TGG + chr4_2:55095403-55095422 Msa0608090:intron 35.0%
CATAAAATGCATGGCAACAA+AGG + chr4_2:55095412-55095431 Msa0608090:intron 35.0%
CTCAAGGAGATAGTAAGTAA+TGG + chr4_2:55095469-55095488 Msa0608090:intron 35.0%
GAGATAGTAAGTAATGGTGA+TGG + chr4_2:55095475-55095494 Msa0608090:intron 35.0%
! TGTAGTATCCTAGTATTGAG+AGG + chr4_2:55095654-55095673 Msa0608090:intron 35.0%
! CTAAGGCACTAACATTTCAA+TGG - chr4_2:55095688-55095707 None:intergenic 35.0%
TAGTCCATTCTCCAAAACTA+AGG - chr4_2:55095705-55095724 None:intergenic 35.0%
ACAACTTTCTTCTGCAATGA+GGG - chr4_2:55096091-55096110 None:intergenic 35.0%
AGAAGAAAGTTGTGCTTTGT+AGG + chr4_2:55096098-55096117 Msa0608090:intron 35.0%
GGAGAAAAGAAACAGTAATC+AGG + chr4_2:55096154-55096173 Msa0608090:intron 35.0%
! TCGTTTTCCAGTTCATTATC+TGG - chr4_2:55096180-55096199 None:intergenic 35.0%
CATCAATAGGTGAATTGACT+TGG + chr4_2:55096376-55096395 Msa0608090:exon 35.0%
! ATATTTTGCCCATACGATAG+AGG + chr4_2:55096441-55096460 Msa0608090:three_prime_UTR 35.0%
! TATTTTGCCCATACGATAGA+GGG + chr4_2:55096442-55096461 Msa0608090:three_prime_UTR 35.0%
TTTGTATACGATGTCATTGG+CGG + chr4_2:55096516-55096535 Msa0608090:three_prime_UTR 35.0%
CATCACAATTATTGCTCCTA+TGG - chr4_2:55096614-55096633 None:intergenic 35.0%
TTTGAAAAGGAAAACAAGGG+TGG - chr4_2:55096743-55096762 None:intergenic 35.0%
TAAACCCCAAGCACAAGAAA+GGG + chr4_2:55090797-55090816 Msa0608090:five_prime_UTR 40.0%
AGAGGATTAGGACATAGTGA+AGG - chr4_2:55091446-55091465 None:intergenic 40.0%
GAAAAAACATCTGGGAAGCT+CGG - chr4_2:55091752-55091771 None:intergenic 40.0%
CATGGGTCGAAAAAACATCT+GGG - chr4_2:55091760-55091779 None:intergenic 40.0%
ACATGGGTCGAAAAAACATC+TGG - chr4_2:55091761-55091780 None:intergenic 40.0%
AAACACGGACAATAAGCTAG+TGG + chr4_2:55091848-55091867 Msa0608090:intron 40.0%
CTCGGTTAGTGATTAGTGAA+TGG - chr4_2:55092048-55092067 None:intergenic 40.0%
CAACAGACGGAAACAAATGA+AGG - chr4_2:55092083-55092102 None:intergenic 40.0%
ATCACTCAAACGTGTTAGGT+AGG + chr4_2:55092176-55092195 Msa0608090:intron 40.0%
TCAACAGTGGGCAAACTTAT+GGG - chr4_2:55092674-55092693 None:intergenic 40.0%
CGCAATTGTTCCAAATGTCT+TGG - chr4_2:55092709-55092728 None:intergenic 40.0%
! AGTGTTGTTAGTGGAGTCAT+GGG + chr4_2:55092737-55092756 Msa0608090:CDS 40.0%
CGCGGATACAAAATTACCAA+AGG + chr4_2:55093110-55093129 Msa0608090:intron 40.0%
TGCGATTGATGAAATTGTGG+AGG + chr4_2:55093211-55093230 Msa0608090:intron 40.0%
CGCCTTGCTTGTATTATGAA+TGG + chr4_2:55093282-55093301 Msa0608090:intron 40.0%
