AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648470 MtrunA17_Chr2g0312891 96.471 170 5 1 1 170 1 169 2.50e-119 334
Msa0648470 MtrunA17_Chr4g0039861 97.458 118 3 0 1 118 1 118 3.47e-82 238
Msa0648470 MtrunA17_Chr4g0039871 98.113 53 1 0 118 170 27 79 4.72e-32 110
Msa0648470 MtrunA17_Chr5g0445201 46.269 67 36 0 97 163 77 143 2.82e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648470 AT3G10110.1 68.452 168 52 1 2 169 6 172 1.83e-71 213
Msa0648470 AT3G10110.4 66.901 142 46 1 2 143 6 146 1.05e-53 167
Msa0648470 AT3G10110.3 67.521 117 37 1 2 118 6 121 1.43e-40 134
Msa0648470 AT3G10110.2 67.521 117 37 1 2 118 6 121 1.43e-40 134
Msa0648470 AT5G55510.1 45.070 71 39 0 98 168 87 157 8.49e-12 61.6
Msa0648470 AT4G26670.1 45.070 71 39 0 98 168 87 157 9.12e-12 61.2

Find 88 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACAGTGGGCAAACTTA+TGG 0.181883 4_3:-54927828 None:intergenic
CACAACCCTTTCTTGTGCTT+GGG 0.225024 4_3:-54925971 None:intergenic
TCTTGTGCTTGGGGTTTAGA+TGG 0.255497 4_3:-54925961 None:intergenic
AAGATTTATGGAGTATTTCT+AGG 0.263070 4_3:+54931861 Msa0648470:three_prime_UTR
AGCCAAAGCATTTGCTGTTA+TGG 0.268629 4_3:+54929432 Msa0648470:CDS
GCCAAAGCATTTGCTGTTAT+GGG 0.277781 4_3:+54929433 Msa0648470:CDS
CAACCAGCCTTGCGTATCTT+AGG 0.284480 4_3:+54927715 Msa0648470:five_prime_UTR
GTCATTTGATCTTGCATCAT+AGG 0.288738 4_3:-54929352 None:intergenic
AAAATAATTCAAAACTAAAA+AGG 0.289895 4_3:-54925918 None:intergenic
TGTCGTCATAGAGAAGTTTC+TGG 0.329705 4_3:+54931503 Msa0648470:CDS
ATCGCCATGGGATTGTTTCT+TGG 0.335372 4_3:+54929316 Msa0648470:CDS
GTGATGACATGGTTTAATAT+TGG 0.335677 4_3:+54931722 Msa0648470:three_prime_UTR
CATCACAATTATTGCTCCTA+TGG 0.349749 4_3:-54931766 None:intergenic
GCACAACCCTTTCTTGTGCT+TGG 0.361116 4_3:-54925972 None:intergenic
AAATTCGCGGCCAAGACATT+TGG 0.363811 4_3:+54927852 Msa0648470:CDS
ATTGTAAGATGAAGATGAAC+AGG 0.373958 4_3:-54926665 None:intergenic
GGTGAGTGGTGACTCCCTTC+TGG 0.377215 4_3:+54926097 Msa0648470:five_prime_UTR
TCAACAGTGGGCAAACTTAT+GGG 0.406352 4_3:-54927827 None:intergenic
TGGTCCACAAGCTGCATGTA+TGG 0.406432 4_3:+54931455 Msa0648470:CDS
ATCACAAATACGTTTGTTGC+TGG 0.417420 4_3:+54929597 Msa0648470:CDS
CGCAATTGTTCCAAATGTCT+TGG 0.417847 4_3:-54927862 None:intergenic
ATACGATAGAGGGACGTGAT+AGG 0.420136 4_3:+54931607 Msa0648470:three_prime_UTR
TTATTTGTATACGATGTCAT+TGG 0.422822 4_3:+54931668 Msa0648470:three_prime_UTR
TGAATTTCAGGAGGTGGTCT+TGG 0.422853 4_3:+54929292 Msa0648470:intron
AAACTTATGGGCTGAATTTG+AGG 0.426075 4_3:-54927815 None:intergenic
ATGAACAGGGGCGGAGGAGA+AGG 0.427837 4_3:-54926651 None:intergenic
CTCTCCACCGTCCTCCTCTC+CGG 0.429599 4_3:+54926073 Msa0648470:five_prime_UTR
CGGATGCATCTTCCGAACTT+AGG 0.430981 4_3:+54931691 Msa0648470:three_prime_UTR
TCACAGAGCTTTCCTAAGTT+CGG 0.438434 4_3:-54931703 None:intergenic
ATAACAACAACAAATATAAC+AGG 0.441644 4_3:-54925999 None:intergenic
GGGATTGTTTCTTGGAGCAC+TGG 0.445943 4_3:+54929324 Msa0648470:CDS
ACCCATAACAGCAAATGCTT+TGG 0.456941 4_3:-54929434 None:intergenic
TTTGTTGCTGGATGTACTAC+TGG 0.469575 4_3:+54929609 Msa0648470:CDS
GTTTCTGGAGAGGCATCAAT+AGG 0.471586 4_3:+54931518 Msa0648470:CDS
CTAAACCCCAAGCACAAGAA+AGG 0.471626 4_3:+54925965 Msa0648470:five_prime_UTR
TCATTTGATCTTGCATCATA+GGG 0.475108 4_3:-54929351 None:intergenic
TGCTGAGTGTGTTGTTGAGA+AGG 0.481367 4_3:+54929471 Msa0648470:CDS
AGCAGATGGGGCGAAGGAGT+TGG 0.482779 4_3:+54929404 Msa0648470:CDS
CATCAATAGGTGAATTGACT+TGG 0.482794 4_3:+54931531 Msa0648470:exon
CATATCATATCTCTTTGAAA+AGG 0.485911 4_3:-54931908 None:intergenic
GGAGCTGCTATATCAGCAAA+AGG 0.495347 4_3:+54929630 Msa0648470:CDS
GAGGGACGTGATAGGGTGTA+AGG 0.500327 4_3:+54931615 Msa0648470:three_prime_UTR
GCTGTGCGCAGTGTTGTTAG+TGG 0.504131 4_3:+54927884 Msa0648470:CDS
ACAACCCTTTCTTGTGCTTG+GGG 0.513733 4_3:-54925970 None:intergenic
TATCACGTCCCTCTATCGTA+TGG 0.515830 4_3:-54931605 None:intergenic
CCCACTGTTGAGGAAATTCG+CGG 0.517714 4_3:+54927839 Msa0648470:CDS
TCCTCCTCTCCGGTGGTGAG+TGG 0.520469 4_3:+54926083 Msa0648470:five_prime_UTR
CAGTGTTGTTAGTGGAGTCA+TGG 0.521834 4_3:+54927892 Msa0648470:CDS
TTAGGTTTGTGCTTCAACAA+TGG 0.522892 4_3:+54927733 Msa0648470:exon
TACGATAGAGGGACGTGATA+GGG 0.523203 4_3:+54931608 Msa0648470:three_prime_UTR
CATAAGTTTGCCCACTGTTG+AGG 0.523867 4_3:+54927829 Msa0648470:CDS
AGGTGGTCTTGGCATCGCCA+TGG 0.525130 4_3:+54929303 Msa0648470:CDS
GGTGGTCTTGGCATCGCCAT+GGG 0.525174 4_3:+54929304 Msa0648470:CDS
TATATTTCAAGCAAAGCAGA+TGG 0.533483 4_3:+54929390 Msa0648470:CDS
TTTGTATACGATGTCATTGG+CGG 0.534029 4_3:+54931671 Msa0648470:three_prime_UTR
ATGAAGATGAACAGGGGCGG+AGG 0.534761 4_3:-54926657 None:intergenic
AACAGGGGCGGAGGAGAAGG+CGG 0.538062 4_3:-54926648 None:intergenic
GCTGCATGTATGGGATGTGC+TGG 0.545754 4_3:+54931465 Msa0648470:CDS
TAAACCCCAAGCACAAGAAA+GGG 0.556283 4_3:+54925966 Msa0648470:five_prime_UTR
ACCACTCACCACCGGAGAGG+AGG 0.563407 4_3:-54926084 None:intergenic
CCGCGAATTTCCTCAACAGT+GGG 0.567028 4_3:-54927839 None:intergenic
ATATTTCAAGCAAAGCAGAT+GGG 0.571540 4_3:+54929391 Msa0648470:CDS
AAACCTAAGATACGCAAGGC+TGG 0.571606 4_3:-54927718 None:intergenic
AAGCAAAGCAGATGGGGCGA+AGG 0.583012 4_3:+54929398 Msa0648470:CDS
TCTCTTTGAAAAGGAAAACA+AGG 0.583579 4_3:-54931899 None:intergenic
AGTGTTGTTAGTGGAGTCAT+GGG 0.583699 4_3:+54927893 Msa0648470:CDS
ATCACGTCCCTCTATCGTAT+GGG 0.584693 4_3:-54931604 None:intergenic
ATGATGCAAGATCAAATGAC+TGG 0.585983 4_3:+54929355 Msa0648470:CDS
TCCACCGTCCTCCTCTCCGG+TGG 0.587465 4_3:+54926076 Msa0648470:five_prime_UTR
CATCCCATACATGCAGCTTG+TGG 0.593009 4_3:-54931459 None:intergenic
TATTTCAAGCAAAGCAGATG+GGG 0.603343 4_3:+54929392 Msa0648470:CDS
AGAGTTACTACTAACCAGAA+GGG 0.604147 4_3:-54926111 None:intergenic
TTTGAAAAGGAAAACAAGGG+TGG 0.607278 4_3:-54931895 None:intergenic
AGGAAAGCTCTGTGATGACA+TGG 0.611207 4_3:+54931711 Msa0648470:three_prime_UTR
AGGGAGTCACCACTCACCAC+CGG 0.611558 4_3:-54926092 None:intergenic
CTCTATGACGACAGAGAATG+CGG 0.617557 4_3:-54931493 None:intergenic
CTCACCACCGGAGAGGAGGA+CGG 0.618826 4_3:-54926080 None:intergenic
GCCGCGAATTTCCTCAACAG+TGG 0.623840 4_3:-54927840 None:intergenic
GGTCCACAAGCTGCATGTAT+GGG 0.631485 4_3:+54931456 Msa0648470:CDS
TGCTCCAAGAAACAATCCCA+TGG 0.644657 4_3:-54929320 None:intergenic
TTGTAAGATGAAGATGAACA+GGG 0.655307 4_3:-54926664 None:intergenic
TCATAGAGAAGTTTCTGGAG+AGG 0.660052 4_3:+54931508 Msa0648470:CDS
GTCACCACTCACCACCGGAG+AGG 0.660867 4_3:-54926087 None:intergenic
ACCACCGGAGAGGAGGACGG+TGG 0.663796 4_3:-54926077 None:intergenic
GCACAAACCTAAGATACGCA+AGG 0.666362 4_3:-54927722 None:intergenic
CTCTTTGAAAAGGAAAACAA+GGG 0.679424 4_3:-54931898 None:intergenic
AAGATGAAGATGAACAGGGG+CGG 0.741265 4_3:-54926660 None:intergenic
TGTAAGATGAAGATGAACAG+GGG 0.755374 4_3:-54926663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTCAAAACTAAAA+AGG - chr4_3:54925921-54925940 None:intergenic 10.0%
!!! AGTAAATATTTTTTTTGAAA+CGG + chr4_3:54926551-54926570 Msa0648470:intron 10.0%
!! TTTAAATACAATTTATTAAG+TGG - chr4_3:54927988-54928007 None:intergenic 10.0%
!! AATTATATGTTACAATTATT+TGG - chr4_3:54930386-54930405 None:intergenic 10.0%
!! TTTATTTGATGAAATTTATG+TGG + chr4_3:54926321-54926340 Msa0648470:intron 15.0%
!! TTATTTGATGAAATTTATGT+GGG + chr4_3:54926322-54926341 Msa0648470:intron 15.0%
!! AAATGAAATTGTTTATGTTA+GGG + chr4_3:54926433-54926452 Msa0648470:intron 15.0%
!!! TTTTTTTGACAGATTAATTT+AGG + chr4_3:54926505-54926524 Msa0648470:intron 15.0%
!!! TTTTTTGACAGATTAATTTA+GGG + chr4_3:54926506-54926525 Msa0648470:intron 15.0%
!!! GTAAATATTTTTTTTGAAAC+GGG + chr4_3:54926552-54926571 Msa0648470:intron 15.0%
!!! ATTATTTTGTTTGTGAAATT+AGG + chr4_3:54926850-54926869 Msa0648470:intron 15.0%
!! ATTATTATTAACACTTCATT+AGG - chr4_3:54927651-54927670 None:intergenic 15.0%
!!! TCCAAATATTTGTATAATTT+TGG + chr4_3:54928026-54928045 Msa0648470:intron 15.0%
!! ACCAAAATTATACAAATATT+TGG - chr4_3:54928030-54928049 None:intergenic 15.0%
!! TTAGACTGAATAATATTTAT+AGG + chr4_3:54930487-54930506 Msa0648470:intron 15.0%
!! AATATTTATAGGATTATCTT+AGG + chr4_3:54930498-54930517 Msa0648470:intron 15.0%
!! AAAAATAAGAATGAATTACA+AGG - chr4_3:54931839-54931858 None:intergenic 15.0%
!!! TTGTAATTCATTCTTATTTT+TGG + chr4_3:54931838-54931857 Msa0648470:three_prime_UTR 15.0%
!! ATAACAACAACAAATATAAC+AGG - chr4_3:54926002-54926021 None:intergenic 20.0%
!! GAAATGAAATTGTTTATGTT+AGG + chr4_3:54926432-54926451 Msa0648470:intron 20.0%
!!! TTAGTTGATATTCATACTTT+AGG + chr4_3:54926461-54926480 Msa0648470:intron 20.0%
!!! TAGTTGATATTCATACTTTA+GGG + chr4_3:54926462-54926481 Msa0648470:intron 20.0%
!! AAGCTTGAAAAATCAAATTT+GGG - chr4_3:54926727-54926746 None:intergenic 20.0%
!! AAAGCTTGAAAAATCAAATT+TGG - chr4_3:54926728-54926747 None:intergenic 20.0%
!! TTACTATACTATCATATGTT+AGG - chr4_3:54927079-54927098 None:intergenic 20.0%
!! ACATATGATAGTATAGTAAA+TGG + chr4_3:54927080-54927099 Msa0648470:intron 20.0%
!! TTTAAATGATATACAACAGA+CGG - chr4_3:54927290-54927309 None:intergenic 20.0%
!! GTATATCATTTAAACATGTT+AGG + chr4_3:54927296-54927315 Msa0648470:intron 20.0%
!! AAAACAATAGATAGAGAAAA+AGG + chr4_3:54928913-54928932 Msa0648470:intron 20.0%
!!! AGATACTTATATAACTTTTG+GGG - chr4_3:54929093-54929112 None:intergenic 20.0%
!!! GAGATACTTATATAACTTTT+GGG - chr4_3:54929094-54929113 None:intergenic 20.0%
!!! TGAGATACTTATATAACTTT+TGG - chr4_3:54929095-54929114 None:intergenic 20.0%
!!! ATTTTACGAAATAAATCGAA+TGG + chr4_3:54929122-54929141 Msa0648470:intron 20.0%
!! TTGTAAAATGATTGTTTGTT+CGG + chr4_3:54929259-54929278 Msa0648470:intron 20.0%
!!! AGCTAAAAATTTAGTTTCAA+TGG - chr4_3:54929868-54929887 None:intergenic 20.0%
!! TCTCATTTATAAGAAAAATC+TGG - chr4_3:54930015-54930034 None:intergenic 20.0%
!!! ATAGAAAACAACTTTGAAAA+GGG - chr4_3:54931055-54931074 None:intergenic 20.0%
!!! AATAGAAAACAACTTTGAAA+AGG - chr4_3:54931056-54931075 None:intergenic 20.0%
!!! TCTTATTTTTGGAAGATTTA+TGG + chr4_3:54931849-54931868 Msa0648470:three_prime_UTR 20.0%
!! TAATTACATTTTCATGTCAC+AGG - chr4_3:54926219-54926238 None:intergenic 25.0%
!! ATACTTTAGGGACTTAATTT+AGG + chr4_3:54926474-54926493 Msa0648470:intron 25.0%
!! TACTTTAGGGACTTAATTTA+GGG + chr4_3:54926475-54926494 Msa0648470:intron 25.0%
! TGGGTAAAAATAGAGAAAAT+GGG - chr4_3:54926708-54926727 None:intergenic 25.0%
! TTGGGTAAAAATAGAGAAAA+TGG - chr4_3:54926709-54926728 None:intergenic 25.0%
! AAAAAGTTTCATATCCCATA+AGG + chr4_3:54926754-54926773 Msa0648470:intron 25.0%
! TTATAATGACAACACCTTAT+GGG - chr4_3:54926771-54926790 None:intergenic 25.0%
! TAGTACAATAAGTGACAAAA+TGG + chr4_3:54926973-54926992 Msa0648470:intron 25.0%
