Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341780 | XP_013444706.1 | 92.698 | 315 | 8 | 1 | 1 | 315 | 1 | 300 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341780 | sp|Q6UNT2|RL5_CUCSA | 80.392 | 306 | 45 | 1 | 1 | 306 | 1 | 291 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341780 | B7FJX5 | 92.698 | 315 | 8 | 1 | 1 | 315 | 1 | 300 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001390 | Msa1341780 | 0.801099 | 1.056376e-48 | -8.615850e-47 |
| Msa0001760 | Msa1341780 | 0.810342 | 1.208885e-50 | -8.615850e-47 |
| Msa0037480 | Msa1341780 | 0.827289 | 1.698160e-54 | -8.615850e-47 |
| Msa0040220 | Msa1341780 | 0.866555 | 2.616418e-65 | -8.615850e-47 |
| Msa0071760 | Msa1341780 | 0.822034 | 2.939922e-53 | -8.615850e-47 |
| Msa0086160 | Msa1341780 | 0.848368 | 6.409885e-60 | -8.615850e-47 |
| Msa0087910 | Msa1341780 | 0.864616 | 1.069744e-64 | -8.615850e-47 |
| Msa0089540 | Msa1341780 | 0.813400 | 2.609114e-51 | -8.615850e-47 |
| Msa0114600 | Msa1341780 | 0.879008 | 1.769144e-69 | -8.615850e-47 |
| Msa0602900 | Msa1341780 | 0.885868 | 5.608484e-72 | -8.615850e-47 |
| Msa0605890 | Msa1341780 | 0.863899 | 1.789987e-64 | -8.615850e-47 |
| Msa0619230 | Msa1341780 | 0.809661 | 1.694773e-50 | -8.615850e-47 |
| Msa0622230 | Msa1341780 | 0.808127 | 3.608232e-50 | -8.615850e-47 |
| Msa0643960 | Msa1341780 | 0.890000 | 1.462162e-73 | -8.615850e-47 |
| Msa0648620 | Msa1341780 | 0.852767 | 3.719246e-61 | -8.615850e-47 |
| Msa0648670 | Msa1341780 | 0.855185 | 7.473944e-62 | -8.615850e-47 |
| Msa0653060 | Msa1341780 | 0.827112 | 1.872846e-54 | -8.615850e-47 |
| Msa0663400 | Msa1341780 | 0.858327 | 8.887130e-63 | -8.615850e-47 |
| Msa0686550 | Msa1341780 | 0.810166 | 1.319507e-50 | -8.615850e-47 |
| Msa0694400 | Msa1341780 | 0.861464 | 1.007698e-63 | -8.615850e-47 |
| Msa0704860 | Msa1341780 | 0.810064 | 1.388017e-50 | -8.615850e-47 |
| Msa0708630 | Msa1341780 | 0.895082 | 1.342929e-75 | -8.615850e-47 |
| Msa0715970 | Msa1341780 | 0.819264 | 1.272327e-52 | -8.615850e-47 |
| Msa0718560 | Msa1341780 | 0.858768 | 6.565229e-63 | -8.615850e-47 |
| Msa0728870 | Msa1341780 | 0.816139 | 6.450950e-52 | -8.615850e-47 |
| Msa0741510 | Msa1341780 | 0.816350 | 5.787210e-52 | -8.615850e-47 |
| Msa0748350 | Msa1341780 | 0.834745 | 2.508749e-56 | -8.615850e-47 |
| Msa0749000 | Msa1341780 | 0.814180 | 1.756976e-51 | -8.615850e-47 |
| Msa0790450 | Msa1341780 | 0.916192 | 2.393487e-85 | -8.615850e-47 |
| Msa0796490 | Msa1341780 | 0.840143 | 1.038098e-57 | -8.615850e-47 |
| Msa0798590 | Msa1341780 | 0.839788 | 1.284755e-57 | -8.615850e-47 |
| Msa0812240 | Msa1341780 | 0.831719 | 1.423053e-55 | -8.615850e-47 |
| Msa0834220 | Msa1341780 | 0.808120 | 3.619392e-50 | -8.615850e-47 |
| Msa0839570 | Msa1341780 | 0.807457 | 5.008545e-50 | -8.615850e-47 |
| Msa0128330 | Msa1341780 | 0.831451 | 1.657324e-55 | -8.615850e-47 |
| Msa0129130 | Msa1341780 | 0.811278 | 7.584083e-51 | -8.615850e-47 |
| Msa0132460 | Msa1341780 | 0.894951 | 1.520052e-75 | -8.615850e-47 |
| Msa0134580 | Msa1341780 | 0.870213 | 1.729355e-66 | -8.615850e-47 |
| Msa0136400 | Msa1341780 | 0.820025 | 8.529566e-53 | -8.615850e-47 |
| Msa0167860 | Msa1341780 | 0.843622 | 1.251176e-58 | -8.615850e-47 |
| Msa0174580 | Msa1341780 | 0.821539 | 3.826972e-53 | -8.615850e-47 |
| Msa0182050 | Msa1341780 | 0.891648 | 3.279750e-74 | -8.615850e-47 |
| Msa0182100 | Msa1341780 | 0.884426 | 1.937437e-71 | -8.615850e-47 |
| Msa0187810 | Msa1341780 | 0.815042 | 1.131835e-51 | -8.615850e-47 |
| Msa0188740 | Msa1341780 | 0.885888 | 5.511514e-72 | -8.615850e-47 |
| Msa0191550 | Msa1341780 | 0.809094 | 2.242371e-50 | -8.615850e-47 |
| Msa0192300 | Msa1341780 | 0.845251 | 4.564443e-59 | -8.615850e-47 |
| Msa0192490 | Msa1341780 | 0.829398 | 5.264806e-55 | -8.615850e-47 |
| Msa0194940 | Msa1341780 | 0.862534 | 4.734421e-64 | -8.615850e-47 |
| Msa0223090 | Msa1341780 | 0.804918 | 1.715426e-49 | -8.615850e-47 |
| Msa0223240 | Msa1341780 | 0.828129 | 1.066991e-54 | -8.615850e-47 |
| Msa0223370 | Msa1341780 | 0.808876 | 2.496463e-50 | -8.615850e-47 |
| Msa0223950 | Msa1341780 | 0.829045 | 6.411160e-55 | -8.615850e-47 |
| Msa0234850 | Msa1341780 | 0.818628 | 1.774918e-52 | -8.615850e-47 |
| Msa0234900 | Msa1341780 | 0.839860 | 1.230624e-57 | -8.615850e-47 |
| Msa0237180 | Msa1341780 | 0.803163 | 3.973915e-49 | -8.615850e-47 |
| Msa1235950 | Msa1341780 | 0.842347 | 2.732731e-58 | -8.615850e-47 |
| Msa1235980 | Msa1341780 | 0.841359 | 4.985433e-58 | -8.615850e-47 |
| Msa1237040 | Msa1341780 | 0.878125 | 3.617664e-69 | -8.615850e-47 |
| Msa1255830 | Msa1341780 | 0.875260 | 3.545572e-68 | -8.615850e-47 |
| Msa1255850 | Msa1341780 | 0.865866 | 4.326544e-65 | -8.615850e-47 |
| Msa1278130 | Msa1341780 | 0.843972 | 1.008290e-58 | -8.615850e-47 |
| Msa1284060 | Msa1341780 | 0.827933 | 1.189763e-54 | -8.615850e-47 |
| Msa1296090 | Msa1341780 | 0.818465 | 1.932621e-52 | -8.615850e-47 |
| Msa1299690 | Msa1341780 | 0.807088 | 5.996661e-50 | -8.615850e-47 |