TTTGCTGCCATGGTTGTTTA+CGG + chr4_2:55093361-55093380 Msa0608090:intron 40.0%
! CAGCTCCCTCTAGTTTATAT+GGG + chr4_2:55093415-55093434 Msa0608090:intron 40.0%
GCAGACCCATATAAACTAGA+GGG - chr4_2:55093423-55093442 None:intergenic 40.0%
AGCAGACCCATATAAACTAG+AGG - chr4_2:55093424-55093443 None:intergenic 40.0%
TTTATATGGGTCTGCTGTTC+TGG + chr4_2:55093428-55093447 Msa0608090:intron 40.0%
!!! TTCTGGTTTTAGGTCTGGTT+GGG + chr4_2:55093445-55093464 Msa0608090:intron 40.0%
TTGAGTCCTCCACCTAAATA+CGG + chr4_2:55093517-55093536 Msa0608090:intron 40.0%
! GTATAGTGTTGTTCCAACTG+AGG - chr4_2:55093890-55093909 None:intergenic 40.0%
AGAGACATTGCAAGTTGTTG+AGG + chr4_2:55094075-55094094 Msa0608090:intron 40.0%
ATGTGATGAATTTCAGGAGG+TGG + chr4_2:55094131-55094150 Msa0608090:intron 40.0%
!! AGCCAAAGCATTTGCTGTTA+TGG + chr4_2:55094277-55094296 Msa0608090:CDS 40.0%
!! GCCAAAGCATTTGCTGTTAT+GGG + chr4_2:55094278-55094297 Msa0608090:CDS 40.0%
ACCCATAACAGCAAATGCTT+TGG - chr4_2:55094282-55094301 None:intergenic 40.0%
TTTGTTGCTGGATGTACTAC+TGG + chr4_2:55094454-55094473 Msa0608090:CDS 40.0%
TAAGTAATGATGGCCAGACA+TGG + chr4_2:55094561-55094580 Msa0608090:intron 40.0%
ATTATGCTCCTACACCTCAT+GGG - chr4_2:55094599-55094618 None:intergenic 40.0%
AATTATGCTCCTACACCTCA+TGG - chr4_2:55094600-55094619 None:intergenic 40.0%
!!! GCCTAAGGTTTGCTTTTTCT+TGG + chr4_2:55094661-55094680 Msa0608090:intron 40.0%
CCCAAGAAAAAGCAAACCTT+AGG - chr4_2:55094665-55094684 None:intergenic 40.0%
CGTGTTCACACATATGCAAA+AGG + chr4_2:55094949-55094968 Msa0608090:intron 40.0%
!! GGGAGGATTGGCAAATATTT+TGG - chr4_2:55095084-55095103 None:intergenic 40.0%
AATTGCAAGATTGGGAGGAT+TGG - chr4_2:55095096-55095115 None:intergenic 40.0%
ATTGCGGTTCTGTCTGTTAT+TGG + chr4_2:55095146-55095165 Msa0608090:intron 40.0%
TTGCGGTTCTGTCTGTTATT+GGG + chr4_2:55095147-55095166 Msa0608090:intron 40.0%
AAGTAAGATCCTTGACGACT+TGG - chr4_2:55095178-55095197 None:intergenic 40.0%
! AAAGTGTTTGTCATGGTGTG+GGG + chr4_2:55095275-55095294 Msa0608090:intron 40.0%
GTCTTTGTAGTGCATACTCA+AGG + chr4_2:55095453-55095472 Msa0608090:intron 40.0%
!! AAGCATTGGTAATCATGAGC+CGG + chr4_2:55095511-55095530 Msa0608090:intron 40.0%
GTTGAACTGCATTCACAACA+GGG + chr4_2:55095599-55095618 Msa0608090:intron 40.0%
!!! AGTGCCTTAGTTTTGGAGAA+TGG + chr4_2:55095698-55095717 Msa0608090:intron 40.0%
CACAAAGTGATGTTCATCCA+GGG + chr4_2:55095780-55095799 Msa0608090:intron 40.0%
CTAGAAGGTTTCTGTCTTTG+TGG + chr4_2:55095808-55095827 Msa0608090:intron 40.0%