! TTTACAAAACTTATGTCAGT+AGG + chr4_3:54927109-54927128 Msa0648470:intron 25.0%
! AGAAAAAAAAGGCAATAATC+TGG - chr4_3:54927172-54927191 None:intergenic 25.0%
! GTGTTTCGTTAAGAAAAAAA+AGG - chr4_3:54927183-54927202 None:intergenic 25.0%
! AGTAGCAAATAAATGTTGTA+AGG - chr4_3:54927389-54927408 None:intergenic 25.0%
!! ATGAGTCAAATCAAATTTTC+CGG - chr4_3:54927596-54927615 None:intergenic 25.0%
! ATAAGATGCTAACAGATATT+TGG - chr4_3:54927961-54927980 None:intergenic 25.0%
!! ATTATACAAATATTTGGAGC+AGG - chr4_3:54928024-54928043 None:intergenic 25.0%
!!! TCGGTTTGTAGTAAAATTTT+GGG + chr4_3:54928189-54928208 Msa0648470:intron 25.0%
!!! TTTGTAGTAAAATTTTGGGT+TGG + chr4_3:54928193-54928212 Msa0648470:intron 25.0%
! TTTGGAAATGGATAAATGAT+AGG + chr4_3:54928325-54928344 Msa0648470:intron 25.0%
!! TTCTTTTTCTCTCTTCTTAT+TGG + chr4_3:54928887-54928906 Msa0648470:intron 25.0%
! TGTACAAATATCATTTCACT+TGG + chr4_3:54929001-54929020 Msa0648470:intron 25.0%
!!! TCCTTTTTTCTTTTCTTTTC+AGG + chr4_3:54929557-54929576 Msa0648470:intron 25.0%
! CAGAAAACAAATGAAAAAGA+GGG - chr4_3:54929659-54929678 None:intergenic 25.0%
! ACAGAAAACAAATGAAAAAG+AGG - chr4_3:54929660-54929679 None:intergenic 25.0%
! AACCTGTATTTAAGTAATGA+TGG + chr4_3:54929706-54929725 Msa0648470:intron 25.0%
! TAAATGATAGAGTATACTTC+TGG + chr4_3:54929887-54929906 Msa0648470:intron 25.0%
!! GCATTTTGTATCTGAAAAAT+TGG - chr4_3:54930135-54930154 None:intergenic 25.0%
!! AAAATGCCAAGTTTTTAACA+AGG + chr4_3:54930148-54930167 Msa0648470:intron 25.0%
! TTCAAACCTTGTTAAAAACT+TGG - chr4_3:54930157-54930176 None:intergenic 25.0%
! ACAATCTTAATTGCAAGATT+GGG - chr4_3:54930259-54930278 None:intergenic 25.0%
! AACAATCTTAATTGCAAGAT+TGG - chr4_3:54930260-54930279 None:intergenic 25.0%
! TATGTTACAATTATTTGGCA+AGG - chr4_3:54930381-54930400 None:intergenic 25.0%
!! CAAAATTAAAGTGTTTGTCA+TGG + chr4_3:54930423-54930442 Msa0648470:intron 25.0%
! ATTTATAGGATTATCTTAGG+CGG + chr4_3:54930501-54930520 Msa0648470:intron 25.0%
!! AAAGCTTGATTTTCTCTTTT+AGG + chr4_3:54930528-54930547 Msa0648470:intron 25.0%
!! CTAACAATAACTTCTGTTTT+GGG - chr4_3:54931017-54931036 None:intergenic 25.0%
!! TCTAACAATAACTTCTGTTT+TGG - chr4_3:54931018-54931037 None:intergenic 25.0%
!! CAATTGTGTATTCTGATTTT+TGG - chr4_3:54931108-54931127 None:intergenic 25.0%
! TTATTTGTATACGATGTCAT+TGG + chr4_3:54931668-54931687 Msa0648470:three_prime_UTR 25.0%
! ACAAGTATTACAAAAACCAT+AGG + chr4_3:54931750-54931769 Msa0648470:three_prime_UTR 25.0%
!! AAGATTTATGGAGTATTTCT+AGG + chr4_3:54931861-54931880 Msa0648470:three_prime_UTR 25.0%
!! CATATCATATCTCTTTGAAA+AGG - chr4_3:54931911-54931930 None:intergenic 25.0%
!! GTTTAGATGGATTTTGAAAG+GGG - chr4_3:54925951-54925970 None:intergenic 30.0%
!! GGTTTAGATGGATTTTGAAA+GGG - chr4_3:54925952-54925971 None:intergenic 30.0%
TCAAAGGAAAAGAGATTTGA+AGG - chr4_3:54926144-54926163 None:intergenic 30.0%
ACAAAAGAGTAGTGAATCAA+AGG - chr4_3:54926160-54926179 None:intergenic 30.0%
! ATTTTCATGTCACAGGTTTT+AGG - chr4_3:54926212-54926231 None:intergenic 30.0%
!! AAAATGGAGTTTGTTAGTGA+GGG - chr4_3:54926596-54926615 None:intergenic 30.0%
TTGTAAGATGAAGATGAACA+GGG - chr4_3:54926667-54926686 None:intergenic 30.0%
ATTGTAAGATGAAGATGAAC+AGG - chr4_3:54926668-54926687 None:intergenic 30.0%
GTTATAATGACAACACCTTA+TGG - chr4_3:54926772-54926791 None:intergenic 30.0%
! TTCATCTATCTAAAGCTAAC+AGG - chr4_3:54926803-54926822 None:intergenic 30.0%
! TTTAGTGCAGCTTTTCAAAT+TGG + chr4_3:54926893-54926912 Msa0648470:intron 30.0%
! TTAGTGCAGCTTTTCAAATT+GGG + chr4_3:54926894-54926913 Msa0648470:intron 30.0%
ATTGTCCATGTTTAACAAAC+CGG - chr4_3:54927034-54927053 None:intergenic 30.0%
AAACATGTTAGGTATGAAGT+AGG + chr4_3:54927307-54927326 Msa0648470:intron 30.0%
GTAACATCTAGTGATAGATA+AGG - chr4_3:54927550-54927569 None:intergenic 30.0%
! TGAGTCAAATCAAATTTTCC+GGG - chr4_3:54927595-54927614 None:intergenic 30.0%
AAAATCTGTGCAATGAACAA+TGG - chr4_3:54927680-54927699 None:intergenic 30.0%
CTAACAGATATTTGGAAATC+CGG - chr4_3:54927953-54927972 None:intergenic 30.0%
! CAAAATTTTACTACAAACCG+AGG - chr4_3:54928190-54928209 None:intergenic 30.0%
!! CTCGGTTTGTAGTAAAATTT+TGG + chr4_3:54928188-54928207 Msa0648470:intron 30.0%
TCTAAATGCACAGACAAATT+TGG - chr4_3:54928229-54928248 None:intergenic 30.0%
TGTCTGTGCATTTAGATTAT+TGG + chr4_3:54928233-54928252 Msa0648470:intron 30.0%
CAATTTGGGTAATTTGGAAA+TGG + chr4_3:54928313-54928332 Msa0648470:intron 30.0%
AAATGCGATTGATGAAATTG+TGG + chr4_3:54928365-54928384 Msa0648470:intron 30.0%
CTTGTATTATGAATGGTGTT+GGG + chr4_3:54928446-54928465 Msa0648470:intron 30.0%
! AGTAGGTAGTTTTTGTCAAT+GGG + chr4_3:54928486-54928505 Msa0648470:intron 30.0%
TCACAAAAGTTGTCATCAAA+TGG - chr4_3:54928862-54928881 None:intergenic 30.0%
ATAGAGAAAAAGGAAGAAAG+AGG + chr4_3:54928923-54928942 Msa0648470:intron 30.0%
TAGAGAAAAAGGAAGAAAGA+GGG + chr4_3:54928924-54928943 Msa0648470:intron 30.0%
TGTCAAAAGTTGTCACAAAA+TGG + chr4_3:54928977-54928996 Msa0648470:intron 30.0%
ACAAATATCATTTCACTTGG+TGG + chr4_3:54929004-54929023 Msa0648470:intron 30.0%
TGGGAAATATCAAATGTCAT+TGG + chr4_3:54929190-54929209 Msa0648470:intron 30.0%
TCATTTGATCTTGCATCATA+GGG - chr4_3:54929354-54929373 None:intergenic 30.0%
TATATTTCAAGCAAAGCAGA+TGG + chr4_3:54929390-54929409 Msa0648470:CDS 30.0%
