AlfalfaGEDB | Msa0564740

M. sativa cultivar zhongmu-4 / Msa0564740

KEGG: K02880
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904
PFAM: PF00237.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564740	XP_013446562.1	98.750	160	2	0	2	161	14	173	9.34e-114	330

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564740	sp\|Q93VI3\|RL171_ARATH	87.500	160	20	0	2	161	14	173	2.11e-104	299

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564740	I3SHA1	98.750	160	2	0	2	161	14	173	4.46e-114	330

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0564740	Msa0568380	0.843968	1.010644e-58	-8.615850e-47
Msa0564740	Msa0585570	0.806324	8.691776e-50	-8.615850e-47
Msa0564740	Msa1341780	0.805894	1.070942e-49	-8.615850e-47
Msa0564740	Msa1367540	0.800492	1.405192e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564740	MtrunA17_Chr8g0377301	98.750	160	2	0	2	161	14	173	8.59e-118	330
Msa0564740	MtrunA17_Chr3g0122641	95.000	160	8	0	2	161	14	173	3.86e-115	323

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0564740	AT1G27400.1	87.500	160	20	0	2	161	14	173	2.15e-105	299
Msa0564740	AT1G67430.1	86.875	160	21	0	2	161	14	173	4.57e-105	298
Msa0564740	AT1G67430.2	61.875	160	17	1	2	161	14	129	5.04e-62	187

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Find 54 sgRNAs with CRISPR-Local

Find 870 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAACTCAATGTGGCA+AGG	0.612514	4_1:-65470712	None:intergenic
AAGAAGAGGGCTTAAACTCT+AGG	0.479337	4_1:+65470891	Msa0564740:exon
AATAGACACTCTAATGGACA+AGG	0.667364	4_1:+65470300	Msa0564740:CDS
AATTGTACTTGCAGAACACT+AGG	0.474152	4_1:+65470145	Msa0564740:intron
AATTGTCAAACATGATTCTC+CGG	0.475762	4_1:+65471066	Msa0564740:three_prime_UTR
ACAGAAACGTCTGAATGGAA+TGG	0.621533	4_1:-65470247	None:intergenic
ACATACGGTTGATTCTTCCA+TGG	0.528331	4_1:-65470578	None:intergenic
ACTCTAATGGACAAGGAAGG+TGG	0.651493	4_1:+65470307	Msa0564740:CDS
AGACGTTCTTGCACACAAAC+AGG	0.445626	4_1:+65470224	Msa0564740:CDS
AGACGTTTCTGTCGTGGTGT+TGG	0.422500	4_1:+65470258	Msa0564740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCAAATAAAAAGGAATGG+AGG	-	chr4_1:65462092-65462111	None:intergenic	30.0%
AGCTGATTACACACATATTA+AGG	+	chr4_1:65461722-65461741	Msa0564740:intron	30.0%
AAAAAAGCAAGGAGTAATCA+TGG	-	chr4_1:65461808-65461827	None:intergenic	30.0%
ACCGTTCATTTAAGAAGATT+TGG	-	chr4_1:65461843-65461862	None:intergenic	30.0%
AAATCTTCTTAAATGAACGG+TGG	+	chr4_1:65461842-65461861	Msa0564740:intron	30.0%
AATCTTCTTAAATGAACGGT+GGG	+	chr4_1:65461843-65461862	Msa0564740:intron	30.0%
AATTGTGACAAGGGTAAAAT+TGG	+	chr4_1:65462008-65462027	Msa0564740:intron	30.0%
CATCAAATAAAAAGGAATGG+AGG	+	chr4_1:65462092-65462111	Msa0564740:intron	30.0%
TTAAAAATGGTGGTTGGAAT+TGG	+	chr4_1:65462836-65462855	Msa0564740:intron	30.0%
TAAAAATGGTGGTTGGAATT+GGG	+	chr4_1:65462837-65462856	Msa0564740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	65461609	65471151	65461609	ID=Msa0564740;Name=Msa0564740
chr4_1	mRNA	65461609	65471151	65461609	ID=Msa0564740-mRNA-1;Parent=Msa0564740;Name=Msa0564740-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0.8\|0.66\|0.83\|1\|1\|6\|246\|161
chr4_1	exon	65461609	65461612	65461609	ID=Msa0564740-mRNA-1:exon:21094;Parent=Msa0564740-mRNA-1
chr4_1	exon	65467219	65467259	65467219	ID=Msa0564740-mRNA-1:exon:21095;Parent=Msa0564740-mRNA-1
chr4_1	exon	65470159	65470389	65470159	ID=Msa0564740-mRNA-1:exon:21096;Parent=Msa0564740-mRNA-1
chr4_1	exon	65470492	65470594	65470492	ID=Msa0564740-mRNA-1:exon:21097;Parent=Msa0564740-mRNA-1
chr4_1	exon	65470698	65470765	65470698	ID=Msa0564740-mRNA-1:exon:21098;Parent=Msa0564740-mRNA-1
chr4_1	exon	65470867	65471151	65470867	ID=Msa0564740-mRNA-1:exon:21099;Parent=Msa0564740-mRNA-1
chr4_1	CDS	65461609	65461612	65461609	ID=Msa0564740-mRNA-1:cds;Parent=Msa0564740-mRNA-1
chr4_1	CDS	65467219	65467259	65467219	ID=Msa0564740-mRNA-1:cds;Parent=Msa0564740-mRNA-1
chr4_1	CDS	65470159	65470389	65470159	ID=Msa0564740-mRNA-1:cds;Parent=Msa0564740-mRNA-1
chr4_1	CDS	65470492	65470594	65470492	ID=Msa0564740-mRNA-1:cds;Parent=Msa0564740-mRNA-1
chr4_1	CDS	65470698	65470765	65470698	ID=Msa0564740-mRNA-1:cds;Parent=Msa0564740-mRNA-1
chr4_1	CDS	65470867	65470905	65470867	ID=Msa0564740-mRNA-1:cds;Parent=Msa0564740-mRNA-1
chr4_1	three_prime_UTR	65470906	65471151	65470906	ID=Msa0564740-mRNA-1:three_prime_utr;Parent=Msa0564740-mRNA-1

Gene Sequence

>Msa0564740

ATGGCCACCAAGGCTCGTGGTGCTGACCTCAGAGTTCATTTCAAGAACACTAGGGAAACCGCCTTTGCCATCAGGAAGTTGCCCTTGACCAAGGCTAAAAGGTACTTGGAAGACGTTCTTGCACACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTTGGGAGGACAGCCCAGGCCAAGAATAGACACTCTAATGGACAAGGAAGGTGGCCAGTCAAGTCAGCAAAGTTTATCCTGGATTTGCTGAAGAATGCAGAGAGTAATGCTGAAGTCAAAGGTTTGGATGTTGATGCTCTATATGTTTCACATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCAGAACATACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCTTGCCACATTGAGTTGATTTTATCTGAAAAGGAAGAGGCAGTTCAGAAAGAGCCGGAGTCCCAGTTGGCAGCAAGCAAGAAGAGGGCTTAA

Protein sequence

>Msa0564740

MATKARGADLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPESQLAASKKRA*