AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560660 MtrunA17_Chr4g0050701 98.438 192 2 1 1 192 1 191 4.58e-142 393
Msa0560660 MtrunA17_Chr8g0384351 46.040 202 74 8 6 192 4 185 3.56e-50 160
Msa0560660 MtrunA17_Chr3g0130321 40.580 207 100 7 7 191 2 207 9.42e-47 152
Msa0560660 MtrunA17_Chr2g0318101 42.945 163 80 2 11 160 14 176 3.90e-43 147
Msa0560660 MtrunA17_Chr4g0042561 42.675 157 78 3 12 160 9 161 7.11e-42 142
Msa0560660 MtrunA17_Chr8g0359921 42.683 164 80 3 10 165 12 169 2.35e-41 142
Msa0560660 MtrunA17_Chr4g0047841 40.000 175 80 2 11 160 14 188 3.16e-41 142
Msa0560660 MtrunA17_Chr3g0124761 42.857 161 78 3 8 160 3 157 4.48e-40 137
Msa0560660 MtrunA17_Chr2g0318081 42.073 164 79 4 10 165 14 169 5.74e-40 139
Msa0560660 MtrunA17_Chr7g0263931 39.881 168 89 3 2 160 1 165 7.28e-40 138
Msa0560660 MtrunA17_Chr5g0417791 40.252 159 83 3 10 160 1 155 1.08e-39 135
Msa0560660 MtrunA17_Chr7g0214071 39.412 170 85 4 7 168 10 169 5.88e-39 134
Msa0560660 MtrunA17_Chr8g0384721 41.509 159 80 3 10 160 5 158 7.77e-39 134
Msa0560660 MtrunA17_Chr2g0326361 38.889 162 89 2 4 157 6 165 1.08e-38 135
Msa0560660 MtrunA17_Chr3g0130731 40.881 159 80 3 10 160 5 157 2.52e-36 128
Msa0560660 MtrunA17_Chr7g0252971 37.500 168 88 3 10 162 6 171 3.14e-36 129
Msa0560660 MtrunA17_Chr1g0200561 39.375 160 76 4 12 160 19 168 3.52e-35 126
Msa0560660 MtrunA17_Chr2g0309891 41.615 161 77 4 10 160 4 157 3.68e-35 126
Msa0560660 MtrunA17_Chr3g0139331 37.427 171 86 3 12 174 11 168 1.15e-34 125
Msa0560660 MtrunA17_Chr4g0054791 40.120 167 83 4 10 165 4 164 2.26e-34 123
Msa0560660 MtrunA17_Chr5g0398971 36.970 165 85 4 7 160 2 158 3.60e-34 124
Msa0560660 MtrunA17_Chr2g0309331 37.654 162 81 5 10 160 8 160 3.84e-34 123
Msa0560660 MtrunA17_Chr5g0400461 36.158 177 89 4 8 169 2 169 4.09e-34 123
Msa0560660 MtrunA17_Chr4g0056541 39.394 165 79 4 7 160 2 156 6.91e-34 123
Msa0560660 MtrunA17_Chr4g0018391 37.888 161 79 4 11 160 6 156 7.34e-34 122
Msa0560660 MtrunA17_Chr8g0361731 38.608 158 86 2 14 160 16 173 1.04e-33 123
Msa0560660 MtrunA17_Chr1g0147421 39.375 160 76 4 12 160 27 176 1.23e-33 122
Msa0560660 MtrunA17_Chr5g0405211 39.375 160 76 4 12 160 8 157 1.54e-33 122
Msa0560660 MtrunA17_Chr8g0346001 36.095 169 92 4 6 160 9 175 2.92e-33 122
Msa0560660 MtrunA17_Chr5g0433781 40.373 161 78 4 10 160 4 156 2.93e-33 124
Msa0560660 MtrunA17_Chr4g0060931 34.375 192 102 4 1 174 6 191 3.03e-33 121
Msa0560660 MtrunA17_Chr3g0109821 38.509 161 82 4 10 160 4 157 6.03e-33 124
Msa0560660 MtrunA17_Chr8g0372121 37.500 160 79 4 12 160 6 155 8.95e-33 119
Msa0560660 MtrunA17_Chr1g0183741 35.542 166 89 2 10 167 8 163 1.11e-32 118
Msa0560660 MtrunA17_Chr6g0481091 35.955 178 91 5 10 172 4 173 1.32e-32 117
Msa0560660 MtrunA17_Chr6g0484441 34.197 193 106 4 11 192 4 186 1.63e-32 119
Msa0560660 MtrunA17_Chr5g0417001 37.580 157 88 2 14 160 16 172 1.82e-32 120
Msa0560660 MtrunA17_Chr4g0017921 36.145 166 84 4 6 160 2 156 1.89e-32 119
Msa0560660 MtrunA17_Chr6g0453451 36.413 184 103 4 3 178 11 188 4.28e-32 117
Msa0560660 MtrunA17_Chr7g0261411 38.217 157 79 2 10 158 8 154 4.76e-32 117
Msa0560660 MtrunA17_Chr8g0385991 37.179 156 89 4 12 160 14 167 6.21e-32 115
Msa0560660 MtrunA17_Chr6g0453131 39.130 161 86 3 11 160 14 173 7.54e-31 115
Msa0560660 MtrunA17_Chr2g0312321 35.196 179 95 5 10 178 9 176 8.74e-31 114
Msa0560660 MtrunA17_Chr3g0091921 37.580 157 84 3 12 160 16 166 1.14e-30 113
Msa0560660 MtrunA17_Chr2g0316971 36.250 160 90 2 9 160 20 175 1.63e-30 114
Msa0560660 MtrunA17_Chr3g0131911 36.420 162 93 3 12 164 14 174 6.75e-30 110
Msa0560660 MtrunA17_Chr1g0197351 37.654 162 89 3 10 161 40 199 3.26e-29 112
Msa0560660 MtrunA17_Chr6g0461661 31.156 199 125 2 1 191 7 201 4.67e-29 110
Msa0560660 MtrunA17_Chr3g0092671 37.736 159 77 7 14 160 7 155 1.67e-28 110
Msa0560660 MtrunA17_Chr7g0253011 31.792 173 104 3 1 163 6 174 3.91e-28 108
Msa0560660 MtrunA17_Chr4g0076731 38.710 155 78 3 14 160 56 201 5.22e-28 108
Msa0560660 MtrunA17_Chr2g0311651 31.707 164 96 4 14 161 24 187 6.18e-28 106
Msa0560660 MtrunA17_Chr3g0130101 36.709 158 82 4 14 161 9 158 7.13e-28 107
Msa0560660 MtrunA17_Chr2g0311661 33.533 167 89 5 14 161 23 186 8.06e-28 105
Msa0560660 MtrunA17_Chr7g0266701 35.673 171 84 8 11 162 3 166 1.39e-27 104
Msa0560660 MtrunA17_Chr5g0442771 31.447 159 97 3 14 160 20 178 1.71e-27 105
Msa0560660 MtrunA17_Chr8g0384201 36.250 160 84 5 12 161 6 157 8.84e-27 105
