Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437070 | XP_024627195.1 | 94.767 | 172 | 9 | 0 | 68 | 239 | 1 | 172 | 4.96e-115 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437070 | sp|Q9SLD4|ZAT11_ARATH | 48.864 | 176 | 82 | 6 | 68 | 237 | 1 | 174 | 3.36e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437070 | A0A396H512 | 94.767 | 172 | 9 | 0 | 68 | 239 | 1 | 172 | 2.37e-115 | 336 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0437070 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000820 | Msa0437070 | 0.831651 | 1.479035e-55 | -8.615850e-47 |
| Msa0004480 | Msa0437070 | 0.822503 | 2.287780e-53 | -8.615850e-47 |
| Msa0011050 | Msa0437070 | 0.820380 | 7.070823e-53 | -8.615850e-47 |
| Msa0060070 | Msa0437070 | 0.840717 | 7.349163e-58 | -8.615850e-47 |
| Msa0071480 | Msa0437070 | 0.837847 | 4.083339e-57 | -8.615850e-47 |
| Msa0119440 | Msa0437070 | 0.872896 | 2.234840e-67 | -8.615850e-47 |
| Msa0133100 | Msa0437070 | 0.802825 | 4.669193e-49 | -8.615850e-47 |
| Msa0136630 | Msa0437070 | 0.839136 | 1.898165e-57 | -8.615850e-47 |
| Msa0151220 | Msa0437070 | 0.848031 | 7.942417e-60 | -8.615850e-47 |
| Msa0162690 | Msa0437070 | 0.856683 | 2.726602e-62 | -8.615850e-47 |
| Msa0187310 | Msa0437070 | 0.814713 | 1.339385e-51 | -8.615850e-47 |
| Msa0201570 | Msa0437070 | 0.802414 | 5.674737e-49 | -8.615850e-47 |
| Msa0213430 | Msa0437070 | 0.807835 | 4.163368e-50 | -8.615850e-47 |
| Msa0228530 | Msa0437070 | 0.811001 | 8.710420e-51 | -8.615850e-47 |
| Msa0364790 | Msa0437070 | 0.812753 | 3.618477e-51 | -8.615850e-47 |
| Msa0380600 | Msa0437070 | 0.846677 | 1.869078e-59 | -8.615850e-47 |
| Msa0418400 | Msa0437070 | 0.838703 | 2.456453e-57 | -8.615850e-47 |
| Msa0418410 | Msa0437070 | 0.817909 | 2.581416e-52 | -8.615850e-47 |
| Msa0430240 | Msa0437070 | 0.846953 | 1.570983e-59 | -8.615850e-47 |
| Msa0437070 | Msa0463490 | 0.846921 | 1.602498e-59 | -8.615850e-47 |
| Msa0437070 | Msa0472710 | 0.846600 | 1.961137e-59 | -8.615850e-47 |
| Msa0437070 | Msa0472720 | 0.847398 | 1.186018e-59 | -8.615850e-47 |
| Msa0437070 | Msa0472770 | 0.842197 | 2.994595e-58 | -8.615850e-47 |
| Msa0437070 | Msa0482280 | 0.820255 | 7.556678e-53 | -8.615850e-47 |
| Msa0437070 | Msa0484800 | 0.810350 | 1.204272e-50 | -8.615850e-47 |
| Msa0437070 | Msa0500400 | 0.816968 | 4.206240e-52 | -8.615850e-47 |
| Msa0437070 | Msa0556160 | 0.811694 | 6.159892e-51 | -8.615850e-47 |
| Msa0437070 | Msa0572560 | 0.813413 | 2.591681e-51 | -8.615850e-47 |
| Msa0437070 | Msa0599140 | 0.800625 | 1.320121e-48 | -8.615850e-47 |
| Msa0437070 | Msa0718800 | 0.814777 | 1.296391e-51 | -8.615850e-47 |
| Msa0437070 | Msa0748660 | 0.879603 | 1.088609e-69 | -8.615850e-47 |
| Msa0437070 | Msa0775920 | 0.813132 | 2.987656e-51 | -8.615850e-47 |
| Msa0437070 | Msa0813260 | 0.823217 | 1.559819e-53 | -8.615850e-47 |
| Msa0437070 | Msa0819980 | 0.808609 | 2.847122e-50 | -8.615850e-47 |
| Msa0437070 | Msa0853810 | 0.802131 | 6.488149e-49 | -8.615850e-47 |
| Msa0437070 | Msa0860250 | 0.879836 | 8.996110e-70 | -8.615850e-47 |
| Msa0437070 | Msa0870470 | 0.800462 | 1.425377e-48 | -8.615850e-47 |
| Msa0437070 | Msa0899400 | 0.813061 | 3.096356e-51 | -8.615850e-47 |
| Msa0437070 | Msa0968050 | 0.867549 | 1.260859e-65 | -8.615850e-47 |
| Msa0437070 | Msa0973070 | 0.827498 | 1.513653e-54 | -8.615850e-47 |
| Msa0437070 | Msa0999160 | 0.831974 | 1.231061e-55 | -8.615850e-47 |
| Msa0437070 | Msa1063370 | 0.805743 | 1.151946e-49 | -8.615850e-47 |
| Msa0437070 | Msa1078330 | 0.916571 | 1.517671e-85 | -8.615850e-47 |
| Msa0437070 | Msa1108720 | 0.839973 | 1.150195e-57 | -8.615850e-47 |
| Msa0437070 | Msa1123720 | 0.983141 | 6.119546e-157 | -8.615850e-47 |
| Msa0437070 | Msa1152410 | 0.805749 | 1.148556e-49 | -8.615850e-47 |
| Msa0437070 | Msa1156820 | 0.801679 | 8.034919e-49 | -8.615850e-47 |
| Msa0437070 | Msa1169860 | 0.950372 | 1.887522e-108 | -8.615850e-47 |
| Msa0437070 | Msa1184750 | 0.807235 | 5.581882e-50 | -8.615850e-47 |
| Msa0437070 | Msa1225100 | 0.802550 | 5.318795e-49 | -8.615850e-47 |
| Msa0437070 | Msa1258470 | 0.817684 | 2.901957e-52 | -8.615850e-47 |
| Msa0437070 | Msa1258670 | 0.816522 | 5.295738e-52 | -8.615850e-47 |
| Msa0437070 | Msa1280150 | 0.803995 | 2.671786e-49 | -8.615850e-47 |
| Msa0437070 | Msa1280170 | 0.806113 | 9.630528e-50 | -8.615850e-47 |
| Msa0437070 | Msa1285200 | 0.830658 | 2.594602e-55 | -8.615850e-47 |
| Msa0437070 | Msa1323280 | 0.812676 | 3.761490e-51 | -8.615850e-47 |
| Msa0437070 | Msa1329870 | 0.803921 | 2.767315e-49 | -8.615850e-47 |
