AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367540 MtrunA17_Chr3g0145691 98.333 300 5 0 64 363 1 300 0.0 604
Msa1367540 MtrunA17_Chr8g0347691 90.690 290 27 0 64 353 1 290 0.0 548
Msa1367540 MtrunA17_Chr4g0006821 52.258 155 33 1 190 344 11 124 6.60e-43 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367540 AT5G39740.2 81.164 292 55 0 64 355 1 292 3.86e-180 501
Msa1367540 AT5G39740.1 81.164 292 55 0 64 355 1 292 3.86e-180 501
Msa1367540 AT3G25520.3 81.164 292 55 0 64 355 1 292 1.17e-178 498
Msa1367540 AT3G25520.1 81.164 292 55 0 64 355 1 292 1.17e-178 498
Msa1367540 AT3G25520.2 80.556 180 35 0 176 355 2 181 4.45e-104 304

Find 121 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAACAACGTAACGGTATT+TGG 0.124401 tig0018513:+187569 None:intergenic
AGAAATTATATTCTGGATTC+TGG 0.196770 tig0018513:+186063 None:intergenic
GAGTTGGCCTAGATCAATTT+TGG 0.256726 tig0018513:-185928 Msa1367540:three_prime_UTR
TGCACCAAAGACCCGGTTTC+CGG 0.261045 tig0018513:+187021 None:intergenic
ATGTTATCATTATACTGTTT+GGG 0.270970 tig0018513:-186023 Msa1367540:three_prime_UTR
TCCTTTGGTGGCTGCTTCTC+AGG 0.295727 tig0018513:+186520 None:intergenic
TTATTGCACTGGTCTCCTTT+TGG 0.304693 tig0018513:-187259 Msa1367540:CDS
CCTCGTAGGTGAGCTTCTTC+AGG 0.308472 tig0018513:+186310 None:intergenic
GCTTGATATATTCACTGAAA+TGG 0.313676 tig0018513:+186623 None:intergenic
ACTTTAGATTATATCAGTTT+TGG 0.314688 tig0018513:-186134 Msa1367540:three_prime_UTR
AGGATGACGATGAGTGAAAT+TGG 0.318851 tig0018513:-186224 Msa1367540:exon
TATGTTATCATTATACTGTT+TGG 0.322769 tig0018513:-186024 Msa1367540:three_prime_UTR
GGCTTCAGGGAGCTTTGGAC+GGG 0.327426 tig0018513:-186915 Msa1367540:intron
ACCACCGGAAACCGGGTCTT+TGG 0.336386 tig0018513:-187025 Msa1367540:CDS
CACCTTCGACCGCGGCTGTC+TGG 0.353769 tig0018513:+187844 None:intergenic
ATTGTCTCTGCTACCATTGC+TGG 0.361362 tig0018513:-187446 Msa1367540:CDS
AGTTCTTAAAACTCTTGAAA+TGG 0.366221 tig0018513:-187229 Msa1367540:CDS
TGATACCTCTTGTGTTCCTT+TGG 0.367997 tig0018513:+186505 None:intergenic
TCTTGGGCTGCCTTTGCCTA+CGG 0.372098 tig0018513:+187920 None:intergenic
CTTGATATATTCACTGAAAT+GGG 0.374691 tig0018513:+186624 None:intergenic
AATCGAGGAACTATACAAAA+AGG 0.377398 tig0018513:-186581 Msa1367540:CDS
CACAGCGACAAAAGGTTTGC+TGG 0.383857 tig0018513:-186877 Msa1367540:CDS
CGAACAACGTAACGGTATTT+GGG 0.383918 tig0018513:+187570 None:intergenic
CTTGGGCTGCCTTTGCCTAC+GGG 0.385408 tig0018513:+187921 None:intergenic
TTAAGACCACCACCGGAAAC+CGG 0.405019 tig0018513:-187033 Msa1367540:CDS
TGTTTGGCTTCAGGGAGCTT+TGG 0.408256 tig0018513:-186920 Msa1367540:intron
AACAGCAAGAAATTATATTC+TGG 0.418184 tig0018513:+186056 None:intergenic
TACCTCTTGTGTTCCTTTGG+TGG 0.421148 tig0018513:+186508 None:intergenic
CCGAATGGGTGGTGGGTGAT+TGG 0.423400 tig0018513:+187813 None:intergenic
GAGAGCACGGAATGGCCTCC+TGG 0.423509 tig0018513:+187072 None:intergenic
AAAAGATCCAAAATTGATCT+AGG 0.423761 tig0018513:+185921 None:intergenic
ATTTGAACATACCTTCATAT+AGG 0.435520 tig0018513:+186783 None:intergenic
TTCCGATTCCGAATGGGTGG+TGG 0.437998 tig0018513:+187805 None:intergenic
TGGCTTCAGGGAGCTTTGGA+CGG 0.456348 tig0018513:-186916 Msa1367540:intron
CATAGTTAGTAAGGCCTACA+TGG 0.460963 tig0018513:+187372 None:intergenic
CCTCACTTTGGCCTCCATGT+AGG 0.463629 tig0018513:-187386 Msa1367540:CDS
AAAGACCCGGTTTCCGGTGG+TGG 0.468463 tig0018513:+187027 None:intergenic
ACCCACCACCCATTCGGAAT+CGG 0.470171 tig0018513:-187807 Msa1367540:CDS
TTCCGTGCTCTCCTTGATGT+TGG 0.475927 tig0018513:-187061 Msa1367540:CDS
TCTTATATTACTCAGGCAAC+CGG 0.479611 tig0018513:-187124 Msa1367540:intron
AGATTGTAGGCCAGCTAGGT+TGG 0.483927 tig0018513:+185878 None:intergenic
ACGGGCCTCGTCACTTTATG+TGG 0.485014 tig0018513:+187939 None:intergenic
GCTTCAGGGAGCTTTGGACG+GGG 0.489494 tig0018513:-186914 Msa1367540:intron
ATACCGTTACGTTGTTCGAT+TGG 0.490656 tig0018513:-187565 Msa1367540:intron
TACCTGCAGCATAGTTAGTA+AGG 0.490657 tig0018513:+187363 None:intergenic
ATTTGTATTTCCAACCTAGC+TGG 0.494722 tig0018513:-185888 Msa1367540:three_prime_UTR
CTTCAGGGAGCTTTGGACGG+GGG 0.497730 tig0018513:-186913 Msa1367540:intron
TAAGAACTCGGCGAGCCAAA+AGG 0.499289 tig0018513:+187244 None:intergenic
ACTCAAGACGCTAACAAATA+CGG 0.500093 tig0018513:-187597 Msa1367540:CDS
CCAATCACCCACCACCCATT+CGG 0.501475 tig0018513:-187813 Msa1367540:CDS
GAAATTCAAGAGAAGAAGAG+AGG 0.503110 tig0018513:-187655 Msa1367540:CDS
ACAGCCGCGGTCGAAGGTGC+GGG 0.506236 tig0018513:-187840 Msa1367540:CDS
AGCTTGATGCTGAGGTTCAC+CGG 0.506705 tig0018513:-186834 Msa1367540:CDS
CTTTGTCTTTCTTTCCTCGT+AGG 0.506933 tig0018513:+186296 None:intergenic
GCCTGAGAAGCAGCCACCAA+AGG 0.507172 tig0018513:-186521 Msa1367540:CDS
CAAGCTCTCAATTCTGCAGC+CGG 0.507707 tig0018513:-186258 Msa1367540:CDS
GTCATCCTCATCATCATCTC+CGG 0.510253 tig0018513:+186239 None:intergenic
ATATTCCTCACAGCGACAAA+AGG 0.513989 tig0018513:-186885 Msa1367540:CDS
GTACCATTCCGATTCCGAAT+GGG 0.517511 tig0018513:+187799 None:intergenic
ATGTTACCAGCTTATTGCAC+TGG 0.517859 tig0018513:-187270 Msa1367540:intron
CTGTGGAACCAGCTGACTCC+AGG 0.519286 tig0018513:-187090 Msa1367540:CDS
GTTGATTCAGGCATTTGTGA+AGG 0.519616 tig0018513:-187715 Msa1367540:intron
GACAGCCGCGGTCGAAGGTG+CGG 0.523616 tig0018513:-187841 Msa1367540:CDS
