AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0570880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570880 MtrunA17_Chr8g0382791 82.545 275 42 3 1 271 1 273 7.42e-158 440
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570880 AT5G10070.2 72.043 186 47 1 83 263 72 257 6.84e-92 273
Msa0570880 AT5G10070.1 82.456 114 20 0 83 196 72 185 8.29e-67 206

Find 66 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCTGTTGACACAGGATTT+TGG 0.156208 4_1:-73301704 Msa0570880:intron
CATGGCCGACCATAATTTAT+TGG 0.182712 4_1:+73300042 None:intergenic
CTTGGGTGGTGAATTGTTTC+CGG 0.211283 4_1:-73298258 Msa0570880:three_prime_UTR
TGTTGCTTGGCAAGTTTAAC+TGG 0.229226 4_1:-73299611 Msa0570880:CDS
CAACAGCCAATCCTTTATTC+TGG 0.275842 4_1:+73300427 None:intergenic
TGGCTGCTGCTTTGACAATA+TGG 0.286533 4_1:-73299996 Msa0570880:intron
CTCTAACCGTGCTGCGATAC+TGG 0.289821 4_1:-73298350 Msa0570880:three_prime_UTR
TACTCTTTAATCCAGAATAA+AGG 0.315486 4_1:-73300438 Msa0570880:CDS
TTACGTGTGACTAATGGTTT+TGG 0.315588 4_1:-73300744 Msa0570880:CDS
AAATAATTTCAGCACTGTTT+TGG 0.333601 4_1:+73298807 None:intergenic
GAAATAGCCGAGTAAGAAAA+AGG 0.346317 4_1:-73298074 Msa0570880:three_prime_UTR
GCGGCAAACCCAATAAATTA+TGG 0.347803 4_1:-73300051 Msa0570880:CDS
TTATTTCTGTTCAAAATGAT+TGG 0.353309 4_1:-73298790 Msa0570880:CDS
ATGGCCGACCATAATTTATT+GGG 0.359883 4_1:+73300043 None:intergenic
CTCTTCATCACTATTGTCTA+TGG 0.381809 4_1:+73298411 None:intergenic
AACTCTTCCGATTCTGATGA+TGG 0.381819 4_1:-73298469 Msa0570880:CDS
TCACTATCAGTAGGAGCCTT+TGG 0.382863 4_1:+73298746 None:intergenic
GAAAATCAAAGCTGCGTTCA+AGG 0.401936 4_1:-73302229 Msa0570880:CDS
TGAGAGTTGGTTGTGTCGGC+TGG 0.402049 4_1:+73302261 None:intergenic
TCGGCTGGATTGAGCATGAT+TGG 0.404120 4_1:+73302276 None:intergenic
CGGCTGGATTGAGCATGATT+GGG 0.412724 4_1:+73302277 None:intergenic
GCTATCTTGTGTAGAGGCCT+TGG 0.413021 4_1:-73300016 Msa0570880:CDS
GAGACACATTGCTTTCCAAC+TGG 0.415063 4_1:+73300471 None:intergenic
GATTAAAGAGTAATCTTCTC+TGG 0.428373 4_1:+73300449 None:intergenic
TTGGCTGTCACAAGCGCGTC+AGG 0.444650 4_1:-73298771 Msa0570880:CDS
CGGACGCAAGCTTTCAAGAC+TGG 0.444859 4_1:-73301657 Msa0570880:CDS
GTTGCTTGGCAAGTTTAACT+GGG 0.464029 4_1:-73299610 Msa0570880:CDS
GGACGCAAGCTTTCAAGACT+GGG 0.466552 4_1:-73301656 Msa0570880:intron
CAGGAGTTACGTGTGACTAA+TGG 0.482383 4_1:-73300750 Msa0570880:CDS
TTTAATCCAGAATAAAGGAT+TGG 0.488019 4_1:-73300433 Msa0570880:CDS
GAATAAAGGATTGGCTGTTG+TGG 0.490897 4_1:-73300424 Msa0570880:CDS
GGCTGTTGTGGATTGCTCGT+GGG 0.496557 4_1:-73300412 Msa0570880:CDS
GCACAGCGCAACTTCACAAA+AGG 0.499531 4_1:+73300372 None:intergenic
TGGAAGCCCATCATCAGAAT+CGG 0.511595 4_1:+73298462 None:intergenic
GAAACAGCAAATCTGTTGCT+TGG 0.521180 4_1:-73299624 Msa0570880:CDS