| Msa0437070 | Msa1361250 | 0.867828 | 1.026105e-65 | -8.615850e-47 |
| Msa0437070 | Msa1363810 | 0.811843 | 5.716347e-51 | -8.615850e-47 |
| Msa0437070 | Msa1389760 | 0.823588 | 1.277528e-53 | -8.615850e-47 |
| Msa0437070 | Msa1405220 | 0.807740 | 4.359837e-50 | -8.615850e-47 |
| Msa0437070 | Msa1421900 | 0.851114 | 1.095866e-60 | -8.615850e-47 |
| Msa0246590 | Msa0437070 | 0.805917 | 1.059058e-49 | -8.615850e-47 |
| Msa0259440 | Msa0437070 | 0.849666 | 2.792513e-60 | -8.615850e-47 |
| Msa0259580 | Msa0437070 | 0.852713 | 3.854271e-61 | -8.615850e-47 |
| Msa0282720 | Msa0437070 | 0.808903 | 2.463943e-50 | -8.615850e-47 |
| Msa0285070 | Msa0437070 | 0.826348 | 2.850246e-54 | -8.615850e-47 |
| Msa0305620 | Msa0437070 | 0.864898 | 8.727739e-65 | -8.615850e-47 |
| Msa0358110 | Msa0437070 | 0.846411 | 2.208930e-59 | -8.615850e-47 |
| Msa0358120 | Msa0437070 | 0.846266 | 2.419698e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437070 | MtrunA17_Chr7g0263121 | 94.767 | 172 | 9 | 0 | 68 | 239 | 1 | 172 | 4.57e-119 | 336 |
| Msa0437070 | MtrunA17_Chr7g0263131 | 68.452 | 168 | 39 | 4 | 67 | 233 | 2 | 156 | 3.54e-71 | 215 |
| Msa0437070 | MtrunA17_Chr1g0182181 | 65.269 | 167 | 50 | 4 | 72 | 236 | 2 | 162 | 3.83e-70 | 212 |
| Msa0437070 | MtrunA17_Chr1g0182161 | 60.795 | 176 | 52 | 7 | 68 | 236 | 2 | 167 | 5.36e-59 | 184 |
| Msa0437070 | MtrunA17_Chr1g0212561 | 39.901 | 203 | 81 | 8 | 68 | 235 | 1 | 197 | 5.43e-33 | 119 |
| Msa0437070 | MtrunA17_Chr7g0222831 | 52.586 | 116 | 49 | 3 | 68 | 183 | 1 | 110 | 2.06e-31 | 114 |
| Msa0437070 | MtrunA17_Chr7g0222831 | 36.129 | 155 | 60 | 5 | 3 | 149 | 1 | 124 | 7.56e-18 | 78.6 |
| Msa0437070 | MtrunA17_Chr2g0327901 | 48.667 | 150 | 51 | 6 | 76 | 224 | 4 | 128 | 4.76e-30 | 108 |
| Msa0437070 | MtrunA17_Chr2g0320311 | 34.703 | 219 | 76 | 8 | 73 | 225 | 66 | 283 | 4.75e-23 | 94.7 |
| Msa0437070 | MtrunA17_Chr2g0320311 | 32.576 | 132 | 50 | 4 | 29 | 134 | 119 | 237 | 4.28e-11 | 61.6 |
| Msa0437070 | MtrunA17_Chr1g0180311 | 40.136 | 147 | 47 | 3 | 81 | 186 | 80 | 226 | 5.13e-22 | 92.0 |
| Msa0437070 | MtrunA17_Chr1g0180311 | 34.503 | 171 | 85 | 6 | 16 | 160 | 80 | 249 | 4.03e-12 | 64.7 |
| Msa0437070 | MtrunA17_Chr1g0197281 | 34.450 | 209 | 72 | 8 | 78 | 223 | 98 | 304 | 5.18e-22 | 92.8 |
| Msa0437070 | MtrunA17_Chr1g0197281 | 34.746 | 118 | 41 | 2 | 37 | 134 | 156 | 257 | 7.70e-13 | 67.0 |
| Msa0437070 | MtrunA17_Chr1g0207451 | 50.000 | 100 | 44 | 2 | 82 | 181 | 60 | 153 | 4.68e-21 | 88.6 |
| Msa0437070 | MtrunA17_Chr4g0027991 | 36.364 | 165 | 45 | 5 | 111 | 225 | 113 | 267 | 2.36e-20 | 87.4 |
| Msa0437070 | MtrunA17_Chr7g0231181 | 41.379 | 116 | 52 | 6 | 111 | 223 | 240 | 342 | 2.93e-16 | 77.0 |
| Msa0437070 | MtrunA17_Chr1g0188901 | 39.516 | 124 | 58 | 3 | 111 | 217 | 60 | 183 | 5.53e-16 | 73.6 |
| Msa0437070 | MtrunA17_Chr1g0152661 | 38.462 | 117 | 55 | 2 | 82 | 181 | 43 | 159 | 6.39e-16 | 74.3 |
| Msa0437070 | MtrunA17_Chr3g0134711 | 40.171 | 117 | 49 | 3 | 82 | 181 | 52 | 164 | 4.18e-15 | 72.0 |
| Msa0437070 | MtrunA17_Chr4g0012691 | 37.903 | 124 | 59 | 4 | 111 | 217 | 220 | 342 | 7.94e-15 | 72.8 |
| Msa0437070 | MtrunA17_Chr4g0012691 | 43.269 | 104 | 33 | 5 | 35 | 133 | 218 | 300 | 2.64e-12 | 65.5 |
| Msa0437070 | MtrunA17_Chr5g0425411 | 31.132 | 212 | 93 | 6 | 3 | 181 | 15 | 206 | 1.37e-12 | 65.5 |
| Msa0437070 | MtrunA17_Chr4g0061301 | 41.071 | 112 | 53 | 4 | 35 | 133 | 346 | 457 | 5.22e-12 | 65.1 |
| Msa0437070 | MtrunA17_Chr5g0448611 | 30.978 | 184 | 86 | 4 | 39 | 181 | 50 | 233 | 8.36e-12 | 63.5 |
| Msa0437070 | MtrunA17_Chr4g0012791 | 37.391 | 115 | 61 | 3 | 30 | 133 | 220 | 334 | 8.98e-12 | 64.3 |
| Msa0437070 | MtrunA17_Chr4g0037041 | 37.647 | 85 | 45 | 1 | 97 | 181 | 19 | 95 | 6.05e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437070 | AT2G37430.1 | 48.864 | 176 | 82 | 6 | 68 | 237 | 1 | 174 | 3.42e-45 | 149 |
| Msa0437070 | AT3G53600.1 | 45.556 | 180 | 79 | 6 | 68 | 237 | 1 | 171 | 1.29e-39 | 135 |
| Msa0437070 | AT2G28710.1 | 45.294 | 170 | 71 | 8 | 68 | 231 | 1 | 154 | 7.83e-33 | 117 |
| Msa0437070 | AT3G46090.1 | 43.023 | 172 | 79 | 6 | 68 | 230 | 2 | 163 | 6.29e-28 | 105 |
| Msa0437070 | AT5G59820.1 | 40.698 | 172 | 70 | 8 | 73 | 230 | 6 | 159 | 1.84e-26 | 100 |
| Msa0437070 | AT5G59820.1 | 35.507 | 138 | 53 | 5 | 15 | 147 | 13 | 119 | 1.04e-12 | 64.3 |
| Msa0437070 | AT3G46080.1 | 39.181 | 171 | 85 | 5 | 68 | 230 | 2 | 161 | 1.23e-24 | 96.3 |
| Msa0437070 | AT2G28200.1 | 33.163 | 196 | 81 | 7 | 78 | 225 | 73 | 266 | 2.83e-24 | 98.2 |
| Msa0437070 | AT2G28200.1 | 39.496 | 119 | 52 | 4 | 28 | 134 | 103 | 213 | 1.57e-12 | 65.9 |