AACCGCAAGTTCTCAAATCA+TGG + chr4_2:55095974-55095993 Msa0608090:intron 40.0%
ACCGCAAGTTCTCAAATCAT+GGG + chr4_2:55095975-55095994 Msa0608090:intron 40.0%
CACAACTTTCTTCTGCAATG+AGG - chr4_2:55096092-55096111 None:intergenic 40.0%
AATCAGGCCAGATAATGAAC+TGG + chr4_2:55096170-55096189 Msa0608090:intron 40.0%
TCCAATGTTTGTGTGGTTGT+AGG + chr4_2:55096277-55096296 Msa0608090:intron 40.0%
ACCTACAACCACACAAACAT+TGG - chr4_2:55096281-55096300 None:intergenic 40.0%
AATGTTTGTGTGGTTGTAGG+TGG + chr4_2:55096280-55096299 Msa0608090:intron 40.0%
TGTCGTCATAGAGAAGTTTC+TGG + chr4_2:55096348-55096367 Msa0608090:CDS 40.0%
! TCATAGAGAAGTTTCTGGAG+AGG + chr4_2:55096353-55096372 Msa0608090:CDS 40.0%
TCACAGAGCTTTCCTAAGTT+CGG - chr4_2:55096551-55096570 None:intergenic 40.0%
TCTTGTGCTTGGGGTTTAGA+TGG - chr4_2:55090795-55090814 None:intergenic 45.0%
CTAAACCCCAAGCACAAGAA+AGG + chr4_2:55090796-55090815 Msa0608090:five_prime_UTR 45.0%
ACAACCCTTTCTTGTGCTTG+GGG - chr4_2:55090804-55090823 None:intergenic 45.0%
CACAACCCTTTCTTGTGCTT+GGG - chr4_2:55090805-55090824 None:intergenic 45.0%
!! GAAGTTTGTTAGTGAGGGAC+AGG - chr4_2:55091418-55091437 None:intergenic 45.0%
AAGATGAAGATGAACAGGGG+CGG - chr4_2:55091490-55091509 None:intergenic 45.0%
TAATCTGGTGTGTGTGGCTA+CGG - chr4_2:55091964-55091983 None:intergenic 45.0%
AGGCAATAATCTGGTGTGTG+TGG - chr4_2:55091970-55091989 None:intergenic 45.0%
ACTAATCACTAACCGAGCTG+AGG + chr4_2:55092051-55092070 Msa0608090:intron 45.0%
CTAATCACTAACCGAGCTGA+GGG + chr4_2:55092052-55092071 Msa0608090:intron 45.0%
CCTTGTGTATTGCGCTACTT+TGG - chr4_2:55092291-55092310 None:intergenic 45.0%
CCAAAGTAGCGCAATACACA+AGG + chr4_2:55092288-55092307 Msa0608090:intron 45.0%
TATGTATCCAATCACGTGCC+CGG + chr4_2:55092418-55092437 Msa0608090:intron 45.0%
! AAATTTTCCGGGCACGTGAT+TGG - chr4_2:55092428-55092447 None:intergenic 45.0%
AAACCTAAGATACGCAAGGC+TGG - chr4_2:55092565-55092584 None:intergenic 45.0%
GCACAAACCTAAGATACGCA+AGG - chr4_2:55092569-55092588 None:intergenic 45.0%
CTCAACAGTGGGCAAACTTA+TGG - chr4_2:55092675-55092694 None:intergenic 45.0%
CATAAGTTTGCCCACTGTTG+AGG + chr4_2:55092673-55092692 Msa0608090:CDS 45.0%
AAATTCGCGGCCAAGACATT+TGG + chr4_2:55092696-55092715 Msa0608090:CDS 45.0%
! CAGTGTTGTTAGTGGAGTCA+TGG + chr4_2:55092736-55092755 Msa0608090:CDS 45.0%
!! ACATTGCCCTTTTTCGTCCT+CGG + chr4_2:55093013-55093032 Msa0608090:intron 45.0%
TCCAAACCGAGGACGAAAAA+GGG - chr4_2:55093022-55093041 None:intergenic 45.0%