CAGTCTTGAAAGCTTGCGTC+CGG 0.521650 4_1:+73301658 None:intergenic
GCTGAGATATGCATCACCTT+GGG 0.531968 4_1:-73298275 Msa0570880:three_prime_UTR
AGCTGAGATATGCATCACCT+TGG 0.537821 4_1:-73298276 Msa0570880:three_prime_UTR
ATGGGCTTCCACCTCTTGAA+AGG 0.540522 4_1:-73298450 Msa0570880:CDS
TTTCGTTGTCTAGTGAGAGT+TGG 0.547894 4_1:+73302248 None:intergenic
TTCATGTTCCTTTCAAGAGG+TGG 0.548622 4_1:+73298442 None:intergenic
ACTCTTCCGATTCTGATGAT+GGG 0.551069 4_1:-73298468 Msa0570880:CDS
GGGTTTGCCGCTACAAGCCA+TGG 0.551853 4_1:+73300063 None:intergenic
TTAAAATATAAGAGAAACGC+CGG 0.553123 4_1:+73298239 None:intergenic
TGGCTGTTGTGGATTGCTCG+TGG 0.556974 4_1:-73300413 Msa0570880:CDS
TGATTCATGTTCCTTTCAAG+AGG 0.557002 4_1:+73298439 None:intergenic
TGCAGTGCCATGGCTTGTAG+CGG 0.560226 4_1:-73300070 Msa0570880:intron
CGAAAATTACATGAACATCA+AGG 0.561944 4_1:+73298153 None:intergenic
CTAGTGAGAGTTGGTTGTGT+CGG 0.563931 4_1:+73302257 None:intergenic
TATTGTCAAAGCAGCAGCCA+AGG 0.583613 4_1:+73299999 None:intergenic
CGGAAACAATTCACCACCCA+AGG 0.588473 4_1:+73298259 None:intergenic
CTGCGATACTGGAATCAACA+TGG 0.593775 4_1:-73298339 Msa0570880:three_prime_UTR
ATGTCAGCTATCTTGTGTAG+AGG 0.595536 4_1:-73300022 Msa0570880:CDS
TTGCTTGGCAAGTTTAACTG+GGG 0.613832 4_1:-73299609 Msa0570880:CDS
GAACATCAAGGCCTTGCAGA+GGG 0.616234 4_1:+73298165 None:intergenic
ACAAGCGCGTCAGGTTCCAA+AGG 0.621270 4_1:-73298762 Msa0570880:CDS
CCAATACAGGGAATTACTGA+AGG 0.625012 4_1:-73298843 Msa0570880:intron
GGCTGGATTGAGCATGATTG+GGG 0.631526 4_1:+73302278 None:intergenic
CAAACCCAATAAATTATGGT+CGG 0.643896 4_1:-73300047 Msa0570880:CDS
TCTACACAAGATAGCTGACA+TGG 0.652062 4_1:+73300024 None:intergenic
TTGATTCCAGTATCGCAGCA+CGG 0.652272 4_1:+73298344 None:intergenic
TGAACATCAAGGCCTTGCAG+AGG 0.658451 4_1:+73298164 None:intergenic
TATAAGTTCATACAGAGGCG+AGG 0.658960 4_1:+73300345 None:intergenic
CACAGACCTTCACTATCAGT+AGG 0.664914 4_1:+73298737 None:intergenic
GAGATATGCATCACCTTGGG+TGG 0.691196 4_1:-73298272 Msa0570880:three_prime_UTR
GAGAGCGAGAGAGAGATGGG+TGG 0.691380 4_1:-73302334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTAATTATATGAAT+GGG - chr4_1:73299265-73299284 Msa0570880:intron 10.0%
!! CAAAATTTGAATAAAAATTT+AGG - chr4_1:73300608-73300627 Msa0570880:intron 10.0%
!!! CATTATTTTTTACATTCAAT+AGG - chr4_1:73298790-73298809 Msa0570880:CDS 15.0%
!!! CTTTTGTTTAATTATATGAA+TGG - chr4_1:73299264-73299283 Msa0570880:intron 15.0%
!!! TGTTTTTTATACAATTTCTT+TGG - chr4_1:73299401-73299420 Msa0570880:intron 15.0%
!!! CAAAAAATTGATGATATAAA+AGG - chr4_1:73299449-73299468 Msa0570880:intron 15.0%
!! CAAAGTAAATTATTAAGTTT+GGG + chr4_1:73300634-73300653 None:intergenic 15.0%
!!! TTAACAAAAAAATTTGTTCA+TGG + chr4_1:73301144-73301163 None:intergenic 15.0%