ATATTTCAAGCAAAGCAGAT+GGG + chr4_3:54929391-54929410 Msa0648470:CDS 30.0%
!! TTGAGAAGGTTTAATGGATT+TGG + chr4_3:54929485-54929504 Msa0648470:intron 30.0%
!! TGAGAAGGTTTAATGGATTT+GGG + chr4_3:54929486-54929505 Msa0648470:intron 30.0%
GCCTGAAAAGAAAAGAAAAA+AGG - chr4_3:54929561-54929580 None:intergenic 30.0%
! CTCTATGCTGTAATTTTGTT+TGG + chr4_3:54929926-54929945 Msa0648470:intron 30.0%
GAGTCAAGATTGTTAATCAT+CGG + chr4_3:54930039-54930058 Msa0648470:intron 30.0%
!! TTAATCATCGGTTCATAACA+TGG + chr4_3:54930051-54930070 Msa0648470:intron 30.0%
! GGTTTCTTCATATGGTTTTT+GGG + chr4_3:54930452-54930471 Msa0648470:intron 30.0%
TTTATAGGATTATCTTAGGC+GGG + chr4_3:54930502-54930521 Msa0648470:intron 30.0%
!! TTTTAGGAGACATCTTTGTT+GGG + chr4_3:54930544-54930563 Msa0648470:intron 30.0%
! TTTTCAGTAACACCTTAGTA+AGG - chr4_3:54930783-54930802 None:intergenic 30.0%
AATACTAGGATACTACATCA+AGG - chr4_3:54930806-54930825 None:intergenic 30.0%
ATTTATTGCCTCTCAATACT+AGG - chr4_3:54930820-54930839 None:intergenic 30.0%
! AAATGTTAGTGCCTTAGTTT+TGG + chr4_3:54930846-54930865 Msa0648470:intron 30.0%
AACGCAAATTGATGTAAAAG+AGG + chr4_3:54931288-54931307 Msa0648470:intron 30.0%
TAATGTTTCCAATGTTTGTG+TGG + chr4_3:54931425-54931444 Msa0648470:intron 30.0%
GTGATGACATGGTTTAATAT+TGG + chr4_3:54931722-54931741 Msa0648470:three_prime_UTR 30.0%
! CTCTTTGAAAAGGAAAACAA+GGG - chr4_3:54931901-54931920 None:intergenic 30.0%
! TCTCTTTGAAAAGGAAAACA+AGG - chr4_3:54931902-54931921 None:intergenic 30.0%
!! GGGTTTAGATGGATTTTGAA+AGG - chr4_3:54925953-54925972 None:intergenic 35.0%
AGAGTTACTACTAACCAGAA+GGG - chr4_3:54926114-54926133 None:intergenic 35.0%
TAGAGTTACTACTAACCAGA+AGG - chr4_3:54926115-54926134 None:intergenic 35.0%
!!! GTTTTAGGTATTGGACATTG+TGG - chr4_3:54926197-54926216 None:intergenic 35.0%
!!! ATGTCACAGGTTTTAGGTAT+TGG - chr4_3:54926206-54926225 None:intergenic 35.0%
AGAATGAGTCTGACATAAAG+TGG + chr4_3:54926356-54926375 Msa0648470:intron 35.0%
!! GAAAATGGAGTTTGTTAGTG+AGG - chr4_3:54926597-54926616 None:intergenic 35.0%
TAGGACATAGTGAAGGAAAA+TGG - chr4_3:54926612-54926631 None:intergenic 35.0%
TGTAAGATGAAGATGAACAG+GGG - chr4_3:54926666-54926685 None:intergenic 35.0%
AAAATAACATCTGGGAAGCT+CGG - chr4_3:54926925-54926944 None:intergenic 35.0%
CGGTCGAAAAAATAACATCT+GGG - chr4_3:54926933-54926952 None:intergenic 35.0%
TCGGTCGAAAAAATAACATC+TGG - chr4_3:54926934-54926953 None:intergenic 35.0%
!!! AGATGTTATTTTTTCGACCG+AGG + chr4_3:54926933-54926952 Msa0648470:intron 35.0%
TGTTTAACAAACCGGACTTT+CGG - chr4_3:54927026-54927045 None:intergenic 35.0%
!! AAAGTCCGGTTTGTTAAACA+TGG + chr4_3:54927026-54927045 Msa0648470:intron 35.0%
AAACATGGACAATAAGCTAG+TGG + chr4_3:54927041-54927060 Msa0648470:intron 35.0%
!! AGTGAATGGCTTTGAAGATT+GGG - chr4_3:54927228-54927247 None:intergenic 35.0%
CAACAGACGGAAACAAATAA+AGG - chr4_3:54927277-54927296 None:intergenic 35.0%
! TGCGCTACTTTGGTATAAAT+GGG - chr4_3:54927437-54927456 None:intergenic 35.0%
! TTGCGCTACTTTGGTATAAA+TGG - chr4_3:54927438-54927457 None:intergenic 35.0%
! TGTTCATTGCACAGATTTTG+TGG + chr4_3:54927681-54927700 Msa0648470:intron 35.0%
TTAGGTTTGTGCTTCAACAA+TGG + chr4_3:54927733-54927752 Msa0648470:exon 35.0%
! AAACTTATGGGCTGAATTTG+AGG - chr4_3:54927818-54927837 None:intergenic 35.0%
AACCCTCACTTTCTTTATTC+CGG + chr4_3:54927931-54927950 Msa0648470:intron 35.0%
ATCCGGAATAAAGAAAGTGA+GGG - chr4_3:54927936-54927955 None:intergenic 35.0%
AATCCGGAATAAAGAAAGTG+AGG - chr4_3:54927937-54927956 None:intergenic 35.0%
GTGCATTTAGATTATTGGAG+CGG + chr4_3:54928238-54928257 Msa0648470:intron 35.0%
GCGGATACAAAATTACGAAA+GGG + chr4_3:54928268-54928287 Msa0648470:intron 35.0%
CGGATACAAAATTACGAAAG+GGG + chr4_3:54928269-54928288 Msa0648470:intron 35.0%
ACAAAATTACGAAAGGGGTT+TGG + chr4_3:54928274-54928293 Msa0648470:intron 35.0%
TAATTTGGCATGCGACAATT+TGG + chr4_3:54928298-54928317 Msa0648470:intron 35.0%
AATTTGGCATGCGACAATTT+GGG + chr4_3:54928299-54928318 Msa0648470:intron 35.0%
ATGCGACAATTTGGGTAATT+TGG + chr4_3:54928307-54928326 Msa0648470:intron 35.0%
TGAAATTGTGGAGGAGATTA+AGG + chr4_3:54928377-54928396 Msa0648470:intron 35.0%
CATTCATAATACAAGCAAGG+CGG - chr4_3:54928441-54928460 None:intergenic 35.0%
CACCATTCATAATACAAGCA+AGG - chr4_3:54928444-54928463 None:intergenic 35.0%
GCTTGTATTATGAATGGTGT+TGG + chr4_3:54928445-54928464 Msa0648470:intron 35.0%
! GAGTAGGTAGTTTTTGTCAA+TGG + chr4_3:54928485-54928504 Msa0648470:intron 35.0%
! GTAGGTAGTTTTTGTCAATG+GGG + chr4_3:54928487-54928506 Msa0648470:intron 35.0%
! TTTTTGTCAATGGGGTTTTC+AGG + chr4_3:54928495-54928514 Msa0648470:intron 35.0%
!! CAGGCGGATTATGAATAAAT+TGG + chr4_3:54928753-54928772 Msa0648470:intron 35.0%
GTGTCTATGAATGAGACTTT+AGG + chr4_3:54928812-54928831 Msa0648470:intron 35.0%
! AATATCATTTCACTTGGTGG+TGG + chr4_3:54929007-54929026 Msa0648470:intron 35.0%
!! TATATAACTTTTGGGGAGCA+AGG - chr4_3:54929086-54929105 None:intergenic 35.0%
TGTCAACATAGCTGAATTAC+TGG + chr4_3:54929170-54929189 Msa0648470:intron 35.0%
GTCAACATAGCTGAATTACT+GGG + chr4_3:54929171-54929190 Msa0648470:intron 35.0%
GGATTCATGTGATGAATTTC+AGG + chr4_3:54929280-54929299 Msa0648470:intron 35.0%
TTCATGTGATGAATTTCAGG+AGG + chr4_3:54929283-54929302 Msa0648470:intron 35.0%
GTCATTTGATCTTGCATCAT+AGG - chr4_3:54929355-54929374 None:intergenic 35.0%