Msa0560660 MtrunA17_Chr1g0197361 34.568 162 78 6 14 160 10 158 1.73e-26 105
Msa0560660 MtrunA17_Chr8g0364791 36.250 160 84 5 12 161 6 157 4.78e-26 103
Msa0560660 MtrunA17_Chr3g0144271 38.000 150 84 2 1 141 12 161 7.57e-26 102
Msa0560660 MtrunA17_Chr7g0217721 31.148 183 107 3 7 172 14 194 2.20e-25 100
Msa0560660 MtrunA17_Chr4g0038751 35.256 156 81 3 14 160 17 161 2.60e-25 99.4
Msa0560660 MtrunA17_Chr2g0321631 37.888 161 80 6 13 158 5 160 2.60e-25 98.6
Msa0560660 MtrunA17_Chr4g0026141 36.250 160 85 5 12 158 5 160 7.15e-25 97.4
Msa0560660 MtrunA17_Chr7g0217711 36.842 133 74 2 7 131 14 144 1.10e-24 95.1
Msa0560660 MtrunA17_Chr1g0201021 37.226 137 74 4 14 140 21 155 2.13e-23 96.7
Msa0560660 MtrunA17_Chr3g0128111 30.818 159 92 4 15 163 45 195 1.85e-22 90.9
Msa0560660 MtrunA17_Chr8g0345671 30.952 168 87 6 4 157 3 155 8.96e-21 88.6
Msa0560660 MtrunA17_Chr3g0128151 30.061 163 96 4 11 163 21 175 4.09e-20 87.4
Msa0560660 MtrunA17_Chr5g0428991 30.864 162 94 4 12 163 25 178 5.40e-20 87.0
Msa0560660 MtrunA17_Chr8g0345731 33.588 131 74 4 12 129 24 154 1.76e-18 78.6
Msa0560660 MtrunA17_Chr3g0113031 38.679 106 60 3 66 171 3 103 1.01e-17 78.6
Msa0560660 MtrunA17_Chr3g0113001 39.806 103 47 4 67 160 20 116 1.49e-17 78.6
Msa0560660 MtrunA17_Chr2g0321741 32.558 129 63 4 43 162 23 136 1.49e-17 79.3
Msa0560660 MtrunA17_Chr8g0345691 27.950 161 87 7 11 157 11 156 3.58e-17 78.6
Msa0560660 MtrunA17_Chr8g0345711 31.818 132 74 5 12 130 12 140 7.34e-16 71.6
Msa0560660 MtrunA17_Chr8g0345701 31.333 150 69 6 8 129 3 146 2.82e-15 70.5
Msa0560660 MtrunA17_Chr7g0243371 49.153 59 30 0 78 136 38 96 1.97e-14 66.6
Msa0560660 MtrunA17_Chr7g0251661 31.915 141 83 6 6 135 4 142 1.60e-13 65.1
Msa0560660 MtrunA17_Chr8g0345741 30.303 99 58 4 42 130 22 119 7.40e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560660 AT5G64530.1 66.492 191 51 3 10 191 1 187 5.42e-84 246
Msa0560660 AT5G64530.2 70.161 124 33 1 10 133 1 120 2.53e-63 193
Msa0560660 AT4G27410.2 43.293 164 77 3 10 165 12 167 2.07e-41 141
Msa0560660 AT1G69490.1 39.474 190 96 5 11 186 8 192 5.14e-41 140
Msa0560660 AT1G52890.1 43.902 164 76 4 10 165 12 167 5.89e-41 141
Msa0560660 AT3G15500.1 44.512 164 75 4 10 165 12 167 1.00e-40 140
Msa0560660 AT1G61110.1 42.424 165 80 4 11 161 15 178 1.09e-40 140
Msa0560660 AT1G01720.1 38.860 193 100 5 10 191 5 190 2.06e-39 136
Msa0560660 AT4G27410.3 39.779 181 76 4 10 165 12 184 3.39e-38 134
Msa0560660 AT3G04070.2 40.741 162 84 3 11 160 9 170 3.80e-38 134
Msa0560660 AT1G77450.1 39.888 178 86 4 5 167 3 174 4.20e-38 132
Msa0560660 AT2G24430.2 40.881 159 79 2 12 162 16 167 7.85e-37 130
Msa0560660 AT2G24430.1 40.881 159 79 2 12 162 16 167 7.85e-37 130
Msa0560660 AT5G13180.1 42.767 159 75 3 7 158 9 158 8.75e-37 128
Msa0560660 AT5G63790.1 40.881 159 82 3 10 160 48 202 1.63e-36 129
Msa0560660 AT3G15510.1 38.372 172 87 3 16 168 21 192 1.72e-36 130
Msa0560660 AT5G63790.2 40.881 159 82 3 10 160 58 212 2.24e-36 129
Msa0560660 AT3G04070.1 39.326 178 80 5 11 160 9 186 6.57e-36 129
Msa0560660 AT2G33480.1 40.854 164 80 4 10 166 13 166 7.07e-36 126
Msa0560660 AT4G17980.1 39.130 161 84 3 12 162 6 162 1.77e-35 125
Msa0560660 AT2G33480.2 40.244 164 79 4 10 166 13 164 3.08e-35 125
Msa0560660 AT4G17980.2 39.130 161 84 3 12 162 6 162 3.55e-35 125
Msa0560660 AT1G71930.2 38.012 171 85 4 12 171 9 169 4.41e-35 125
Msa0560660 AT1G71930.1 38.012 171 85 4 12 171 9 169 4.41e-35 125
Msa0560660 AT4G36160.1 38.922 167 81 4 5 160 3 159 5.23e-35 127
Msa0560660 AT4G36160.3 38.922 167 81 4 5 160 3 159 5.23e-35 127
Msa0560660 AT4G36160.2 38.922 167 81 4 5 160 7 163 5.26e-35 127
Msa0560660 AT3G18400.1 40.373 161 73 4 11 160 4 152 8.76e-35 125
Msa0560660 AT5G53950.1 40.828 169 86 4 12 171 17 180 8.82e-35 126
Msa0560660 AT5G07680.2 39.623 159 82 3 10 160 1 153 1.20e-34 124
Msa0560660 AT5G07680.1 39.623 159 82 3 10 160 15 167 1.25e-34 125
Msa0560660 AT5G46590.1 40.373 161 80 4 12 162 6 160 1.59e-34 124
Msa0560660 AT5G08790.1 39.506 162 86 3 7 160 2 159 1.94e-34 123
Msa0560660 AT2G18060.3 38.650 163 79 4 9 160 6 158 3.70e-34 124
Msa0560660 AT2G18060.1 38.650 163 79 4 9 160 6 158 3.70e-34 124
Msa0560660 AT5G61430.1 38.994 159 83 3 10 160 14 166 1.26e-33 122
Msa0560660 AT5G62380.2 37.037 162 81 4 10 160 5 156 1.65e-33 122
Msa0560660 AT5G62380.1 37.037 162 81 4 10 160 5 156 1.65e-33 122
Msa0560660 AT1G79580.3 37.654 162 80 5 10 160 15 166 1.67e-33 122