!! TTAGTTATGTATAAATAACT+AGG - chr4_1:73301197-73301216 Msa0570880:intron 15.0%
!! TAGTTATGTATAAATAACTA+GGG - chr4_1:73301198-73301217 Msa0570880:intron 15.0%
!!! TATTTACTTTATCATTTTCA+AGG - chr4_1:73302278-73302297 Msa0570880:CDS 15.0%
!! AGAGTTAAATTATGTTCATA+AGG + chr4_1:73298382-73298401 None:intergenic 20.0%
!!! GATTAGTTTTTGTTTTTTTC+TGG - chr4_1:73298905-73298924 Msa0570880:intron 20.0%
!!! AATTTCATGTATAGTTTTAG+AGG + chr4_1:73299073-73299092 None:intergenic 20.0%
!! TCCAAATCTAATATTTCATA+TGG - chr4_1:73299202-73299221 Msa0570880:intron 20.0%
!! TCCATATGAAATATTAGATT+TGG + chr4_1:73299206-73299225 None:intergenic 20.0%
!! AAATCTAATATTTCATATGG+AGG - chr4_1:73299205-73299224 Msa0570880:intron 20.0%
!!! AATTGATGATATAAAAGGTT+TGG - chr4_1:73299454-73299473 Msa0570880:intron 20.0%
!!! TTTGTTGTTGATTATGTAAT+CGG - chr4_1:73299532-73299551 Msa0570880:intron 20.0%
!! CTTATTATATAATATGTCAG+TGG - chr4_1:73299584-73299603 Msa0570880:intron 20.0%
!! TCTTAAAAACGTTAATAAGA+AGG + chr4_1:73299710-73299729 None:intergenic 20.0%
!!! CAATATTTTGTTTTCTCTTT+TGG - chr4_1:73299799-73299818 Msa0570880:intron 20.0%
!!! ATTACCAATGTGTTTTTAAA+TGG - chr4_1:73300583-73300602 Msa0570880:intron 20.0%
!! GCAAAGTAAATTATTAAGTT+TGG + chr4_1:73300635-73300654 None:intergenic 20.0%
!! TTAATAATTTACTTTGCAGT+TGG - chr4_1:73300638-73300657 Msa0570880:intron 20.0%
!! ATTATTGAAATGAAAACTGT+TGG - chr4_1:73300697-73300716 Msa0570880:intron 20.0%
!! TTTCACTTATGATATTTACA+AGG - chr4_1:73300874-73300893 Msa0570880:intron 20.0%
!! TTCACTTATGATATTTACAA+GGG - chr4_1:73300875-73300894 Msa0570880:intron 20.0%
!!! TTTTTATATCATGAACTACA+AGG + chr4_1:73300996-73301015 None:intergenic 20.0%
!! CTTATAAATATGCTTCATAA+AGG + chr4_1:73301057-73301076 None:intergenic 20.0%
!! ATTTGATTCTCAATTATTTG+TGG - chr4_1:73301477-73301496 Msa0570880:intron 20.0%
!!! TTATTTCTGTTCAAAATGAT+TGG - chr4_1:73301590-73301609 Msa0570880:intron 20.0%
!! AAAAATTCACAATATATCAG+AGG + chr4_1:73301823-73301842 None:intergenic 20.0%
! ATAAGCTACTATTCTAACAA+AGG + chr4_1:73298422-73298441 None:intergenic 25.0%
! CATGATATTAGATCCAAATT+CGG + chr4_1:73298647-73298666 None:intergenic 25.0%
!!! TTAAAATGGTTTTGAATGCT+AGG - chr4_1:73298949-73298968 Msa0570880:intron 25.0%
! GTGAAACAAATATCAATTAG+AGG + chr4_1:73299025-73299044 None:intergenic 25.0%
! GTTTAATTATATGAATGGGT+AGG - chr4_1:73299269-73299288 Msa0570880:intron 25.0%
! TAGATACTATGATATCTCTA+TGG + chr4_1:73299355-73299374 None:intergenic 25.0%
! TCTTTGGACAAAAAATTTAG+TGG - chr4_1:73299417-73299436 Msa0570880:intron 25.0%
! AAACAAAATATTGCTTCACA+AGG + chr4_1:73299792-73299811 None:intergenic 25.0%
! TACTCTTTAATCCAGAATAA+AGG - chr4_1:73299942-73299961 Msa0570880:intron 25.0%