| Msa1316100 | Msa1341780 | 0.802929 | 4.442803e-49 | -8.615850e-47 |
| Msa1317390 | Msa1341780 | 0.848874 | 4.640524e-60 | -8.615850e-47 |
| Msa1332230 | Msa1341780 | 0.823491 | 1.346214e-53 | -8.615850e-47 |
| Msa1333370 | Msa1341780 | 0.825152 | 5.477313e-54 | -8.615850e-47 |
| Msa1341130 | Msa1341780 | 0.819334 | 1.226354e-52 | -8.615850e-47 |
| Msa1341780 | Msa1344160 | 0.818512 | 1.885630e-52 | -8.615850e-47 |
| Msa1341780 | Msa1344190 | 0.814656 | 1.378797e-51 | -8.615850e-47 |
| Msa1341780 | Msa1351020 | 0.834665 | 2.628646e-56 | -8.615850e-47 |
| Msa1341780 | Msa1351910 | 0.843398 | 1.436195e-58 | -8.615850e-47 |
| Msa1341780 | Msa1353300 | 0.860356 | 2.186292e-63 | -8.615850e-47 |
| Msa1341780 | Msa1364810 | 0.805180 | 1.512051e-49 | -8.615850e-47 |
| Msa1341780 | Msa1367540 | 0.902720 | 7.266670e-79 | -8.615850e-47 |
| Msa1341780 | Msa1371410 | 0.886785 | 2.527844e-72 | -8.615850e-47 |
| Msa1341780 | Msa1385480 | 0.874281 | 7.634326e-68 | -8.615850e-47 |
| Msa1341780 | Msa1390760 | 0.812835 | 3.471796e-51 | -8.615850e-47 |
| Msa1341780 | Msa1403520 | 0.851902 | 6.558261e-61 | -8.615850e-47 |
| Msa1341780 | Msa1407550 | 0.805552 | 1.263110e-49 | -8.615850e-47 |
| Msa1341780 | Msa1415620 | 0.891910 | 2.580150e-74 | -8.615850e-47 |
| Msa1341780 | Msa1421510 | 0.812329 | 4.477635e-51 | -8.615850e-47 |
| Msa1341780 | Msa1424570 | 0.882462 | 1.020589e-70 | -8.615850e-47 |
| Msa1341780 | Msa1433590 | 0.836422 | 9.447262e-57 | -8.615850e-47 |
| Msa1341780 | Msa1450560 | 0.915943 | 3.226250e-85 | -8.615850e-47 |
| Msa1341780 | Msa1463570 | 0.826622 | 2.452264e-54 | -8.615850e-47 |
| Msa1341780 | Msa1465700 | 0.826910 | 2.092651e-54 | -8.615850e-47 |
| Msa0371490 | Msa1341780 | 0.832723 | 8.034448e-56 | -8.615850e-47 |
| Msa0373830 | Msa1341780 | 0.822244 | 2.627633e-53 | -8.615850e-47 |
| Msa0377370 | Msa1341780 | 0.861268 | 1.155733e-63 | -8.615850e-47 |
| Msa0382950 | Msa1341780 | 0.845618 | 3.629020e-59 | -8.615850e-47 |
| Msa0382960 | Msa1341780 | 0.805406 | 1.355433e-49 | -8.615850e-47 |
| Msa0388250 | Msa1341780 | 0.803755 | 2.995912e-49 | -8.615850e-47 |
| Msa0419710 | Msa1341780 | 0.827729 | 1.332036e-54 | -8.615850e-47 |
| Msa0426090 | Msa1341780 | 0.856929 | 2.306311e-62 | -8.615850e-47 |
| Msa0426250 | Msa1341780 | 0.894733 | 1.867257e-75 | -8.615850e-47 |
| Msa0432750 | Msa1341780 | 0.892403 | 1.638871e-74 | -8.615850e-47 |
| Msa0433060 | Msa1341780 | 0.881261 | 2.780400e-70 | -8.615850e-47 |
| Msa0450150 | Msa1341780 | 0.856605 | 2.874425e-62 | -8.615850e-47 |
| Msa0472480 | Msa1341780 | 0.846933 | 1.590566e-59 | -8.615850e-47 |
| Msa0475810 | Msa1341780 | 0.844062 | 9.541337e-59 | -8.615850e-47 |
| Msa0479980 | Msa1341780 | 0.891347 | 4.317533e-74 | -8.615850e-47 |
| Msa1004780 | Msa1341780 | 0.861987 | 6.968141e-64 | -8.615850e-47 |
| Msa1019110 | Msa1341780 | 0.828998 | 6.580022e-55 | -8.615850e-47 |
| Msa1022730 | Msa1341780 | 0.819076 | 1.403835e-52 | -8.615850e-47 |
| Msa1025200 | Msa1341780 | 0.870496 | 1.397163e-66 | -8.615850e-47 |
| Msa1025220 | Msa1341780 | 0.862840 | 3.809860e-64 | -8.615850e-47 |
| Msa1040160 | Msa1341780 | 0.802181 | 6.337411e-49 | -8.615850e-47 |
| Msa1047020 | Msa1341780 | 0.855230 | 7.250401e-62 | -8.615850e-47 |
| Msa1050100 | Msa1341780 | 0.869037 | 4.178376e-66 | -8.615850e-47 |
| Msa1068660 | Msa1341780 | 0.825608 | 4.272273e-54 | -8.615850e-47 |
| Msa1070810 | Msa1341780 | 0.854553 | 1.140195e-61 | -8.615850e-47 |
| Msa1079910 | Msa1341780 | 0.807644 | 4.569625e-50 | -8.615850e-47 |
| Msa1079920 | Msa1341780 | 0.811092 | 8.323882e-51 | -8.615850e-47 |
| Msa1082050 | Msa1341780 | 0.820137 | 8.040200e-53 | -8.615850e-47 |
| Msa1083370 | Msa1341780 | 0.816691 | 4.853226e-52 | -8.615850e-47 |
| Msa1085570 | Msa1341780 | -0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa1085850 | Msa1341780 | 0.889942 | 1.540411e-73 | -8.615850e-47 |
| Msa1106870 | Msa1341780 | 0.834051 | 3.746756e-56 | -8.615850e-47 |
| Msa0265200 | Msa1341780 | 0.842477 | 2.525020e-58 | -8.615850e-47 |
| Msa0270160 | Msa1341780 | 0.891476 | 3.835519e-74 | -8.615850e-47 |
| Msa0277600 | Msa1341780 | 0.888597 | 5.125843e-73 | -8.615850e-47 |
| Msa0281330 | Msa1341780 | 0.857436 | 1.634694e-62 | -8.615850e-47 |
| Msa0281370 | Msa1341780 | 0.826487 | 2.640604e-54 | -8.615850e-47 |
| Msa0301250 | Msa1341780 | 0.844643 | 6.656205e-59 | -8.615850e-47 |
| Msa0313060 | Msa1341780 | 0.869581 | 2.782142e-66 | -8.615850e-47 |
| Msa0315430 | Msa1341780 | 0.862440 | 5.062031e-64 | -8.615850e-47 |
| Msa0339880 | Msa1341780 | 0.809429 | 1.901047e-50 | -8.615850e-47 |
| Msa0340560 | Msa1341780 | 0.845352 | 4.284340e-59 | -8.615850e-47 |
| Msa1116940 | Msa1341780 | 0.872374 | 3.339256e-67 | -8.615850e-47 |
| Msa1118790 | Msa1341780 | 0.825111 | 5.602592e-54 | -8.615850e-47 |
| Msa1124850 | Msa1341780 | 0.815410 | 9.377081e-52 | -8.615850e-47 |
| Msa1126690 | Msa1341780 | 0.857499 | 1.566044e-62 | -8.615850e-47 |
| Msa1136880 | Msa1341780 | 0.887247 | 1.687103e-72 | -8.615850e-47 |