Msa0560660 AT1G79580.5 37.654 162 80 5 10 160 15 166 1.67e-33 122
Msa0560660 AT1G79580.4 37.654 162 80 5 10 160 15 166 1.67e-33 122
Msa0560660 AT1G79580.2 37.654 162 80 5 10 160 15 166 1.67e-33 122
Msa0560660 AT1G79580.1 37.654 162 80 5 10 160 15 166 1.67e-33 122
Msa0560660 AT1G32510.1 39.157 166 81 4 12 162 6 166 1.85e-33 120
Msa0560660 AT5G66300.1 36.842 171 88 4 1 160 1 162 3.52e-33 120
Msa0560660 AT1G12260.2 36.970 165 83 4 7 160 2 156 5.88e-33 120
Msa0560660 AT3G61910.1 35.429 175 93 4 5 161 4 176 8.78e-33 120
Msa0560660 AT5G39610.1 36.364 176 95 4 9 176 17 183 1.40e-32 118
Msa0560660 AT1G12260.1 36.970 165 83 4 7 160 2 156 1.70e-32 120
Msa0560660 AT3G12977.1 34.426 183 105 3 10 184 16 191 1.90e-32 118
Msa0560660 AT3G17730.1 37.654 162 83 4 10 161 4 157 2.36e-32 117
Msa0560660 AT5G46590.2 43.382 136 66 3 12 137 6 140 3.20e-32 117
Msa0560660 AT1G65910.1 36.646 161 84 4 10 160 4 156 3.41e-32 122
Msa0560660 AT1G62700.1 36.970 165 83 4 7 160 2 156 4.55e-32 119
Msa0560660 AT1G62700.2 36.970 165 83 4 7 160 2 156 4.55e-32 119
Msa0560660 AT1G76420.1 37.725 167 89 2 8 166 18 177 5.31e-32 118
Msa0560660 AT1G52880.1 36.709 158 88 3 16 161 21 178 7.32e-32 117
Msa0560660 AT4G10350.1 37.195 164 84 4 6 158 3 158 7.74e-32 117
Msa0560660 AT1G33280.1 36.145 166 84 4 6 160 2 156 8.63e-32 117
Msa0560660 AT2G46770.1 34.483 174 94 4 5 160 9 180 2.23e-31 117
Msa0560660 AT1G54330.1 40.123 162 76 4 10 161 4 154 2.37e-31 115
Msa0560660 AT1G26870.1 37.017 181 97 3 12 181 16 190 2.47e-31 117
Msa0560660 AT1G56010.2 35.938 192 100 6 10 191 17 195 2.59e-31 116
Msa0560660 AT3G03200.1 37.267 161 84 4 10 160 4 157 3.55e-31 118
Msa0560660 AT5G17260.1 36.646 161 85 4 10 160 4 157 8.02e-31 117
Msa0560660 AT3G04060.1 35.897 195 103 6 10 191 18 203 2.15e-30 114
Msa0560660 AT1G32770.1 33.520 179 98 5 1 160 1 177 3.41e-30 114
Msa0560660 AT2G02450.1 38.710 155 78 3 14 160 53 198 5.67e-30 113
Msa0560660 AT3G10490.1 37.037 162 85 4 10 161 25 179 8.99e-30 110
Msa0560660 AT2G02450.2 38.710 155 78 3 14 160 53 198 1.01e-29 113
Msa0560660 AT3G10500.1 33.333 213 101 6 10 189 7 211 2.35e-29 114
Msa0560660 AT5G04410.1 38.554 166 74 6 10 160 7 159 3.59e-29 113
Msa0560660 AT3G15170.1 37.179 156 82 4 12 157 20 169 3.73e-29 110
Msa0560660 AT3G10480.1 36.420 162 86 4 10 161 25 179 4.38e-29 112
Msa0560660 AT5G39820.1 34.043 188 96 4 1 160 4 191 5.51e-29 110
Msa0560660 AT3G10480.2 36.420 162 85 4 10 161 25 178 7.07e-29 111
Msa0560660 AT3G29035.1 37.037 162 88 3 10 163 22 177 7.43e-29 109
Msa0560660 AT5G18270.1 36.875 160 88 3 10 161 19 173 1.28e-28 109
Msa0560660 AT3G10490.2 37.037 162 85 4 10 161 25 179 1.62e-28 110
Msa0560660 AT3G12910.1 34.756 164 89 5 14 160 23 185 2.03e-28 108
Msa0560660 AT5G18270.2 36.250 160 89 3 10 161 19 173 2.83e-28 108
Msa0560660 AT2G43000.1 34.194 155 87 3 14 160 20 167 5.26e-28 106
Msa0560660 AT5G22290.1 37.342 158 76 5 14 162 23 166 2.03e-27 106
Msa0560660 AT4G35580.1 36.686 169 85 5 11 167 8 166 1.98e-26 105
Msa0560660 AT4G35580.3 36.686 169 85 5 11 167 8 166 2.46e-26 105
Msa0560660 AT4G35580.2 36.686 169 85 5 11 167 8 166 2.57e-26 105
Msa0560660 AT4G28530.1 33.898 177 81 4 12 163 10 175 4.56e-26 102
Msa0560660 AT1G33060.1 34.545 165 90 4 12 166 24 180 8.03e-26 103
Msa0560660 AT1G33060.2 34.545 165 90 4 12 166 24 180 8.70e-26 103
Msa0560660 AT2G27300.1 41.732 127 63 3 12 129 14 138 1.17e-25 101
Msa0560660 AT2G17040.1 34.615 156 82 3 14 160 8 152 1.22e-25 100
Msa0560660 AT3G10480.3 30.769 195 85 4 10 161 25 212 3.37e-25 102
Msa0560660 AT3G44290.2 38.400 125 66 4 14 129 16 138 9.28e-25 97.1
Msa0560660 AT3G44290.1 38.400 125 66 4 14 129 16 138 2.39e-24 97.8
Msa0560660 AT1G32870.2 43.511 131 64 3 9 131 7 135 2.69e-24 99.4
Msa0560660 AT1G32870.1 43.511 131 64 3 9 131 7 135 2.76e-24 99.4
Msa0560660 AT1G34190.1 40.000 130 66 4 14 133 18 145 3.05e-24 99.4
Msa0560660 AT1G32870.3 43.511 131 64 3 9 131 43 171 3.06e-24 99.4
Msa0560660 AT3G49530.2 33.333 162 91 5 11 162 12 166 6.56e-24 97.8
Msa0560660 AT3G49530.1 33.333 162 91 5 11 162 12 166 6.67e-24 98.2
Msa0560660 AT1G34180.3 39.231 130 67 4 14 133 18 145 1.69e-23 96.7
Msa0560660 AT1G34180.1 39.231 130 67 4 14 133 18 145 1.95e-23 97.1
Msa0560660 AT5G64060.1 32.121 165 92 6 8 161 2 157 1.13e-22 93.6
Msa0560660 AT5G09330.5 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