! TTTAATCCAGAATAAAGGAT+TGG - chr4_1:73299947-73299966 Msa0570880:intron 25.0%
! CATTACATTATTTGTGATTG+AGG + chr4_1:73300278-73300297 None:intergenic 25.0%
! TTGACAATATGGTATAGTAA+TGG - chr4_1:73300395-73300414 Msa0570880:CDS 25.0%
! ATAATTATGACTAGACACTT+TGG - chr4_1:73300422-73300441 Msa0570880:CDS 25.0%
!! TTTCAGTTACAATTTTTGCA+GGG + chr4_1:73300473-73300492 None:intergenic 25.0%
!! ATTTCAGTTACAATTTTTGC+AGG + chr4_1:73300474-73300493 None:intergenic 25.0%
! TCAGCCAACATAAAAAATAT+GGG + chr4_1:73300504-73300523 None:intergenic 25.0%
! ATCAGCCAACATAAAAAATA+TGG + chr4_1:73300505-73300524 None:intergenic 25.0%
! TGTTCCATTTAAAAACACAT+TGG + chr4_1:73300590-73300609 None:intergenic 25.0%
!!! TTATTTTCACTTTGCTATCT+AGG - chr4_1:73300847-73300866 Msa0570880:intron 25.0%
! TAATTCCAGTATTCATTTGT+AGG + chr4_1:73301102-73301121 None:intergenic 25.0%
! GATATTAGATCTCTCAATTA+AGG + chr4_1:73301309-73301328 None:intergenic 25.0%
!! GAATGAATTTTGTTCACAAT+TGG + chr4_1:73301409-73301428 None:intergenic 25.0%
!! AAATAATTTCAGCACTGTTT+TGG + chr4_1:73301576-73301595 None:intergenic 25.0%
!! ATATCTATTTTACACGATAG+TGG - chr4_1:73301674-73301693 Msa0570880:CDS 25.0%
!! TATCTATTTTACACGATAGT+GGG - chr4_1:73301675-73301694 Msa0570880:CDS 25.0%
! TAGATAAAAGATTGAACACA+TGG + chr4_1:73301725-73301744 None:intergenic 25.0%
!!! ATTTGTTTTTAATCTGACAC+TGG - chr4_1:73302001-73302020 Msa0570880:intron 25.0%
! TTAAAATATAAGAGAAACGC+CGG + chr4_1:73302144-73302163 None:intergenic 25.0%
!! TCATAATCCTTTTTCTTACT+CGG + chr4_1:73302316-73302335 None:intergenic 25.0%
! TGTTCATAAGGTATCTTTGA+GGG + chr4_1:73298370-73298389 None:intergenic 30.0%
! ATGTTCATAAGGTATCTTTG+AGG + chr4_1:73298371-73298390 None:intergenic 30.0%
ATTCTAACAAAGGATAGGAT+AGG + chr4_1:73298412-73298431 None:intergenic 30.0%
CTACTATTCTAACAAAGGAT+AGG + chr4_1:73298417-73298436 None:intergenic 30.0%
GTTCCATAAAAATCCACAAT+CGG + chr4_1:73298551-73298570 None:intergenic 30.0%
! ATTTTTATGGAACCCAAAGT+TGG - chr4_1:73298558-73298577 Msa0570880:intron 30.0%
TCTAATATCATGCATGTCAT+TGG - chr4_1:73298655-73298674 Msa0570880:intron 30.0%
CTAATATCATGCATGTCATT+GGG - chr4_1:73298656-73298675 Msa0570880:intron 30.0%
TTGTGAGTGCAAATACATAT+TGG - chr4_1:73298820-73298839 Msa0570880:CDS 30.0%
TCAAATTAATGCAGGTACAA+GGG + chr4_1:73298859-73298878 None:intergenic 30.0%
ATCAAATTAATGCAGGTACA+AGG + chr4_1:73298860-73298879 None:intergenic 30.0%
CTTCAACATCAAATTAATGC+AGG + chr4_1:73298867-73298886 None:intergenic 30.0%
GAAACAGAGTTGCAAAATAT+TGG - chr4_1:73298976-73298995 Msa0570880:intron 30.0%
AAAATATTGGACGATCACAT+TGG - chr4_1:73298989-73299008 Msa0570880:intron 30.0%
ATCATACTTGAAGTATGAAG+AGG - chr4_1:73299148-73299167 Msa0570880:intron 30.0%