| Msa1136980 | Msa1341780 | 0.803387 | 3.571103e-49 | -8.615850e-47 |
| Msa1158630 | Msa1341780 | 0.860402 | 2.118305e-63 | -8.615850e-47 |
| Msa1165210 | Msa1341780 | 0.817299 | 3.543223e-52 | -8.615850e-47 |
| Msa1165640 | Msa1341780 | 0.802057 | 6.718894e-49 | -8.615850e-47 |
| Msa1208330 | Msa1341780 | 0.806114 | 9.625101e-50 | -8.615850e-47 |
| Msa1211820 | Msa1341780 | 0.814070 | 1.857594e-51 | -8.615850e-47 |
| Msa1218110 | Msa1341780 | 0.800309 | 1.530840e-48 | -8.615850e-47 |
| Msa1219760 | Msa1341780 | 0.845492 | 3.925796e-59 | -8.615850e-47 |
| Msa0521730 | Msa1341780 | 0.834436 | 3.001440e-56 | -8.615850e-47 |
| Msa0524680 | Msa1341780 | 0.879368 | 1.319374e-69 | -8.615850e-47 |
| Msa0529900 | Msa1341780 | 0.814022 | 1.903309e-51 | -8.615850e-47 |
| Msa0547920 | Msa1341780 | 0.891418 | 4.043828e-74 | -8.615850e-47 |
| Msa0550490 | Msa1341780 | 0.827184 | 1.800187e-54 | -8.615850e-47 |
| Msa0554210 | Msa1341780 | 0.869726 | 2.495059e-66 | -8.615850e-47 |
| Msa0560740 | Msa1341780 | 0.810162 | 1.321910e-50 | -8.615850e-47 |
| Msa0564740 | Msa1341780 | 0.805894 | 1.070942e-49 | -8.615850e-47 |
| Msa0568380 | Msa1341780 | 0.823885 | 1.088451e-53 | -8.615850e-47 |
| Msa0573550 | Msa1341780 | 0.856044 | 4.197076e-62 | -8.615850e-47 |
| Msa0574780 | Msa1341780 | 0.817366 | 3.422746e-52 | -8.615850e-47 |
| Msa0575960 | Msa1341780 | -0.804351 | 2.252334e-49 | -8.615850e-47 |
| Msa0585570 | Msa1341780 | 0.854383 | 1.276908e-61 | -8.615850e-47 |
| Msa0587830 | Msa1341780 | 0.815471 | 9.091122e-52 | -8.615850e-47 |
| Msa0587850 | Msa1341780 | 0.806920 | 6.506535e-50 | -8.615850e-47 |
| Msa0597240 | Msa1341780 | 0.808680 | 2.750113e-50 | -8.615850e-47 |
| Msa0865790 | Msa1341780 | 0.807924 | 3.985231e-50 | -8.615850e-47 |
| Msa0927910 | Msa1341780 | 0.806071 | 9.826913e-50 | -8.615850e-47 |
| Msa0929700 | Msa1341780 | 0.862073 | 6.559421e-64 | -8.615850e-47 |
| Msa0930100 | Msa1341780 | 0.872096 | 4.134680e-67 | -8.615850e-47 |
| Msa0930890 | Msa1341780 | 0.857193 | 1.928743e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341780 | MtrunA17_Chr8g0347691 | 92.698 | 315 | 8 | 1 | 1 | 315 | 1 | 300 | 0.0 | 587 |
| Msa1341780 | MtrunA17_Chr3g0145691 | 85.574 | 305 | 29 | 1 | 1 | 305 | 1 | 290 | 0.0 | 530 |
| Msa1341780 | MtrunA17_Chr4g0006821 | 52.258 | 155 | 33 | 1 | 142 | 296 | 11 | 124 | 9.33e-44 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341780 | AT3G25520.3 | 80.000 | 305 | 46 | 1 | 1 | 305 | 1 | 290 | 0.0 | 503 |
| Msa1341780 | AT3G25520.1 | 80.000 | 305 | 46 | 1 | 1 | 305 | 1 | 290 | 0.0 | 503 |
| Msa1341780 | AT5G39740.2 | 79.344 | 305 | 48 | 1 | 1 | 305 | 1 | 290 | 0.0 | 502 |
| Msa1341780 | AT5G39740.1 | 79.344 | 305 | 48 | 1 | 1 | 305 | 1 | 290 | 0.0 | 502 |
| Msa1341780 | AT3G25520.2 | 81.461 | 178 | 33 | 0 | 128 | 305 | 2 | 179 | 1.29e-105 | 306 |
Find 107 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCACTGGTTCAACTTTC+TGG | -0.059970 | tig0004863:+4937 | Msa1341780:three_prime_UTR |
| GTTTATTGAGGTTAAAATTT+TGG | 0.119515 | tig0004863:+4898 | Msa1341780:three_prime_UTR |
| AAATACCTCTTGTGTTGTTT+TGG | 0.227809 | tig0004863:-4574 | None:intergenic |
| TTCTTTGATGTGTTTCTTGT+TGG | 0.290575 | tig0004863:+5032 | Msa1341780:three_prime_UTR |
| GTTCACCGCAAGTATATCTT+TGG | 0.291930 | tig0004863:+4273 | Msa1341780:CDS |
| CTCTCTCATTTAATGAAATC+AGG | 0.292345 | tig0004863:+5170 | Msa1341780:three_prime_UTR |
| TGTTCTTATCCTGGTTAATC+AGG | 0.320790 | tig0004863:-2643 | None:intergenic |
| ATATATGTTGTGTAACAATA+TGG | 0.321619 | tig0004863:+5110 | Msa1341780:three_prime_UTR |
| TTCTCTGATTTCTTAATTGT+AGG | 0.339582 | tig0004863:-4544 | None:intergenic |
| TTTCACTGGTTCAACTTTCT+GGG | 0.341276 | tig0004863:+4938 | Msa1341780:three_prime_UTR |
| TTGTGCCACTATGTCCTTGT+TGG | 0.354967 | tig0004863:-3605 | None:intergenic |
| GGGAAGAGTGAGAAGGAGCT+AGG | 0.370001 | tig0004863:-2135 | None:intergenic |
| TGTTGTACTTGTTCTTATCC+TGG | 0.370099 | tig0004863:-2652 | None:intergenic |
| CCGTGTCTTTGGTGCCTTGA+AGG | 0.376067 | tig0004863:+4076 | Msa1341780:CDS |
| ACTACTGGAAACCGTGTCTT+TGG | 0.377680 | tig0004863:+4065 | Msa1341780:CDS |
| TTCACCGCAAGTATATCTTT+GGG | 0.381172 | tig0004863:+4274 | Msa1341780:CDS |
| GAGAGCACGGAATGGCCTCC+TGG | 0.398347 | tig0004863:-4018 | None:intergenic |
| TTTGAATTAGGTTTATGTTA+AGG | 0.401148 | tig0004863:+2431 | Msa1341780:intron |
| CTTAGCTTTCCGCTCCTCAT+AGG | 0.404551 | tig0004863:-4711 | None:intergenic |
| ATAGTGTCCGCTAGTATTGC+TGG | 0.407211 | tig0004863:+3628 | Msa1341780:CDS |
| GAATATCCAAACCACCATCT+AGG | 0.409965 | tig0004863:-4191 | None:intergenic |
| TCGGACAACAAATCGGTACT+TGG | 0.416359 | tig0004863:-2678 | None:intergenic |
| CACAGCGACAAAAGGTTTGC+TGG | 0.419313 | tig0004863:+4216 | Msa1341780:CDS |
| TGTAACAATATGGAGAGTTC+CGG | 0.429695 | tig0004863:+5120 | Msa1341780:three_prime_UTR |
| TTCTTCTCTTGAACTTGACT+TGG | 0.430059 | tig0004863:-2485 | None:intergenic |
| GCATCATACTGATGCATAAC+CGG | 0.433592 | tig0004863:-5139 | None:intergenic |
| TGTATTCACTAAAGTGAGTC+TGG | 0.437754 | tig0004863:-4450 | None:intergenic |