GACGATGAGTGAAATTGGGT+TGG 0.523666 tig0018513:-186219 Msa1367540:exon
CCGGGTCTTTGGTGCACTCA+AGG 0.524232 tig0018513:-187014 Msa1367540:intron
AAATTCAAGAGAAGAAGAGA+GGG 0.524882 tig0018513:-187654 Msa1367540:CDS
AATGGCCTCCTGGAGTCAGC+TGG 0.528100 tig0018513:+187082 None:intergenic
CACCAGACAGCCGCGGTCGA+AGG 0.530457 tig0018513:-187846 Msa1367540:CDS
TTGAGTAATCAAACGAACTC+TGG 0.530507 tig0018513:+187614 None:intergenic
ACGATGAGTGAAATTGGGTT+GGG 0.531052 tig0018513:-186218 Msa1367540:exon
GCACATGAGCTTCCTCACTT+TGG 0.534108 tig0018513:-187398 Msa1367540:CDS
GGATGACGATGAGTGAAATT+GGG 0.538515 tig0018513:-186223 Msa1367540:exon
AAATCGAAACAAGTCTATCC+AGG 0.542261 tig0018513:+186099 None:intergenic
TGTTATCATTATACTGTTTG+GGG 0.542461 tig0018513:-186022 Msa1367540:three_prime_UTR
AATGAGATTGTAGGCCAGCT+AGG 0.542596 tig0018513:+185874 None:intergenic
GAAATGGATGATCAGTATGA+AGG 0.545359 tig0018513:-187213 Msa1367540:CDS
AACTGTCGGAATTTGTGAGT+TGG 0.547764 tig0018513:-185944 Msa1367540:three_prime_UTR
GTGACGAGGCCCGTAGGCAA+AGG 0.553912 tig0018513:-187930 Msa1367540:CDS
GGTCTTGTTAAGACCACCAC+CGG 0.557334 tig0018513:-187040 Msa1367540:CDS
TTCCACAGAATAATCCTCTC+CGG 0.558152 tig0018513:+187105 None:intergenic
AGGAAATTCAAGCTAAACAA+TGG 0.558533 tig0018513:+186187 None:intergenic
CCTTGAGTGCACCAAAGACC+CGG 0.561480 tig0018513:+187014 None:intergenic
TCCGATTCCGAATGGGTGGT+GGG 0.565668 tig0018513:+187806 None:intergenic
GGCCTTACTAACTATGCTGC+AGG 0.566671 tig0018513:-187365 Msa1367540:intron
GAAATCACCTTGCCTTGTGG+TGG 0.569736 tig0018513:+185851 None:intergenic
TAAGACCACCACCGGAAACC+GGG 0.570064 tig0018513:-187032 Msa1367540:CDS
ACATGTTGCTGCCTATATGA+AGG 0.573009 tig0018513:-186794 Msa1367540:intron
TTGTGGTGGAATGAGATTGT+AGG 0.574520 tig0018513:+185865 None:intergenic
GATTGAGGGATCTGCACGAA+TGG 0.575419 tig0018513:+186549 None:intergenic
CGTACCATTCCGATTCCGAA+TGG 0.575768 tig0018513:+187798 None:intergenic
TAATCAAACGAACTCTGGCT+CGG 0.582000 tig0018513:+187619 None:intergenic
AAGAACAATATCACCAGCAA+TGG 0.583771 tig0018513:+187433 None:intergenic
CCACCCATTCGGAATCGGAA+TGG 0.587704 tig0018513:-187802 Msa1367540:intron
CGAGGAAAGAAAGACAAAGT+TGG 0.591281 tig0018513:-186292 Msa1367540:CDS
TTCAGTGAATATATCAAGCG+TGG 0.592838 tig0018513:-186619 Msa1367540:CDS
AAGCGTGGAATTGAAGCGGA+TGG 0.593465 tig0018513:-186604 Msa1367540:CDS
TTCTCTGCACCAGACAGCCG+CGG 0.593497 tig0018513:-187853 Msa1367540:CDS
TCTCATTCCACCACAAGGCA+AGG 0.593883 tig0018513:-185858 Msa1367540:three_prime_UTR
GACCAACATCAAGGAGAGCA+CGG 0.604422 tig0018513:+187059 None:intergenic
TTACCAATCGAACAACGTAA+CGG 0.610329 tig0018513:+187562 None:intergenic
GTTATCATTATACTGTTTGG+GGG 0.616333 tig0018513:-186021 Msa1367540:three_prime_UTR
TCTTAACAAGACCAACATCA+AGG 0.618405 tig0018513:+187050 None:intergenic
ACTGCCCGCACCTTCGACCG+CGG 0.619628 tig0018513:+187836 None:intergenic
ACCAAAGACCCGGTTTCCGG+TGG 0.622290 tig0018513:+187024 None:intergenic
TATCAAGCGTGGAATTGAAG+CGG 0.625635 tig0018513:-186608 Msa1367540:CDS
TACAATCTCATTCCACCACA+AGG 0.626292 tig0018513:-185863 Msa1367540:three_prime_UTR
CCATTCCGATTCCGAATGGG+TGG 0.629206 tig0018513:+187802 None:intergenic
CATAAAGTGACGAGGCCCGT+AGG 0.633384 tig0018513:-187936 Msa1367540:CDS
TCAGAAATCACCTTGCCTTG+TGG 0.649160 tig0018513:+185848 None:intergenic
AATTGAAGCGGATGGAATCG+AGG 0.652387 tig0018513:-186596 Msa1367540:CDS
ACATCAAGGAGAGCACGGAA+TGG 0.653230 tig0018513:+187064 None:intergenic
AGCCACCAAAGGAACACAAG+AGG 0.664029 tig0018513:-186510 Msa1367540:intron
TGCAGCCGGAGATGATGATG+AGG 0.670180 tig0018513:-186244 Msa1367540:CDS
TATTACTCAGGCAACCGGAG+AGG 0.678581 tig0018513:-187119 Msa1367540:intron
TGGAACCAGCTGACTCCAGG+AGG 0.680812 tig0018513:-187087 Msa1367540:CDS
CCTACATGGAGGCCAAAGTG+AGG 0.682005 tig0018513:+187386 None:intergenic
AGTTAGTAAGGCCTACATGG+AGG 0.688944 tig0018513:+187375 None:intergenic
AACCGGAGAGGATTATTCTG+TGG 0.701124 tig0018513:-187107 Msa1367540:CDS
CCTGAAGAAGCTCACCTACG+AGG 0.707001 tig0018513:-186310 Msa1367540:CDS
TCAGTATGAAGGCAATGTTG+AGG 0.719344 tig0018513:-187202 Msa1367540:intron
AGTGTCCACATAAAGTGACG+AGG 0.738233 tig0018513:-187944 Msa1367540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAATTAAAAAAATGAAA+AGG + tig0018513:186976-186995 None:intergenic 10.0%
!!! TTTCATTTTTTTAATTTGTA+AGG - tig0018513:186976-186995 Msa1367540:intron 10.0%
!! AAAAAAAAAAAAAAAACTGT+CGG - tig0018513:187759-187778 Msa1367540:intron 10.0%
!! TACAAATTAAAAAAATGAAA+AGG + tig0018513:186976-186995 None:intergenic 10.0%
!!! TTTCATTTTTTTAATTTGTA+AGG - tig0018513:186976-186995 Msa1367540:intron 10.0%
!! AAAAAAAAAAAAAAAACTGT+CGG - tig0018513:187759-187778 Msa1367540:intron 10.0%
!!! TAGAAATAATAATATGGTTT+TGG + tig0018513:186222-186241 None:intergenic 15.0%
!! TCTACATAGAAATAATAATA+TGG + tig0018513:186228-186247 None:intergenic 15.0%
!!! TAATTATATGGATTAAAAAG+AGG + tig0018513:186408-186427 None:intergenic 15.0%
!!! CGATTAATTTGATAATTATA+TGG + tig0018513:186420-186439 None:intergenic 15.0%
!! TGACATTGATATTTATTAAT+CGG - tig0018513:186771-186790 Msa1367540:intron 15.0%
!!! AGTTTTTTTTTTTTTTTTGC+TGG + tig0018513:187757-187776 None:intergenic 15.0%
!!! TAGAAATAATAATATGGTTT+TGG + tig0018513:186222-186241 None:intergenic 15.0%