| Msa0437070 | AT3G46070.1 | 36.000 | 175 | 74 | 6 | 68 | 222 | 1 | 157 | 6.42e-22 | 89.4 |
| Msa0437070 | AT5G03510.1 | 37.306 | 193 | 74 | 8 | 78 | 223 | 69 | 261 | 9.18e-21 | 89.0 |
| Msa0437070 | AT5G03510.1 | 35.526 | 152 | 63 | 4 | 13 | 134 | 69 | 215 | 4.85e-17 | 79.0 |
| Msa0437070 | AT4G35280.1 | 34.722 | 216 | 92 | 9 | 39 | 217 | 79 | 282 | 2.34e-20 | 87.8 |
| Msa0437070 | AT4G35280.1 | 33.775 | 151 | 82 | 4 | 13 | 163 | 138 | 270 | 5.60e-11 | 61.6 |
| Msa0437070 | AT5G04390.1 | 29.870 | 231 | 83 | 7 | 75 | 226 | 93 | 323 | 4.96e-20 | 87.8 |
| Msa0437070 | AT2G45120.1 | 36.047 | 172 | 82 | 6 | 81 | 231 | 150 | 314 | 3.26e-19 | 85.1 |
| Msa0437070 | AT3G10470.1 | 45.192 | 104 | 26 | 3 | 111 | 183 | 182 | 285 | 3.55e-18 | 83.2 |
| Msa0437070 | AT3G10470.1 | 38.182 | 110 | 49 | 3 | 37 | 134 | 182 | 284 | 1.35e-13 | 69.7 |
| Msa0437070 | AT1G02030.1 | 50.000 | 78 | 38 | 1 | 111 | 187 | 160 | 237 | 5.61e-18 | 80.9 |
| Msa0437070 | AT1G02030.1 | 36.923 | 130 | 45 | 4 | 16 | 133 | 127 | 231 | 2.21e-11 | 62.4 |
| Msa0437070 | AT3G60580.1 | 34.302 | 172 | 79 | 7 | 81 | 228 | 126 | 287 | 6.08e-18 | 81.3 |
| Msa0437070 | AT3G49930.1 | 38.393 | 112 | 57 | 3 | 82 | 181 | 60 | 171 | 8.06e-17 | 76.6 |
| Msa0437070 | AT2G17180.1 | 29.665 | 209 | 110 | 5 | 39 | 217 | 67 | 268 | 1.60e-16 | 77.0 |
| Msa0437070 | AT3G19580.1 | 38.462 | 117 | 55 | 3 | 82 | 181 | 71 | 187 | 9.72e-16 | 74.7 |
| Msa0437070 | AT3G19580.2 | 38.462 | 117 | 55 | 3 | 82 | 181 | 71 | 187 | 9.72e-16 | 74.7 |
| Msa0437070 | AT5G43170.1 | 37.589 | 141 | 72 | 5 | 82 | 222 | 50 | 174 | 2.03e-15 | 72.4 |
| Msa0437070 | AT5G04340.1 | 37.086 | 151 | 72 | 5 | 51 | 181 | 23 | 170 | 4.26e-15 | 72.4 |
| Msa0437070 | AT1G49900.1 | 41.284 | 109 | 49 | 5 | 88 | 181 | 159 | 267 | 1.01e-13 | 70.5 |
| Msa0437070 | AT1G49900.1 | 42.254 | 71 | 41 | 0 | 111 | 181 | 750 | 820 | 2.63e-12 | 66.6 |
| Msa0437070 | AT1G27730.1 | 39.815 | 108 | 53 | 3 | 82 | 181 | 55 | 158 | 1.33e-13 | 68.2 |
| Msa0437070 | AT5G67450.1 | 34.437 | 151 | 74 | 4 | 56 | 181 | 36 | 186 | 4.16e-13 | 67.0 |
| Msa0437070 | AT5G56200.1 | 40.000 | 100 | 39 | 2 | 113 | 191 | 344 | 443 | 1.16e-12 | 67.4 |
| Msa0437070 | AT5G56200.1 | 39.394 | 99 | 47 | 3 | 39 | 133 | 344 | 433 | 1.61e-11 | 63.9 |
| Msa0437070 | AT1G02040.1 | 33.129 | 163 | 72 | 3 | 56 | 181 | 85 | 247 | 1.42e-12 | 66.6 |
Find 37 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATCTCTTTGTCTCTTCA+TGG | 0.186634 | 3_2:+91046826 | None:intergenic |
| CAGCTAGTTTCATTCTCTTA+TGG | 0.261088 | 3_2:+91050823 | None:intergenic |
| TTCTCTTATGGCTAGCTCTA+TGG | 0.296077 | 3_2:+91050835 | None:intergenic |
| TATTGTTATGTTGTTGATGT+TGG | 0.324104 | 3_2:+91046750 | None:intergenic |
| AATGATTTGAAGTTGTTGTT+TGG | 0.347319 | 3_2:-91046362 | Msa0437070:CDS |
| ATTGTTATGTTGTTGATGTT+GGG | 0.351718 | 3_2:+91046751 | None:intergenic |
| CTATTCAATCTCTTTAAAAC+TGG | 0.356656 | 3_2:+91046428 | None:intergenic |
| CAACAGAAAAGCTATGAAAA+TGG | 0.359512 | 3_2:-91050915 | Msa0437070:CDS |
| AGGATTAGAAAGCATAGATT+TGG | 0.368671 | 3_2:-91046801 | Msa0437070:CDS |
| CATAAAAGATCAAAGCTAGA+AGG | 0.385523 | 3_2:-91046629 | Msa0437070:CDS |
| TTCATAACAACTTGCTCCAT+TGG | 0.405809 | 3_2:+91046455 | None:intergenic |
| AATTCTACATCTTTGAGCTT+AGG | 0.417627 | 3_2:-91046590 | Msa0437070:CDS |
| GAAGTTGTTGTTTGGAAAGA+TGG | 0.423340 | 3_2:-91046354 | Msa0437070:CDS |
| CAAACTAAAACATCAAGATT+AGG | 0.441068 | 3_2:+91046329 | None:intergenic |
| GGACTTGAACTTGACACCAT+TGG | 0.443698 | 3_2:-91046387 | Msa0437070:CDS |
| AAGAGACAAAGAGATATAGA+AGG | 0.447668 | 3_2:-91046821 | Msa0437070:CDS |
| AAGAGACAAAGGAGCAATGA+AGG | 0.461364 | 3_2:-91050987 | Msa0437070:CDS |
| TGCATGAATGTTCCATTTGT+GGG | 0.475350 | 3_2:-91046553 | Msa0437070:CDS |
| TTGTTATGTTGTTGATGTTG+GGG | 0.502259 | 3_2:+91046752 | None:intergenic |
| ATGCATGAATGTTCCATTTG+TGG | 0.513081 | 3_2:-91046554 | Msa0437070:CDS |
| TAAAGAGATTGAATAGTGCA+AGG | 0.521881 | 3_2:-91046421 | Msa0437070:CDS |
| CAACGAAGAGGTTTCTCCAA+TGG | 0.523977 | 3_2:-91046471 | Msa0437070:CDS |
| GGCTAGCTCTATGGCCACCA+AGG | 0.538489 | 3_2:+91050844 | None:intergenic |
| ATAAAAGATCAAAGCTAGAA+GGG | 0.549441 | 3_2:-91046628 | Msa0437070:CDS |
| AAAGAGATTGAATAGTGCAA+GGG | 0.553931 | 3_2:-91046420 | Msa0437070:CDS |
| GTGGCCACCTAGTGCTTGAA+AGG | 0.555432 | 3_2:+91046661 | None:intergenic |
| TAGTGCAAGGGTAATGTGCT+TGG | 0.582174 | 3_2:-91046408 | Msa0437070:CDS |
| TTCTCATCCTTTCAAGCACT+AGG | 0.596938 | 3_2:-91046668 | Msa0437070:CDS |
| TAAAGCTATTATCAACGAAG+AGG | 0.599520 | 3_2:-91046483 | Msa0437070:CDS |