CCACAGATTAAAGTAATTGT+GGG + chr4_1:73299322-73299341 None:intergenic 30.0%
ACCACAGATTAAAGTAATTG+TGG + chr4_1:73299323-73299342 None:intergenic 30.0%
ACTTTAATCTGTGGTAATAC+TGG - chr4_1:73299328-73299347 Msa0570880:intron 30.0%
! GATGATATAAAAGGTTTGGT+TGG - chr4_1:73299458-73299477 Msa0570880:intron 30.0%
! TAAAAGGTTTGGTTGGTTAA+TGG - chr4_1:73299465-73299484 Msa0570880:intron 30.0%
GATTAAAGAGTAATCTTCTC+TGG + chr4_1:73299934-73299953 None:intergenic 30.0%
CAAACCCAATAAATTATGGT+CGG - chr4_1:73300333-73300352 Msa0570880:intron 30.0%
! TTCAGTTACAATTTTTGCAG+GGG + chr4_1:73300472-73300491 None:intergenic 30.0%
!!! GTGTCCCATATTTTTTATGT+TGG - chr4_1:73300497-73300516 Msa0570880:intron 30.0%
ATAATTTACTTTGCAGTTGG+CGG - chr4_1:73300641-73300660 Msa0570880:intron 30.0%
!!! CTTTTTTCATTTAACTGTGC+GGG + chr4_1:73300935-73300954 None:intergenic 30.0%
!!! GCTTTTTTCATTTAACTGTG+CGG + chr4_1:73300936-73300955 None:intergenic 30.0%
AGTTAAATGAAAAAAGCCAC+AGG - chr4_1:73300939-73300958 Msa0570880:intron 30.0%
GTTAAATGAAAAAAGCCACA+GGG - chr4_1:73300940-73300959 Msa0570880:intron 30.0%
AGGTTTGAAAGAAATCAAGA+GGG + chr4_1:73300976-73300995 None:intergenic 30.0%
AAGGTTTGAAAGAAATCAAG+AGG + chr4_1:73300977-73300996 None:intergenic 30.0%
TCAGATACAAGAGTAATCAA+GGG + chr4_1:73301275-73301294 None:intergenic 30.0%
ATCAGATACAAGAGTAATCA+AGG + chr4_1:73301276-73301295 None:intergenic 30.0%
TTTCATGGAAACGAAACAAT+TGG + chr4_1:73301431-73301450 None:intergenic 30.0%
AACTTTCCTTTAACCAATAC+AGG - chr4_1:73301524-73301543 Msa0570880:intron 30.0%
ACTTTCCTTTAACCAATACA+GGG - chr4_1:73301525-73301544 Msa0570880:intron 30.0%
!! TAATTCCCTGTATTGGTTAA+AGG + chr4_1:73301533-73301552 None:intergenic 30.0%
!!! ACTGTTTTGGCATTTAGAAT+AGG + chr4_1:73301563-73301582 None:intergenic 30.0%
CGAAAATTACATGAACATCA+AGG + chr4_1:73302230-73302249 None:intergenic 30.0%
! CACATTGCAAGCTTGATTTT+GGG + chr4_1:73298313-73298332 None:intergenic 35.0%
CAAAATCAAGCTTGCAATGT+GGG - chr4_1:73298312-73298331 Msa0570880:three_prime_UTR 35.0%
! TCTCCGATTGTGGATTTTTA+TGG - chr4_1:73298545-73298564 Msa0570880:intron 35.0%
GATATTAGATCCAAATTCGG+CGG + chr4_1:73298644-73298663 None:intergenic 35.0%
TTTGTTTCACATGCTTTCAC+TGG - chr4_1:73299035-73299054 Msa0570880:intron 35.0%
! TAGAGTTTTTGTAATGCCAC+AGG - chr4_1:73299296-73299315 Msa0570880:intron 35.0%
CCCACAATTACTTTAATCTG+TGG - chr4_1:73299319-73299338 Msa0570880:intron 35.0%
GTTGATTATGTAATCGGTGA+AGG - chr4_1:73299538-73299557 Msa0570880:intron 35.0%
GCACAAGATATATCAGATTC+AGG + chr4_1:73299611-73299630 None:intergenic 35.0%
GAATCTGATATATCTTGTGC+AGG - chr4_1:73299611-73299630 Msa0570880:CDS 35.0%
! TTACGTGTGACTAATGGTTT+TGG - chr4_1:73299636-73299655 Msa0570880:CDS 35.0%