!! TCTACATAGAAATAATAATA+TGG + tig0018513:186228-186247 None:intergenic 15.0%
!!! TAATTATATGGATTAAAAAG+AGG + tig0018513:186408-186427 None:intergenic 15.0%
!!! CGATTAATTTGATAATTATA+TGG + tig0018513:186420-186439 None:intergenic 15.0%
!! TGACATTGATATTTATTAAT+CGG - tig0018513:186771-186790 Msa1367540:intron 15.0%
!!! AGTTTTTTTTTTTTTTTTGC+TGG + tig0018513:187757-187776 None:intergenic 15.0%
!!! AGTTAAAAGAGAGTTTTTTA+GGG + tig0018513:185827-185846 None:intergenic 20.0%
!! GACATTGATATTTATTAATC+GGG - tig0018513:186772-186791 Msa1367540:intron 20.0%
!! TGTTCAAATAATGTCTTTAT+TGG - tig0018513:186948-186967 Msa1367540:intron 20.0%
!! GTTCAAATAATGTCTTTATT+GGG - tig0018513:186949-186968 Msa1367540:intron 20.0%
!!! ATTTTTTTTGTAGACATTGA+TGG - tig0018513:187046-187065 Msa1367540:CDS 20.0%
!! AAATACTACTAATTCAAACA+GGG + tig0018513:187288-187307 None:intergenic 20.0%
!! CAACAAAAATTTAACGATTA+AGG + tig0018513:187553-187572 None:intergenic 20.0%
!!! ACTTTAGATTATATCAGTTT+TGG - tig0018513:187583-187602 Msa1367540:CDS 20.0%
!! TATGTTATCATTATACTGTT+TGG - tig0018513:187693-187712 Msa1367540:CDS 20.0%
!! ATGTTATCATTATACTGTTT+GGG - tig0018513:187694-187713 Msa1367540:CDS 20.0%
!!! ATCAATTTTGGATCTTTTAT+TGG - tig0018513:187801-187820 Msa1367540:intron 20.0%
!!! AGTTAAAAGAGAGTTTTTTA+GGG + tig0018513:185827-185846 None:intergenic 20.0%
!! GACATTGATATTTATTAATC+GGG - tig0018513:186772-186791 Msa1367540:intron 20.0%
!! TGTTCAAATAATGTCTTTAT+TGG - tig0018513:186948-186967 Msa1367540:intron 20.0%
!! GTTCAAATAATGTCTTTATT+GGG - tig0018513:186949-186968 Msa1367540:intron 20.0%
!!! ATTTTTTTTGTAGACATTGA+TGG - tig0018513:187046-187065 Msa1367540:CDS 20.0%
!! AAATACTACTAATTCAAACA+GGG + tig0018513:187288-187307 None:intergenic 20.0%
!! CAACAAAAATTTAACGATTA+AGG + tig0018513:187553-187572 None:intergenic 20.0%
!!! ACTTTAGATTATATCAGTTT+TGG - tig0018513:187583-187602 Msa1367540:CDS 20.0%
!! TATGTTATCATTATACTGTT+TGG - tig0018513:187693-187712 Msa1367540:CDS 20.0%
!! ATGTTATCATTATACTGTTT+GGG - tig0018513:187694-187713 Msa1367540:CDS 20.0%
!!! ATCAATTTTGGATCTTTTAT+TGG - tig0018513:187801-187820 Msa1367540:intron 20.0%
!!! CAGTTAAAAGAGAGTTTTTT+AGG + tig0018513:185828-185847 None:intergenic 25.0%
!! CTAAAAAACTCTCTTTTAAC+TGG - tig0018513:185826-185845 Msa1367540:three_prime_UTR 25.0%
! GTTAGTTAGTTAGTTAAAAG+AGG + tig0018513:185970-185989 None:intergenic 25.0%
!!! TAAAGAATGTTTGTTGATTC+AGG - tig0018513:185990-186009 Msa1367540:three_prime_UTR 25.0%
!!! TTTCAAGAGTTTTAAGAACT+CGG + tig0018513:186488-186507 None:intergenic 25.0%
! AGTTCTTAAAACTCTTGAAA+TGG - tig0018513:186488-186507 Msa1367540:intron 25.0%
! GAGTAATATAAGACATACAA+AGG + tig0018513:186586-186605 None:intergenic 25.0%
! TTGTATGTCTTATATTACTC+AGG - tig0018513:186586-186605 Msa1367540:CDS 25.0%
!! ATTTATTAATCGGGTTTGTT+TGG - tig0018513:186781-186800 Msa1367540:intron 25.0%
! ATTTGAACATACCTTCATAT+AGG + tig0018513:186937-186956 None:intergenic 25.0%
!!! AAATGGGTTTGATATTTTTC+AGG + tig0018513:187080-187099 None:intergenic 25.0%
! CTTGATATATTCACTGAAAT+GGG + tig0018513:187096-187115 None:intergenic 25.0%
!! GACTATTTACTATTGATGAT+TGG - tig0018513:187250-187269 Msa1367540:CDS 25.0%
! GAAATACTACTAATTCAAAC+AGG + tig0018513:187289-187308 None:intergenic 25.0%
!! CGTTAAATTTTTGTTGCATA+TGG - tig0018513:187557-187576 Msa1367540:intron 25.0%
!!! ATTATATCAGTTTTGGACTA+TGG - tig0018513:187590-187609 Msa1367540:CDS 25.0%
! AGAAATTATATTCTGGATTC+TGG + tig0018513:187657-187676 None:intergenic 25.0%
! AACAGCAAGAAATTATATTC+TGG + tig0018513:187664-187683 None:intergenic 25.0%
! TGTTATCATTATACTGTTTG+GGG - tig0018513:187695-187714 Msa1367540:CDS 25.0%
! AAAAGATCCAAAATTGATCT+AGG + tig0018513:187799-187818 None:intergenic 25.0%
!!! CAGTTAAAAGAGAGTTTTTT+AGG + tig0018513:185828-185847 None:intergenic 25.0%
!! CTAAAAAACTCTCTTTTAAC+TGG - tig0018513:185826-185845 Msa1367540:three_prime_UTR 25.0%
! GTTAGTTAGTTAGTTAAAAG+AGG + tig0018513:185970-185989 None:intergenic 25.0%
!!! TAAAGAATGTTTGTTGATTC+AGG - tig0018513:185990-186009 Msa1367540:three_prime_UTR 25.0%
!!! TTTCAAGAGTTTTAAGAACT+CGG + tig0018513:186488-186507 None:intergenic 25.0%
! AGTTCTTAAAACTCTTGAAA+TGG - tig0018513:186488-186507 Msa1367540:intron 25.0%
! GAGTAATATAAGACATACAA+AGG + tig0018513:186586-186605 None:intergenic 25.0%
! TTGTATGTCTTATATTACTC+AGG - tig0018513:186586-186605 Msa1367540:CDS 25.0%
!! ATTTATTAATCGGGTTTGTT+TGG - tig0018513:186781-186800 Msa1367540:intron 25.0%
! ATTTGAACATACCTTCATAT+AGG + tig0018513:186937-186956 None:intergenic 25.0%
!!! AAATGGGTTTGATATTTTTC+AGG + tig0018513:187080-187099 None:intergenic 25.0%
! CTTGATATATTCACTGAAAT+GGG + tig0018513:187096-187115 None:intergenic 25.0%
!! GACTATTTACTATTGATGAT+TGG - tig0018513:187250-187269 Msa1367540:CDS 25.0%
! GAAATACTACTAATTCAAAC+AGG + tig0018513:187289-187308 None:intergenic 25.0%
!! CGTTAAATTTTTGTTGCATA+TGG - tig0018513:187557-187576 Msa1367540:intron 25.0%
!!! ATTATATCAGTTTTGGACTA+TGG - tig0018513:187590-187609 Msa1367540:CDS 25.0%
! AGAAATTATATTCTGGATTC+TGG + tig0018513:187657-187676 None:intergenic 25.0%
! AACAGCAAGAAATTATATTC+TGG + tig0018513:187664-187683 None:intergenic 25.0%