| TGAGATGGATGAGGAGTATG+AGG | 0.439950 | tig0004863:+3866 | Msa1341780:CDS |
| TTATTGCACTGGACTCCTCT+TGG | 0.442461 | tig0004863:+3821 | Msa1341780:CDS |
| GCTGGATCCGCAAGAGTTGA+TGG | 0.445523 | tig0004863:-2156 | None:intergenic |
| GGTTTACAGGGAGCCCTAGA+TGG | 0.454096 | tig0004863:+4177 | Msa1341780:intron |
| GGAAGAGTGAGAAGGAGCTA+GGG | 0.456723 | tig0004863:-2134 | None:intergenic |
| GTAACGCTTGAAGTAAGCCT+TGG | 0.458552 | tig0004863:-2463 | None:intergenic |
| ACCATTGTTGCAGACGCAGC+TGG | 0.464802 | tig0004863:-2174 | None:intergenic |
| GGTCTTGTTAAGACCACTAC+TGG | 0.466788 | tig0004863:+4050 | Msa1341780:CDS |
| GGGAGCCCTAGATGGTGGTT+TGG | 0.466900 | tig0004863:+4185 | Msa1341780:intron |
| TCCAGCTGCGTCTGCAACAA+TGG | 0.469572 | tig0004863:+2173 | Msa1341780:exon |
| AATGGCCTCCTGGACTCAGC+TGG | 0.470728 | tig0004863:-4008 | None:intergenic |
| TTCCGTGCTCTCCTTGATGT+TGG | 0.475927 | tig0004863:+4029 | Msa1341780:CDS |
| GTTGCCTGTACTGTTTATTG+AGG | 0.481118 | tig0004863:+4886 | Msa1341780:three_prime_UTR |
| CATAACTATAAGCTGACAAA+AGG | 0.482215 | tig0004863:-2708 | None:intergenic |
| AAGTGAGTCTGGAATTTCTC+AGG | 0.489225 | tig0004863:-4439 | None:intergenic |
| CCACACTTTGGTCTTTCAGT+AGG | 0.491595 | tig0004863:+3688 | Msa1341780:CDS |
| ATTACAAGTTGGGCTTTCAC+TGG | 0.495721 | tig0004863:+4924 | Msa1341780:three_prime_UTR |
| AATTAAGAAATCAGAGAAGC+AGG | 0.500284 | tig0004863:+4549 | Msa1341780:CDS |
| TACCTGCAGCATAATTTGTA+AGG | 0.500398 | tig0004863:-3711 | None:intergenic |
| GTCAAGTTCAAGAGAAGAAG+AGG | 0.501877 | tig0004863:+2489 | Msa1341780:CDS |
| GGCCTTACAAATTATGCTGC+AGG | 0.502530 | tig0004863:+3709 | Msa1341780:CDS |
| AGTTCTAGATATCCATCACT+TGG | 0.507334 | tig0004863:-4819 | None:intergenic |
| TGAGGAGCGGAAAGCTAAGT+TGG | 0.510748 | tig0004863:+4715 | Msa1341780:CDS |
| CAGTTGAGCCAGCTGAGTCC+AGG | 0.512028 | tig0004863:+4000 | Msa1341780:CDS |
| CGGACAACAAATCGGTACTT+GGG | 0.512041 | tig0004863:-2677 | None:intergenic |
| TCTGAAGAAGCTTACCTATG+AGG | 0.512591 | tig0004863:+4697 | Msa1341780:CDS |
| TTTAGTGAATACATCAAGAA+AGG | 0.515819 | tig0004863:+4460 | Msa1341780:CDS |
| ATATTCCTCACAGCGACAAA+AGG | 0.517884 | tig0004863:+4208 | Msa1341780:CDS |
| GCTGACAAAAGGATACAAAT+CGG | 0.518595 | tig0004863:-2697 | None:intergenic |
| ATACAAATCGGACAACAAAT+CGG | 0.520677 | tig0004863:-2685 | None:intergenic |
| TCTCATGAGCTACCACACTT+TGG | 0.524328 | tig0004863:+3676 | Msa1341780:CDS |
| GAAGAAAGAGCTCGATGCTG+AGG | 0.526853 | tig0004863:+4251 | Msa1341780:CDS |
| ACAGCGACAAAAGGTTTGCT+GGG | 0.532028 | tig0004863:+4217 | Msa1341780:CDS |
| AATATCCAAACCACCATCTA+GGG | 0.535350 | tig0004863:-4190 | None:intergenic |
| TTAACCTCAATAAACAGTAC+AGG | 0.537908 | tig0004863:-4890 | None:intergenic |
| CTCAGGCTCATCTTCAGTCA+AGG | 0.537919 | tig0004863:-4422 | None:intergenic |
| TCACCGCAAGTATATCTTTG+GGG | 0.552159 | tig0004863:+4275 | Msa1341780:CDS |
| ATGTGACCAGCTTATTGCAC+TGG | 0.552187 | tig0004863:+3810 | Msa1341780:intron |
| AAAGACACGGTTTCCAGTAG+TGG | 0.561300 | tig0004863:-4063 | None:intergenic |
| TCGTATTCGCCTGATTAACC+AGG | 0.567348 | tig0004863:+2634 | Msa1341780:CDS |
| TGTTAAGGCTCAGAAATCCA+AGG | 0.572355 | tig0004863:+2446 | Msa1341780:CDS |
| TTACAGGGAGCCCTAGATGG+TGG | 0.573973 | tig0004863:+4180 | Msa1341780:intron |
| ATACATCAAGAAAGGAATTG+AGG | 0.575667 | tig0004863:+4468 | Msa1341780:CDS |
| AGAAGGAGCTAGGGTTTGAG+AGG | 0.578267 | tig0004863:-2125 | None:intergenic |
| CTGGATCCGCAAGAGTTGAT+GGG | 0.580297 | tig0004863:-2155 | None:intergenic |
| AAGTGTCTTCAGAACACGAC+GGG | 0.584750 | tig0004863:-3844 | None:intergenic |
| GAGATGGATGAGGAGTATGA+GGG | 0.586795 | tig0004863:+3867 | Msa1341780:CDS |
| AAGGTTTGCTGGGTTTGACA+AGG | 0.586996 | tig0004863:+4227 | Msa1341780:CDS |
| TGTGTTTGCAGCCCAAGTGA+TGG | 0.590338 | tig0004863:+4807 | Msa1341780:three_prime_UTR |
| AAGAAAGGAATTGAGGCAGA+TGG | 0.591978 | tig0004863:+4475 | Msa1341780:CDS |
| CCTTGAGGAGCTGTACAAGA+AGG | 0.592833 | tig0004863:+4498 | Msa1341780:CDS |
| CACCGCAAGTATATCTTTGG+GGG | 0.596512 | tig0004863:+4276 | Msa1341780:CDS |
| GAAGACACTTGAGATGGATG+AGG | 0.597148 | tig0004863:+3857 | Msa1341780:CDS |
| ACTCTTCCCATCAACTCTTG+CGG | 0.601744 | tig0004863:+2149 | Msa1341780:five_prime_UTR |
| GACCAACATCAAGGAGAGCA+CGG | 0.604422 | tig0004863:-4031 | None:intergenic |
| TAATGCTGCTGTTGATGATG+AGG | 0.605286 | tig0004863:+4757 | Msa1341780:CDS |
| CCTTCAAGGCACCAAAGACA+CGG | 0.609408 | tig0004863:-4076 | None:intergenic |
| GGACAACAAATCGGTACTTG+GGG | 0.611837 | tig0004863:-2676 | None:intergenic |
| TTGAGCCAGCTGAGTCCAGG+AGG | 0.614063 | tig0004863:+4003 | Msa1341780:CDS |
| TCTTAACAAGACCAACATCA+AGG | 0.618405 | tig0004863:-4040 | None:intergenic |
| ACATGTTGCTGCATACATGA+AGG | 0.618860 | tig0004863:+4299 | Msa1341780:CDS |
| TTAGACCAACAAGGACATAG+TGG | 0.621773 | tig0004863:+3600 | Msa1341780:intron |
| TGCTGTTGATGATGAGGACG+AGG | 0.625300 | tig0004863:+4763 | Msa1341780:CDS |
| GTTCTAGATATCCATCACTT+GGG | 0.629114 | tig0004863:-4818 | None:intergenic |
