AlfalfaGEDB | Msa0697880

M. sativa cultivar zhongmu-4 / Msa0697880

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043067 GO:0048367 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697880	QDC33491.1	100.000	192	0	0	1	192	1	192	1.73e-141	402

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697880	sp\|Q8GWK6\|NC104_ARATH	66.492	191	51	3	10	191	1	187	5.33e-83	246

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697880	A0A4Y5ULN3	100.000	192	0	0	1	192	1	192	8.26e-142	402

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TFs/TRs:

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Gene ID	Type	Classification
Msa0697880	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036140	Msa0697880	0.802959	4.379313e-49	-8.615850e-47
Msa0241140	Msa0697880	0.836437	9.362524e-57	-8.615850e-47
Msa0518380	Msa0697880	0.800796	1.218406e-48	-8.615850e-47
Msa0560660	Msa0697880	0.911791	4.076402e-83	-8.615850e-47
Msa0614610	Msa0697880	0.877908	4.306410e-69	-8.615850e-47
Msa0639270	Msa0697880	0.921649	2.728663e-88	-8.615850e-47
Msa0658890	Msa0697880	0.800476	1.415948e-48	-8.615850e-47
Msa0697880	Msa0704920	0.818070	2.374974e-52	-8.615850e-47
Msa0697880	Msa0717890	0.800617	1.325220e-48	-8.615850e-47
Msa0697880	Msa0738030	0.832253	1.050521e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697880	MtrunA17_Chr4g0050701	98.438	192	2	1	1	192	1	191	4.58e-142	393
Msa0697880	MtrunA17_Chr8g0384351	46.040	202	74	8	6	192	4	185	3.56e-50	160
Msa0697880	MtrunA17_Chr3g0130321	40.580	207	100	7	7	191	2	207	9.42e-47	152
Msa0697880	MtrunA17_Chr2g0318101	42.945	163	80	2	11	160	14	176	3.90e-43	147
Msa0697880	MtrunA17_Chr4g0042561	42.675	157	78	3	12	160	9	161	7.11e-42	142
Msa0697880	MtrunA17_Chr8g0359921	42.683	164	80	3	10	165	12	169	2.35e-41	142
Msa0697880	MtrunA17_Chr4g0047841	40.000	175	80	2	11	160	14	188	3.16e-41	142
Msa0697880	MtrunA17_Chr3g0124761	42.857	161	78	3	8	160	3	157	4.48e-40	137
Msa0697880	MtrunA17_Chr2g0318081	42.073	164	79	4	10	165	14	169	5.74e-40	139
Msa0697880	MtrunA17_Chr7g0263931	39.881	168	89	3	2	160	1	165	7.28e-40	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697880	AT5G64530.1	66.492	191	51	3	10	191	1	187	5.42e-84	246
Msa0697880	AT5G64530.2	70.161	124	33	1	10	133	1	120	2.53e-63	193
Msa0697880	AT4G27410.2	43.293	164	77	3	10	165	12	167	2.07e-41	141
Msa0697880	AT1G69490.1	39.474	190	96	5	11	186	8	192	5.14e-41	140
Msa0697880	AT1G52890.1	43.902	164	76	4	10	165	12	167	5.89e-41	141
Msa0697880	AT3G15500.1	44.512	164	75	4	10	165	12	167	1.00e-40	140
Msa0697880	AT1G61110.1	42.424	165	80	4	11	161	15	178	1.09e-40	140
Msa0697880	AT1G01720.1	38.860	193	100	5	10	191	5	190	2.06e-39	136
Msa0697880	AT4G27410.3	39.779	181	76	4	10	165	12	184	3.39e-38	134
Msa0697880	AT3G04070.2	40.741	162	84	3	11	160	9	170	3.80e-38	134