| GCTAGCTCTATGGCCACCAA+GGG | 0.600232 | 3_2:+91050845 | None:intergenic |
| AACTTCAAATCATTCTCCAA+TGG | 0.606116 | 3_2:+91046371 | None:intergenic |
| CATTGGGTGGACACATGAGA+AGG | 0.615753 | 3_2:-91046508 | Msa0437070:CDS |
| TCATTGGGACAAGCATTGGG+TGG | 0.622140 | 3_2:-91046521 | Msa0437070:CDS |
| TGATGGCAATGAAGAGACAA+AGG | 0.625383 | 3_2:-91050998 | Msa0437070:CDS |
| TAAAAGATCAAAGCTAGAAG+GGG | 0.632211 | 3_2:-91046627 | Msa0437070:CDS |
| AAGAGAATGAAACTAGCTGA+AGG | 0.634408 | 3_2:-91050819 | Msa0437070:intron |
| TCATCCTTTCAAGCACTAGG+TGG | 0.660073 | 3_2:-91046665 | Msa0437070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAGTCAATAAATAATA+TGG | + | chr3_2:91047023-91047042 | None:intergenic | 10.0% |
| !! | AAAATCAAAAATAGAAAATA+TGG | - | chr3_2:91047911-91047930 | Msa0437070:intron | 10.0% |
| !!! | TAATTTTGTTTTGAAATTTT+GGG | + | chr3_2:91048179-91048198 | None:intergenic | 10.0% |
| !!! | TTAATTTTGTTTTGAAATTT+TGG | + | chr3_2:91048180-91048199 | None:intergenic | 10.0% |
| !! | TAAATGAATAAATTAAACAA+TGG | - | chr3_2:91048770-91048789 | Msa0437070:intron | 10.0% |
| !!! | ATTTTATTCAACTATATTTA+TGG | + | chr3_2:91050268-91050287 | None:intergenic | 10.0% |
| !!! | ATATTCATTCATTTTGTAAT+TGG | - | chr3_2:91046951-91046970 | Msa0437070:intron | 15.0% |
| !! | TTAAAAAGAATGAAATTTAC+AGG | + | chr3_2:91047071-91047090 | None:intergenic | 15.0% |
| !! | ATTAATCACATTCAAAATTA+TGG | - | chr3_2:91047266-91047285 | Msa0437070:intron | 15.0% |
| !!! | TTACATAAAAGTATTTTTTG+TGG | - | chr3_2:91047720-91047739 | Msa0437070:intron | 15.0% |
| !!! | TACATAAAAGTATTTTTTGT+GGG | - | chr3_2:91047721-91047740 | Msa0437070:intron | 15.0% |
| !!! | TTTGAGAATATTATCAATTT+TGG | + | chr3_2:91047888-91047907 | None:intergenic | 15.0% |
| !!! | CATTAAACAACTAAATTTTT+TGG | - | chr3_2:91048200-91048219 | Msa0437070:intron | 15.0% |
| !! | ATTTCGTAATAAATTAAGTT+CGG | - | chr3_2:91048348-91048367 | Msa0437070:intron | 15.0% |
| !! | TCACATTTATATATCAAAAT+TGG | - | chr3_2:91048687-91048706 | Msa0437070:intron | 15.0% |
| !! | ATCAAAGAAAAAAAAAAGAA+AGG | - | chr3_2:91050206-91050225 | Msa0437070:intron | 15.0% |
| !!! | TTTTGCAATAATTTGATTGA+TGG | + | chr3_2:91046683-91046702 | None:intergenic | 20.0% |
| !! | GTCTTAAAAGATTAAGAAAA+AGG | + | chr3_2:91047204-91047223 | None:intergenic | 20.0% |
| !! | TAAGACATTTAAACTAAAGT+TGG | - | chr3_2:91047218-91047237 | Msa0437070:intron | 20.0% |
| !!! | TGGAATCAATTATAACATTT+TGG | + | chr3_2:91047813-91047832 | None:intergenic | 20.0% |
| !!! | AATCATATTTAAGGTGTATT+TGG | - | chr3_2:91048118-91048137 | Msa0437070:intron | 20.0% |
| !!! | AACAACTAAATTTTTTGGAA+TGG | - | chr3_2:91048205-91048224 | Msa0437070:intron | 20.0% |
| !!! | GTCAAAAAATAATTTTGAGA+TGG | - | chr3_2:91048277-91048296 | Msa0437070:intron | 20.0% |
| !! | ATTACGAAATATTGTAACAA+TGG | + | chr3_2:91048338-91048357 | None:intergenic | 20.0% |
| !! | ATCATAGAATAAAAGATATG+CGG | + | chr3_2:91048396-91048415 | None:intergenic | 20.0% |
| !! | CAACTTATGTTTAAATACTA+CGG | - | chr3_2:91048440-91048459 | Msa0437070:intron | 20.0% |
| !!! | AATGTGAAAATTGTTGATTA+TGG | + | chr3_2:91048674-91048693 | None:intergenic | 20.0% |
| !! | GATTTCAATGTTAGAATTTA+CGG | - | chr3_2:91048810-91048829 | Msa0437070:intron | 20.0% |
| !! | ATGAATAATTAGTGAATCTA+TGG | + | chr3_2:91049613-91049632 | None:intergenic | 20.0% |
| !!! | TGTTTATGTTTATGTTGTTT+GGG | + | chr3_2:91049744-91049763 | None:intergenic | 20.0% |
| !! | TTGTTTATGTTTATGTTGTT+TGG | + | chr3_2:91049745-91049764 | None:intergenic | 20.0% |
| !! | TGATGTATTGTAGTTTAATA+CGG | + | chr3_2:91049875-91049894 | None:intergenic | 20.0% |
| !! | TTATTCAACTATATTTATGG+AGG | + | chr3_2:91050265-91050284 | None:intergenic | 20.0% |
| !! | TTATATTTATAAGCCATAAC+TGG | + | chr3_2:91050314-91050333 | None:intergenic | 20.0% |
| !! | ATTAATTGGTGAATAACATT+TGG | + | chr3_2:91050347-91050366 | None:intergenic | 20.0% |
| ! | ATTGAATAGTAAGAGGATTA+TGG | - | chr3_2:91046720-91046739 | Msa0437070:CDS | 25.0% |
| ! | TTGAATAGTAAGAGGATTAT+GGG | - | chr3_2:91046721-91046740 | Msa0437070:CDS | 25.0% |
| ! | ATTGAAGTAAATTAACCAGT+TGG | + | chr3_2:91047114-91047133 | None:intergenic | 25.0% |
| ! | GCTAATGTATCAATATTACA+AGG | + | chr3_2:91047182-91047201 | None:intergenic | 25.0% |
| ! | AATCATGTGTCATATGTATA+GGG | + | chr3_2:91047249-91047268 | None:intergenic | 25.0% |
| ! | TAATCATGTGTCATATGTAT+AGG | + | chr3_2:91047250-91047269 | None:intergenic | 25.0% |
| ! | GTTAATCACACTAAAAAATG+TGG | + | chr3_2:91047417-91047436 | None:intergenic | 25.0% |
| ! | AATGGAAAAATAGAGACAAA+AGG | + | chr3_2:91047501-91047520 | None:intergenic | 25.0% |