CCAAATTAGCCAAACCCCTT+TGG - chr4_2:55093129-55093148 None:intergenic 45.0%
CCAAAGGGGTTTGGCTAATT+TGG + chr4_2:55093126-55093145 Msa0608090:intron 45.0%
TTGCTGCCATGGTTGTTTAC+GGG + chr4_2:55093362-55093381 Msa0608090:intron 45.0%
! GCAGCTCCCTCTAGTTTATA+TGG + chr4_2:55093414-55093433 Msa0608090:intron 45.0%
!!! TGCTGTTCTGGTTTTAGGTC+TGG + chr4_2:55093440-55093459 Msa0608090:intron 45.0%
!!! GTTCTGGTTTTAGGTCTGGT+TGG + chr4_2:55093444-55093463 Msa0608090:intron 45.0%
! AAACGAGCACCGTATTTAGG+TGG - chr4_2:55093529-55093548 None:intergenic 45.0%
! CCAAAACGAGCACCGTATTT+AGG - chr4_2:55093532-55093551 None:intergenic 45.0%
! CCTAAATACGGTGCTCGTTT+TGG + chr4_2:55093529-55093548 Msa0608090:intron 45.0%
!! ATTTCACTTGGTGGTGGTTG+TGG + chr4_2:55093858-55093877 Msa0608090:intron 45.0%
GTTGTGGTTGTAACCTCAGT+TGG + chr4_2:55093874-55093893 Msa0608090:intron 45.0%
TGAATTTCAGGAGGTGGTCT+TGG + chr4_2:55094137-55094156 Msa0608090:intron 45.0%
! ATCGCCATGGGATTGTTTCT+TGG + chr4_2:55094161-55094180 Msa0608090:CDS 45.0%
TGCTCCAAGAAACAATCCCA+TGG - chr4_2:55094168-55094187 None:intergenic 45.0%
! TGCTGAGTGTGTTGTTGAGA+AGG + chr4_2:55094316-55094335 Msa0608090:CDS 45.0%
GGAGCTGCTATATCAGCAAA+AGG + chr4_2:55094475-55094494 Msa0608090:CDS 45.0%
! AACCTTAGGCTAGTCACTTC+TGG - chr4_2:55094651-55094670 None:intergenic 45.0%
GCAATCTGGTAGGATTGTGT+GGG - chr4_2:55095131-55095150 None:intergenic 45.0%
CACACAATCCTACCAGATTG+CGG + chr4_2:55095130-55095149 Msa0608090:intron 45.0%
TAACAGACAGAACCGCAATC+TGG - chr4_2:55095145-55095164 None:intergenic 45.0%
TGGGATAATCCAAGTCGTCA+AGG + chr4_2:55095166-55095185 Msa0608090:intron 45.0%
AAGTGTTTGTCATGGTGTGG+GGG + chr4_2:55095276-55095295 Msa0608090:intron 45.0%
!! AGCATTGGTAATCATGAGCC+GGG + chr4_2:55095512-55095531 Msa0608090:intron 45.0%
TTCTCTCTTCCAGTCTTCCA+GGG - chr4_2:55095551-55095570 None:intergenic 45.0%
ATTCTCTCTTCCAGTCTTCC+AGG - chr4_2:55095552-55095571 None:intergenic 45.0%
GGTTGAACTGCATTCACAAC+AGG + chr4_2:55095598-55095617 Msa0608090:intron 45.0%
ACAACAGGGACTCCTTACTA+AGG + chr4_2:55095613-55095632 Msa0608090:intron 45.0%
GCACAAAGTGATGTTCATCC+AGG + chr4_2:55095779-55095798 Msa0608090:intron 45.0%
GAAGGTTTCTGTCTTTGTGG+TGG + chr4_2:55095811-55095830 Msa0608090:intron 45.0%
CCCCATGATTTGAGAACTTG+CGG - chr4_2:55095979-55095998 None:intergenic 45.0%
CCGCAAGTTCTCAAATCATG+GGG + chr4_2:55095976-55095995 Msa0608090:intron 45.0%
! AAATCATGGGGTTCTGACAG+TGG + chr4_2:55095988-55096007 Msa0608090:intron 45.0%