! TGTTATCATTATACTGTTTG+GGG - tig0018513:187695-187714 Msa1367540:CDS 25.0%
! AAAAGATCCAAAATTGATCT+AGG + tig0018513:187799-187818 None:intergenic 25.0%
!!! AGTTTTTTAGGGTTTCTCTT+GGG + tig0018513:185816-185835 None:intergenic 30.0%
GTTAGTTAGTTAAAAGAGGA+TGG + tig0018513:185966-185985 None:intergenic 30.0%
AAATTCAAGAGAAGAAGAGA+GGG - tig0018513:186063-186082 Msa1367540:three_prime_UTR 30.0%
! CTACACTTTTCATTTCTATG+TGG - tig0018513:186552-186571 Msa1367540:CDS 30.0%
TATCAATGTCACAAGAATAG+AGG + tig0018513:186762-186781 None:intergenic 30.0%
GCTTGATATATTCACTGAAA+TGG + tig0018513:187097-187116 None:intergenic 30.0%
AATCGAGGAACTATACAAAA+AGG - tig0018513:187136-187155 Msa1367540:intron 30.0%
AGGAAATTCAAGCTAAACAA+TGG + tig0018513:187533-187552 None:intergenic 30.0%
GTTATCATTATACTGTTTGG+GGG - tig0018513:187696-187715 Msa1367540:CDS 30.0%
!!! AGTTTTTTAGGGTTTCTCTT+GGG + tig0018513:185816-185835 None:intergenic 30.0%
GTTAGTTAGTTAAAAGAGGA+TGG + tig0018513:185966-185985 None:intergenic 30.0%
AAATTCAAGAGAAGAAGAGA+GGG - tig0018513:186063-186082 Msa1367540:three_prime_UTR 30.0%
! CTACACTTTTCATTTCTATG+TGG - tig0018513:186552-186571 Msa1367540:CDS 30.0%
TATCAATGTCACAAGAATAG+AGG + tig0018513:186762-186781 None:intergenic 30.0%
GCTTGATATATTCACTGAAA+TGG + tig0018513:187097-187116 None:intergenic 30.0%
AATCGAGGAACTATACAAAA+AGG - tig0018513:187136-187155 Msa1367540:intron 30.0%
AGGAAATTCAAGCTAAACAA+TGG + tig0018513:187533-187552 None:intergenic 30.0%
GTTATCATTATACTGTTTGG+GGG - tig0018513:187696-187715 Msa1367540:CDS 30.0%
!!! GAGTTTTTTAGGGTTTCTCT+TGG + tig0018513:185817-185836 None:intergenic 35.0%
GAAATTCAAGAGAAGAAGAG+AGG - tig0018513:186062-186081 Msa1367540:three_prime_UTR 35.0%
TTGAGTAATCAAACGAACTC+TGG + tig0018513:186106-186125 None:intergenic 35.0%
ACTCAAGACGCTAACAAATA+CGG - tig0018513:186120-186139 Msa1367540:three_prime_UTR 35.0%
TTACCAATCGAACAACGTAA+CGG + tig0018513:186158-186177 None:intergenic 35.0%
!!! TGGTTTTGGTTACTGAAGTA+TGG + tig0018513:186208-186227 None:intergenic 35.0%
AAGAACAATATCACCAGCAA+TGG + tig0018513:186287-186306 None:intergenic 35.0%
GAAATGGATGATCAGTATGA+AGG - tig0018513:186504-186523 Msa1367540:intron 35.0%
TCTTATATTACTCAGGCAAC+CGG - tig0018513:186593-186612 Msa1367540:CDS 35.0%
TCTTAACAAGACCAACATCA+AGG + tig0018513:186670-186689 None:intergenic 35.0%
!! TTCACCGGAAGTACATTTTT+GGG - tig0018513:186898-186917 Msa1367540:CDS 35.0%
AAAAAAGTCTCAAACTCCAC+AGG + tig0018513:187009-187028 None:intergenic 35.0%
TTCAGTGAATATATCAAGCG+TGG - tig0018513:187098-187117 Msa1367540:CDS 35.0%
!! TTCTCAGGCTTTTTGATTGA+GGG + tig0018513:187185-187204 None:intergenic 35.0%
!! AACACAAGAGGTATCACATT+AGG - tig0018513:187219-187238 Msa1367540:CDS 35.0%
! TACTATTGATGATTGGCAAG+TGG - tig0018513:187257-187276 Msa1367540:CDS 35.0%
!! TTTTGGACTATGGATTATCC+TGG - tig0018513:187600-187619 Msa1367540:CDS 35.0%
AAATCGAAACAAGTCTATCC+AGG + tig0018513:187621-187640 None:intergenic 35.0%
ATTTGTATTTCCAACCTAGC+TGG - tig0018513:187829-187848 Msa1367540:CDS 35.0%
!!! GAGTTTTTTAGGGTTTCTCT+TGG + tig0018513:185817-185836 None:intergenic 35.0%
GAAATTCAAGAGAAGAAGAG+AGG - tig0018513:186062-186081 Msa1367540:three_prime_UTR 35.0%
TTGAGTAATCAAACGAACTC+TGG + tig0018513:186106-186125 None:intergenic 35.0%
ACTCAAGACGCTAACAAATA+CGG - tig0018513:186120-186139 Msa1367540:three_prime_UTR 35.0%
TTACCAATCGAACAACGTAA+CGG + tig0018513:186158-186177 None:intergenic 35.0%
!!! TGGTTTTGGTTACTGAAGTA+TGG + tig0018513:186208-186227 None:intergenic 35.0%
AAGAACAATATCACCAGCAA+TGG + tig0018513:186287-186306 None:intergenic 35.0%
GAAATGGATGATCAGTATGA+AGG - tig0018513:186504-186523 Msa1367540:intron 35.0%
TCTTATATTACTCAGGCAAC+CGG - tig0018513:186593-186612 Msa1367540:CDS 35.0%
TCTTAACAAGACCAACATCA+AGG + tig0018513:186670-186689 None:intergenic 35.0%
!! TTCACCGGAAGTACATTTTT+GGG - tig0018513:186898-186917 Msa1367540:CDS 35.0%
AAAAAAGTCTCAAACTCCAC+AGG + tig0018513:187009-187028 None:intergenic 35.0%
TTCAGTGAATATATCAAGCG+TGG - tig0018513:187098-187117 Msa1367540:CDS 35.0%
!! TTCTCAGGCTTTTTGATTGA+GGG + tig0018513:187185-187204 None:intergenic 35.0%
!! AACACAAGAGGTATCACATT+AGG - tig0018513:187219-187238 Msa1367540:CDS 35.0%
! TACTATTGATGATTGGCAAG+TGG - tig0018513:187257-187276 Msa1367540:CDS 35.0%
!! TTTTGGACTATGGATTATCC+TGG - tig0018513:187600-187619 Msa1367540:CDS 35.0%
AAATCGAAACAAGTCTATCC+AGG + tig0018513:187621-187640 None:intergenic 35.0%
ATTTGTATTTCCAACCTAGC+TGG - tig0018513:187829-187848 Msa1367540:CDS 35.0%
! GTTGATTCAGGCATTTGTGA+AGG - tig0018513:186002-186021 Msa1367540:three_prime_UTR 40.0%
TAATCAAACGAACTCTGGCT+CGG + tig0018513:186101-186120 None:intergenic 40.0%
CGAACAACGTAACGGTATTT+GGG + tig0018513:186150-186169 None:intergenic 40.0%
TCGAACAACGTAACGGTATT+TGG + tig0018513:186151-186170 None:intergenic 40.0%
ATACCGTTACGTTGTTCGAT+TGG - tig0018513:186152-186171 Msa1367540:three_prime_UTR 40.0%
CATAGTTAGTAAGGCCTACA+TGG + tig0018513:186348-186367 None:intergenic 40.0%
TACCTGCAGCATAGTTAGTA+AGG + tig0018513:186357-186376 None:intergenic 40.0%
ATGTTACCAGCTTATTGCAC+TGG - tig0018513:186447-186466 Msa1367540:intron 40.0%
!! TTATTGCACTGGTCTCCTTT+TGG - tig0018513:186458-186477 Msa1367540:intron 40.0%