| ! | ACAATCAAAACTTTACGTTA+GGG | + | chr3_2:91047607-91047626 | None:intergenic | 25.0% |
| ! | AACAATCAAAACTTTACGTT+AGG | + | chr3_2:91047608-91047627 | None:intergenic | 25.0% |
| !!! | CGTAAAGTTTTGATTGTTTA+AGG | - | chr3_2:91047610-91047629 | Msa0437070:intron | 25.0% |
| !!! | GTATCGTATGTTTGATTTTA+TGG | - | chr3_2:91047651-91047670 | Msa0437070:intron | 25.0% |
| !! | TTGTAGCTTTTACATTTAAG+TGG | + | chr3_2:91047833-91047852 | None:intergenic | 25.0% |
| !!! | AAAATTATTTTTTGACCACC+TGG | + | chr3_2:91048273-91048292 | None:intergenic | 25.0% |
| ! | TATGTGACAATGTTATAAGA+TGG | + | chr3_2:91048484-91048503 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTCAATAGTCTAG+TGG | + | chr3_2:91048618-91048637 | None:intergenic | 25.0% |
| ! | TTGTCACATATCAATAACTA+CGG | - | chr3_2:91048647-91048666 | Msa0437070:intron | 25.0% |
| ! | ATGTGAAAAATGTTCTCTAT+GGG | + | chr3_2:91048900-91048919 | None:intergenic | 25.0% |
| ! | AATGTGAAAAATGTTCTCTA+TGG | + | chr3_2:91048901-91048920 | None:intergenic | 25.0% |
| ! | TTCACATTTAGATACAAAAG+TGG | - | chr3_2:91048913-91048932 | Msa0437070:intron | 25.0% |
| ! | TGTGTACATCATGAAAATAT+TGG | + | chr3_2:91049018-91049037 | None:intergenic | 25.0% |
| ! | CATTATACTCTTAAATGCAT+TGG | - | chr3_2:91049283-91049302 | Msa0437070:intron | 25.0% |
| ! | GAATTAATAAAGCTTCAAGA+TGG | + | chr3_2:91049497-91049516 | None:intergenic | 25.0% |
| ! | TAGTACAACATTTAAACAAG+TGG | - | chr3_2:91049582-91049601 | Msa0437070:intron | 25.0% |
| !! | GTTTAACTATTGTCTCTTTT+GGG | + | chr3_2:91049850-91049869 | None:intergenic | 25.0% |
| !! | TGTTTAACTATTGTCTCTTT+TGG | + | chr3_2:91049851-91049870 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAAGAAAGGATG+AGG | - | chr3_2:91050212-91050231 | Msa0437070:intron | 25.0% |
| ! | GTTTATGAATGAAATGTGAT+GGG | + | chr3_2:91050401-91050420 | None:intergenic | 25.0% |
| ! | AGTTTATGAATGAAATGTGA+TGG | + | chr3_2:91050402-91050421 | None:intergenic | 25.0% |
| ! | ATTGTTATGTTGTTGATGTT+GGG | + | chr3_2:91050576-91050595 | None:intergenic | 25.0% |
| ! | TATTGTTATGTTGTTGATGT+TGG | + | chr3_2:91050577-91050596 | None:intergenic | 25.0% |
| ! | ATAAAAGATCAAAGCTAGAA+GGG | - | chr3_2:91050696-91050715 | Msa0437070:intron | 25.0% |
| !!! | CTATTCAATCTCTTTAAAAC+TGG | + | chr3_2:91050899-91050918 | None:intergenic | 25.0% |
| !! | AATGATTTGAAGTTGTTGTT+TGG | - | chr3_2:91050962-91050981 | Msa0437070:CDS | 25.0% |
| ! | CAAACTAAAACATCAAGATT+AGG | + | chr3_2:91050998-91051017 | None:intergenic | 25.0% |
| ! | TTTTCATAGCTTTTCTGTTG+TGG | + | chr3_2:91046409-91046428 | None:intergenic | 30.0% |
| CAACAGAAAAGCTATGAAAA+TGG | - | chr3_2:91046409-91046428 | Msa0437070:CDS | 30.0% | |
| ! | ATAGAACACTCATGCATTTT+TGG | + | chr3_2:91046577-91046596 | None:intergenic | 30.0% |
| ATAGAGCTGTCATAAATGAA+GGG | - | chr3_2:91046650-91046669 | Msa0437070:CDS | 30.0% | |
| CTATTCAATCTCTTCAAAAC+TGG | + | chr3_2:91046709-91046728 | None:intergenic | 30.0% | |
| TGAAGAGATTGAATAGTAAG+AGG | - | chr3_2:91046713-91046732 | Msa0437070:CDS | 30.0% | |
| TGAATAGTAAGAGGATTATG+GGG | - | chr3_2:91046722-91046741 | Msa0437070:CDS | 30.0% | |
| CAAAACAAAGAAAGTGGAAT+TGG | + | chr3_2:91046814-91046833 | None:intergenic | 30.0% | |
| GTTGATCAAAACAAAGAAAG+TGG | + | chr3_2:91046820-91046839 | None:intergenic | 30.0% | |
| !! | TGGTGCTGAAATATCAATTT+TGG | + | chr3_2:91047003-91047022 | None:intergenic | 30.0% |
| GGTTAATTCACTTGAATGAA+TGG | - | chr3_2:91047287-91047306 | Msa0437070:intron | 30.0% | |
| ! | TTCATTTCAGGTCAAAATTG+TGG | + | chr3_2:91047370-91047389 | None:intergenic | 30.0% |
| !!! | ATTTTTTTCTGCACTACACA+TGG | + | chr3_2:91047439-91047458 | None:intergenic | 30.0% |
| ATGTGTAGTGCAGAAAAAAA+TGG | - | chr3_2:91047438-91047457 | Msa0437070:intron | 30.0% | |
| TGTGTAGTGCAGAAAAAAAT+GGG | - | chr3_2:91047439-91047458 | Msa0437070:intron | 30.0% | |
| GGGTGTCTAAATATTATTGT+TGG | - | chr3_2:91047459-91047478 | Msa0437070:intron | 30.0% | |
| AGAAAAGTTAGAACTAGCAA+TGG | + | chr3_2:91047519-91047538 | None:intergenic | 30.0% | |
| !!! | TTTTAGAACTAGTTCTAAGC+TGG | + | chr3_2:91047865-91047884 | None:intergenic | 30.0% |
| TGAGTTTGTAAGGTTAAACA+TGG | + | chr3_2:91047942-91047961 | None:intergenic | 30.0% | |
| TGATCAAACTTGAGTTTGTA+AGG | + | chr3_2:91047952-91047971 | None:intergenic | 30.0% | |
| AGCACTAAGAAATCTCTTAA+CGG | - | chr3_2:91047996-91048015 | Msa0437070:intron | 30.0% | |
| AAGGTGTATTTGGAAGAAAA+AGG | - | chr3_2:91048128-91048147 | Msa0437070:intron | 30.0% | |
| TGTCACATATCAATAACTAC+GGG | - | chr3_2:91048648-91048667 | Msa0437070:intron | 30.0% | |