Msa0560660 AT5G09330.2 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
Msa0560660 AT5G09330.4 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
Msa0560660 AT5G09330.3 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
Msa0560660 AT5G09330.1 33.333 162 90 5 10 161 4 157 1.31e-22 94.7
Msa0560660 AT1G34180.4 35.915 142 67 4 14 133 18 157 1.04e-21 92.0
Msa0560660 AT5G04395.1 32.450 151 80 5 4 132 20 170 1.05e-21 87.8
Msa0560660 AT1G34180.2 35.915 142 67 4 14 133 18 157 1.23e-21 92.0
Msa0560660 AT5G24590.2 31.288 163 95 4 10 162 11 166 3.49e-21 90.5
Msa0560660 AT5G22380.1 35.404 161 79 6 15 158 8 160 1.70e-20 85.9
Msa0560660 AT3G44350.2 33.918 171 92 7 12 168 5 168 1.76e-20 85.9
Msa0560660 AT5G50820.1 33.735 166 100 4 7 166 12 173 1.88e-20 84.7
Msa0560660 AT5G14000.1 29.255 188 103 7 6 176 9 183 7.44e-20 83.6
Msa0560660 AT3G44350.1 35.915 142 75 5 12 139 5 144 1.34e-19 81.6
Msa0560660 AT1G56010.1 33.094 139 73 4 61 191 2 128 3.53e-18 80.1
Msa0560660 AT5G14000.2 30.986 142 84 5 6 137 9 146 2.23e-16 73.2
Msa0560660 AT1G02230.1 28.492 179 102 7 13 178 4 169 2.68e-16 76.3
Msa0560660 AT3G12977.2 31.250 128 73 3 65 184 18 138 4.14e-16 73.9
Msa0560660 AT5G61430.2 32.836 134 73 4 67 192 8 132 5.28e-16 74.3
Msa0560660 AT4G10350.2 34.951 103 51 3 66 160 19 113 1.11e-15 73.9
Msa0560660 AT2G33480.3 40.000 90 46 2 77 166 28 109 2.15e-15 71.6
Msa0560660 AT4G01550.1 27.950 161 93 5 15 163 7 156 4.01e-15 73.2
Msa0560660 AT4G01520.1 30.061 163 90 5 13 162 5 156 1.79e-14 70.5
Msa0560660 AT4G01540.3 29.448 163 87 7 15 162 7 156 3.45e-14 70.5
Msa0560660 AT4G01540.1 29.448 163 87 7 15 162 7 156 3.55e-14 70.5
Msa0560660 AT3G04420.2 33.333 129 72 5 13 129 4 130 3.85e-14 69.3
Msa0560660 AT4G01540.2 29.448 163 87 7 15 162 7 156 4.53e-14 70.1
Msa0560660 AT3G04420.1 33.333 129 72 5 13 129 4 130 4.74e-14 69.7
Msa0560660 AT4G01540.4 29.448 163 87 7 15 162 7 156 5.02e-14 69.7
Msa0560660 AT1G02250.1 28.834 163 90 7 13 162 4 153 4.19e-13 67.0
Msa0560660 AT3G56520.1 27.072 181 99 7 12 176 8 171 8.24e-13 63.9
Msa0560660 AT2G43000.2 34.524 84 48 2 77 160 13 89 7.55e-12 62.0
Msa0560660 AT3G10490.4 36.471 85 47 2 77 161 2 79 1.23e-11 62.8
Msa0560660 AT3G10490.3 36.471 85 47 2 77 161 2 79 1.23e-11 62.8
Msa0560660 AT4G28530.2 33.945 109 46 3 12 95 10 117 1.29e-11 62.4
Msa0560660 AT1G01010.1 28.994 169 90 7 15 166 6 161 2.23e-11 62.0
Msa0560660 AT2G18060.2 35.443 79 41 2 82 160 2 70 7.64e-11 60.1

Find 68 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTGCATCATCTAATT+TGG 0.155320 4_1:-59924513 None:intergenic
AAGAATATACTAACTGATTT+TGG 0.171613 4_1:-59924163 None:intergenic
ATATCTAGTGCCCCACTTGC+AGG 0.233245 4_1:-59924760 None:intergenic
AATTGATCAATGAATTATAT+TGG 0.250285 4_1:-59923454 None:intergenic
CATCTGGATGACAAGGTAAA+AGG 0.259924 4_1:-59923706 None:intergenic
CATTAGGTGCTTCTCCAATA+TGG 0.269862 4_1:-59924051 None:intergenic
AAGCCTTTCTATGAAGAAAA+TGG 0.313106 4_1:-59923682 None:intergenic
AAATATTATGTGTTCCATAT+TGG 0.324951 4_1:+59924037 Msa0560660:CDS
CAATTGGTTTGGTTACCATT+AGG 0.336748 4_1:-59924067 None:intergenic
GAATGACTAACAGTGGTTAT+TGG 0.338084 4_1:+59923951 Msa0560660:CDS
ATTGATCAATGAATTATATT+GGG 0.364866 4_1:-59923453 None:intergenic
CTATATTCTCTAAATAATAA+TGG 0.369337 4_1:+59923583 Msa0560660:exon
GAAATTAAATGAAAGAGAAA+TGG 0.371266 4_1:-59923541 None:intergenic
TGGGACAGAGCTATCTTGTT+TGG 0.375974 4_1:+59924446 Msa0560660:CDS
TTAGATATTTATCTCCCATT+TGG 0.379877 4_1:-59924602 None:intergenic
ACGTCATATTGCATATTGTT+TGG 0.391184 4_1:-59924799 None:intergenic
ATGGAAGCTAAAGTAGCTAT+TGG 0.400716 4_1:-59924692 None:intergenic
ATATTCTTGCATTATCCAAT+TGG 0.402397 4_1:-59924083 None:intergenic
GTGTGGTGGGTGTCAAGGTT+TGG 0.404409 4_1:-59923487 None:intergenic
CTTGCATTATCCAATTGGTT+TGG 0.405683 4_1:-59924078 None:intergenic
AATGGTACTATTATAGTAGA+AGG 0.419835 4_1:+59923918 Msa0560660:CDS
AATGTTTGTAGGTAGAGCTT+TGG 0.421136 4_1:+59923883 Msa0560660:intron
GTAGGTAGAGCTTTGGAAGA+GGG 0.424184 4_1:+59923890 Msa0560660:intron
TGAAGTTGCCATGGATCAAA+TGG 0.443931 4_1:-59923752 None:intergenic
ATCTGGATGACAAGGTAAAA+GGG 0.446209 4_1:-59923705 None:intergenic
TTTGATCCATGGCAACTTCA+AGG 0.450052 4_1:+59923755 Msa0560660:CDS
TCAAGATCAGGGATAACATC+TGG 0.461523 4_1:-59923722 None:intergenic
CTAATGGTAACCAAACCAAT+TGG 0.465135 4_1:+59924068 Msa0560660:CDS
AATGGATAGAGGTCAAGATC+AGG 0.481249 4_1:-59923734 None:intergenic