CTCTATGACGACAGAGAATG+CGG - chr4_2:55096341-55096360 None:intergenic 45.0%
!! GTTTCTGGAGAGGCATCAAT+AGG + chr4_2:55096363-55096382 Msa0608090:CDS 45.0%
ATCACGTCCCTCTATCGTAT+GGG - chr4_2:55096452-55096471 None:intergenic 45.0%
TATCACGTCCCTCTATCGTA+TGG - chr4_2:55096453-55096472 None:intergenic 45.0%
ATACGATAGAGGGACGTGAT+AGG + chr4_2:55096452-55096471 Msa0608090:three_prime_UTR 45.0%
TACGATAGAGGGACGTGATA+GGG + chr4_2:55096453-55096472 Msa0608090:three_prime_UTR 45.0%
AGGAAAGCTCTGTGATGACA+TGG + chr4_2:55096556-55096575 Msa0608090:three_prime_UTR 45.0%
GCACAACCCTTTCTTGTGCT+TGG - chr4_2:55090806-55090825 None:intergenic 50.0%
!! ACTTTCGGGTTCCAGTCACT+AGG - chr4_2:55091818-55091837 None:intergenic 50.0%
GTCAGTAGGAACTCACCGTA+TGG + chr4_2:55091930-55091949 Msa0608090:intron 50.0%
TGAAGGTCTTTCCCTCAGCT+CGG - chr4_2:55092066-55092085 None:intergenic 50.0%
CAACCAGCCTTGCGTATCTT+AGG + chr4_2:55092559-55092578 Msa0608090:five_prime_UTR 50.0%
CCGCGAATTTCCTCAACAGT+GGG - chr4_2:55092686-55092705 None:intergenic 50.0%
CCCACTGTTGAGGAAATTCG+CGG + chr4_2:55092683-55092702 Msa0608090:CDS 50.0%
CTCCAAACCGAGGACGAAAA+AGG - chr4_2:55093023-55093042 None:intergenic 50.0%
TTATTGGAGCGGAGAAGTCG+CGG + chr4_2:55093092-55093111 Msa0608090:intron 50.0%
AGGAGATTAAGGTCCTGTCG+TGG + chr4_2:55093231-55093250 Msa0608090:intron 50.0%
TTAAGGTCCTGTCGTGGAGA+TGG + chr4_2:55093237-55093256 Msa0608090:intron 50.0%
TCAAACTCCATCTCCACGAC+AGG - chr4_2:55093247-55093266 None:intergenic 50.0%
! TATGAATGGTGTTGGGACCC+CGG + chr4_2:55093296-55093315 Msa0608090:intron 50.0%
TACCTACTCACACAATCGCC+GGG - chr4_2:55093317-55093336 None:intergenic 50.0%
CTACCTACTCACACAATCGC+CGG - chr4_2:55093318-55093337 None:intergenic 50.0%
CCAAGACCCGTAAACAACCA+TGG - chr4_2:55093371-55093390 None:intergenic 50.0%
CCATGGTTGTTTACGGGTCT+TGG + chr4_2:55093368-55093387 Msa0608090:intron 50.0%
!!! GGGTCTGCTGTTCTGGTTTT+AGG + chr4_2:55093435-55093454 Msa0608090:intron 50.0%
AGGTCTGGTTGGGTGATGTT+CGG + chr4_2:55093455-55093474 Msa0608090:intron 50.0%
CCTAAAAACCAGCCACAGAC+CGG - chr4_2:55093497-55093516 None:intergenic 50.0%
! GGGATTGTTTCTTGGAGCAC+TGG + chr4_2:55094169-55094188 Msa0608090:CDS 50.0%
CACTTCTGGTCATTCAGCAC+TGG - chr4_2:55094637-55094656 None:intergenic 50.0%
!! GACCAGAAGTGACTAGCCTA+AGG + chr4_2:55094646-55094665 Msa0608090:intron 50.0%
CGCAATCTGGTAGGATTGTG+TGG - chr4_2:55095132-55095151 None:intergenic 50.0%
AGACAGAACCGCAATCTGGT+AGG - chr4_2:55095141-55095160 None:intergenic 50.0%