| !! | TTCCACTTTTATCATCCTAA+CGG | - | chr3_2:91048710-91048729 | Msa0437070:intron | 30.0% |
| ACGGTGTACAAATTATGTTA+AGG | - | chr3_2:91048829-91048848 | Msa0437070:intron | 30.0% | |
| AATTAAGCAACTAGTAAAGG+AGG | + | chr3_2:91049174-91049193 | None:intergenic | 30.0% | |
| CCAAATTAAGCAACTAGTAA+AGG | + | chr3_2:91049177-91049196 | None:intergenic | 30.0% | |
| CCTTTACTAGTTGCTTAATT+TGG | - | chr3_2:91049174-91049193 | Msa0437070:intron | 30.0% | |
| TTTATGTTTGTGTGTGTGAA+TGG | - | chr3_2:91049249-91049268 | Msa0437070:intron | 30.0% | |
| GGTTTAATGCATGAAGTATA+CGG | - | chr3_2:91049350-91049369 | Msa0437070:intron | 30.0% | |
| GTTTAATGCATGAAGTATAC+GGG | - | chr3_2:91049351-91049370 | Msa0437070:intron | 30.0% | |
| CATTTGATCATCAGAATATG+GGG | + | chr3_2:91049424-91049443 | None:intergenic | 30.0% | |
| GCATTTGATCATCAGAATAT+GGG | + | chr3_2:91049425-91049444 | None:intergenic | 30.0% | |
| TGCATTTGATCATCAGAATA+TGG | + | chr3_2:91049426-91049445 | None:intergenic | 30.0% | |
| ! | TGGGTTGACATATACTAATT+TGG | + | chr3_2:91049468-91049487 | None:intergenic | 30.0% |
| ! | GGGTATTTCATATAGTGTTT+TGG | + | chr3_2:91049830-91049849 | None:intergenic | 30.0% |
| GTTAAACTTTCAACGTCTAA+CGG | + | chr3_2:91049994-91050013 | None:intergenic | 30.0% | |
| CCTCATCTATTCTATATTGT+AGG | + | chr3_2:91050181-91050200 | None:intergenic | 30.0% | |
| CCTACAATATAGAATAGATG+AGG | - | chr3_2:91050178-91050197 | Msa0437070:intron | 30.0% | |
| TGAATAACATTTGGATATGG+AGG | + | chr3_2:91050338-91050357 | None:intergenic | 30.0% | |
| TGGTGAATAACATTTGGATA+TGG | + | chr3_2:91050341-91050360 | None:intergenic | 30.0% | |
| TATATCTCTTTGTCTCTTCA+TGG | + | chr3_2:91050501-91050520 | None:intergenic | 30.0% | |
| AAGAGACAAAGAGATATAGA+AGG | - | chr3_2:91050503-91050522 | Msa0437070:intron | 30.0% | |
| ! | AGGATTAGAAAGCATAGATT+TGG | - | chr3_2:91050523-91050542 | Msa0437070:intron | 30.0% |
| TTGTTATGTTGTTGATGTTG+GGG | + | chr3_2:91050575-91050594 | None:intergenic | 30.0% | |
| !!! | CTTCTAGCTTTGATCTTTTA+TGG | + | chr3_2:91050697-91050716 | None:intergenic | 30.0% |
| CATAAAAGATCAAAGCTAGA+AGG | - | chr3_2:91050695-91050714 | Msa0437070:intron | 30.0% | |
| TAAAAGATCAAAGCTAGAAG+GGG | - | chr3_2:91050697-91050716 | Msa0437070:intron | 30.0% | |
| AATTCTACATCTTTGAGCTT+AGG | - | chr3_2:91050734-91050753 | Msa0437070:intron | 30.0% | |
| ! | ATGGAACATTCATGCATTTT+AGG | + | chr3_2:91050767-91050786 | None:intergenic | 30.0% |
| ! | TGAAAATTTTTGCCCACAAA+TGG | + | chr3_2:91050786-91050805 | None:intergenic | 30.0% |
| ! | TTGTGGGCAAAAATTTTCAT+TGG | - | chr3_2:91050787-91050806 | Msa0437070:intron | 30.0% |
| ! | TGTGGGCAAAAATTTTCATT+GGG | - | chr3_2:91050788-91050807 | Msa0437070:intron | 30.0% |
| TAAAGCTATTATCAACGAAG+AGG | - | chr3_2:91050841-91050860 | Msa0437070:CDS | 30.0% | |
| TAAAGAGATTGAATAGTGCA+AGG | - | chr3_2:91050903-91050922 | Msa0437070:CDS | 30.0% | |
| AAAGAGATTGAATAGTGCAA+GGG | - | chr3_2:91050904-91050923 | Msa0437070:CDS | 30.0% | |
| AACTTCAAATCATTCTCCAA+TGG | + | chr3_2:91050956-91050975 | None:intergenic | 30.0% | |
| ! | CAGCTAGTTTCATTCTCTTA+TGG | + | chr3_2:91046504-91046523 | None:intergenic | 35.0% |
| AAGAGAATGAAACTAGCTGA+AGG | - | chr3_2:91046505-91046524 | Msa0437070:CDS | 35.0% | |
| AAGCAAAATCTCTCAGTTTG+TGG | - | chr3_2:91046545-91046564 | Msa0437070:CDS | 35.0% | |
| ATGCATGAGTGTTCTATTTG+TGG | - | chr3_2:91046580-91046599 | Msa0437070:CDS | 35.0% | |
| TGAGTGTTCTATTTGTGGTA+TGG | - | chr3_2:91046585-91046604 | Msa0437070:CDS | 35.0% | |
| GAGTGTTCTATTTGTGGTAT+GGG | - | chr3_2:91046586-91046605 | Msa0437070:CDS | 35.0% | |
| ! | CAGCTCTATGTTTTCTCATA+TGG | + | chr3_2:91046639-91046658 | None:intergenic | 35.0% |
| CATAGAGCTGTCATAAATGA+AGG | - | chr3_2:91046649-91046668 | Msa0437070:CDS | 35.0% | |
| TAGAGCTGTCATAAATGAAG+GGG | - | chr3_2:91046651-91046670 | Msa0437070:CDS | 35.0% | |
| ATCAAGTCATCATTCTCTAG+AGG | + | chr3_2:91046766-91046785 | None:intergenic | 35.0% | |
| GAGAATGATGACTTGATGTT+TGG | - | chr3_2:91046769-91046788 | Msa0437070:CDS | 35.0% | |
| AAAGAAAGTGGAATTGGTGT+TGG | + | chr3_2:91046808-91046827 | None:intergenic | 35.0% | |
| ! | AGAGATGGTTAGTTCATTTC+AGG | + | chr3_2:91047382-91047401 | None:intergenic | 35.0% |
| TGGTTAATTTCGTTGAGAGA+TGG | + | chr3_2:91047397-91047416 | None:intergenic | 35.0% | |
| ! | TTAGTGCTTGTTTGGTTTCA+CGG | + | chr3_2:91047984-91048003 | None:intergenic | 35.0% |
| GAGATTTCTTAGTGCTTGTT+TGG | + | chr3_2:91047992-91048011 | None:intergenic | 35.0% | |
| GCACTAAGAAATCTCTTAAC+GGG | - | chr3_2:91047997-91048016 | Msa0437070:intron | 35.0% | |