ATGATGCAAGATCAAATGAC+TGG + chr4_3:54929355-54929374 Msa0648470:CDS 35.0%
TATTTCAAGCAAAGCAGATG+GGG + chr4_3:54929392-54929411 Msa0648470:CDS 35.0%
! GTGTTGTTGAGAAGGTTTAA+TGG + chr4_3:54929479-54929498 Msa0648470:intron 35.0%
! ATCACAAATACGTTTGTTGC+TGG + chr4_3:54929597-54929616 Msa0648470:CDS 35.0%
GGCCATCATTACTTAAATAC+AGG - chr4_3:54929711-54929730 None:intergenic 35.0%
!!! TTCAGCACTGGTTTTTTACA+AGG - chr4_3:54929780-54929799 None:intergenic 35.0%
!!! CCTAAGGTTTGCTTTTTCTT+GGG + chr4_3:54929817-54929836 Msa0648470:intron 35.0%
!!! TTGCTTTTTCTTGGGTAGTT+AGG + chr4_3:54929825-54929844 Msa0648470:intron 35.0%
! CTTTTGCATATGTGTGAACA+CGG - chr4_3:54930106-54930125 None:intergenic 35.0%
!!! GGATTGGCAAATATTTTGGT+GGG - chr4_3:54930235-54930254 None:intergenic 35.0%
!! AGGATTGGCAAATATTTTGG+TGG - chr4_3:54930236-54930255 None:intergenic 35.0%
ATCTTAATTGCAAGATTGGG+AGG - chr4_3:54930256-54930275 None:intergenic 35.0%
! TTAAAGTGTTTGTCATGGTG+TGG + chr4_3:54930428-54930447 Msa0648470:intron 35.0%
! TAAAGTGTTTGTCATGGTGT+GGG + chr4_3:54930429-54930448 Msa0648470:intron 35.0%
! GGGTTTCTTCATATGGTTTT+TGG + chr4_3:54930451-54930470 Msa0648470:intron 35.0%
!! TCTTCATATGGTTTTTGGGA+TGG + chr4_3:54930456-54930475 Msa0648470:intron 35.0%
!! CTTTTAGGAGACATCTTTGT+TGG + chr4_3:54930543-54930562 Msa0648470:intron 35.0%
TTTGTTGGGCATAAAATGCA+TGG + chr4_3:54930558-54930577 Msa0648470:intron 35.0%
CATAAAATGCATGGCAACAA+AGG + chr4_3:54930567-54930586 Msa0648470:intron 35.0%
CTCAAGGAGATAGTAAGTAA+TGG + chr4_3:54930624-54930643 Msa0648470:intron 35.0%
GAGATAGTAAGTAATGGTGA+TGG + chr4_3:54930630-54930649 Msa0648470:intron 35.0%
!! TCGTGACTTTTAAAGAGTCA+AGG + chr4_3:54930732-54930751 Msa0648470:intron 35.0%
! TGTAGTATCCTAGTATTGAG+AGG + chr4_3:54930809-54930828 Msa0648470:intron 35.0%
! CTAAGGCACTAACATTTCAA+TGG - chr4_3:54930843-54930862 None:intergenic 35.0%
TAGTCCATTCTCCAAAACTA+AGG - chr4_3:54930860-54930879 None:intergenic 35.0%
CTCTAATTCTCTATTGAGTG+TGG + chr4_3:54930883-54930902 Msa0648470:intron 35.0%
!! GTTTTGGGTGAAGTATATCA+AGG - chr4_3:54931002-54931021 None:intergenic 35.0%
AACTGCAAGTTCTCAAATCA+TGG + chr4_3:54931129-54931148 Msa0648470:intron 35.0%
ACTGCAAGTTCTCAAATCAT+GGG + chr4_3:54931130-54931149 Msa0648470:intron 35.0%
ACAACTTTCTTCTGCAATGA+GGG - chr4_3:54931246-54931265 None:intergenic 35.0%
AGAAGAAAGTTGTGCTTTGT+AGG + chr4_3:54931253-54931272 Msa0648470:intron 35.0%
GGAGAAAAGAAACAGTAATC+AGG + chr4_3:54931309-54931328 Msa0648470:intron 35.0%
! TCGTTTTCCAGTTCATTATC+TGG - chr4_3:54931335-54931354 None:intergenic 35.0%
CATCAATAGGTGAATTGACT+TGG + chr4_3:54931531-54931550 Msa0648470:exon 35.0%
! ATATTTTGCCCATACGATAG+AGG + chr4_3:54931596-54931615 Msa0648470:three_prime_UTR 35.0%
! TATTTTGCCCATACGATAGA+GGG + chr4_3:54931597-54931616 Msa0648470:three_prime_UTR 35.0%
TTTGTATACGATGTCATTGG+CGG + chr4_3:54931671-54931690 Msa0648470:three_prime_UTR 35.0%
CATCACAATTATTGCTCCTA+TGG - chr4_3:54931769-54931788 None:intergenic 35.0%
TTTGAAAAGGAAAACAAGGG+TGG - chr4_3:54931898-54931917 None:intergenic 35.0%
TAAACCCCAAGCACAAGAAA+GGG + chr4_3:54925966-54925985 Msa0648470:five_prime_UTR 40.0%
AGAGGATTAGGACATAGTGA+AGG - chr4_3:54926619-54926638 None:intergenic 40.0%
CATGATTGAATCAGATGCCT+CGG - chr4_3:54926953-54926972 None:intergenic 40.0%
GTTTAACAAACCGGACTTTC+GGG - chr4_3:54927025-54927044 None:intergenic 40.0%
!! CAGTGAATGGCTTTGAAGAT+TGG - chr4_3:54927229-54927248 None:intergenic 40.0%
TCAACAGTGGGCAAACTTAT+GGG - chr4_3:54927830-54927849 None:intergenic 40.0%
CGCAATTGTTCCAAATGTCT+TGG - chr4_3:54927865-54927884 None:intergenic 40.0%
! AGTGTTGTTAGTGGAGTCAT+GGG + chr4_3:54927893-54927912 Msa0648470:CDS 40.0%
TACAAACCGAGGACGAAAAA+GGG - chr4_3:54928179-54928198 None:intergenic 40.0%
CGCGGATACAAAATTACGAA+AGG + chr4_3:54928267-54928286 Msa0648470:intron 40.0%
TGCGATTGATGAAATTGTGG+AGG + chr4_3:54928368-54928387 Msa0648470:intron 40.0%
CGCCTTGCTTGTATTATGAA+TGG + chr4_3:54928439-54928458 Msa0648470:intron 40.0%
TTTGCTGCCATGGTTGTTTA+CGG + chr4_3:54928518-54928537 Msa0648470:intron 40.0%
! CAGCTCCCTCTAGTTTATAT+GGG + chr4_3:54928572-54928591 Msa0648470:intron 40.0%
GCAGACCCATATAAACTAGA+GGG - chr4_3:54928580-54928599 None:intergenic 40.0%
AGCAGACCCATATAAACTAG+AGG - chr4_3:54928581-54928600 None:intergenic 40.0%
TTTATATGGGTCTGCTGTTC+TGG + chr4_3:54928585-54928604 Msa0648470:intron 40.0%
!!! TTCTGGTTTTAGGTCTGGTT+GGG + chr4_3:54928602-54928621 Msa0648470:intron 40.0%
TTGAGTCCTCCACCTAAATA+CGG + chr4_3:54928674-54928693 Msa0648470:intron 40.0%
! GTATAGTGTTGTTCCAACTG+AGG - chr4_3:54929045-54929064 None:intergenic 40.0%
AGAGACATTGCAAGTTGTTG+AGG + chr4_3:54929230-54929249 Msa0648470:intron 40.0%
ATGTGATGAATTTCAGGAGG+TGG + chr4_3:54929286-54929305 Msa0648470:intron 40.0%
!! AGCCAAAGCATTTGCTGTTA+TGG + chr4_3:54929432-54929451 Msa0648470:CDS 40.0%
!! GCCAAAGCATTTGCTGTTAT+GGG + chr4_3:54929433-54929452 Msa0648470:CDS 40.0%
ACCCATAACAGCAAATGCTT+TGG - chr4_3:54929437-54929456 None:intergenic 40.0%
TTTGTTGCTGGATGTACTAC+TGG + chr4_3:54929609-54929628 Msa0648470:CDS 40.0%
TAAGTAATGATGGCCAGACA+TGG + chr4_3:54929716-54929735 Msa0648470:intron 40.0%
ATTATGCTCCTACACCTCAT+GGG - chr4_3:54929754-54929773 None:intergenic 40.0%