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Find 69 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTATGTGTTCCATAT+TGG	0.324951	4_4:+67920666	Msa0697880:CDS
AACAATGTTAATCTTCCACC+CGG	0.553928	4_4:+67920251	Msa0697880:CDS
AAGAATATACTAACTGATTT+TGG	0.171613	4_4:-67920792	None:intergenic
AAGATACCTTGAAGTTGCCA+TGG	0.559700	4_4:-67920389	None:intergenic
AAGATGATCAAGATGGAGAT+GGG	0.567207	4_4:+67921057	Msa0697880:CDS
AAGCCTTTCTATGAAGAAAA+TGG	0.313106	4_4:-67920310	None:intergenic
AATATGATATGATGAAGGTG+TGG	0.698949	4_4:-67920142	None:intergenic
AATGAAAGAGAAATGGAGCT+AGG	0.497819	4_4:-67920172	None:intergenic
AATGGATAGAGGTCAAGATC+AGG	0.481249	4_4:-67920362	None:intergenic
AATGGTACTATTATAGTAGA+AGG	0.419835	4_4:+67920547	Msa0697880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGATATGATGAAGGTG+TGG	-	chr4_4:67920145-67920164	None:intergenic	30.0%
AAGCCTTTCTATGAAGAAAA+TGG	-	chr4_4:67920313-67920332	None:intergenic	30.0%
CAAAATAGAATGACTAACAG+TGG	+	chr4_4:67920573-67920592	Msa0697880:CDS	30.0%
TGCATTTGCATCATCTAATT+TGG	-	chr4_4:67921146-67921165	None:intergenic	30.0%
ACGTCATATTGCATATTGTT+TGG	-	chr4_4:67921431-67921450	None:intergenic	30.0%
AATATGATATGATGAAGGTG+TGG	-	chr4_4:67920145-67920164	None:intergenic	30.0%
AAGCCTTTCTATGAAGAAAA+TGG	-	chr4_4:67920313-67920332	None:intergenic	30.0%
CAAAATAGAATGACTAACAG+TGG	+	chr4_4:67920573-67920592	Msa0697880:CDS	30.0%
TGCATTTGCATCATCTAATT+TGG	-	chr4_4:67921146-67921165	None:intergenic	30.0%
ACGTCATATTGCATATTGTT+TGG	-	chr4_4:67921431-67921450	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	67920073	67921462	67920073	ID=Msa0697880;Name=Msa0697880
chr4_4	mRNA	67920073	67921462	67920073	ID=Msa0697880-mRNA-1;Parent=Msa0697880;Name=Msa0697880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=157\|1\|1\|1\|1\|1\|3\|311\|192
chr4_4	exon	67920073	67920404	67920073	ID=Msa0697880-mRNA-1:exon:20138;Parent=Msa0697880-mRNA-1
chr4_4	exon	67920523	67920800	67920523	ID=Msa0697880-mRNA-1:exon:20139;Parent=Msa0697880-mRNA-1
chr4_4	exon	67921026	67921462	67921026	ID=Msa0697880-mRNA-1:exon:20140;Parent=Msa0697880-mRNA-1
chr4_4	five_prime_UTR	67920073	67920229	67920073	ID=Msa0697880-mRNA-1:five_prime_utr;Parent=Msa0697880-mRNA-1
chr4_4	CDS	67920230	67920404	67920230	ID=Msa0697880-mRNA-1:cds;Parent=Msa0697880-mRNA-1
chr4_4	CDS	67920523	67920800	67920523	ID=Msa0697880-mRNA-1:cds;Parent=Msa0697880-mRNA-1
chr4_4	CDS	67921026	67921151	67921026	ID=Msa0697880-mRNA-1:cds;Parent=Msa0697880-mRNA-1
chr4_4	three_prime_UTR	67921152	67921462	67921152	ID=Msa0697880-mRNA-1:three_prime_utr;Parent=Msa0697880-mRNA-1

Gene Sequence

>Msa0697880

ATGGTAGATAATAATACTAATAACAATGTTAATCTTCCACCCGGGTTTAGATTTTATCCGACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCTTCCCTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGTAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAACAGTGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGCTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATATTGGAGAAGCACCTAATGGTAACCAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCTTCCTCTAGCAGATCATCATCCAAAAGAAAATCACAACCAAAATCATGGGTGATATGTCGAGTTTATGAGCGTGATGAAGATGATCAAGATGGAGATGGGACAGAGCTATCTTGTTTGGATGAAGTTTTCTTGTCATTAGATGATCTTGATGAAGTAAGCTTGCCAAATTAG

Protein sequence

>Msa0697880

MVDNNTNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNSGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRLSDSASSSSRSSSKRKSQPKSWVICRVYERDEDDQDGDGTELSCLDEVFLSLDDLDEVSLPN*