| !!! | TTTTAAAGTGTGGAGAAGTG+GGG | + | chr3_2:91048582-91048601 | None:intergenic | 35.0% |
| !!! | CTTTTAAAGTGTGGAGAAGT+GGG | + | chr3_2:91048583-91048602 | None:intergenic | 35.0% |
| !!! | ACTTTTAAAGTGTGGAGAAG+TGG | + | chr3_2:91048584-91048603 | None:intergenic | 35.0% |
| !!! | GATCACACACTTTTAAAGTG+TGG | + | chr3_2:91048592-91048611 | None:intergenic | 35.0% |
| TTCCGTTAGGATGATAAAAG+TGG | + | chr3_2:91048715-91048734 | None:intergenic | 35.0% | |
| ! | TCTGAAGAATTGATTCCGTT+AGG | + | chr3_2:91048728-91048747 | None:intergenic | 35.0% |
| ! | AGTGGTTCTACTTCTATCAT+CGG | - | chr3_2:91048931-91048950 | Msa0437070:intron | 35.0% |
| TGTGCTTAATTGAACGTGTT+AGG | - | chr3_2:91049117-91049136 | Msa0437070:intron | 35.0% | |
| !!! | ATTTGGCTTTTGACTCATGA+TGG | - | chr3_2:91049191-91049210 | Msa0437070:intron | 35.0% |
| ATGACTTGAGCAACATTAGT+AGG | - | chr3_2:91049375-91049394 | Msa0437070:intron | 35.0% | |
| ACTACAATACATCAGCAAAG+AGG | - | chr3_2:91049881-91049900 | Msa0437070:intron | 35.0% | |
| !! | CATTGACTTTGTTCCAGTTA+TGG | - | chr3_2:91050298-91050317 | Msa0437070:intron | 35.0% |
| GAGAAGGAGTTGTGATTAAT+TGG | + | chr3_2:91050361-91050380 | None:intergenic | 35.0% | |
| GTGTTACAATGAATTGGAGA+AGG | + | chr3_2:91050377-91050396 | None:intergenic | 35.0% | |
| ATGGGTGTGTTACAATGAAT+TGG | + | chr3_2:91050383-91050402 | None:intergenic | 35.0% | |
| !!! | GGCGCAAAACTTTTTTGATT+TGG | + | chr3_2:91050602-91050621 | None:intergenic | 35.0% |
| ATGCATGAATGTTCCATTTG+TGG | - | chr3_2:91050770-91050789 | Msa0437070:intron | 35.0% | |
| TGCATGAATGTTCCATTTGT+GGG | - | chr3_2:91050771-91050790 | Msa0437070:intron | 35.0% | |
| ! | ATTTTCATTGGGACAAGCAT+TGG | - | chr3_2:91050799-91050818 | Msa0437070:intron | 35.0% |
| ! | TTTTCATTGGGACAAGCATT+GGG | - | chr3_2:91050800-91050819 | Msa0437070:intron | 35.0% |
| ! | TTCATAACAACTTGCTCCAT+TGG | + | chr3_2:91050872-91050891 | None:intergenic | 35.0% |
| !! | GAAGTTGTTGTTTGGAAAGA+TGG | - | chr3_2:91050970-91050989 | Msa0437070:CDS | 35.0% |
| AAGAGACAAAGGAGCAATGA+AGG | - | chr3_2:91046337-91046356 | Msa0437070:CDS | 40.0% | |
| !! | TTCTCATCTTTTCAAGCCCT+TGG | - | chr3_2:91046463-91046482 | Msa0437070:CDS | 40.0% |
| !! | TTCTCTTATGGCTAGCTCTA+TGG | + | chr3_2:91046492-91046511 | None:intergenic | 40.0% |
| TTGTGGTATGGGATTCTCTT+TGG | - | chr3_2:91046597-91046616 | Msa0437070:CDS | 40.0% | |
| TGTGGTATGGGATTCTCTTT+GGG | - | chr3_2:91046598-91046617 | Msa0437070:CDS | 40.0% | |
| TTCTCTTTGGGTCAAGCATT+AGG | - | chr3_2:91046610-91046629 | Msa0437070:CDS | 40.0% | |
| TAGTAAGAGGATTATGGGGT+TGG | - | chr3_2:91046726-91046745 | Msa0437070:CDS | 40.0% | |
| TCTTACACAGATCTTGTTGC+AGG | + | chr3_2:91047145-91047164 | None:intergenic | 40.0% | |
| TACCAACTGAGCTACACTTA+CGG | + | chr3_2:91048512-91048531 | None:intergenic | 40.0% | |
| ! | GTATGCATTTTCACACGTAG+TGG | + | chr3_2:91049324-91049343 | None:intergenic | 40.0% |
| TGTGAAAATGCATACCTAGC+TGG | - | chr3_2:91049329-91049348 | Msa0437070:intron | 40.0% | |
| CTTCATGCATTAAACCAGCT+AGG | + | chr3_2:91049346-91049365 | None:intergenic | 40.0% | |
| !! | TATAGTGTTTTGGACACGTG+AGG | + | chr3_2:91049820-91049839 | None:intergenic | 40.0% |
| TCATTCCAGTGAGTGACATT+AGG | - | chr3_2:91049913-91049932 | Msa0437070:intron | 40.0% | |
| ! | ATGTTTCTGACTTCGCTTTG+AGG | + | chr3_2:91049949-91049968 | None:intergenic | 40.0% |
| AAACTTTCAACGTCTAACGG+CGG | + | chr3_2:91049991-91050010 | None:intergenic | 40.0% | |
| ! | TCAAAAAAGTTTTGCGCCAG+TGG | - | chr3_2:91050604-91050623 | Msa0437070:intron | 40.0% |
| ! | GTTTTGCACTCATATTCCAC+TGG | + | chr3_2:91050623-91050642 | None:intergenic | 40.0% |
| TTCTCATCCTTTCAAGCACT+AGG | - | chr3_2:91050656-91050675 | Msa0437070:intron | 40.0% | |
| !!! | ATCTTTTATGGCTAGCTCTG+TGG | + | chr3_2:91050685-91050704 | None:intergenic | 40.0% |
| !! | TCATCTTTTCAAGCCCTTGG+TGG | - | chr3_2:91046466-91046485 | Msa0437070:CDS | 45.0% |
| TCTTTGGGTCAAGCATTAGG+AGG | - | chr3_2:91046613-91046632 | Msa0437070:CDS | 45.0% | |
| !! | GAAAGTGGAATTGGTGTTGG+TGG | + | chr3_2:91046805-91046824 | None:intergenic | 45.0% |
| ACCAACTGAGCTACACTTAC+GGG | + | chr3_2:91048511-91048530 | None:intergenic | 45.0% | |
| TACCAGGGACAATGTTTGCA+GGG | - | chr3_2:91048534-91048553 | Msa0437070:intron | 45.0% | |
| TGCATTGCGAGCTATCAAGT+TGG | + | chr3_2:91049698-91049717 | None:intergenic | 45.0% | |
| ACAAAACATGACATCCCACG+CGG | - | chr3_2:91049761-91049780 | Msa0437070:intron | 45.0% | |
| TGAATCTAGATGAACCGCGT+GGG | + | chr3_2:91049778-91049797 | None:intergenic | 45.0% | |