AATTATGCTCCTACACCTCA+TGG - chr4_3:54929755-54929774 None:intergenic 40.0%
!!! GCCTAAGGTTTGCTTTTTCT+TGG + chr4_3:54929816-54929835 Msa0648470:intron 40.0%
CCCAAGAAAAAGCAAACCTT+AGG - chr4_3:54929820-54929839 None:intergenic 40.0%
CGTGTTCACACATATGCAAA+AGG + chr4_3:54930104-54930123 Msa0648470:intron 40.0%
!! GGGAGGATTGGCAAATATTT+TGG - chr4_3:54930239-54930258 None:intergenic 40.0%
AATTGCAAGATTGGGAGGAT+TGG - chr4_3:54930251-54930270 None:intergenic 40.0%
ATTGCGGTTCTGTCTGTTAT+TGG + chr4_3:54930301-54930320 Msa0648470:intron 40.0%
TTGCGGTTCTGTCTGTTATT+GGG + chr4_3:54930302-54930321 Msa0648470:intron 40.0%
AAGTAAGATCCTTGACGACT+TGG - chr4_3:54930333-54930352 None:intergenic 40.0%
! AAAGTGTTTGTCATGGTGTG+GGG + chr4_3:54930430-54930449 Msa0648470:intron 40.0%
GTCTTTGTAGTGCATACTCA+AGG + chr4_3:54930608-54930627 Msa0648470:intron 40.0%
!! AAGCATTGGTAATCATGAGC+CGG + chr4_3:54930666-54930685 Msa0648470:intron 40.0%
GTTGAACTGCATTCACAACA+GGG + chr4_3:54930754-54930773 Msa0648470:intron 40.0%
!!! AGTGCCTTAGTTTTGGAGAA+TGG + chr4_3:54930853-54930872 Msa0648470:intron 40.0%
CTCTATTGAGTGTGGTACAA+AGG + chr4_3:54930891-54930910 Msa0648470:intron 40.0%
CACAAAGTGATGTTCATCCA+GGG + chr4_3:54930935-54930954 Msa0648470:intron 40.0%
CTAGAAGGTTTCTGTCTTTG+TGG + chr4_3:54930963-54930982 Msa0648470:intron 40.0%
CTGCAAGTTCTCAAATCATG+GGG + chr4_3:54931131-54931150 Msa0648470:intron 40.0%
CACAACTTTCTTCTGCAATG+AGG - chr4_3:54931247-54931266 None:intergenic 40.0%
AATCAGGCCAGATAATGAAC+TGG + chr4_3:54931325-54931344 Msa0648470:intron 40.0%
TCCAATGTTTGTGTGGTTGT+AGG + chr4_3:54931432-54931451 Msa0648470:intron 40.0%
ACCTACAACCACACAAACAT+TGG - chr4_3:54931436-54931455 None:intergenic 40.0%
AATGTTTGTGTGGTTGTAGG+TGG + chr4_3:54931435-54931454 Msa0648470:intron 40.0%
TGTCGTCATAGAGAAGTTTC+TGG + chr4_3:54931503-54931522 Msa0648470:CDS 40.0%
! TCATAGAGAAGTTTCTGGAG+AGG + chr4_3:54931508-54931527 Msa0648470:CDS 40.0%
TCACAGAGCTTTCCTAAGTT+CGG - chr4_3:54931706-54931725 None:intergenic 40.0%
TCTTGTGCTTGGGGTTTAGA+TGG - chr4_3:54925964-54925983 None:intergenic 45.0%
CTAAACCCCAAGCACAAGAA+AGG + chr4_3:54925965-54925984 Msa0648470:five_prime_UTR 45.0%
ACAACCCTTTCTTGTGCTTG+GGG - chr4_3:54925973-54925992 None:intergenic 45.0%
CACAACCCTTTCTTGTGCTT+GGG - chr4_3:54925974-54925993 None:intergenic 45.0%
AAGATGAAGATGAACAGGGG+CGG - chr4_3:54926663-54926682 None:intergenic 45.0%
TAATCTGGTGTGTGTGGCTA+TGG - chr4_3:54927157-54927176 None:intergenic 45.0%
AGGCAATAATCTGGTGTGTG+TGG - chr4_3:54927163-54927182 None:intergenic 45.0%
CTCGGTTAGTGATCAGTGAA+TGG - chr4_3:54927242-54927261 None:intergenic 45.0%
TAAAGGTCTTTCCCTCAGCT+CGG - chr4_3:54927260-54927279 None:intergenic 45.0%
CCTTGTGTATTGCGCTACTT+TGG - chr4_3:54927447-54927466 None:intergenic 45.0%
CCAAAGTAGCGCAATACACA+AGG + chr4_3:54927444-54927463 Msa0648470:intron 45.0%
TATGTATCCAATCACGTGCC+CGG + chr4_3:54927574-54927593 Msa0648470:intron 45.0%
! AAATTTTCCGGGCACGTGAT+TGG - chr4_3:54927584-54927603 None:intergenic 45.0%
AAACCTAAGATACGCAAGGC+TGG - chr4_3:54927721-54927740 None:intergenic 45.0%
GCACAAACCTAAGATACGCA+AGG - chr4_3:54927725-54927744 None:intergenic 45.0%
CTCAACAGTGGGCAAACTTA+TGG - chr4_3:54927831-54927850 None:intergenic 45.0%
CATAAGTTTGCCCACTGTTG+AGG + chr4_3:54927829-54927848 Msa0648470:CDS 45.0%
AAATTCGCGGCCAAGACATT+TGG + chr4_3:54927852-54927871 Msa0648470:CDS 45.0%
! CAGTGTTGTTAGTGGAGTCA+TGG + chr4_3:54927892-54927911 Msa0648470:CDS 45.0%
!! ACATTGCCCTTTTTCGTCCT+CGG + chr4_3:54928170-54928189 Msa0648470:intron 45.0%
CTACAAACCGAGGACGAAAA+AGG - chr4_3:54928180-54928199 None:intergenic 45.0%
CGAAAGGGGTTTGGCTAATT+TGG + chr4_3:54928283-54928302 Msa0648470:intron 45.0%
TTGCTGCCATGGTTGTTTAC+GGG + chr4_3:54928519-54928538 Msa0648470:intron 45.0%
! GCAGCTCCCTCTAGTTTATA+TGG + chr4_3:54928571-54928590 Msa0648470:intron 45.0%
!!! TGCTGTTCTGGTTTTAGGTC+TGG + chr4_3:54928597-54928616 Msa0648470:intron 45.0%
!!! GTTCTGGTTTTAGGTCTGGT+TGG + chr4_3:54928601-54928620 Msa0648470:intron 45.0%
! AAACGAGCACCGTATTTAGG+TGG - chr4_3:54928686-54928705 None:intergenic 45.0%
! CCAAAACGAGCACCGTATTT+AGG - chr4_3:54928689-54928708 None:intergenic 45.0%
! CCTAAATACGGTGCTCGTTT+TGG + chr4_3:54928686-54928705 Msa0648470:intron 45.0%
!! ATTTCACTTGGTGGTGGTTG+TGG + chr4_3:54929013-54929032 Msa0648470:intron 45.0%
GTTGTGGTTGTAACCTCAGT+TGG + chr4_3:54929029-54929048 Msa0648470:intron 45.0%
TGAATTTCAGGAGGTGGTCT+TGG + chr4_3:54929292-54929311 Msa0648470:intron 45.0%
! ATCGCCATGGGATTGTTTCT+TGG + chr4_3:54929316-54929335 Msa0648470:CDS 45.0%
TGCTCCAAGAAACAATCCCA+TGG - chr4_3:54929323-54929342 None:intergenic 45.0%
! TGCTGAGTGTGTTGTTGAGA+AGG + chr4_3:54929471-54929490 Msa0648470:CDS 45.0%
GGAGCTGCTATATCAGCAAA+AGG + chr4_3:54929630-54929649 Msa0648470:CDS 45.0%
! AACCTTAGGCTAGTCACTTC+TGG - chr4_3:54929806-54929825 None:intergenic 45.0%
GCAATCTGGTAGGATTGTGT+GGG - chr4_3:54930286-54930305 None:intergenic 45.0%
CACACAATCCTACCAGATTG+CGG + chr4_3:54930285-54930304 Msa0648470:intron 45.0%
TAACAGACAGAACCGCAATC+TGG - chr4_3:54930300-54930319 None:intergenic 45.0%
TGGGATAATCCAAGTCGTCA+AGG + chr4_3:54930321-54930340 Msa0648470:intron 45.0%
AAGTGTTTGTCATGGTGTGG+GGG + chr4_3:54930431-54930450 Msa0648470:intron 45.0%
!! AGCATTGGTAATCATGAGCC+GGG + chr4_3:54930667-54930686 Msa0648470:intron 45.0%
