AlfalfaGEDB | Msa0560660

M. sativa cultivar zhongmu-4 / Msa0560660

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560660	QDC33491.1	100.000	192	0	0	1	192	1	192	1.73e-141	402

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560660	sp\|Q8GWK6\|NC104_ARATH	66.492	191	51	3	10	191	1	187	5.33e-83	246

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560660	A0A4Y5ULN3	100.000	192	0	0	1	192	1	192	8.26e-142	402

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TFs/TRs:

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Gene ID	Type	Classification
Msa0560660	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026450	Msa0560660	0.809822	1.564679e-50	-8.615850e-47
Msa0145260	Msa0560660	0.804013	2.647788e-49	-8.615850e-47
Msa0560660	Msa0614610	0.918474	1.490249e-86	-8.615850e-47
Msa0560660	Msa0639270	0.969941	7.217790e-131	-8.615850e-47
Msa0560660	Msa0697880	0.911791	4.076402e-83	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560660	MtrunA17_Chr4g0050701	98.438	192	2	1	1	192	1	191	4.58e-142	393
Msa0560660	MtrunA17_Chr8g0384351	46.040	202	74	8	6	192	4	185	3.56e-50	160
Msa0560660	MtrunA17_Chr3g0130321	40.580	207	100	7	7	191	2	207	9.42e-47	152
Msa0560660	MtrunA17_Chr2g0318101	42.945	163	80	2	11	160	14	176	3.90e-43	147
Msa0560660	MtrunA17_Chr4g0042561	42.675	157	78	3	12	160	9	161	7.11e-42	142
Msa0560660	MtrunA17_Chr8g0359921	42.683	164	80	3	10	165	12	169	2.35e-41	142
Msa0560660	MtrunA17_Chr4g0047841	40.000	175	80	2	11	160	14	188	3.16e-41	142
Msa0560660	MtrunA17_Chr3g0124761	42.857	161	78	3	8	160	3	157	4.48e-40	137
Msa0560660	MtrunA17_Chr2g0318081	42.073	164	79	4	10	165	14	169	5.74e-40	139
Msa0560660	MtrunA17_Chr7g0263931	39.881	168	89	3	2	160	1	165	7.28e-40	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560660	AT5G64530.1	66.492	191	51	3	10	191	1	187	5.42e-84	246
Msa0560660	AT5G64530.2	70.161	124	33	1	10	133	1	120	2.53e-63	193
Msa0560660	AT4G27410.2	43.293	164	77	3	10	165	12	167	2.07e-41	141
Msa0560660	AT1G69490.1	39.474	190	96	5	11	186	8	192	5.14e-41	140
Msa0560660	AT1G52890.1	43.902	164	76	4	10	165	12	167	5.89e-41	141
Msa0560660	AT3G15500.1	44.512	164	75	4	10	165	12	167	1.00e-40	140
Msa0560660	AT1G61110.1	42.424	165	80	4	11	161	15	178	1.09e-40	140
Msa0560660	AT1G01720.1	38.860	193	100	5	10	191	5	190	2.06e-39	136
Msa0560660	AT4G27410.3	39.779	181	76	4	10	165	12	184	3.39e-38	134
Msa0560660	AT3G04070.2	40.741	162	84	3	11	160	9	170	3.80e-38	134