ACCTCTATCCATTTGATCCA+TGG 0.490738 4_1:+59923744 Msa0560660:CDS
TGTAGGTAGAGCTTTGGAAG+AGG 0.497333 4_1:+59923889 Msa0560660:intron
TATCTAGTGCCCCACTTGCA+GGG 0.505390 4_1:-59924759 None:intergenic
CAGTGGTTATTGGATGCCAA+TGG 0.509528 4_1:+59923961 Msa0560660:CDS
AGCTCAAGCAATAAGAGAGT+TGG 0.517821 4_1:+59924007 Msa0560660:CDS
CATATTGGAGAAGCACCTAA+TGG 0.525131 4_1:+59924052 Msa0560660:CDS
AATGAAAGAGAAATGGAGCT+AGG 0.528322 4_1:-59923534 None:intergenic
ATCAATGAATTATATTGGGA+GGG 0.531082 4_1:-59923449 None:intergenic
GCCATGGATCAAATGGATAG+AGG 0.536595 4_1:-59923745 None:intergenic
AGTGGTTATTGGATGCCAAT+GGG 0.539139 4_1:+59923962 Msa0560660:CDS
ACTTGTTCTTCCATTCCCAT+TGG 0.540129 4_1:-59923977 None:intergenic
GGGAGGGATCGAGTAGTGAA+AGG 0.548310 4_1:-59923433 None:intergenic
AACAATGTTAATCTTCCACC+CGG 0.553928 4_1:+59923623 Msa0560660:CDS
AAGATACCTTGAAGTTGCCA+TGG 0.559700 4_1:-59923761 None:intergenic
ATGATATGATGAAGGTGTGG+TGG 0.561211 4_1:-59923501 None:intergenic
TATGTAGCAGCCCTGCAAGT+GGG 0.564982 4_1:+59924749 Msa0560660:three_prime_UTR
GAAGATGATCAAGATGGAGA+TGG 0.565312 4_1:+59924426 Msa0560660:CDS
GATCAATGAATTATATTGGG+AGG 0.567165 4_1:-59923450 None:intergenic
AAGATGATCAAGATGGAGAT+GGG 0.567207 4_1:+59924427 Msa0560660:CDS
TTATTGGATGCCAATGGGAA+TGG 0.569720 4_1:+59923967 Msa0560660:CDS
TGATATGATGAAGGTGTGGT+GGG 0.575168 4_1:-59923500 None:intergenic
TGAAGGTGTGGTGGGTGTCA+AGG 0.576241 4_1:-59923492 None:intergenic
TCCGACAGATGAAGAGCTTG+TGG 0.584104 4_1:+59923658 Msa0560660:CDS
ATGTAGCAGCCCTGCAAGTG+GGG 0.585226 4_1:+59924750 Msa0560660:three_prime_UTR
AGCAACTTCACTGATTACAA+TGG 0.589690 4_1:-59924711 None:intergenic
TTTGGATGATGATCTGCTAG+AGG 0.602702 4_1:-59924128 None:intergenic
ATGGATAGAGGTCAAGATCA+GGG 0.606057 4_1:-59923733 None:intergenic
ACCACAAGCTCTTCATCTGT+CGG 0.608045 4_1:-59923659 None:intergenic
CTATGTAGCAGCCCTGCAAG+TGG 0.612866 4_1:+59924748 Msa0560660:three_prime_UTR
TAATGAATATGATATGATGA+AGG 0.613547 4_1:-59923509 None:intergenic
TGTCGGATAAAATCTAAACC+CGG 0.617713 4_1:-59923642 None:intergenic
CTTTGGAAGAGGGAAATCAA+TGG 0.623475 4_1:+59923900 Msa0560660:CDS
CGTGATGAAGATGATCAAGA+TGG 0.626157 4_1:+59924420 Msa0560660:CDS
GTCGGATAAAATCTAAACCC+GGG 0.643132 4_1:-59923641 None:intergenic
GGGATAACATCTGGATGACA+AGG 0.648268 4_1:-59923713 None:intergenic
CAAAATAGAATGACTAACAG+TGG 0.651988 4_1:+59923944 Msa0560660:CDS
ACAATGTTAATCTTCCACCC+GGG 0.696944 4_1:+59923624 Msa0560660:CDS
AATATGATATGATGAAGGTG+TGG 0.698949 4_1:-59923504 None:intergenic
GGATAAAATCTAAACCCGGG+TGG 0.700319 4_1:-59923638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTACATTAAATTTTAAATT+TGG + chr4_1:59923816-59923835 Msa0560660:intron 10.0%
!! TTAATTAATTAAATGTTTGT+AGG + chr4_1:59923872-59923891 Msa0560660:intron 10.0%
!!! GTTACATTAAATTTTAAATT+TGG + chr4_1:59923816-59923835 Msa0560660:intron 10.0%
!! TTAATTAATTAAATGTTTGT+AGG + chr4_1:59923872-59923891 Msa0560660:intron 10.0%
!! ATTGATCAATGAATTATATT+GGG - chr4_1:59923456-59923475 None:intergenic 15.0%
!! AATTGATCAATGAATTATAT+TGG - chr4_1:59923457-59923476 None:intergenic 15.0%
!! CTATATTCTCTAAATAATAA+TGG + chr4_1:59923583-59923602 Msa0560660:exon 15.0%
!! ATTGATCAATGAATTATATT+GGG - chr4_1:59923456-59923475 None:intergenic 15.0%
!! AATTGATCAATGAATTATAT+TGG - chr4_1:59923457-59923476 None:intergenic 15.0%
!! CTATATTCTCTAAATAATAA+TGG + chr4_1:59923583-59923602 Msa0560660:exon 15.0%
!! TAATGAATATGATATGATGA+AGG - chr4_1:59923512-59923531 None:intergenic 20.0%
!! GAAATTAAATGAAAGAGAAA+TGG - chr4_1:59923544-59923563 None:intergenic 20.0%
!! TAATGTAACATAGTATGAAT+TGG - chr4_1:59923805-59923824 None:intergenic 20.0%
!! AAATATTATGTGTTCCATAT+TGG + chr4_1:59924037-59924056 Msa0560660:CDS 20.0%
!!! AAGAATATACTAACTGATTT+TGG - chr4_1:59924166-59924185 None:intergenic 20.0%
!!! TACAGAGATATTTAAAATGT+CGG - chr4_1:59924294-59924313 None:intergenic 20.0%
!!! TTATTTTTCCTTTGATTTAG+TGG + chr4_1:59924376-59924395 Msa0560660:intron 20.0%
!!! TATTTTTCCTTTGATTTAGT+GGG + chr4_1:59924377-59924396 Msa0560660:intron 20.0%
!! TAATGAATATGATATGATGA+AGG - chr4_1:59923512-59923531 None:intergenic 20.0%
!! GAAATTAAATGAAAGAGAAA+TGG - chr4_1:59923544-59923563 None:intergenic 20.0%
!! TAATGTAACATAGTATGAAT+TGG - chr4_1:59923805-59923824 None:intergenic 20.0%
!! AAATATTATGTGTTCCATAT+TGG + chr4_1:59924037-59924056 Msa0560660:CDS 20.0%
!!! AAGAATATACTAACTGATTT+TGG - chr4_1:59924166-59924185 None:intergenic 20.0%