TCAGTATGAAGGCAATGTTG+AGG - tig0018513:186515-186534 Msa1367540:CDS 40.0%
TTCCACAGAATAATCCTCTC+CGG + tig0018513:186615-186634 None:intergenic 40.0%
CAAGAATAGAGGACATAGGT+GGG + tig0018513:186751-186770 None:intergenic 40.0%
ACAAGAATAGAGGACATAGG+TGG + tig0018513:186752-186771 None:intergenic 40.0%
GTCACAAGAATAGAGGACAT+AGG + tig0018513:186755-186774 None:intergenic 40.0%
ATATTCCTCACAGCGACAAA+AGG - tig0018513:186832-186851 Msa1367540:CDS 40.0%
!!! AAGGTTTGCTGGTTTTGACA+AGG - tig0018513:186851-186870 Msa1367540:CDS 40.0%
GAAAAAAGAGCTTGATGCTG+AGG - tig0018513:186875-186894 Msa1367540:CDS 40.0%
!! GTTCACCGGAAGTACATTTT+TGG - tig0018513:186897-186916 Msa1367540:CDS 40.0%
!! TCACCGGAAGTACATTTTTG+GGG - tig0018513:186899-186918 Msa1367540:CDS 40.0%
ACATGTTGCTGCCTATATGA+AGG - tig0018513:186923-186942 Msa1367540:intron 40.0%
! TTTGTAAGGCATTCATCCTG+TGG - tig0018513:186990-187009 Msa1367540:intron 40.0%
TATCAAGCGTGGAATTGAAG+CGG - tig0018513:187109-187128 Msa1367540:CDS 40.0%
!! CTTCTCAGGCTTTTTGATTG+AGG + tig0018513:187186-187205 None:intergenic 40.0%
TGATACCTCTTGTGTTCCTT+TGG + tig0018513:187215-187234 None:intergenic 40.0%
CTTTGTCTTTCTTTCCTCGT+AGG + tig0018513:187424-187443 None:intergenic 40.0%
CGAGGAAAGAAAGACAAAGT+TGG - tig0018513:187425-187444 Msa1367540:CDS 40.0%
AGGATGACGATGAGTGAAAT+TGG - tig0018513:187493-187512 Msa1367540:intron 40.0%
GGATGACGATGAGTGAAATT+GGG - tig0018513:187494-187513 Msa1367540:intron 40.0%
ACGATGAGTGAAATTGGGTT+GGG - tig0018513:187499-187518 Msa1367540:intron 40.0%
AACTGTCGGAATTTGTGAGT+TGG - tig0018513:187773-187792 Msa1367540:intron 40.0%
!! GAGTTGGCCTAGATCAATTT+TGG - tig0018513:187789-187808 Msa1367540:intron 40.0%
! TTGTGGTGGAATGAGATTGT+AGG + tig0018513:187855-187874 None:intergenic 40.0%
TACAATCTCATTCCACCACA+AGG - tig0018513:187854-187873 Msa1367540:CDS 40.0%
! GTTGATTCAGGCATTTGTGA+AGG - tig0018513:186002-186021 Msa1367540:three_prime_UTR 40.0%
TAATCAAACGAACTCTGGCT+CGG + tig0018513:186101-186120 None:intergenic 40.0%
CGAACAACGTAACGGTATTT+GGG + tig0018513:186150-186169 None:intergenic 40.0%
TCGAACAACGTAACGGTATT+TGG + tig0018513:186151-186170 None:intergenic 40.0%
ATACCGTTACGTTGTTCGAT+TGG - tig0018513:186152-186171 Msa1367540:three_prime_UTR 40.0%
CATAGTTAGTAAGGCCTACA+TGG + tig0018513:186348-186367 None:intergenic 40.0%
TACCTGCAGCATAGTTAGTA+AGG + tig0018513:186357-186376 None:intergenic 40.0%
ATGTTACCAGCTTATTGCAC+TGG - tig0018513:186447-186466 Msa1367540:intron 40.0%
!! TTATTGCACTGGTCTCCTTT+TGG - tig0018513:186458-186477 Msa1367540:intron 40.0%
TCAGTATGAAGGCAATGTTG+AGG - tig0018513:186515-186534 Msa1367540:CDS 40.0%
TTCCACAGAATAATCCTCTC+CGG + tig0018513:186615-186634 None:intergenic 40.0%
CAAGAATAGAGGACATAGGT+GGG + tig0018513:186751-186770 None:intergenic 40.0%
ACAAGAATAGAGGACATAGG+TGG + tig0018513:186752-186771 None:intergenic 40.0%
GTCACAAGAATAGAGGACAT+AGG + tig0018513:186755-186774 None:intergenic 40.0%
ATATTCCTCACAGCGACAAA+AGG - tig0018513:186832-186851 Msa1367540:CDS 40.0%
!!! AAGGTTTGCTGGTTTTGACA+AGG - tig0018513:186851-186870 Msa1367540:CDS 40.0%
GAAAAAAGAGCTTGATGCTG+AGG - tig0018513:186875-186894 Msa1367540:CDS 40.0%
!! GTTCACCGGAAGTACATTTT+TGG - tig0018513:186897-186916 Msa1367540:CDS 40.0%
!! TCACCGGAAGTACATTTTTG+GGG - tig0018513:186899-186918 Msa1367540:CDS 40.0%
ACATGTTGCTGCCTATATGA+AGG - tig0018513:186923-186942 Msa1367540:intron 40.0%
! TTTGTAAGGCATTCATCCTG+TGG - tig0018513:186990-187009 Msa1367540:intron 40.0%
TATCAAGCGTGGAATTGAAG+CGG - tig0018513:187109-187128 Msa1367540:CDS 40.0%
!! CTTCTCAGGCTTTTTGATTG+AGG + tig0018513:187186-187205 None:intergenic 40.0%
TGATACCTCTTGTGTTCCTT+TGG + tig0018513:187215-187234 None:intergenic 40.0%
CTTTGTCTTTCTTTCCTCGT+AGG + tig0018513:187424-187443 None:intergenic 40.0%
CGAGGAAAGAAAGACAAAGT+TGG - tig0018513:187425-187444 Msa1367540:CDS 40.0%
AGGATGACGATGAGTGAAAT+TGG - tig0018513:187493-187512 Msa1367540:intron 40.0%
GGATGACGATGAGTGAAATT+GGG - tig0018513:187494-187513 Msa1367540:intron 40.0%
ACGATGAGTGAAATTGGGTT+GGG - tig0018513:187499-187518 Msa1367540:intron 40.0%
AACTGTCGGAATTTGTGAGT+TGG - tig0018513:187773-187792 Msa1367540:intron 40.0%
!! GAGTTGGCCTAGATCAATTT+TGG - tig0018513:187789-187808 Msa1367540:intron 40.0%
! TTGTGGTGGAATGAGATTGT+AGG + tig0018513:187855-187874 None:intergenic 40.0%
TACAATCTCATTCCACCACA+AGG - tig0018513:187854-187873 Msa1367540:CDS 40.0%
AGTGTCCACATAAAGTGACG+AGG - tig0018513:185773-185792 Msa1367540:three_prime_UTR 45.0%
GTACCATTCCGATTCCGAAT+GGG + tig0018513:185921-185940 None:intergenic 45.0%
ATGGAGTGTGGAAAGAGAAG+AGG + tig0018513:186189-186208 None:intergenic 45.0%
GGTTACTGAAGTATGGAGTG+TGG + tig0018513:186201-186220 None:intergenic 45.0%
ATTGTCTCTGCTACCATTGC+TGG - tig0018513:186271-186290 Msa1367540:CDS 45.0%
AGTTAGTAAGGCCTACATGG+AGG + tig0018513:186345-186364 None:intergenic 45.0%
AACCGGAGAGGATTATTCTG+TGG - tig0018513:186610-186629 Msa1367540:CDS 45.0%
! AATCGGGTTTGTTTGGCTTC+AGG - tig0018513:186788-186807 Msa1367540:intron 45.0%
! ATCGGGTTTGTTTGGCTTCA+GGG - tig0018513:186789-186808 Msa1367540:intron 45.0%
!! CACCGGAAGTACATTTTTGG+GGG - tig0018513:186900-186919 Msa1367540:CDS 45.0%