TTCTCTCTTCCAGTCTTCCA+GGG - chr4_3:54930706-54930725 None:intergenic 45.0%
ATTCTCTCTTCCAGTCTTCC+AGG - chr4_3:54930707-54930726 None:intergenic 45.0%
GGTTGAACTGCATTCACAAC+AGG + chr4_3:54930753-54930772 Msa0648470:intron 45.0%
ACAACAGGGACTCCTTACTA+AGG + chr4_3:54930768-54930787 Msa0648470:intron 45.0%
GCACAAAGTGATGTTCATCC+AGG + chr4_3:54930934-54930953 Msa0648470:intron 45.0%
GAAGGTTTCTGTCTTTGTGG+TGG + chr4_3:54930966-54930985 Msa0648470:intron 45.0%
! AAATCATGGGGTTCTGACAG+TGG + chr4_3:54931143-54931162 Msa0648470:intron 45.0%
CTCTATGACGACAGAGAATG+CGG - chr4_3:54931496-54931515 None:intergenic 45.0%
!! GTTTCTGGAGAGGCATCAAT+AGG + chr4_3:54931518-54931537 Msa0648470:CDS 45.0%
ATCACGTCCCTCTATCGTAT+GGG - chr4_3:54931607-54931626 None:intergenic 45.0%
TATCACGTCCCTCTATCGTA+TGG - chr4_3:54931608-54931627 None:intergenic 45.0%
ATACGATAGAGGGACGTGAT+AGG + chr4_3:54931607-54931626 Msa0648470:three_prime_UTR 45.0%
TACGATAGAGGGACGTGATA+GGG + chr4_3:54931608-54931627 Msa0648470:three_prime_UTR 45.0%
AGGAAAGCTCTGTGATGACA+TGG + chr4_3:54931711-54931730 Msa0648470:three_prime_UTR 45.0%
GCACAACCCTTTCTTGTGCT+TGG - chr4_3:54925975-54925994 None:intergenic 50.0%
!! GGAGTTTGTTAGTGAGGGAC+AGG - chr4_3:54926591-54926610 None:intergenic 50.0%
GTCAGTAGGAACTCACCGTA+TGG + chr4_3:54927123-54927142 Msa0648470:intron 50.0%
ACTGATCACTAACCGAGCTG+AGG + chr4_3:54927245-54927264 Msa0648470:intron 50.0%
CTGATCACTAACCGAGCTGA+GGG + chr4_3:54927246-54927265 Msa0648470:intron 50.0%
CAACCAGCCTTGCGTATCTT+AGG + chr4_3:54927715-54927734 Msa0648470:five_prime_UTR 50.0%
CCGCGAATTTCCTCAACAGT+GGG - chr4_3:54927842-54927861 None:intergenic 50.0%
CCCACTGTTGAGGAAATTCG+CGG + chr4_3:54927839-54927858 Msa0648470:CDS 50.0%
TTATTGGAGCGGAGAAGTCG+CGG + chr4_3:54928249-54928268 Msa0648470:intron 50.0%
AGGAGATTAAGGTCCTGTCG+TGG + chr4_3:54928388-54928407 Msa0648470:intron 50.0%
TTAAGGTCCTGTCGTGGAGA+TGG + chr4_3:54928394-54928413 Msa0648470:intron 50.0%
TCAAACTCCATCTCCACGAC+AGG - chr4_3:54928404-54928423 None:intergenic 50.0%
! TATGAATGGTGTTGGGACCC+CGG + chr4_3:54928453-54928472 Msa0648470:intron 50.0%
TACCTACTCACACAATCGCC+GGG - chr4_3:54928474-54928493 None:intergenic 50.0%
CTACCTACTCACACAATCGC+CGG - chr4_3:54928475-54928494 None:intergenic 50.0%
!!! GGTTTTCAGGTTTGCTGCCA+TGG + chr4_3:54928508-54928527 Msa0648470:intron 50.0%
CCAAGACCCGTAAACAACCA+TGG - chr4_3:54928528-54928547 None:intergenic 50.0%
CCATGGTTGTTTACGGGTCT+TGG + chr4_3:54928525-54928544 Msa0648470:intron 50.0%
!!! GGGTCTGCTGTTCTGGTTTT+AGG + chr4_3:54928592-54928611 Msa0648470:intron 50.0%
AGGTCTGGTTGGGTGATGTT+CGG + chr4_3:54928612-54928631 Msa0648470:intron 50.0%
CCTAAAAACCAGCCACAGAC+CGG - chr4_3:54928654-54928673 None:intergenic 50.0%
! GGGATTGTTTCTTGGAGCAC+TGG + chr4_3:54929324-54929343 Msa0648470:CDS 50.0%
CACTTCTGGTCATTCAGCAC+TGG - chr4_3:54929792-54929811 None:intergenic 50.0%
!! GACCAGAAGTGACTAGCCTA+AGG + chr4_3:54929801-54929820 Msa0648470:intron 50.0%
CGCAATCTGGTAGGATTGTG+TGG - chr4_3:54930287-54930306 None:intergenic 50.0%
AGACAGAACCGCAATCTGGT+AGG - chr4_3:54930296-54930315 None:intergenic 50.0%
GGTGTGGGGGTTTCTTCATA+TGG + chr4_3:54930444-54930463 Msa0648470:intron 50.0%
GAGTGCATGCACACAAGCAT+TGG + chr4_3:54930652-54930671 Msa0648470:intron 50.0%
TCTCTCTTCCAGTCTTCCAG+GGG - chr4_3:54930705-54930724 None:intergenic 50.0%
! TCATCCAGGGCACTTCTAGA+AGG + chr4_3:54930948-54930967 Msa0648470:intron 50.0%
!! GAAACCTTCTAGAAGTGCCC+TGG - chr4_3:54930955-54930974 None:intergenic 50.0%
GTTCTGACAGTGGCGCAATA+TGG + chr4_3:54931153-54931172 Msa0648470:intron 50.0%
TGGTCCACAAGCTGCATGTA+TGG + chr4_3:54931455-54931474 Msa0648470:CDS 50.0%
GGTCCACAAGCTGCATGTAT+GGG + chr4_3:54931456-54931475 Msa0648470:CDS 50.0%
CATCCCATACATGCAGCTTG+TGG - chr4_3:54931462-54931481 None:intergenic 50.0%
CGGATGCATCTTCCGAACTT+AGG + chr4_3:54931691-54931710 Msa0648470:three_prime_UTR 50.0%
ATGAAGATGAACAGGGGCGG+AGG - chr4_3:54926660-54926679 None:intergenic 55.0%
TCGACCAGTGACCTAGTGAC+CGG + chr4_3:54926997-54927016 Msa0648470:intron 55.0%
!! ACTTTCGGGTTCCGGTCACT+AGG - chr4_3:54927011-54927030 None:intergenic 55.0%
!! CAAACCGGACTTTCGGGTTC+CGG - chr4_3:54927019-54927038 None:intergenic 55.0%
GAACTCACCGTATGGCTGTG+TGG + chr4_3:54927131-54927150 Msa0648470:intron 55.0%
GCTATGGCCACACAGCCATA+CGG - chr4_3:54927141-54927160 None:intergenic 55.0%
GCCGCGAATTTCCTCAACAG+TGG - chr4_3:54927843-54927862 None:intergenic 55.0%
! GCTGTGCGCAGTGTTGTTAG+TGG + chr4_3:54927884-54927903 Msa0648470:CDS 55.0%
ACCTACTCACACAATCGCCG+GGG - chr4_3:54928473-54928492 None:intergenic 55.0%
TTACGGGTCTTGGCGTGTTG+TGG + chr4_3:54928535-54928554 Msa0648470:intron 55.0%
TACGGGTCTTGGCGTGTTGT+GGG + chr4_3:54928536-54928555 Msa0648470:intron 55.0%
!! TGTTCGGTGCAGTCCTTGTG+TGG + chr4_3:54928628-54928647 Msa0648470:intron 55.0%
!!! CCGGTCTGTGGCTGGTTTTT+AGG + chr4_3:54928651-54928670 Msa0648470:intron 55.0%
! CGAGCACCGTATTTAGGTGG+AGG - chr4_3:54928683-54928702 None:intergenic 55.0%
! AGCTTTTGCGTGTCTTGCGC+AGG + chr4_3:54928734-54928753 Msa0648470:intron 55.0%
! TTTTGCGTGTCTTGCGCAGG+CGG + chr4_3:54928737-54928756 Msa0648470:intron 55.0%
AAGCAAAGCAGATGGGGCGA+AGG + chr4_3:54929398-54929417 Msa0648470:CDS 55.0%