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Find 68 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTATGTGTTCCATAT+TGG	0.324951	4_1:+59924037	Msa0560660:CDS
AACAATGTTAATCTTCCACC+CGG	0.553928	4_1:+59923623	Msa0560660:CDS
AAGAATATACTAACTGATTT+TGG	0.171613	4_1:-59924163	None:intergenic
AAGATACCTTGAAGTTGCCA+TGG	0.559700	4_1:-59923761	None:intergenic
AAGATGATCAAGATGGAGAT+GGG	0.567207	4_1:+59924427	Msa0560660:CDS
AAGCCTTTCTATGAAGAAAA+TGG	0.313106	4_1:-59923682	None:intergenic
AATATGATATGATGAAGGTG+TGG	0.698949	4_1:-59923504	None:intergenic
AATGAAAGAGAAATGGAGCT+AGG	0.528322	4_1:-59923534	None:intergenic
AATGGATAGAGGTCAAGATC+AGG	0.481249	4_1:-59923734	None:intergenic
AATGGTACTATTATAGTAGA+AGG	0.419835	4_1:+59923918	Msa0560660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATCAATGAATTATATTGGG+AGG	-	chr4_1:59923453-59923472	None:intergenic	30.0%
AATATGATATGATGAAGGTG+TGG	-	chr4_1:59923507-59923526	None:intergenic	30.0%
AAGCCTTTCTATGAAGAAAA+TGG	-	chr4_1:59923685-59923704	None:intergenic	30.0%
CAAAATAGAATGACTAACAG+TGG	+	chr4_1:59923944-59923963	Msa0560660:CDS	30.0%
TGCATTTGCATCATCTAATT+TGG	-	chr4_1:59924516-59924535	None:intergenic	30.0%
ACGTCATATTGCATATTGTT+TGG	-	chr4_1:59924802-59924821	None:intergenic	30.0%
GATCAATGAATTATATTGGG+AGG	-	chr4_1:59923453-59923472	None:intergenic	30.0%
AATATGATATGATGAAGGTG+TGG	-	chr4_1:59923507-59923526	None:intergenic	30.0%
AAGCCTTTCTATGAAGAAAA+TGG	-	chr4_1:59923685-59923704	None:intergenic	30.0%
CAAAATAGAATGACTAACAG+TGG	+	chr4_1:59923944-59923963	Msa0560660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	59923436	59924833	59923436	ID=Msa0560660;Name=Msa0560660
chr4_1	mRNA	59923436	59924833	59923436	ID=Msa0560660-mRNA-1;Parent=Msa0560660;Name=Msa0560660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166\|1\|1\|1\|1\|1\|3\|312\|192
chr4_1	exon	59923436	59923776	59923436	ID=Msa0560660-mRNA-1:exon:18624;Parent=Msa0560660-mRNA-1
chr4_1	exon	59923894	59924171	59923894	ID=Msa0560660-mRNA-1:exon:18625;Parent=Msa0560660-mRNA-1
chr4_1	exon	59924396	59924833	59924396	ID=Msa0560660-mRNA-1:exon:18626;Parent=Msa0560660-mRNA-1
chr4_1	five_prime_UTR	59923436	59923601	59923436	ID=Msa0560660-mRNA-1:five_prime_utr;Parent=Msa0560660-mRNA-1
chr4_1	CDS	59923602	59923776	59923602	ID=Msa0560660-mRNA-1:cds;Parent=Msa0560660-mRNA-1
chr4_1	CDS	59923894	59924171	59923894	ID=Msa0560660-mRNA-1:cds;Parent=Msa0560660-mRNA-1
chr4_1	CDS	59924396	59924521	59924396	ID=Msa0560660-mRNA-1:cds;Parent=Msa0560660-mRNA-1
chr4_1	three_prime_UTR	59924522	59924833	59924522	ID=Msa0560660-mRNA-1:three_prime_utr;Parent=Msa0560660-mRNA-1

Gene Sequence

>Msa0560660

ATGGTAGATAATAATACTAATAACAATGTTAATCTTCCACCCGGGTTTAGATTTTATCCGACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCTTCCCTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGTAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAACAGTGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGCTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATATTGGAGAAGCACCTAATGGTAACCAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCTTCCTCTAGCAGATCATCATCCAAAAGAAAATCACAACCAAAATCATGGGTGATATGTCGAGTTTATGAGCGTGATGAAGATGATCAAGATGGAGATGGGACAGAGCTATCTTGTTTGGATGAAGTTTTCTTGTCATTAGATGATCTTGATGAAGTAAGCTTGCCAAATTAG

Protein sequence

>Msa0560660

MVDNNTNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNSGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRLSDSASSSSRSSSKRKSQPKSWVICRVYERDEDDQDGDGTELSCLDEVFLSLDDLDEVSLPN*