GTCCCCCAAAAATGTACTTC+CGG + tig0018513:186905-186924 None:intergenic 45.0%
AATTGAAGCGGATGGAATCG+AGG - tig0018513:187121-187140 Msa1367540:intron 45.0%
TACCTCTTGTGTTCCTTTGG+TGG + tig0018513:187212-187231 None:intergenic 45.0%
!! TTCTTCAGGTTGTACCTGCT+CGG + tig0018513:187396-187415 None:intergenic 45.0%
GTCATCCTCATCATCATCTC+CGG + tig0018513:187481-187500 None:intergenic 45.0%
GACGATGAGTGAAATTGGGT+TGG - tig0018513:187498-187517 Msa1367540:intron 45.0%
AATGAGATTGTAGGCCAGCT+AGG + tig0018513:187846-187865 None:intergenic 45.0%
TCAGAAATCACCTTGCCTTG+TGG + tig0018513:187872-187891 None:intergenic 45.0%
AGTGTCCACATAAAGTGACG+AGG - tig0018513:185773-185792 Msa1367540:three_prime_UTR 45.0%
GTACCATTCCGATTCCGAAT+GGG + tig0018513:185921-185940 None:intergenic 45.0%
ATGGAGTGTGGAAAGAGAAG+AGG + tig0018513:186189-186208 None:intergenic 45.0%
GGTTACTGAAGTATGGAGTG+TGG + tig0018513:186201-186220 None:intergenic 45.0%
ATTGTCTCTGCTACCATTGC+TGG - tig0018513:186271-186290 Msa1367540:CDS 45.0%
AGTTAGTAAGGCCTACATGG+AGG + tig0018513:186345-186364 None:intergenic 45.0%
AACCGGAGAGGATTATTCTG+TGG - tig0018513:186610-186629 Msa1367540:CDS 45.0%
! AATCGGGTTTGTTTGGCTTC+AGG - tig0018513:186788-186807 Msa1367540:intron 45.0%
! ATCGGGTTTGTTTGGCTTCA+GGG - tig0018513:186789-186808 Msa1367540:intron 45.0%
!! CACCGGAAGTACATTTTTGG+GGG - tig0018513:186900-186919 Msa1367540:CDS 45.0%
GTCCCCCAAAAATGTACTTC+CGG + tig0018513:186905-186924 None:intergenic 45.0%
AATTGAAGCGGATGGAATCG+AGG - tig0018513:187121-187140 Msa1367540:intron 45.0%
TACCTCTTGTGTTCCTTTGG+TGG + tig0018513:187212-187231 None:intergenic 45.0%
!! TTCTTCAGGTTGTACCTGCT+CGG + tig0018513:187396-187415 None:intergenic 45.0%
GTCATCCTCATCATCATCTC+CGG + tig0018513:187481-187500 None:intergenic 45.0%
GACGATGAGTGAAATTGGGT+TGG - tig0018513:187498-187517 Msa1367540:intron 45.0%
AATGAGATTGTAGGCCAGCT+AGG + tig0018513:187846-187865 None:intergenic 45.0%
TCAGAAATCACCTTGCCTTG+TGG + tig0018513:187872-187891 None:intergenic 45.0%
!!! CTGCTGCTTTTCTCCAATGC+AGG + tig0018513:185753-185772 None:intergenic 50.0%
CGTACCATTCCGATTCCGAA+TGG + tig0018513:185922-185941 None:intergenic 50.0%
GCACATGAGCTTCCTCACTT+TGG - tig0018513:186319-186338 Msa1367540:CDS 50.0%
GGCCTTACTAACTATGCTGC+AGG - tig0018513:186352-186371 Msa1367540:intron 50.0%
AGGAGACCAGTGCAATAAGC+TGG + tig0018513:186456-186475 None:intergenic 50.0%
TAAGAACTCGGCGAGCCAAA+AGG + tig0018513:186476-186495 None:intergenic 50.0%
TATTACTCAGGCAACCGGAG+AGG - tig0018513:186598-186617 Msa1367540:CDS 50.0%
! ACATCAAGGAGAGCACGGAA+TGG + tig0018513:186656-186675 None:intergenic 50.0%
TTCCGTGCTCTCCTTGATGT+TGG - tig0018513:186656-186675 Msa1367540:CDS 50.0%
GACCAACATCAAGGAGAGCA+CGG + tig0018513:186661-186680 None:intergenic 50.0%
!! GGTCTTGTTAAGACCACCAC+CGG - tig0018513:186677-186696 Msa1367540:intron 50.0%
TTAAGACCACCACCGGAAAC+CGG - tig0018513:186684-186703 Msa1367540:intron 50.0%
! TGTTTGGCTTCAGGGAGCTT+TGG - tig0018513:186797-186816 Msa1367540:CDS 50.0%
! GCAAACCTTTTGTCGCTGTG+AGG + tig0018513:186840-186859 None:intergenic 50.0%
CACAGCGACAAAAGGTTTGC+TGG - tig0018513:186840-186859 Msa1367540:CDS 50.0%
AGCTTGATGCTGAGGTTCAC+CGG - tig0018513:186883-186902 Msa1367540:CDS 50.0%
AAGCGTGGAATTGAAGCGGA+TGG - tig0018513:187113-187132 Msa1367540:intron 50.0%
GATTGAGGGATCTGCACGAA+TGG + tig0018513:187171-187190 None:intergenic 50.0%
AGCCACCAAAGGAACACAAG+AGG - tig0018513:187207-187226 Msa1367540:CDS 50.0%
CAAGCTCTCAATTCTGCAGC+CGG - tig0018513:187459-187478 Msa1367540:CDS 50.0%
AGATTGTAGGCCAGCTAGGT+TGG + tig0018513:187842-187861 None:intergenic 50.0%
TCTCATTCCACCACAAGGCA+AGG - tig0018513:187859-187878 Msa1367540:CDS 50.0%
GAAATCACCTTGCCTTGTGG+TGG + tig0018513:187869-187888 None:intergenic 50.0%
!!! CTGCTGCTTTTCTCCAATGC+AGG + tig0018513:185753-185772 None:intergenic 50.0%
CGTACCATTCCGATTCCGAA+TGG + tig0018513:185922-185941 None:intergenic 50.0%
GCACATGAGCTTCCTCACTT+TGG - tig0018513:186319-186338 Msa1367540:CDS 50.0%
GGCCTTACTAACTATGCTGC+AGG - tig0018513:186352-186371 Msa1367540:intron 50.0%
AGGAGACCAGTGCAATAAGC+TGG + tig0018513:186456-186475 None:intergenic 50.0%
TAAGAACTCGGCGAGCCAAA+AGG + tig0018513:186476-186495 None:intergenic 50.0%
TATTACTCAGGCAACCGGAG+AGG - tig0018513:186598-186617 Msa1367540:CDS 50.0%
! ACATCAAGGAGAGCACGGAA+TGG + tig0018513:186656-186675 None:intergenic 50.0%
TTCCGTGCTCTCCTTGATGT+TGG - tig0018513:186656-186675 Msa1367540:CDS 50.0%
GACCAACATCAAGGAGAGCA+CGG + tig0018513:186661-186680 None:intergenic 50.0%
!! GGTCTTGTTAAGACCACCAC+CGG - tig0018513:186677-186696 Msa1367540:intron 50.0%
TTAAGACCACCACCGGAAAC+CGG - tig0018513:186684-186703 Msa1367540:intron 50.0%
! TGTTTGGCTTCAGGGAGCTT+TGG - tig0018513:186797-186816 Msa1367540:CDS 50.0%
! GCAAACCTTTTGTCGCTGTG+AGG + tig0018513:186840-186859 None:intergenic 50.0%
CACAGCGACAAAAGGTTTGC+TGG - tig0018513:186840-186859 Msa1367540:CDS 50.0%
AGCTTGATGCTGAGGTTCAC+CGG - tig0018513:186883-186902 Msa1367540:CDS 50.0%
AAGCGTGGAATTGAAGCGGA+TGG - tig0018513:187113-187132 Msa1367540:intron 50.0%
GATTGAGGGATCTGCACGAA+TGG + tig0018513:187171-187190 None:intergenic 50.0%
AGCCACCAAAGGAACACAAG+AGG - tig0018513:187207-187226 Msa1367540:CDS 50.0%