!!! TACAGAGATATTTAAAATGT+CGG - chr4_1:59924294-59924313 None:intergenic 20.0%
!!! TTATTTTTCCTTTGATTTAG+TGG + chr4_1:59924376-59924395 Msa0560660:intron 20.0%
!!! TATTTTTCCTTTGATTTAGT+GGG + chr4_1:59924377-59924396 Msa0560660:intron 20.0%
! ATCAATGAATTATATTGGGA+GGG - chr4_1:59923452-59923471 None:intergenic 25.0%
! TATTCACACACATAAGATAA+TGG - chr4_1:59923847-59923866 None:intergenic 25.0%
! AATGGTACTATTATAGTAGA+AGG + chr4_1:59923918-59923937 Msa0560660:CDS 25.0%
! ATATTCTTGCATTATCCAAT+TGG - chr4_1:59924086-59924105 None:intergenic 25.0%
!!! TTTTGGTTGTGATTTTCTTT+TGG - chr4_1:59924149-59924168 None:intergenic 25.0%
!! ACAGAGATATTTAAAATGTC+GGG - chr4_1:59924293-59924312 None:intergenic 25.0%
!! AATTAGCTACATTTTCCAAA+TGG + chr4_1:59924587-59924606 Msa0560660:three_prime_UTR 25.0%
!! ATTAGCTACATTTTCCAAAT+GGG + chr4_1:59924588-59924607 Msa0560660:three_prime_UTR 25.0%
! TTAGATATTTATCTCCCATT+TGG - chr4_1:59924605-59924624 None:intergenic 25.0%
! ATCAATGAATTATATTGGGA+GGG - chr4_1:59923452-59923471 None:intergenic 25.0%
! TATTCACACACATAAGATAA+TGG - chr4_1:59923847-59923866 None:intergenic 25.0%
! AATGGTACTATTATAGTAGA+AGG + chr4_1:59923918-59923937 Msa0560660:CDS 25.0%
! ATATTCTTGCATTATCCAAT+TGG - chr4_1:59924086-59924105 None:intergenic 25.0%
!!! TTTTGGTTGTGATTTTCTTT+TGG - chr4_1:59924149-59924168 None:intergenic 25.0%
!! ACAGAGATATTTAAAATGTC+GGG - chr4_1:59924293-59924312 None:intergenic 25.0%
!! AATTAGCTACATTTTCCAAA+TGG + chr4_1:59924587-59924606 Msa0560660:three_prime_UTR 25.0%
!! ATTAGCTACATTTTCCAAAT+GGG + chr4_1:59924588-59924607 Msa0560660:three_prime_UTR 25.0%
! TTAGATATTTATCTCCCATT+TGG - chr4_1:59924605-59924624 None:intergenic 25.0%
GATCAATGAATTATATTGGG+AGG - chr4_1:59923453-59923472 None:intergenic 30.0%
AATATGATATGATGAAGGTG+TGG - chr4_1:59923507-59923526 None:intergenic 30.0%
AAGCCTTTCTATGAAGAAAA+TGG - chr4_1:59923685-59923704 None:intergenic 30.0%
CAAAATAGAATGACTAACAG+TGG + chr4_1:59923944-59923963 Msa0560660:CDS 30.0%
TGCATTTGCATCATCTAATT+TGG - chr4_1:59924516-59924535 None:intergenic 30.0%
ACGTCATATTGCATATTGTT+TGG - chr4_1:59924802-59924821 None:intergenic 30.0%
GATCAATGAATTATATTGGG+AGG - chr4_1:59923453-59923472 None:intergenic 30.0%
AATATGATATGATGAAGGTG+TGG - chr4_1:59923507-59923526 None:intergenic 30.0%
AAGCCTTTCTATGAAGAAAA+TGG - chr4_1:59923685-59923704 None:intergenic 30.0%
CAAAATAGAATGACTAACAG+TGG + chr4_1:59923944-59923963 Msa0560660:CDS 30.0%
TGCATTTGCATCATCTAATT+TGG - chr4_1:59924516-59924535 None:intergenic 30.0%
ACGTCATATTGCATATTGTT+TGG - chr4_1:59924802-59924821 None:intergenic 30.0%
AATGAAAGAGAAATGGAGCT+AGG - chr4_1:59923537-59923556 None:intergenic 35.0%
AACAATGTTAATCTTCCACC+CGG + chr4_1:59923623-59923642 Msa0560660:CDS 35.0%
TGTCGGATAAAATCTAAACC+CGG - chr4_1:59923645-59923664 None:intergenic 35.0%
! GGTCCATTTTCTTCATAGAA+AGG + chr4_1:59923679-59923698 Msa0560660:CDS 35.0%
ATCTGGATGACAAGGTAAAA+GGG - chr4_1:59923708-59923727 None:intergenic 35.0%
AATGTTTGTAGGTAGAGCTT+TGG + chr4_1:59923883-59923902 Msa0560660:intron 35.0%
GAATGACTAACAGTGGTTAT+TGG + chr4_1:59923951-59923970 Msa0560660:CDS 35.0%
!! CAATTGGTTTGGTTACCATT+AGG - chr4_1:59924070-59924089 None:intergenic 35.0%
CTAATGGTAACCAAACCAAT+TGG + chr4_1:59924068-59924087 Msa0560660:CDS 35.0%
CTTGCATTATCCAATTGGTT+TGG - chr4_1:59924081-59924100 None:intergenic 35.0%
!! AATGTGCTGAGTTTTGTCAT+TGG - chr4_1:59924230-59924249 None:intergenic 35.0%
CATATCACCCACTAAATCAA+AGG - chr4_1:59924387-59924406 None:intergenic 35.0%
AAGATGATCAAGATGGAGAT+GGG + chr4_1:59924427-59924446 Msa0560660:CDS 35.0%
ATGGAAGCTAAAGTAGCTAT+TGG - chr4_1:59924695-59924714 None:intergenic 35.0%
! AGCAACTTCACTGATTACAA+TGG - chr4_1:59924714-59924733 None:intergenic 35.0%
AATGAAAGAGAAATGGAGCT+AGG - chr4_1:59923537-59923556 None:intergenic 35.0%
AACAATGTTAATCTTCCACC+CGG + chr4_1:59923623-59923642 Msa0560660:CDS 35.0%
TGTCGGATAAAATCTAAACC+CGG - chr4_1:59923645-59923664 None:intergenic 35.0%
! GGTCCATTTTCTTCATAGAA+AGG + chr4_1:59923679-59923698 Msa0560660:CDS 35.0%
ATCTGGATGACAAGGTAAAA+GGG - chr4_1:59923708-59923727 None:intergenic 35.0%
AATGTTTGTAGGTAGAGCTT+TGG + chr4_1:59923883-59923902 Msa0560660:intron 35.0%
GAATGACTAACAGTGGTTAT+TGG + chr4_1:59923951-59923970 Msa0560660:CDS 35.0%
!! CAATTGGTTTGGTTACCATT+AGG - chr4_1:59924070-59924089 None:intergenic 35.0%
CTAATGGTAACCAAACCAAT+TGG + chr4_1:59924068-59924087 Msa0560660:CDS 35.0%