| AGTTGATGGGAAGAGTGAGA+AGG | 0.634670 | tig0004863:-2142 | None:intergenic |
| GGAGTATGAGGGAAATGTTG+AGG | 0.639543 | tig0004863:+3878 | Msa1341780:CDS |
| TGTTCTGAAGACACTTGAGA+TGG | 0.640254 | tig0004863:+3851 | Msa1341780:CDS |
| CCTTCTTGTACAGCTCCTCA+AGG | 0.646258 | tig0004863:-4498 | None:intergenic |
| AGGCTCCAAAACAACACAAG+AGG | 0.648143 | tig0004863:+4569 | Msa1341780:CDS |
| TCAGAACACGACGGGCCAAG+AGG | 0.649699 | tig0004863:-3836 | None:intergenic |
| ACATCAAGGAGAGCACGGAA+TGG | 0.653230 | tig0004863:-4026 | None:intergenic |
| AATTGAGGCAGATGGCCTTG+AGG | 0.657052 | tig0004863:+4483 | Msa1341780:CDS |
| TAATCAGGCGAATACGAGCA+CGG | 0.680796 | tig0004863:-2628 | None:intergenic |
| AACTCCTTATTAGACCAACA+AGG | 0.684350 | tig0004863:+3591 | Msa1341780:intron |
| AGAAGCTTACCTATGAGGAG+CGG | 0.703780 | tig0004863:+4702 | Msa1341780:CDS |
| AATATCACCAGCAATACTAG+CGG | 0.722529 | tig0004863:-3635 | None:intergenic |
| CCTACTGAAAGACCAAAGTG+TGG | 0.729262 | tig0004863:-3688 | None:intergenic |
| GACAACAAATCGGTACTTGG+GGG | 0.739465 | tig0004863:-2675 | None:intergenic |
| GATCAGCACGAATTGCAGCG+TGG | 0.746447 | tig0004863:-4522 | None:intergenic |
| CAAGTGTCTTCAGAACACGA+CGG | 0.780703 | tig0004863:-3845 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATGTTGATTTTTTA+TGG | + | tig0004863:2833-2852 | Msa1341780:intron | 10.0% |
| !!! | TTTTTTTTATGTGATTTAAC+TGG | + | tig0004863:2792-2811 | Msa1341780:intron | 15.0% |
| !! | TTAAATTTAAATGAGAACAA+GGG | - | tig0004863:3742-3761 | None:intergenic | 15.0% |
| !! | TTTAAATTTAAATGAGAACA+AGG | - | tig0004863:3743-3762 | None:intergenic | 15.0% |
| !!! | TGTTGGAATAATTTTTTTTA+AGG | + | tig0004863:5049-5068 | Msa1341780:three_prime_UTR | 15.0% |
| !!! | GTTGGAATAATTTTTTTTAA+GGG | + | tig0004863:5050-5069 | Msa1341780:three_prime_UTR | 15.0% |
| !!! | GTTTATAAAATTGTTTTGTT+TGG | - | tig0004863:5086-5105 | None:intergenic | 15.0% |
| !!! | TGTATTGTGTTTTTTGAATT+AGG | + | tig0004863:2419-2438 | Msa1341780:intron | 20.0% |
| !! | TTTGAATTAGGTTTATGTTA+AGG | + | tig0004863:2431-2450 | Msa1341780:intron | 20.0% |
| !!! | TAAATAATCAGCATACATTT+TGG | - | tig0004863:2573-2592 | None:intergenic | 20.0% |
| !! | ATTACACAAAAAAACCAAAA+GGG | - | tig0004863:2918-2937 | None:intergenic | 20.0% |
| !! | AATTACACAAAAAAACCAAA+AGG | - | tig0004863:2919-2938 | None:intergenic | 20.0% |
| !!! | GTTTTTGATTAGCATTTTTA+TGG | + | tig0004863:2940-2959 | Msa1341780:intron | 20.0% |
| !! | TCAATTGTTACAAATGTTAT+TGG | + | tig0004863:2976-2995 | Msa1341780:intron | 20.0% |
| !! | CAATTGTTACAAATGTTATT+GGG | + | tig0004863:2977-2996 | Msa1341780:intron | 20.0% |
| !! | AATTGTTACAAATGTTATTG+GGG | + | tig0004863:2978-2997 | Msa1341780:intron | 20.0% |
| !!! | TTATTTGTTGATTTTGTTAG+TGG | + | tig0004863:3349-3368 | Msa1341780:intron | 20.0% |
| !! | TAAGCTATCAAAAAGTTATA+AGG | - | tig0004863:3470-3489 | None:intergenic | 20.0% |
| !!! | TTAGTTTAATCCTTTTAAAC+AGG | + | tig0004863:3959-3978 | Msa1341780:intron | 20.0% |
| !! | GATTCTAGTATGAAATAAAA+GGG | - | tig0004863:4603-4622 | None:intergenic | 20.0% |
| !! | AGATTCTAGTATGAAATAAA+AGG | - | tig0004863:4604-4623 | None:intergenic | 20.0% |
| !! | GCATGTAATAAATAATACTA+AGG | - | tig0004863:4631-4650 | None:intergenic | 20.0% |
| !!! | TTTATTTGTTAATCTTGTGT+AGG | + | tig0004863:4669-4688 | Msa1341780:intron | 20.0% |
| !!! | GTTTATTGAGGTTAAAATTT+TGG | + | tig0004863:4898-4917 | Msa1341780:three_prime_UTR | 20.0% |
| !!! | AATTTTGGATAATTACAAGT+TGG | + | tig0004863:4913-4932 | Msa1341780:three_prime_UTR | 20.0% |
| !!! | ATTTTGGATAATTACAAGTT+GGG | + | tig0004863:4914-4933 | Msa1341780:three_prime_UTR | 20.0% |
| !!! | CCTTTACTTTTTTTATTAGT+CGG | + | tig0004863:5001-5020 | Msa1341780:three_prime_UTR | 20.0% |
| !! | ATATATGTTGTGTAACAATA+TGG | + | tig0004863:5110-5129 | Msa1341780:three_prime_UTR | 20.0% |
| ! | GATCTAAGAAATTAAAGCTA+TGG | - | tig0004863:2238-2257 | None:intergenic | 25.0% |
| ! | ATTGTTACAAATGTTATTGG+GGG | + | tig0004863:2979-2998 | Msa1341780:intron | 25.0% |
| !!! | CTTTGAGATAAAAACCAAAA+GGG | - | tig0004863:3017-3036 | None:intergenic | 25.0% |
| !!! | TCTTTGAGATAAAAACCAAA+AGG | - | tig0004863:3018-3037 | None:intergenic | 25.0% |
| ! | TAATTGTTAGAAATGCTAGT+CGG | + | tig0004863:3110-3129 | Msa1341780:intron | 25.0% |
| ! | TATAATTATCTCACATAACC+AGG | - | tig0004863:3187-3206 | None:intergenic | 25.0% |
| ! | AATTGTTTGTAATGCTAGTT+TGG | + | tig0004863:3387-3406 | Msa1341780:intron | 25.0% |
| ! | CAAAAAGTTATAAGGTGATT+TGG | - | tig0004863:3462-3481 | None:intergenic | 25.0% |
| !! | CTATTGTTAGTTGTTATTGT+TGG | + | tig0004863:3544-3563 | Msa1341780:intron | 25.0% |
| !!! | TAATGTTTTTAGTACCTTCA+AGG | - | tig0004863:4093-4112 | None:intergenic | 25.0% |
| !!! | GTTGATTTGAATATTTGTGA+TGG | + | tig0004863:4156-4175 | Msa1341780:intron | 25.0% |
| ! | AATATTTGTGATGGTTTACA+GGG | + | tig0004863:4165-4184 | Msa1341780:intron | 25.0% |
| !! | TCAATGTTATTCACAGATTT+TGG | - | tig0004863:4388-4407 | None:intergenic | 25.0% |
| ! | TTTAGTGAATACATCAAGAA+AGG | + | tig0004863:4460-4479 | Msa1341780:CDS | 25.0% |