| ATGAATCTAGATGAACCGCG+TGG | + | chr3_2:91049779-91049798 | None:intergenic | 45.0% | |
| CTAGTCCTAATGTCACTCAC+TGG | + | chr3_2:91049921-91049940 | None:intergenic | 45.0% | |
| TCATCCTTTCAAGCACTAGG+TGG | - | chr3_2:91050659-91050678 | Msa0437070:intron | 45.0% | |
| CAACGAAGAGGTTTCTCCAA+TGG | - | chr3_2:91050853-91050872 | Msa0437070:CDS | 45.0% | |
| TAGTGCAAGGGTAATGTGCT+TGG | - | chr3_2:91050916-91050935 | Msa0437070:CDS | 45.0% | |
| GGACTTGAACTTGACACCAT+TGG | - | chr3_2:91050937-91050956 | Msa0437070:CDS | 45.0% | |
| !! | AATAATATAAATCATATTTA+AGG | - | chr3_2:91048109-91048128 | Msa0437070:intron | 5.0% |
| !!! | ATTTATTCATTTAAAATAAA+AGG | + | chr3_2:91048763-91048782 | None:intergenic | 5.0% |
| !!! | TTTATTCATTTTAAAATAAA+AGG | + | chr3_2:91048987-91049006 | None:intergenic | 5.0% |
| GCTCATGTACAATGCACTCC+AGG | - | chr3_2:91048252-91048271 | Msa0437070:intron | 50.0% | |
| CATGTACAATGCACTCCAGG+TGG | - | chr3_2:91048255-91048274 | Msa0437070:intron | 50.0% | |
| TCCCGTAAGTGTAGCTCAGT+TGG | - | chr3_2:91048507-91048526 | Msa0437070:intron | 50.0% | |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | - | chr3_2:91048518-91048537 | Msa0437070:intron | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | - | chr3_2:91048519-91048538 | Msa0437070:intron | 50.0% |
| CTACCAGGGACAATGTTTGC+AGG | - | chr3_2:91048533-91048552 | Msa0437070:intron | 50.0% | |
| ACCAGGGACAATGTTTGCAG+GGG | - | chr3_2:91048535-91048554 | Msa0437070:intron | 50.0% | |
| !! | AGCTTCAAGATGGACTGCGT+GGG | + | chr3_2:91049487-91049506 | None:intergenic | 50.0% |
| !! | AAGCTTCAAGATGGACTGCG+TGG | + | chr3_2:91049488-91049507 | None:intergenic | 50.0% |
| !! | TCATTGGGACAAGCATTGGG+TGG | - | chr3_2:91050803-91050822 | Msa0437070:intron | 50.0% |
| CATTGGGTGGACACATGAGA+AGG | - | chr3_2:91050816-91050835 | Msa0437070:intron | 50.0% | |
| !! | GCTAGCTCTATGGCCACCAA+GGG | + | chr3_2:91046482-91046501 | None:intergenic | 55.0% |
| TGTGGAGAAGTGGGGAATCC+GGG | + | chr3_2:91048574-91048593 | None:intergenic | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+CGG | + | chr3_2:91048575-91048594 | None:intergenic | 55.0% | |
| GATAGCTCGCAATGCACGAC+CGG | - | chr3_2:91049702-91049721 | Msa0437070:intron | 55.0% | |
| ! | CAATGCACGACCGGTTCAGT+TGG | - | chr3_2:91049711-91049730 | Msa0437070:intron | 55.0% |
| GGGTGAGCTACCAACTGAAC+CGG | + | chr3_2:91049724-91049743 | None:intergenic | 55.0% | |
| GTGGCCACCTAGTGCTTGAA+AGG | + | chr3_2:91050666-91050685 | None:intergenic | 55.0% | |
| !! | GGCTAGCTCTATGGCCACCA+AGG | + | chr3_2:91046483-91046502 | None:intergenic | 60.0% |
| CTCGATCGTGCTCGTCCAAC+TGG | - | chr3_2:91047096-91047115 | Msa0437070:intron | 60.0% | |
| GCCCCTGCAAACATTGTCCC+TGG | + | chr3_2:91048539-91048558 | None:intergenic | 60.0% | |
| GGGACAATGTTTGCAGGGGC+CGG | - | chr3_2:91048539-91048558 | Msa0437070:intron | 60.0% | |
| GGACAATGTTTGCAGGGGCC+GGG | - | chr3_2:91048540-91048559 | Msa0437070:intron | 60.0% | |
| GACAATGTTTGCAGGGGCCG+GGG | - | chr3_2:91048541-91048560 | Msa0437070:intron | 60.0% | |
| GTGGAGAAGTGGGGAATCCG+GGG | + | chr3_2:91048573-91048592 | None:intergenic | 60.0% | |
| GGAGGATACCCCACTAGCAG+CGG | + | chr3_2:91049156-91049175 | None:intergenic | 60.0% | |
| GGAATCCGGGGTTCGAACCC+CGG | + | chr3_2:91048561-91048580 | None:intergenic | 65.0% | |
| TCCCTGCAGACCGCTGCTAG+TGG | - | chr3_2:91049143-91049162 | Msa0437070:intron | 65.0% | |
| CCCACTAGCAGCGGTCTGCA+GGG | + | chr3_2:91049147-91049166 | None:intergenic | 65.0% | |
| CCCTGCAGACCGCTGCTAGT+GGG | - | chr3_2:91049144-91049163 | Msa0437070:intron | 65.0% | |
| CCTGCAGACCGCTGCTAGTG+GGG | - | chr3_2:91049145-91049164 | Msa0437070:intron | 65.0% | |
| CCCCACTAGCAGCGGTCTGC+AGG | + | chr3_2:91049148-91049167 | None:intergenic | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr3_2:91048553-91048572 | Msa0437070:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 91046328 | 91051018 | 91046328 | ID=Msa0437070;Name=Msa0437070 |
| chr3_2 | mRNA | 91046328 | 91051018 | 91046328 | ID=Msa0437070-mRNA-1;Parent=Msa0437070;Name=Msa0437070-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0|0.5|2|0|239 |
| chr3_2 | exon | 91050820 | 91051018 | 91050820 | ID=Msa0437070-mRNA-1:exon:27214;Parent=Msa0437070-mRNA-1 |
| chr3_2 | exon | 91046328 | 91046848 | 91046328 | ID=Msa0437070-mRNA-1:exon:27213;Parent=Msa0437070-mRNA-1 |
| chr3_2 | CDS | 91050820 | 91051018 | 91050820 | ID=Msa0437070-mRNA-1:cds;Parent=Msa0437070-mRNA-1 |
| chr3_2 | CDS | 91046328 | 91046848 | 91046328 | ID=Msa0437070-mRNA-1:cds;Parent=Msa0437070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