ACACACCTCCCATGAGGTGT+AGG + chr4_3:54929743-54929762 Msa0648470:intron 55.0%
ATGCTCCTACACCTCATGGG+AGG - chr4_3:54929751-54929770 None:intergenic 55.0%
CTTGTATGCCCCTGGAAGAC+TGG + chr4_3:54930694-54930713 Msa0648470:intron 55.0%
GCTGCATGTATGGGATGTGC+TGG + chr4_3:54931465-54931484 Msa0648470:CDS 55.0%
GAGGGACGTGATAGGGTGTA+AGG + chr4_3:54931615-54931634 Msa0648470:three_prime_UTR 55.0%
AGGGAGTCACCACTCACCAC+CGG - chr4_3:54926095-54926114 None:intergenic 60.0%
GGTGAGTGGTGACTCCCTTC+TGG + chr4_3:54926097-54926116 Msa0648470:five_prime_UTR 60.0%
CGGCTGCGGTGAAGAGGATT+AGG - chr4_3:54926631-54926650 None:intergenic 60.0%
ATGAACAGGGGCGGAGGAGA+AGG - chr4_3:54926654-54926673 None:intergenic 60.0%
GGTTCCGGTCACTAGGTCAC+TGG - chr4_3:54927004-54927023 None:intergenic 60.0%
GTGACCGGAACCCGAAAGTC+CGG + chr4_3:54927012-54927031 Msa0648470:intron 60.0%
ACCCCGGCGATTGTGTGAGT+AGG + chr4_3:54928469-54928488 Msa0648470:intron 60.0%
ACGGGTCTTGGCGTGTTGTG+GGG + chr4_3:54928537-54928556 Msa0648470:intron 60.0%
ACTAGAGGGAGCTGCTGTCC+AGG - chr4_3:54928566-54928585 None:intergenic 60.0%
! AGGTGGTCTTGGCATCGCCA+TGG + chr4_3:54929303-54929322 Msa0648470:CDS 60.0%
! GGTGGTCTTGGCATCGCCAT+GGG + chr4_3:54929304-54929323 Msa0648470:CDS 60.0%
AGCAGATGGGGCGAAGGAGT+TGG + chr4_3:54929404-54929423 Msa0648470:CDS 60.0%
GAGGTGTGTCAGGCCATGTC+TGG - chr4_3:54929732-54929751 None:intergenic 60.0%
! CACCTCATGGGAGGTGTGTC+AGG - chr4_3:54929742-54929761 None:intergenic 60.0%
CTCTCCACCGTCCTCCTCTC+CGG + chr4_3:54926073-54926092 Msa0648470:five_prime_UTR 65.0%
CTCACCACCGGAGAGGAGGA+CGG - chr4_3:54926083-54926102 None:intergenic 65.0%
TCCTCCTCTCCGGTGGTGAG+TGG + chr4_3:54926083-54926102 Msa0648470:five_prime_UTR 65.0%
ACCACTCACCACCGGAGAGG+AGG - chr4_3:54926087-54926106 None:intergenic 65.0%
GTCACCACTCACCACCGGAG+AGG - chr4_3:54926090-54926109 None:intergenic 65.0%
AGAAGGCGGCTGCGGTGAAG+AGG - chr4_3:54926637-54926656 None:intergenic 65.0%
AACAGGGGCGGAGGAGAAGG+CGG - chr4_3:54926651-54926670 None:intergenic 65.0%
TGGCGTGTTGTGGGGTGACC+TGG + chr4_3:54928545-54928564 Msa0648470:intron 65.0%
CGGTGCAGTCCTTGTGTGGC+CGG + chr4_3:54928632-54928651 Msa0648470:intron 65.0%
GTCCTTGTGTGGCCGGTCTG+TGG + chr4_3:54928639-54928658 Msa0648470:intron 65.0%
AGCCACAGACCGGCCACACA+AGG - chr4_3:54928644-54928663 None:intergenic 65.0%
TTGTGTGGCCGGTCTGTGGC+TGG + chr4_3:54928643-54928662 Msa0648470:intron 65.0%
GGCCTGACACACCTCCCATG+AGG + chr4_3:54929737-54929756 Msa0648470:intron 65.0%
! CAGGGGCATACAAGCGAGCC+CGG - chr4_3:54930688-54930707 None:intergenic 65.0%
TCCACCGTCCTCCTCTCCGG+TGG + chr4_3:54926076-54926095 Msa0648470:five_prime_UTR 70.0%
ACCACCGGAGAGGAGGACGG+TGG - chr4_3:54926080-54926099 None:intergenic 70.0%
CGGGCTCGCTTGTATGCCCC+TGG + chr4_3:54930686-54930705 Msa0648470:intron 70.0%
GGCGGAGGAGAAGGCGGCTG+CGG - chr4_3:54926645-54926664 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54925915 54931946 54925915 ID=Msa0648470;Name=Msa0648470
chr4_3 mRNA 54925915 54931946 54925915 ID=Msa0648470-mRNA-1;Parent=Msa0648470;Name=Msa0648470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=301|1|1|1|0.6|0.5|6|407|170
chr4_3 exon 54925915 54926118 54925915 ID=Msa0648470-mRNA-1:exon:13941;Parent=Msa0648470-mRNA-1
chr4_3 exon 54926648 54926687 54926648 ID=Msa0648470-mRNA-1:exon:13942;Parent=Msa0648470-mRNA-1
chr4_3 exon 54927695 54927914 54927695 ID=Msa0648470-mRNA-1:exon:13943;Parent=Msa0648470-mRNA-1
chr4_3 exon 54929302 54929492 54929302 ID=Msa0648470-mRNA-1:exon:13944;Parent=Msa0648470-mRNA-1
chr4_3 exon 54929579 54929651 54929579 ID=Msa0648470-mRNA-1:exon:13945;Parent=Msa0648470-mRNA-1
chr4_3 exon 54931454 54931946 54931454 ID=Msa0648470-mRNA-1:exon:13946;Parent=Msa0648470-mRNA-1
chr4_3 five_prime_UTR 54925915 54926118 54925915 ID=Msa0648470-mRNA-1:five_prime_utr;Parent=Msa0648470-mRNA-1
chr4_3 five_prime_UTR 54926648 54926687 54926648 ID=Msa0648470-mRNA-1:five_prime_utr;Parent=Msa0648470-mRNA-1
chr4_3 five_prime_UTR 54927695 54927751 54927695 ID=Msa0648470-mRNA-1:five_prime_utr;Parent=Msa0648470-mRNA-1
chr4_3 CDS 54927752 54927914 54927752 ID=Msa0648470-mRNA-1:cds;Parent=Msa0648470-mRNA-1
chr4_3 CDS 54929302 54929492 54929302 ID=Msa0648470-mRNA-1:cds;Parent=Msa0648470-mRNA-1
chr4_3 CDS 54929579 54929651 54929579 ID=Msa0648470-mRNA-1:cds;Parent=Msa0648470-mRNA-1
chr4_3 CDS 54931454 54931539 54931454 ID=Msa0648470-mRNA-1:cds;Parent=Msa0648470-mRNA-1
chr4_3 three_prime_UTR 54931540 54931946 54931540 ID=Msa0648470-mRNA-1:three_prime_utr;Parent=Msa0648470-mRNA-1
Gene Sequence

>Msa0648470

ATGGCTGATGAGTCGCAAAAAGCTGCTTCAAATGATTCTGTGAACTCAAAAGAAGTCGAGAAGCCTCAAATTCAGCCCATAAGTTTGCCCACTGTTGAGGAAATTCGCGGCCAAGACATTTGGAACAATTGCGCTGTGCGCAGTGTTGTTAGTGGAGTCATGGGAGGTGGTCTTGGCATCGCCATGGGATTGTTTCTTGGAGCACTGGACAACCCTATGATGCAAGATCAAATGACTGGCAAACAGCAGTTTATATTTCAAGCAAAGCAGATGGGGCGAAGGAGTTGGAGTTCAGCCAAAGCATTTGCTGTTATGGGTTTCGTATTCTCAGCTGCTGAGTGTGTTGTTGAGAAGGCACGAGCAAAACATGACATCACAAATACGTTTGTTGCTGGATGTACTACTGGAGCTGCTATATCAGCAAAAGGTGGTCCACAAGCTGCATGTATGGGATGTGCTGGCTTTGCCGCATTCTCTGTCGTCATAGAGAAGTTTCTGGAGAGGCATCAATAG
Protein sequence

>Msa0648470

MADESQKAASNDSVNSKEVEKPQIQPISLPTVEEIRGQDIWNNCAVRSVVSGVMGGGLGIAMGLFLGALDNPMMQDQMTGKQQFIFQAKQMGRRSWSSAKAFAVMGFVFSAAECVVEKARAKHDITNTFVAGCTTGAAISAKGGPQAACMGCAGFAAFSVVIEKFLERHQ*