| ! | TTCTCTGATTTCTTAATTGT+AGG | - | tig0004863:4547-4566 | None:intergenic | 25.0% |
| ! | CCGACTAATAAAAAAAGTAA+AGG | - | tig0004863:5004-5023 | None:intergenic | 25.0% |
| GAAACGAAATGAAGAGAAAA+TGG | - | tig0004863:2213-2232 | None:intergenic | 30.0% | |
| AAGAAATGTCAGAATGAAAG+AGG | - | tig0004863:2281-2300 | None:intergenic | 30.0% | |
| ! | AACTTCTTTTGTGTCGTATA+TGG | + | tig0004863:2362-2381 | Msa1341780:intron | 30.0% |
| ! | ACTTCTTTTGTGTCGTATAT+GGG | + | tig0004863:2363-2382 | Msa1341780:intron | 30.0% |
| ATACAAATCGGACAACAAAT+CGG | - | tig0004863:2688-2707 | None:intergenic | 30.0% | |
| CATAACTATAAGCTGACAAA+AGG | - | tig0004863:2711-2730 | None:intergenic | 30.0% | |
| ! | TATGATTTTCATTGATGCAC+TGG | + | tig0004863:2727-2746 | Msa1341780:CDS | 30.0% |
| GATAAAAACCAAAAGGGTTA+AGG | - | tig0004863:3011-3030 | None:intergenic | 30.0% | |
| ! | AATTGATCGTTGCATTTTTG+TGG | + | tig0004863:3073-3092 | Msa1341780:intron | 30.0% |
| AATTGTTAGAAATGCTAGTC+GGG | + | tig0004863:3111-3130 | Msa1341780:intron | 30.0% | |
| GAAGATGATGAAAACCAAAA+GGG | - | tig0004863:3156-3175 | None:intergenic | 30.0% | |
| AATTGTTAGAAATGCTAGTG+AGG | + | tig0004863:3259-3278 | Msa1341780:intron | 30.0% | |
| ATTGTTAGAAATGCTAGTGA+GGG | + | tig0004863:3260-3279 | Msa1341780:intron | 30.0% | |
| ! | TATAAGGTGATTTGGAAAGA+GGG | - | tig0004863:3454-3473 | None:intergenic | 30.0% |
| ! | TTATAAGGTGATTTGGAAAG+AGG | - | tig0004863:3455-3474 | None:intergenic | 30.0% |
| GAATATTTGTGATGGTTTAC+AGG | + | tig0004863:4164-4183 | Msa1341780:intron | 30.0% | |
| ATACATCAAGAAAGGAATTG+AGG | + | tig0004863:4468-4487 | Msa1341780:CDS | 30.0% | |
| AATTAAGAAATCAGAGAAGC+AGG | + | tig0004863:4549-4568 | Msa1341780:CDS | 30.0% | |
| !!! | AAATACCTCTTGTGTTGTTT+TGG | - | tig0004863:4577-4596 | None:intergenic | 30.0% |
| TTAACCTCAATAAACAGTAC+AGG | - | tig0004863:4893-4912 | None:intergenic | 30.0% | |
| TTCTTTGATGTGTTTCTTGT+TGG | + | tig0004863:5032-5051 | Msa1341780:three_prime_UTR | 30.0% | |
| ATGAAGAGAAAATGGAAGAG+TGG | - | tig0004863:2205-2224 | None:intergenic | 35.0% | |
| TTCTTCTCTTGAACTTGACT+TGG | - | tig0004863:2488-2507 | None:intergenic | 35.0% | |
| TGTTCTTATCCTGGTTAATC+AGG | - | tig0004863:2646-2665 | None:intergenic | 35.0% | |
| TGTTGTACTTGTTCTTATCC+TGG | - | tig0004863:2655-2674 | None:intergenic | 35.0% | |
| GCTGACAAAAGGATACAAAT+CGG | - | tig0004863:2700-2719 | None:intergenic | 35.0% | |
| CAAAAAAACCAAAAGGGTTG+TGG | - | tig0004863:2912-2931 | None:intergenic | 35.0% | |
| GGAAGATGATGAAAACCAAA+AGG | - | tig0004863:3157-3176 | None:intergenic | 35.0% | |
| TTGTTAGAAATGCTAGTGAG+GGG | + | tig0004863:3261-3280 | Msa1341780:intron | 35.0% | |
| ! | AGTTGAATCCACAATCCTTT+TGG | + | tig0004863:3284-3303 | Msa1341780:intron | 35.0% |
| AGAAGAAACCAAAAGGATTG+TGG | - | tig0004863:3295-3314 | None:intergenic | 35.0% | |
| !!! | TCCTTTTGGTTTCTTCTTCA+AGG | + | tig0004863:3298-3317 | Msa1341780:intron | 35.0% |
| TCCTTGAAGAAGAAACCAAA+AGG | - | tig0004863:3302-3321 | None:intergenic | 35.0% | |
| TTTCTTCTTCAAGGAAGACA+TGG | + | tig0004863:3307-3326 | Msa1341780:intron | 35.0% | |
| ! | ATATGAGTTGGAGGGATTAA+AGG | - | tig0004863:3429-3448 | None:intergenic | 35.0% |
| AACTCCTTATTAGACCAACA+AGG | + | tig0004863:3591-3610 | Msa1341780:intron | 35.0% | |
| ! | ATGTCCTTGTTGGTCTAATA+AGG | - | tig0004863:3598-3617 | None:intergenic | 35.0% |
| AATATCACCAGCAATACTAG+CGG | - | tig0004863:3638-3657 | None:intergenic | 35.0% | |
| ! | TACCTGCAGCATAATTTGTA+AGG | - | tig0004863:3714-3733 | None:intergenic | 35.0% |
| ! | AATCCTTTTAAACAGGCTAC+TGG | + | tig0004863:3966-3985 | Msa1341780:intron | 35.0% |
| TCTTAACAAGACCAACATCA+AGG | - | tig0004863:4043-4062 | None:intergenic | 35.0% | |
| AATATCCAAACCACCATCTA+GGG | - | tig0004863:4193-4212 | None:intergenic | 35.0% | |
| TTCACCGCAAGTATATCTTT+GGG | + | tig0004863:4274-4293 | Msa1341780:CDS | 35.0% | |
| TGTATTCACTAAAGTGAGTC+TGG | - | tig0004863:4453-4472 | None:intergenic | 35.0% | |
| ! | GTTCTAGATATCCATCACTT+GGG | - | tig0004863:4821-4840 | None:intergenic | 35.0% |
| !! | AGTTCTAGATATCCATCACT+TGG | - | tig0004863:4822-4841 | None:intergenic | 35.0% |
| !! | TTTCACTGGTTCAACTTTCT+GGG | + | tig0004863:4938-4957 | Msa1341780:three_prime_UTR | 35.0% |
| TGTAACAATATGGAGAGTTC+CGG | + | tig0004863:5120-5139 | Msa1341780:three_prime_UTR | 35.0% | |
| TGTTAAGGCTCAGAAATCCA+AGG | + | tig0004863:2446-2465 | Msa1341780:CDS | 40.0% | |
| GTCAAGTTCAAGAGAAGAAG+AGG | + | tig0004863:2489-2508 | Msa1341780:CDS | 40.0% | |
| ATTCGATGATGAATCTGCAG+AGG | + | tig0004863:2592-2611 | Msa1341780:intron | 40.0% | |
| TTCGATGATGAATCTGCAGA+GGG | + | tig0004863:2593-2612 | Msa1341780:intron | 40.0% | |
| AATGCTACTGTATGCTACTG+TGG | + | tig0004863:2877-2896 | Msa1341780:intron | 40.0% | |
| ATGCTACTGTATGCTACTGT+GGG | + | tig0004863:2878-2897 | Msa1341780:intron | 40.0% | |
| ! | AGTTGAATCCACAACCCTTT+TGG | + | tig0004863:2901-2920 | Msa1341780:intron | 40.0% |
| ! | GGTTGAATCCTTAACCCTTT+TGG | + | tig0004863:3000-3019 | Msa1341780:intron | 40.0% |