GGTGTGGGGGTTTCTTCATA+TGG + chr4_2:55095289-55095308 Msa0608090:intron 50.0%
GAGTGCATGCACACAAGCAT+TGG + chr4_2:55095497-55095516 Msa0608090:intron 50.0%
TCTCTCTTCCAGTCTTCCAG+GGG - chr4_2:55095550-55095569 None:intergenic 50.0%
! TCATCCAGGGCACTTCTAGA+AGG + chr4_2:55095793-55095812 Msa0608090:intron 50.0%
!! GAAACCTTCTAGAAGTGCCC+TGG - chr4_2:55095800-55095819 None:intergenic 50.0%
GTTCTGACAGTGGCCCAATA+TGG + chr4_2:55095998-55096017 Msa0608090:intron 50.0%
TGGTCCACAAGCTGCATGTA+TGG + chr4_2:55096300-55096319 Msa0608090:CDS 50.0%
GGTCCACAAGCTGCATGTAT+GGG + chr4_2:55096301-55096320 Msa0608090:CDS 50.0%
CATCCCATACATGCAGCTTG+TGG - chr4_2:55096307-55096326 None:intergenic 50.0%
CGGATGCATCTTCCGAACTT+AGG + chr4_2:55096536-55096555 Msa0608090:three_prime_UTR 50.0%
ATGAACAGGGGCGGAGAAGA+AGG - chr4_2:55091481-55091500 None:intergenic 55.0%
TCGACCAGTGACCTAGTGAC+TGG + chr4_2:55091804-55091823 Msa0608090:intron 55.0%
GGTTCCAGTCACTAGGTCAC+TGG - chr4_2:55091811-55091830 None:intergenic 55.0%
GAACTCACCGTATGGCTGTG+TGG + chr4_2:55091938-55091957 Msa0608090:intron 55.0%
GCCGCGAATTTCCTCAACAG+TGG - chr4_2:55092687-55092706 None:intergenic 55.0%
! GCTGTGCGCAGTGTTGTTAG+TGG + chr4_2:55092728-55092747 Msa0608090:CDS 55.0%
!! GCCCTTTTTCGTCCTCGGTT+TGG + chr4_2:55093018-55093037 Msa0608090:intron 55.0%
ACCTACTCACACAATCGCCG+GGG - chr4_2:55093316-55093335 None:intergenic 55.0%
!!! GGTTTTCGGGTTTGCTGCCA+TGG + chr4_2:55093351-55093370 Msa0608090:intron 55.0%
TTACGGGTCTTGGCGTGTTG+TGG + chr4_2:55093378-55093397 Msa0608090:intron 55.0%
TACGGGTCTTGGCGTGTTGT+GGG + chr4_2:55093379-55093398 Msa0608090:intron 55.0%
!! TGTTCGGTGCAGTCCTTGTG+TGG + chr4_2:55093471-55093490 Msa0608090:intron 55.0%
!!! CCGGTCTGTGGCTGGTTTTT+AGG + chr4_2:55093494-55093513 Msa0608090:intron 55.0%
! CGAGCACCGTATTTAGGTGG+AGG - chr4_2:55093526-55093545 None:intergenic 55.0%
! AGCTTTTGCGTGTCTTGCGC+AGG + chr4_2:55093577-55093596 Msa0608090:intron 55.0%
! TTTTGCGTGTCTTGCGCAGG+CGG + chr4_2:55093580-55093599 Msa0608090:intron 55.0%
AAGCAAAGCAGATGGGGCGA+AGG + chr4_2:55094243-55094262 Msa0608090:CDS 55.0%
ACACACCTCCCATGAGGTGT+AGG + chr4_2:55094588-55094607 Msa0608090:intron 55.0%
ATGCTCCTACACCTCATGGG+AGG - chr4_2:55094596-55094615 None:intergenic 55.0%
CTTGTATGCCCCTGGAAGAC+TGG + chr4_2:55095539-55095558 Msa0608090:intron 55.0%
CAAAGGGGGTCTGGTGTGAA+TGG + chr4_2:55095753-55095772 Msa0608090:intron 55.0%
GCTGCATGTATGGGATGTGC+TGG + chr4_2:55096310-55096329 Msa0608090:CDS 55.0%