CTTGCATTATCCAATTGGTT+TGG - chr4_1:59924081-59924100 None:intergenic 35.0%
!! AATGTGCTGAGTTTTGTCAT+TGG - chr4_1:59924230-59924249 None:intergenic 35.0%
CATATCACCCACTAAATCAA+AGG - chr4_1:59924387-59924406 None:intergenic 35.0%
AAGATGATCAAGATGGAGAT+GGG + chr4_1:59924427-59924446 Msa0560660:CDS 35.0%
ATGGAAGCTAAAGTAGCTAT+TGG - chr4_1:59924695-59924714 None:intergenic 35.0%
! AGCAACTTCACTGATTACAA+TGG - chr4_1:59924714-59924733 None:intergenic 35.0%
! TGATATGATGAAGGTGTGGT+GGG - chr4_1:59923503-59923522 None:intergenic 40.0%
! ATGATATGATGAAGGTGTGG+TGG - chr4_1:59923504-59923523 None:intergenic 40.0%
ACAATGTTAATCTTCCACCC+GGG + chr4_1:59923624-59923643 Msa0560660:CDS 40.0%
GTCGGATAAAATCTAAACCC+GGG - chr4_1:59923644-59923663 None:intergenic 40.0%
CATCTGGATGACAAGGTAAA+AGG - chr4_1:59923709-59923728 None:intergenic 40.0%
TCAAGATCAGGGATAACATC+TGG - chr4_1:59923725-59923744 None:intergenic 40.0%
ATGGATAGAGGTCAAGATCA+GGG - chr4_1:59923736-59923755 None:intergenic 40.0%
AATGGATAGAGGTCAAGATC+AGG - chr4_1:59923737-59923756 None:intergenic 40.0%
ACCTCTATCCATTTGATCCA+TGG + chr4_1:59923744-59923763 Msa0560660:CDS 40.0%
TGAAGTTGCCATGGATCAAA+TGG - chr4_1:59923755-59923774 None:intergenic 40.0%
TTTGATCCATGGCAACTTCA+AGG + chr4_1:59923755-59923774 Msa0560660:CDS 40.0%
AAGATACCTTGAAGTTGCCA+TGG - chr4_1:59923764-59923783 None:intergenic 40.0%
! CTTTGGAAGAGGGAAATCAA+TGG + chr4_1:59923900-59923919 Msa0560660:CDS 40.0%
AGTGGTTATTGGATGCCAAT+GGG + chr4_1:59923962-59923981 Msa0560660:CDS 40.0%
TTATTGGATGCCAATGGGAA+TGG + chr4_1:59923967-59923986 Msa0560660:CDS 40.0%
ACTTGTTCTTCCATTCCCAT+TGG - chr4_1:59923980-59923999 None:intergenic 40.0%
AGCTCAAGCAATAAGAGAGT+TGG + chr4_1:59924007-59924026 Msa0560660:CDS 40.0%
CATTAGGTGCTTCTCCAATA+TGG - chr4_1:59924054-59924073 None:intergenic 40.0%
!! CATATTGGAGAAGCACCTAA+TGG + chr4_1:59924052-59924071 Msa0560660:CDS 40.0%
TTTGGATGATGATCTGCTAG+AGG - chr4_1:59924131-59924150 None:intergenic 40.0%
CGTGATGAAGATGATCAAGA+TGG + chr4_1:59924420-59924439 Msa0560660:CDS 40.0%
GAAGATGATCAAGATGGAGA+TGG + chr4_1:59924426-59924445 Msa0560660:CDS 40.0%
! TGATATGATGAAGGTGTGGT+GGG - chr4_1:59923503-59923522 None:intergenic 40.0%
! ATGATATGATGAAGGTGTGG+TGG - chr4_1:59923504-59923523 None:intergenic 40.0%
ACAATGTTAATCTTCCACCC+GGG + chr4_1:59923624-59923643 Msa0560660:CDS 40.0%
GTCGGATAAAATCTAAACCC+GGG - chr4_1:59923644-59923663 None:intergenic 40.0%
CATCTGGATGACAAGGTAAA+AGG - chr4_1:59923709-59923728 None:intergenic 40.0%
TCAAGATCAGGGATAACATC+TGG - chr4_1:59923725-59923744 None:intergenic 40.0%
ATGGATAGAGGTCAAGATCA+GGG - chr4_1:59923736-59923755 None:intergenic 40.0%
AATGGATAGAGGTCAAGATC+AGG - chr4_1:59923737-59923756 None:intergenic 40.0%
ACCTCTATCCATTTGATCCA+TGG + chr4_1:59923744-59923763 Msa0560660:CDS 40.0%
TGAAGTTGCCATGGATCAAA+TGG - chr4_1:59923755-59923774 None:intergenic 40.0%
TTTGATCCATGGCAACTTCA+AGG + chr4_1:59923755-59923774 Msa0560660:CDS 40.0%
AAGATACCTTGAAGTTGCCA+TGG - chr4_1:59923764-59923783 None:intergenic 40.0%
! CTTTGGAAGAGGGAAATCAA+TGG + chr4_1:59923900-59923919 Msa0560660:CDS 40.0%
AGTGGTTATTGGATGCCAAT+GGG + chr4_1:59923962-59923981 Msa0560660:CDS 40.0%
TTATTGGATGCCAATGGGAA+TGG + chr4_1:59923967-59923986 Msa0560660:CDS 40.0%
ACTTGTTCTTCCATTCCCAT+TGG - chr4_1:59923980-59923999 None:intergenic 40.0%
AGCTCAAGCAATAAGAGAGT+TGG + chr4_1:59924007-59924026 Msa0560660:CDS 40.0%
CATTAGGTGCTTCTCCAATA+TGG - chr4_1:59924054-59924073 None:intergenic 40.0%
!! CATATTGGAGAAGCACCTAA+TGG + chr4_1:59924052-59924071 Msa0560660:CDS 40.0%
TTTGGATGATGATCTGCTAG+AGG - chr4_1:59924131-59924150 None:intergenic 40.0%
CGTGATGAAGATGATCAAGA+TGG + chr4_1:59924420-59924439 Msa0560660:CDS 40.0%
GAAGATGATCAAGATGGAGA+TGG + chr4_1:59924426-59924445 Msa0560660:CDS 40.0%
GGATAAAATCTAAACCCGGG+TGG - chr4_1:59923641-59923660 None:intergenic 45.0%
ACCACAAGCTCTTCATCTGT+CGG - chr4_1:59923662-59923681 None:intergenic 45.0%
GGGATAACATCTGGATGACA+AGG - chr4_1:59923716-59923735 None:intergenic 45.0%
GCCATGGATCAAATGGATAG+AGG - chr4_1:59923748-59923767 None:intergenic 45.0%
!! TGTAGGTAGAGCTTTGGAAG+AGG + chr4_1:59923889-59923908 Msa0560660:intron 45.0%
!! GTAGGTAGAGCTTTGGAAGA+GGG + chr4_1:59923890-59923909 Msa0560660:intron 45.0%
CAGTGGTTATTGGATGCCAA+TGG + chr4_1:59923961-59923980 Msa0560660:CDS 45.0%
!! CACATTAAGTGCCGAGAAGA+GGG + chr4_1:59924244-59924263 Msa0560660:intron 45.0%