| TTAGACCAACAAGGACATAG+TGG | + | tig0004863:3600-3619 | Msa1341780:intron | 40.0% | |
| !! | TGTTCTGAAGACACTTGAGA+TGG | + | tig0004863:3851-3870 | Msa1341780:CDS | 40.0% |
| GCAAAGAACAGTGTCTAGAT+AGG | - | tig0004863:3932-3951 | None:intergenic | 40.0% | |
| TCTCCAGTAGCCTGTTTAAA+AGG | - | tig0004863:3972-3991 | None:intergenic | 40.0% | |
| ! | TTTTAAACAGGCTACTGGAG+AGG | + | tig0004863:3971-3990 | Msa1341780:intron | 40.0% |
| GAATATCCAAACCACCATCT+AGG | - | tig0004863:4194-4213 | None:intergenic | 40.0% | |
| ATATTCCTCACAGCGACAAA+AGG | + | tig0004863:4208-4227 | Msa1341780:CDS | 40.0% | |
| GTTCACCGCAAGTATATCTT+TGG | + | tig0004863:4273-4292 | Msa1341780:CDS | 40.0% | |
| TCACCGCAAGTATATCTTTG+GGG | + | tig0004863:4275-4294 | Msa1341780:CDS | 40.0% | |
| ACATGTTGCTGCATACATGA+AGG | + | tig0004863:4299-4318 | Msa1341780:CDS | 40.0% | |
| ! | AAGTGAGTCTGGAATTTCTC+AGG | - | tig0004863:4442-4461 | None:intergenic | 40.0% |
| AAGAAAGGAATTGAGGCAGA+TGG | + | tig0004863:4475-4494 | Msa1341780:CDS | 40.0% | |
| TCTGAAGAAGCTTACCTATG+AGG | + | tig0004863:4697-4716 | Msa1341780:CDS | 40.0% | |
| !! | TAATGCTGCTGTTGATGATG+AGG | + | tig0004863:4757-4776 | Msa1341780:CDS | 40.0% |
| GTTGCCTGTACTGTTTATTG+AGG | + | tig0004863:4886-4905 | Msa1341780:three_prime_UTR | 40.0% | |
| ! | ATTACAAGTTGGGCTTTCAC+TGG | + | tig0004863:4924-4943 | Msa1341780:three_prime_UTR | 40.0% |
| !! | CTTTCACTGGTTCAACTTTC+TGG | + | tig0004863:4937-4956 | Msa1341780:three_prime_UTR | 40.0% |
| GCATCATACTGATGCATAAC+CGG | - | tig0004863:5142-5161 | None:intergenic | 40.0% | |
| !! | AGTTGATGGGAAGAGTGAGA+AGG | - | tig0004863:2145-2164 | None:intergenic | 45.0% |
| ACTCTTCCCATCAACTCTTG+CGG | + | tig0004863:2149-2168 | Msa1341780:five_prime_UTR | 45.0% | |
| GTAACGCTTGAAGTAAGCCT+TGG | - | tig0004863:2466-2485 | None:intergenic | 45.0% | |
| TAATCAGGCGAATACGAGCA+CGG | - | tig0004863:2631-2650 | None:intergenic | 45.0% | |
| TCGTATTCGCCTGATTAACC+AGG | + | tig0004863:2634-2653 | Msa1341780:CDS | 45.0% | |
| GACAACAAATCGGTACTTGG+GGG | - | tig0004863:2678-2697 | None:intergenic | 45.0% | |
| GGACAACAAATCGGTACTTG+GGG | - | tig0004863:2679-2698 | None:intergenic | 45.0% | |
| CGGACAACAAATCGGTACTT+GGG | - | tig0004863:2680-2699 | None:intergenic | 45.0% | |
| TCGGACAACAAATCGGTACT+TGG | - | tig0004863:2681-2700 | None:intergenic | 45.0% | |
| !! | TAGTCGGGTTGAATCCACAA+CGG | + | tig0004863:3126-3145 | Msa1341780:intron | 45.0% |
| CATCATCTTCCATGAAGACC+TGG | + | tig0004863:3166-3185 | Msa1341780:intron | 45.0% | |
| CTCACATAACCAGGTCTTCA+TGG | - | tig0004863:3178-3197 | None:intergenic | 45.0% | |
| ! | AGAGGGACATATGAGTTGGA+GGG | - | tig0004863:3437-3456 | None:intergenic | 45.0% |
| ! | AAGAGGGACATATGAGTTGG+AGG | - | tig0004863:3438-3457 | None:intergenic | 45.0% |
| GGAAAGAGGGACATATGAGT+TGG | - | tig0004863:3441-3460 | None:intergenic | 45.0% | |
| ! | TTGTGCCACTATGTCCTTGT+TGG | - | tig0004863:3608-3627 | None:intergenic | 45.0% |
| ATAGTGTCCGCTAGTATTGC+TGG | + | tig0004863:3628-3647 | Msa1341780:CDS | 45.0% | |
| TCTCATGAGCTACCACACTT+TGG | + | tig0004863:3676-3695 | Msa1341780:CDS | 45.0% | |
| CCTACTGAAAGACCAAAGTG+TGG | - | tig0004863:3691-3710 | None:intergenic | 45.0% | |
| ! | CCACACTTTGGTCTTTCAGT+AGG | + | tig0004863:3688-3707 | Msa1341780:CDS | 45.0% |
| GGCCTTACAAATTATGCTGC+AGG | + | tig0004863:3709-3728 | Msa1341780:CDS | 45.0% | |
| ATGTGACCAGCTTATTGCAC+TGG | + | tig0004863:3810-3829 | Msa1341780:intron | 45.0% | |
| TTATTGCACTGGACTCCTCT+TGG | + | tig0004863:3821-3840 | Msa1341780:CDS | 45.0% | |
| AAGTGTCTTCAGAACACGAC+GGG | - | tig0004863:3847-3866 | None:intergenic | 45.0% | |
| CAAGTGTCTTCAGAACACGA+CGG | - | tig0004863:3848-3867 | None:intergenic | 45.0% | |
| GAAGACACTTGAGATGGATG+AGG | + | tig0004863:3857-3876 | Msa1341780:CDS | 45.0% | |
| ! | TGAGATGGATGAGGAGTATG+AGG | + | tig0004863:3866-3885 | Msa1341780:CDS | 45.0% |
| ! | GAGATGGATGAGGAGTATGA+GGG | + | tig0004863:3867-3886 | Msa1341780:CDS | 45.0% |
| GGAGTATGAGGGAAATGTTG+AGG | + | tig0004863:3878-3897 | Msa1341780:CDS | 45.0% | |
| !! | GGTCTTGTTAAGACCACTAC+TGG | + | tig0004863:4050-4069 | Msa1341780:CDS | 45.0% |
| AAAGACACGGTTTCCAGTAG+TGG | - | tig0004863:4066-4085 | None:intergenic | 45.0% | |
| ACTACTGGAAACCGTGTCTT+TGG | + | tig0004863:4065-4084 | Msa1341780:CDS | 45.0% | |
| ! | ACAGCGACAAAAGGTTTGCT+GGG | + | tig0004863:4217-4236 | Msa1341780:CDS | 45.0% |
| !! | AAGGTTTGCTGGGTTTGACA+AGG | + | tig0004863:4227-4246 | Msa1341780:CDS | 45.0% |
| CACCGCAAGTATATCTTTGG+GGG | + | tig0004863:4276-4295 | Msa1341780:CDS | 45.0% | |
| GTCCCCCAAAGATATACTTG+CGG | - | tig0004863:4281-4300 | None:intergenic | 45.0% | |
| AGGCTCCAAAACAACACAAG+AGG | + | tig0004863:4569-4588 | Msa1341780:CDS | 45.0% | |
| AGAAGCTTACCTATGAGGAG+CGG | + | tig0004863:4702-4721 | Msa1341780:CDS | 45.0% | |
| AGAAGGAGCTAGGGTTTGAG+AGG | - | tig0004863:2128-2147 | None:intergenic | 50.0% | |
| GGAAGAGTGAGAAGGAGCTA+GGG | - | tig0004863:2137-2156 | None:intergenic | 50.0% | |