GAGGGACGTGATAGGGTGTA+AGG + chr4_2:55096460-55096479 Msa0608090:three_prime_UTR 55.0%
AGGGAGTCACCACTCACCAC+CGG - chr4_2:55090926-55090945 None:intergenic 60.0%
GGTGAGTGGTGACTCCCTTC+TGG + chr4_2:55090928-55090947 Msa0608090:five_prime_UTR 60.0%
CGGCTGCGGTGAAGAGGATT+AGG - chr4_2:55091458-55091477 None:intergenic 60.0%
AACAGGGGCGGAGAAGAAGG+CGG - chr4_2:55091478-55091497 None:intergenic 60.0%
GCTACGGCCACACAGCCATA+CGG - chr4_2:55091948-55091967 None:intergenic 60.0%
ACCCCGGCGATTGTGTGAGT+AGG + chr4_2:55093312-55093331 Msa0608090:intron 60.0%
ACGGGTCTTGGCGTGTTGTG+GGG + chr4_2:55093380-55093399 Msa0608090:intron 60.0%
ACTAGAGGGAGCTGCTGTCC+AGG - chr4_2:55093409-55093428 None:intergenic 60.0%
! AGGTGGTCTTGGCATCGCCA+TGG + chr4_2:55094148-55094167 Msa0608090:CDS 60.0%
! GGTGGTCTTGGCATCGCCAT+GGG + chr4_2:55094149-55094168 Msa0608090:CDS 60.0%
AGCAGATGGGGCGAAGGAGT+TGG + chr4_2:55094249-55094268 Msa0608090:CDS 60.0%
GAGGTGTGTCAGGCCATGTC+TGG - chr4_2:55094577-55094596 None:intergenic 60.0%
! CACCTCATGGGAGGTGTGTC+AGG - chr4_2:55094587-55094606 None:intergenic 60.0%
CTCTCCACCGTCCTCCTCTC+CGG + chr4_2:55090904-55090923 Msa0608090:five_prime_UTR 65.0%
CTCACCACCGGAGAGGAGGA+CGG - chr4_2:55090914-55090933 None:intergenic 65.0%
TCCTCCTCTCCGGTGGTGAG+TGG + chr4_2:55090914-55090933 Msa0608090:five_prime_UTR 65.0%
ACCACTCACCACCGGAGAGG+AGG - chr4_2:55090918-55090937 None:intergenic 65.0%
GTCACCACTCACCACCGGAG+AGG - chr4_2:55090921-55090940 None:intergenic 65.0%
AGAAGGCGGCTGCGGTGAAG+AGG - chr4_2:55091464-55091483 None:intergenic 65.0%
GGTCTTGGCGTGTTGTGGGG+TGG + chr4_2:55093383-55093402 Msa0608090:intron 65.0%
CGGTGCAGTCCTTGTGTGGC+CGG + chr4_2:55093475-55093494 Msa0608090:intron 65.0%
GTCCTTGTGTGGCCGGTCTG+TGG + chr4_2:55093482-55093501 Msa0608090:intron 65.0%
AGCCACAGACCGGCCACACA+AGG - chr4_2:55093487-55093506 None:intergenic 65.0%
TTGTGTGGCCGGTCTGTGGC+TGG + chr4_2:55093486-55093505 Msa0608090:intron 65.0%
GGCCTGACACACCTCCCATG+AGG + chr4_2:55094582-55094601 Msa0608090:intron 65.0%
! CAGGGGCATACAAGCGAGCC+CGG - chr4_2:55095533-55095552 None:intergenic 65.0%
TCCACCGTCCTCCTCTCCGG+TGG + chr4_2:55090907-55090926 Msa0608090:five_prime_UTR 70.0%
ACCACCGGAGAGGAGGACGG+TGG - chr4_2:55090911-55090930 None:intergenic 70.0%
GGCGGAGAAGAAGGCGGCTG+CGG - chr4_2:55091472-55091491 None:intergenic 70.0%
TGGCGTGTTGTGGGGTGGCC+TGG + chr4_2:55093388-55093407 Msa0608090:intron 70.0%