!! ACATTAAGTGCCGAGAAGAG+GGG + chr4_1:59924245-59924264 Msa0560660:intron 45.0%
ACTTGCAATACCCCTCTTCT+CGG - chr4_1:59924258-59924277 None:intergenic 45.0%
TGGGACAGAGCTATCTTGTT+TGG + chr4_1:59924446-59924465 Msa0560660:CDS 45.0%
GGATAAAATCTAAACCCGGG+TGG - chr4_1:59923641-59923660 None:intergenic 45.0%
ACCACAAGCTCTTCATCTGT+CGG - chr4_1:59923662-59923681 None:intergenic 45.0%
GGGATAACATCTGGATGACA+AGG - chr4_1:59923716-59923735 None:intergenic 45.0%
GCCATGGATCAAATGGATAG+AGG - chr4_1:59923748-59923767 None:intergenic 45.0%
!! TGTAGGTAGAGCTTTGGAAG+AGG + chr4_1:59923889-59923908 Msa0560660:intron 45.0%
!! GTAGGTAGAGCTTTGGAAGA+GGG + chr4_1:59923890-59923909 Msa0560660:intron 45.0%
CAGTGGTTATTGGATGCCAA+TGG + chr4_1:59923961-59923980 Msa0560660:CDS 45.0%
!! CACATTAAGTGCCGAGAAGA+GGG + chr4_1:59924244-59924263 Msa0560660:intron 45.0%
!! ACATTAAGTGCCGAGAAGAG+GGG + chr4_1:59924245-59924264 Msa0560660:intron 45.0%
ACTTGCAATACCCCTCTTCT+CGG - chr4_1:59924258-59924277 None:intergenic 45.0%
TGGGACAGAGCTATCTTGTT+TGG + chr4_1:59924446-59924465 Msa0560660:CDS 45.0%
TCCGACAGATGAAGAGCTTG+TGG + chr4_1:59923658-59923677 Msa0560660:CDS 50.0%
!! GCACATTAAGTGCCGAGAAG+AGG + chr4_1:59924243-59924262 Msa0560660:intron 50.0%
TATGTAGCAGCCCTGCAAGT+GGG + chr4_1:59924749-59924768 Msa0560660:three_prime_UTR 50.0%
TATCTAGTGCCCCACTTGCA+GGG - chr4_1:59924762-59924781 None:intergenic 50.0%
ATATCTAGTGCCCCACTTGC+AGG - chr4_1:59924763-59924782 None:intergenic 50.0%
TCCGACAGATGAAGAGCTTG+TGG + chr4_1:59923658-59923677 Msa0560660:CDS 50.0%
!! GCACATTAAGTGCCGAGAAG+AGG + chr4_1:59924243-59924262 Msa0560660:intron 50.0%
TATGTAGCAGCCCTGCAAGT+GGG + chr4_1:59924749-59924768 Msa0560660:three_prime_UTR 50.0%
TATCTAGTGCCCCACTTGCA+GGG - chr4_1:59924762-59924781 None:intergenic 50.0%
ATATCTAGTGCCCCACTTGC+AGG - chr4_1:59924763-59924782 None:intergenic 50.0%
!! GTGTGGTGGGTGTCAAGGTT+TGG - chr4_1:59923490-59923509 None:intergenic 55.0%
!! TGAAGGTGTGGTGGGTGTCA+AGG - chr4_1:59923495-59923514 None:intergenic 55.0%
CTATGTAGCAGCCCTGCAAG+TGG + chr4_1:59924748-59924767 Msa0560660:three_prime_UTR 55.0%
ATGTAGCAGCCCTGCAAGTG+GGG + chr4_1:59924750-59924769 Msa0560660:three_prime_UTR 55.0%
!! GTGTGGTGGGTGTCAAGGTT+TGG - chr4_1:59923490-59923509 None:intergenic 55.0%
!! TGAAGGTGTGGTGGGTGTCA+AGG - chr4_1:59923495-59923514 None:intergenic 55.0%
CTATGTAGCAGCCCTGCAAG+TGG + chr4_1:59924748-59924767 Msa0560660:three_prime_UTR 55.0%
ATGTAGCAGCCCTGCAAGTG+GGG + chr4_1:59924750-59924769 Msa0560660:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59923436 59924833 59923436 ID=Msa0560660;Name=Msa0560660
chr4_1 mRNA 59923436 59924833 59923436 ID=Msa0560660-mRNA-1;Parent=Msa0560660;Name=Msa0560660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|1|1|3|312|192
chr4_1 exon 59923436 59923776 59923436 ID=Msa0560660-mRNA-1:exon:18624;Parent=Msa0560660-mRNA-1
chr4_1 exon 59923894 59924171 59923894 ID=Msa0560660-mRNA-1:exon:18625;Parent=Msa0560660-mRNA-1
chr4_1 exon 59924396 59924833 59924396 ID=Msa0560660-mRNA-1:exon:18626;Parent=Msa0560660-mRNA-1
chr4_1 five_prime_UTR 59923436 59923601 59923436 ID=Msa0560660-mRNA-1:five_prime_utr;Parent=Msa0560660-mRNA-1
chr4_1 CDS 59923602 59923776 59923602 ID=Msa0560660-mRNA-1:cds;Parent=Msa0560660-mRNA-1
chr4_1 CDS 59923894 59924171 59923894 ID=Msa0560660-mRNA-1:cds;Parent=Msa0560660-mRNA-1
chr4_1 CDS 59924396 59924521 59924396 ID=Msa0560660-mRNA-1:cds;Parent=Msa0560660-mRNA-1
chr4_1 three_prime_UTR 59924522 59924833 59924522 ID=Msa0560660-mRNA-1:three_prime_utr;Parent=Msa0560660-mRNA-1
Gene Sequence

>Msa0560660

ATGGTAGATAATAATACTAATAACAATGTTAATCTTCCACCCGGGTTTAGATTTTATCCGACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCTTCCCTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGTAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAACAGTGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGCTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATATTGGAGAAGCACCTAATGGTAACCAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCTTCCTCTAGCAGATCATCATCCAAAAGAAAATCACAACCAAAATCATGGGTGATATGTCGAGTTTATGAGCGTGATGAAGATGATCAAGATGGAGATGGGACAGAGCTATCTTGTTTGGATGAAGTTTTCTTGTCATTAGATGATCTTGATGAAGTAAGCTTGCCAAATTAG
Protein sequence

>Msa0560660

MVDNNTNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNSGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRLSDSASSSSRSSSKRKSQPKSWVICRVYERDEDDQDGDGTELSCLDEVFLSLDDLDEVSLPN*