| ! | CTGGATCCGCAAGAGTTGAT+GGG | - | tig0004863:2158-2177 | None:intergenic | 50.0% |
| ! | TCCACAACGGACAACCCTTT+TGG | + | tig0004863:3139-3158 | Msa1341780:intron | 50.0% |
| ACCAAAAGGGTTGTCCGTTG+TGG | - | tig0004863:3143-3162 | None:intergenic | 50.0% | |
| AGGAGTCCAGTGCAATAAGC+TGG | - | tig0004863:3819-3838 | None:intergenic | 50.0% | |
| ! | ACATCAAGGAGAGCACGGAA+TGG | - | tig0004863:4029-4048 | None:intergenic | 50.0% |
| TTCCGTGCTCTCCTTGATGT+TGG | + | tig0004863:4029-4048 | Msa1341780:CDS | 50.0% | |
| GACCAACATCAAGGAGAGCA+CGG | - | tig0004863:4034-4053 | None:intergenic | 50.0% | |
| ! | CCTTCAAGGCACCAAAGACA+CGG | - | tig0004863:4079-4098 | None:intergenic | 50.0% |
| ! | GCAAACCTTTTGTCGCTGTG+AGG | - | tig0004863:4216-4235 | None:intergenic | 50.0% |
| CACAGCGACAAAAGGTTTGC+TGG | + | tig0004863:4216-4235 | Msa1341780:CDS | 50.0% | |
| GAAGAAAGAGCTCGATGCTG+AGG | + | tig0004863:4251-4270 | Msa1341780:CDS | 50.0% | |
| CTCAGGCTCATCTTCAGTCA+AGG | - | tig0004863:4425-4444 | None:intergenic | 50.0% | |
| ! | AATTGAGGCAGATGGCCTTG+AGG | + | tig0004863:4483-4502 | Msa1341780:CDS | 50.0% |
| CCTTCTTGTACAGCTCCTCA+AGG | - | tig0004863:4501-4520 | None:intergenic | 50.0% | |
| CCTTGAGGAGCTGTACAAGA+AGG | + | tig0004863:4498-4517 | Msa1341780:CDS | 50.0% | |
| ! | CTTAGCTTTCCGCTCCTCAT+AGG | - | tig0004863:4714-4733 | None:intergenic | 50.0% |
| TGAGGAGCGGAAAGCTAAGT+TGG | + | tig0004863:4715-4734 | Msa1341780:CDS | 50.0% | |
| !! | TGCTGTTGATGATGAGGACG+AGG | + | tig0004863:4763-4782 | Msa1341780:CDS | 50.0% |
| TGTGTTTGCAGCCCAAGTGA+TGG | + | tig0004863:4807-4826 | Msa1341780:three_prime_UTR | 50.0% | |
| GGGAAGAGTGAGAAGGAGCT+AGG | - | tig0004863:2138-2157 | None:intergenic | 55.0% | |
| GCTGGATCCGCAAGAGTTGA+TGG | - | tig0004863:2159-2178 | None:intergenic | 55.0% | |
| TCCAGCTGCGTCTGCAACAA+TGG | + | tig0004863:2173-2192 | Msa1341780:exon | 55.0% | |
| ACCATTGTTGCAGACGCAGC+TGG | - | tig0004863:2177-2196 | None:intergenic | 55.0% | |
| !! | CCGTGTCTTTGGTGCCTTGA+AGG | + | tig0004863:4076-4095 | Msa1341780:CDS | 55.0% |
| GGTTTACAGGGAGCCCTAGA+TGG | + | tig0004863:4177-4196 | Msa1341780:intron | 55.0% | |
| TTACAGGGAGCCCTAGATGG+TGG | + | tig0004863:4180-4199 | Msa1341780:intron | 55.0% | |
| GATCAGCACGAATTGCAGCG+TGG | - | tig0004863:4525-4544 | None:intergenic | 55.0% | |
| TCAGAACACGACGGGCCAAG+AGG | - | tig0004863:3839-3858 | None:intergenic | 60.0% | |
| CAGTTGAGCCAGCTGAGTCC+AGG | + | tig0004863:4000-4019 | Msa1341780:CDS | 60.0% | |
| TTGAGCCAGCTGAGTCCAGG+AGG | + | tig0004863:4003-4022 | Msa1341780:CDS | 60.0% | |
| AATGGCCTCCTGGACTCAGC+TGG | - | tig0004863:4011-4030 | None:intergenic | 60.0% | |
| ! | GGGAGCCCTAGATGGTGGTT+TGG | + | tig0004863:4185-4204 | Msa1341780:intron | 60.0% |
| ! | GAGAGCACGGAATGGCCTCC+TGG | - | tig0004863:4021-4040 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004863 | gene | 2125 | 5191 | 2125 | ID=Msa1341780;Name=Msa1341780 |
| tig0004863 | mRNA | 2125 | 5191 | 2125 | ID=Msa1341780-mRNA-1;Parent=Msa1341780;Name=Msa1341780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|0.87|0.88|1|0.87|0.88|9|392|315 |
| tig0004863 | exon | 2125 | 2194 | 2125 | ID=Msa1341780-mRNA-1:exon:3308;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 2441 | 2510 | 2441 | ID=Msa1341780-mRNA-1:exon:3309;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 2612 | 2748 | 2612 | ID=Msa1341780-mRNA-1:exon:3310;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 3604 | 3730 | 3604 | ID=Msa1341780-mRNA-1:exon:3311;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 3820 | 3899 | 3820 | ID=Msa1341780-mRNA-1:exon:3312;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 3981 | 4097 | 3981 | ID=Msa1341780-mRNA-1:exon:3313;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 4186 | 4320 | 4186 | ID=Msa1341780-mRNA-1:exon:3314;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 4421 | 4590 | 4421 | ID=Msa1341780-mRNA-1:exon:3315;Parent=Msa1341780-mRNA-1 |
| tig0004863 | exon | 4691 | 5191 | 4691 | ID=Msa1341780-mRNA-1:exon:3316;Parent=Msa1341780-mRNA-1 |
| tig0004863 | five_prime_UTR | 2125 | 2191 | 2125 | ID=Msa1341780-mRNA-1:five_prime_utr;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 2192 | 2194 | 2192 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 2441 | 2510 | 2441 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 2612 | 2748 | 2612 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 3604 | 3730 | 3604 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 3820 | 3899 | 3820 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 3981 | 4097 | 3981 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 4186 | 4320 | 4186 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 4421 | 4590 | 4421 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | CDS | 4691 | 4799 | 4691 | ID=Msa1341780-mRNA-1:cds;Parent=Msa1341780-mRNA-1 |
| tig0004863 | three_prime_UTR | 4800 | 5191 | 4800 | ID=Msa1341780-mRNA-1:three_prime_utr;Parent=Msa1341780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