CGGGCTCGCTTGTATGCCCC+TGG + chr4_2:55095531-55095550 Msa0608090:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55090746 55096791 55090746 ID=Msa0608090;Name=Msa0608090
chr4_2 mRNA 55090746 55096791 55090746 ID=Msa0608090-mRNA-1;Parent=Msa0608090;Name=Msa0608090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=301|1|1|1|0.6|0.5|6|407|170
chr4_2 exon 55090746 55090949 55090746 ID=Msa0608090-mRNA-1:exon:13970;Parent=Msa0608090-mRNA-1
chr4_2 exon 55091475 55091514 55091475 ID=Msa0608090-mRNA-1:exon:13971;Parent=Msa0608090-mRNA-1
chr4_2 exon 55092539 55092758 55092539 ID=Msa0608090-mRNA-1:exon:13972;Parent=Msa0608090-mRNA-1
chr4_2 exon 55094147 55094337 55094147 ID=Msa0608090-mRNA-1:exon:13973;Parent=Msa0608090-mRNA-1
chr4_2 exon 55094424 55094496 55094424 ID=Msa0608090-mRNA-1:exon:13974;Parent=Msa0608090-mRNA-1
chr4_2 exon 55096299 55096791 55096299 ID=Msa0608090-mRNA-1:exon:13975;Parent=Msa0608090-mRNA-1
chr4_2 five_prime_UTR 55090746 55090949 55090746 ID=Msa0608090-mRNA-1:five_prime_utr;Parent=Msa0608090-mRNA-1
chr4_2 five_prime_UTR 55091475 55091514 55091475 ID=Msa0608090-mRNA-1:five_prime_utr;Parent=Msa0608090-mRNA-1
chr4_2 five_prime_UTR 55092539 55092595 55092539 ID=Msa0608090-mRNA-1:five_prime_utr;Parent=Msa0608090-mRNA-1
chr4_2 CDS 55092596 55092758 55092596 ID=Msa0608090-mRNA-1:cds;Parent=Msa0608090-mRNA-1
chr4_2 CDS 55094147 55094337 55094147 ID=Msa0608090-mRNA-1:cds;Parent=Msa0608090-mRNA-1
chr4_2 CDS 55094424 55094496 55094424 ID=Msa0608090-mRNA-1:cds;Parent=Msa0608090-mRNA-1
chr4_2 CDS 55096299 55096384 55096299 ID=Msa0608090-mRNA-1:cds;Parent=Msa0608090-mRNA-1
chr4_2 three_prime_UTR 55096385 55096791 55096385 ID=Msa0608090-mRNA-1:three_prime_utr;Parent=Msa0608090-mRNA-1
Gene Sequence

>Msa0608090

ATGGCTGATGAGTCGCAAAAAGCTGCTTCAAATGATTCTGTGAACTCAAAAGAAGTCGAGAAGCCTCAAATTCAGCCCATAAGTTTGCCCACTGTTGAGGAAATTCGCGGCCAAGACATTTGGAACAATTGCGCTGTGCGCAGTGTTGTTAGTGGAGTCATGGGAGGTGGTCTTGGCATCGCCATGGGATTGTTTCTTGGAGCACTGGACAACCCTATGATGCAAGATCAAATGACTGGCAAACAGCAGTTTATATTTCAAGCAAAGCAGATGGGGCGAAGGAGTTGGAGTTCAGCCAAAGCATTTGCTGTTATGGGTTTCGTATTCTCAGCTGCTGAGTGTGTTGTTGAGAAGGCACGAGCAAAACATGACATCACAAATACGTTTGTTGCTGGATGTACTACTGGAGCTGCTATATCAGCAAAAGGTGGTCCACAAGCTGCATGTATGGGATGTGCTGGCTTTGCCGCATTCTCTGTCGTCATAGAGAAGTTTCTGGAGAGGCATCAATAG
Protein sequence

>Msa0608090

MADESQKAASNDSVNSKEVEKPQIQPISLPTVEEIRGQDIWNNCAVRSVVSGVMGGGLGIAMGLFLGALDNPMMQDQMTGKQQFIFQAKQMGRRSWSSAKAFAVMGFVFSAAECVVEKARAKHDITNTFVAGCTTGAAISAKGGPQAACMGCAGFAAFSVVIEKFLERHQ*