CAAGCTCTCAATTCTGCAGC+CGG - tig0018513:187459-187478 Msa1367540:CDS 50.0%
AGATTGTAGGCCAGCTAGGT+TGG + tig0018513:187842-187861 None:intergenic 50.0%
TCTCATTCCACCACAAGGCA+AGG - tig0018513:187859-187878 Msa1367540:CDS 50.0%
GAAATCACCTTGCCTTGTGG+TGG + tig0018513:187869-187888 None:intergenic 50.0%
! ACGGGCCTCGTCACTTTATG+TGG + tig0018513:185781-185800 None:intergenic 55.0%
CATAAAGTGACGAGGCCCGT+AGG - tig0018513:185781-185800 Msa1367540:three_prime_UTR 55.0%
TCTTGGGCTGCCTTTGCCTA+CGG + tig0018513:185800-185819 None:intergenic 55.0%
CCAATCACCCACCACCCATT+CGG - tig0018513:185904-185923 Msa1367540:three_prime_UTR 55.0%
ACCCACCACCCATTCGGAAT+CGG - tig0018513:185910-185929 Msa1367540:three_prime_UTR 55.0%
TCCGATTCCGAATGGGTGGT+GGG + tig0018513:185914-185933 None:intergenic 55.0%
TTCCGATTCCGAATGGGTGG+TGG + tig0018513:185915-185934 None:intergenic 55.0%
CCATTCCGATTCCGAATGGG+TGG + tig0018513:185918-185937 None:intergenic 55.0%
CCACCCATTCGGAATCGGAA+TGG - tig0018513:185915-185934 Msa1367540:three_prime_UTR 55.0%
CCTACATGGAGGCCAAAGTG+AGG + tig0018513:186334-186353 None:intergenic 55.0%
CCTCACTTTGGCCTCCATGT+AGG - tig0018513:186331-186350 Msa1367540:intron 55.0%
TAAGACCACCACCGGAAACC+GGG - tig0018513:186685-186704 Msa1367540:intron 55.0%
TGCACCAAAGACCCGGTTTC+CGG + tig0018513:186699-186718 None:intergenic 55.0%
CCTTGAGTGCACCAAAGACC+CGG + tig0018513:186706-186725 None:intergenic 55.0%
!! TGGCTTCAGGGAGCTTTGGA+CGG - tig0018513:186801-186820 Msa1367540:CDS 55.0%
! TCCTTTGGTGGCTGCTTCTC+AGG + tig0018513:187200-187219 None:intergenic 55.0%
GCGTTGTTTGTCTTCCGAGC+AGG - tig0018513:187379-187398 Msa1367540:CDS 55.0%
CCTCGTAGGTGAGCTTCTTC+AGG + tig0018513:187410-187429 None:intergenic 55.0%
CCTGAAGAAGCTCACCTACG+AGG - tig0018513:187407-187426 Msa1367540:CDS 55.0%
! TGCAGCCGGAGATGATGATG+AGG - tig0018513:187473-187492 Msa1367540:CDS 55.0%
! ACGGGCCTCGTCACTTTATG+TGG + tig0018513:185781-185800 None:intergenic 55.0%
CATAAAGTGACGAGGCCCGT+AGG - tig0018513:185781-185800 Msa1367540:three_prime_UTR 55.0%
TCTTGGGCTGCCTTTGCCTA+CGG + tig0018513:185800-185819 None:intergenic 55.0%
CCAATCACCCACCACCCATT+CGG - tig0018513:185904-185923 Msa1367540:three_prime_UTR 55.0%
ACCCACCACCCATTCGGAAT+CGG - tig0018513:185910-185929 Msa1367540:three_prime_UTR 55.0%
TCCGATTCCGAATGGGTGGT+GGG + tig0018513:185914-185933 None:intergenic 55.0%
TTCCGATTCCGAATGGGTGG+TGG + tig0018513:185915-185934 None:intergenic 55.0%
CCATTCCGATTCCGAATGGG+TGG + tig0018513:185918-185937 None:intergenic 55.0%
CCACCCATTCGGAATCGGAA+TGG - tig0018513:185915-185934 Msa1367540:three_prime_UTR 55.0%
CCTACATGGAGGCCAAAGTG+AGG + tig0018513:186334-186353 None:intergenic 55.0%
CCTCACTTTGGCCTCCATGT+AGG - tig0018513:186331-186350 Msa1367540:intron 55.0%
TAAGACCACCACCGGAAACC+GGG - tig0018513:186685-186704 Msa1367540:intron 55.0%
TGCACCAAAGACCCGGTTTC+CGG + tig0018513:186699-186718 None:intergenic 55.0%
CCTTGAGTGCACCAAAGACC+CGG + tig0018513:186706-186725 None:intergenic 55.0%
!! TGGCTTCAGGGAGCTTTGGA+CGG - tig0018513:186801-186820 Msa1367540:CDS 55.0%
! TCCTTTGGTGGCTGCTTCTC+AGG + tig0018513:187200-187219 None:intergenic 55.0%
GCGTTGTTTGTCTTCCGAGC+AGG - tig0018513:187379-187398 Msa1367540:CDS 55.0%
CCTCGTAGGTGAGCTTCTTC+AGG + tig0018513:187410-187429 None:intergenic 55.0%
CCTGAAGAAGCTCACCTACG+AGG - tig0018513:187407-187426 Msa1367540:CDS 55.0%
! TGCAGCCGGAGATGATGATG+AGG - tig0018513:187473-187492 Msa1367540:CDS 55.0%
CTTGGGCTGCCTTTGCCTAC+GGG + tig0018513:185799-185818 None:intergenic 60.0%
TTCTCTGCACCAGACAGCCG+CGG - tig0018513:185864-185883 Msa1367540:three_prime_UTR 60.0%
!! CCGAATGGGTGGTGGGTGAT+TGG + tig0018513:185907-185926 None:intergenic 60.0%
! CTGTGGAACCAGCTGACTCC+AGG - tig0018513:186627-186646 Msa1367540:CDS 60.0%
! TGGAACCAGCTGACTCCAGG+AGG - tig0018513:186630-186649 Msa1367540:CDS 60.0%
AATGGCCTCCTGGAGTCAGC+TGG + tig0018513:186638-186657 None:intergenic 60.0%
AAAGACCCGGTTTCCGGTGG+TGG + tig0018513:186693-186712 None:intergenic 60.0%
ACCACCGGAAACCGGGTCTT+TGG - tig0018513:186692-186711 Msa1367540:intron 60.0%
ACCAAAGACCCGGTTTCCGG+TGG + tig0018513:186696-186715 None:intergenic 60.0%
! CCGGGTCTTTGGTGCACTCA+AGG - tig0018513:186703-186722 Msa1367540:intron 60.0%
!! GGCTTCAGGGAGCTTTGGAC+GGG - tig0018513:186802-186821 Msa1367540:CDS 60.0%
!! GCTTCAGGGAGCTTTGGACG+GGG - tig0018513:186803-186822 Msa1367540:CDS 60.0%
!! CTTCAGGGAGCTTTGGACGG+GGG - tig0018513:186804-186823 Msa1367540:CDS 60.0%
GCCTGAGAAGCAGCCACCAA+AGG - tig0018513:187196-187215 Msa1367540:intron 60.0%
CTTGGGCTGCCTTTGCCTAC+GGG + tig0018513:185799-185818 None:intergenic 60.0%
TTCTCTGCACCAGACAGCCG+CGG - tig0018513:185864-185883 Msa1367540:three_prime_UTR 60.0%
!! CCGAATGGGTGGTGGGTGAT+TGG + tig0018513:185907-185926 None:intergenic 60.0%
! CTGTGGAACCAGCTGACTCC+AGG - tig0018513:186627-186646 Msa1367540:CDS 60.0%
! TGGAACCAGCTGACTCCAGG+AGG - tig0018513:186630-186649 Msa1367540:CDS 60.0%
AATGGCCTCCTGGAGTCAGC+TGG + tig0018513:186638-186657 None:intergenic 60.0%
AAAGACCCGGTTTCCGGTGG+TGG + tig0018513:186693-186712 None:intergenic 60.0%
ACCACCGGAAACCGGGTCTT+TGG - tig0018513:186692-186711 Msa1367540:intron 60.0%
ACCAAAGACCCGGTTTCCGG+TGG + tig0018513:186696-186715 None:intergenic 60.0%
! CCGGGTCTTTGGTGCACTCA+AGG - tig0018513:186703-186722 Msa1367540:intron 60.0%
!! GGCTTCAGGGAGCTTTGGAC+GGG - tig0018513:186802-186821 Msa1367540:CDS 60.0%
!! GCTTCAGGGAGCTTTGGACG+GGG - tig0018513:186803-186822 Msa1367540:CDS 60.0%
!! CTTCAGGGAGCTTTGGACGG+GGG - tig0018513:186804-186823 Msa1367540:CDS 60.0%
GCCTGAGAAGCAGCCACCAA+AGG - tig0018513:187196-187215 Msa1367540:intron 60.0%
GTGACGAGGCCCGTAGGCAA+AGG - tig0018513:185787-185806 Msa1367540:three_prime_UTR 65.0%
! GAGAGCACGGAATGGCCTCC+TGG + tig0018513:186648-186667 None:intergenic 65.0%
GTGACGAGGCCCGTAGGCAA+AGG - tig0018513:185787-185806 Msa1367540:three_prime_UTR 65.0%
! GAGAGCACGGAATGGCCTCC+TGG + tig0018513:186648-186667 None:intergenic 65.0%
CACCAGACAGCCGCGGTCGA+AGG - tig0018513:185871-185890 Msa1367540:three_prime_UTR 70.0%
CACCTTCGACCGCGGCTGTC+TGG + tig0018513:185876-185895 None:intergenic 70.0%
GACAGCCGCGGTCGAAGGTG+CGG - tig0018513:185876-185895 Msa1367540:three_prime_UTR 70.0%
! ACAGCCGCGGTCGAAGGTGC+GGG - tig0018513:185877-185896 Msa1367540:three_prime_UTR 70.0%
ACTGCCCGCACCTTCGACCG+CGG + tig0018513:185884-185903 None:intergenic 70.0%
!! GGGAGCTTTGGACGGGGGTC+TGG - tig0018513:186809-186828 Msa1367540:CDS 70.0%
CACCAGACAGCCGCGGTCGA+AGG - tig0018513:185871-185890 Msa1367540:three_prime_UTR 70.0%
CACCTTCGACCGCGGCTGTC+TGG + tig0018513:185876-185895 None:intergenic 70.0%
GACAGCCGCGGTCGAAGGTG+CGG - tig0018513:185876-185895 Msa1367540:three_prime_UTR 70.0%
! ACAGCCGCGGTCGAAGGTGC+GGG - tig0018513:185877-185896 Msa1367540:three_prime_UTR 70.0%
ACTGCCCGCACCTTCGACCG+CGG + tig0018513:185884-185903 None:intergenic 70.0%
!! GGGAGCTTTGGACGGGGGTC+TGG - tig0018513:186809-186828 Msa1367540:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018513 gene 185740 187999 185740 ID=Msa1367540;Name=Msa1367540
tig0018513 mRNA 185740 187999 185740 ID=Msa1367540-mRNA-1;Parent=Msa1367540;Name=Msa1367540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=5|1|1|1|1|1|8|490|363
tig0018513 exon 185740 186338 185740 ID=Msa1367540-mRNA-1:exon:15610;Parent=Msa1367540-mRNA-1
tig0018513 exon 186511 186680 186511 ID=Msa1367540-mRNA-1:exon:15609;Parent=Msa1367540-mRNA-1
tig0018513 exon 186795 186929 186795 ID=Msa1367540-mRNA-1:exon:15608;Parent=Msa1367540-mRNA-1
tig0018513 exon 187015 187131 187015 ID=Msa1367540-mRNA-1:exon:15607;Parent=Msa1367540-mRNA-1
tig0018513 exon 187203 187282 187203 ID=Msa1367540-mRNA-1:exon:15606;Parent=Msa1367540-mRNA-1
tig0018513 exon 187366 187492 187366 ID=Msa1367540-mRNA-1:exon:15605;Parent=Msa1367540-mRNA-1
tig0018513 exon 187566 187727 187566 ID=Msa1367540-mRNA-1:exon:15604;Parent=Msa1367540-mRNA-1
tig0018513 exon 187803 187999 187803 ID=Msa1367540-mRNA-1:exon:15603;Parent=Msa1367540-mRNA-1
tig0018513 five_prime_UTR 187995 187999 187995 ID=Msa1367540-mRNA-1:five_prime_utr;Parent=Msa1367540-mRNA-1
tig0018513 CDS 187803 187994 187803 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 187566 187727 187566 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 187366 187492 187366 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 187203 187282 187203 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 187015 187131 187015 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 186795 186929 186795 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 186511 186680 186511 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 CDS 186230 186338 186230 ID=Msa1367540-mRNA-1:cds;Parent=Msa1367540-mRNA-1
tig0018513 three_prime_UTR 185740 186229 185740 ID=Msa1367540-mRNA-1:three_prime_utr;Parent=Msa1367540-mRNA-1
Gene Sequence

>Msa1367540

ATGTGCCTGCATTGGAGAAAAGCAGCAGAGTGTCCACATAAAGTGACGAGGCCCGTAGGCAAAGGCAGCCCAAGAGAAACCCTAAAAAACTCTCTTTTAACTGGAAAACGAAATTCTCTTTCTCTGCACCAGACAGCCGCGGTCGAAGGTGCGGGCAGTCCAATCACCCACCACCCATTCGGAATCGGAATGGCATTTGTGAAGGCTCAGAAATCAAATGCGTACTTCAAGCGATTTCAAGTGAAATTCAAGAGAAGAAGAGAGGGTAAGACTGATTACCGAGCCAGAGTTCGTTTGATTACTCAAGACGCTAACAAATACGGCACTCCCAAATACCGTTACGTTGTTCGATTGACAAACAAAGACATTGTCTGTCAAATTGTCTCTGCTACCATTGCTGGTGATATTGTTCTTGCTGCTGCTTACGCACATGAGCTTCCTCACTTTGGCCTCCATGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGTCTCCTTTTGGCTCGCCGAGTTCTTAAAACTCTTGAAATGGATGATCAGTATGAAGGCAATGTTGAGGCAACCGGAGAGGATTATTCTGTGGAACCAGCTGACTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACCACCGGAAACCGGGTCTTTGGTGCACTCAAGGGAGCTTTGGACGGGGGTCTGGATATTCCTCACAGCGACAAAAGGTTTGCTGGTTTTGACAAGGAGAAAAAAGAGCTTGATGCTGAGGTTCACCGGAAGTACATTTTTGGGGGACATGTTGCTGCCTATATGAAGACATTGATGGAAGACGAACCTGAAAAATATCAAACCCATTTCAGTGAATATATCAAGCGTGGAATTGAAGCGGATGGAATCGAGGAACTATACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCCTCAATCAAAAAGCCTGAGAAGCAGCCACCAAAGGAACACAAGAGGTACAACCTGAAGAAGCTCACCTACGAGGAAAGAAAGACAAAGTTGGTCTCTCGCTTGCAAGCTCTCAATTCTGCAGCCGGAGATGATGATGAGGATGACGATGAGTGA

Protein sequence

>Msa1367540

MCLHWRKAAECPHKVTRPVGKGSPRETLKNSLLTGKRNSLSLHQTAAVEGAGSPITHHPFGIGMAFVKAQKSNAYFKRFQVKFKRRREGKTDYRARVRLITQDANKYGTPKYRYVVRLTNKDIVCQIVSATIAGDIVLAAAYAHELPHFGLHVGLTNYAAAYCTGLLLARRVLKTLEMDDQYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVAAYMKTLMEDEPEKYQTHFSEYIKRGIEADGIEELYKKVHAAIRADPSIKKPEKQPPKEHKRYNLKKLTYEERKTKLVSRLQALNSAAGDDDEDDDE*