! TACGTGTGACTAATGGTTTT+GGG - chr4_1:73299637-73299656 Msa0570880:CDS 35.0%
AGTAGTTATTCAGCGAACAA+AGG + chr4_1:73299870-73299889 None:intergenic 35.0%
!! TTGTGTTTTTACAGTCCAGT+TGG - chr4_1:73299894-73299913 Msa0570880:intron 35.0%
AAGCGTATAAGTTCATACAG+AGG + chr4_1:73300043-73300062 None:intergenic 35.0%
GGCAGAAAGATTAAATGCAA+TGG + chr4_1:73300242-73300261 None:intergenic 35.0%
TTAATCTTTCTGCCTCGTTT+AGG - chr4_1:73300248-73300267 Msa0570880:intron 35.0%
TAATCTTTCTGCCTCGTTTA+GGG - chr4_1:73300249-73300268 Msa0570880:intron 35.0%
! TTCTTTTTATTGCAGTGCCA+TGG - chr4_1:73300300-73300319 Msa0570880:intron 35.0%
ATGGCCGACCATAATTTATT+GGG + chr4_1:73300340-73300359 None:intergenic 35.0%
! TCAGTTACAATTTTTGCAGG+GGG + chr4_1:73300471-73300490 None:intergenic 35.0%
TAGCATGATCTGTTGTGTTT+GGG + chr4_1:73300564-73300583 None:intergenic 35.0%
ATAGCATGATCTGTTGTGTT+TGG + chr4_1:73300565-73300584 None:intergenic 35.0%
! TTCTTTGCTATATCTTGCAG+TGG - chr4_1:73300726-73300745 Msa0570880:intron 35.0%
CAGTACCTACAAATGAATAC+TGG - chr4_1:73301094-73301113 Msa0570880:intron 35.0%
CAGATACAAGAGTAATCAAG+GGG + chr4_1:73301274-73301293 None:intergenic 35.0%
!!! TTTTTTTCTCCTATGCTGCA+TGG - chr4_1:73301853-73301872 Msa0570880:intron 35.0%
TGATTCATGTTCCTTTCAAG+AGG + chr4_1:73301944-73301963 None:intergenic 35.0%
CTCTTCATCACTATTGTCTA+TGG + chr4_1:73301972-73301991 None:intergenic 35.0%
GAAATAGCCGAGTAAGAAAA+AGG - chr4_1:73302306-73302325 Msa0570880:CDS 35.0%
TTTCGTTGTCTAGTGAGAGT+TGG + chr4_1:73298135-73298154 None:intergenic 40.0%
GAAAATCAAAGCTGCGTTCA+AGG - chr4_1:73298151-73298170 Msa0570880:three_prime_UTR 40.0%
TCTTCATTATCACCCTCACA+AGG + chr4_1:73298271-73298290 None:intergenic 40.0%
! GGGTGATAATGAAGAATCAG+AGG - chr4_1:73298276-73298295 Msa0570880:three_prime_UTR 40.0%
! CCACATTGCAAGCTTGATTT+TGG + chr4_1:73298314-73298333 None:intergenic 40.0%
CCAAAATCAAGCTTGCAATG+TGG - chr4_1:73298311-73298330 Msa0570880:three_prime_UTR 40.0%
! ACGCTAAAGTAAGGCTTGTT+TGG + chr4_1:73298503-73298522 None:intergenic 40.0%
ACAATCGGAGATACTCTTAG+AGG + chr4_1:73298536-73298555 None:intergenic 40.0%
!! TCTAAGAGTATCTCCGATTG+TGG - chr4_1:73298535-73298554 Msa0570880:intron 40.0%
ACGATCACATTGGATGTCAA+AGG - chr4_1:73298999-73299018 Msa0570880:intron 40.0%
GCTTTCACTGGAGTAATCTT+AGG - chr4_1:73299047-73299066 Msa0570880:intron 40.0%
! ATATGGAGGAAGCCTTTTGA+GGG - chr4_1:73299219-73299238 Msa0570880:intron 40.0%
TTAAAGTAATTGTGGGCCTG+TGG + chr4_1:73299315-73299334 None:intergenic 40.0%
!! ACGTGTGACTAATGGTTTTG+GGG - chr4_1:73299638-73299657 Msa0570880:intron 40.0%
!!! GTTTTGGGGGAATTGCTTTA+AGG - chr4_1:73299652-73299671 Msa0570880:intron 40.0%
!! GGGAATTGCTTTAAGGTACT+TGG - chr4_1:73299659-73299678 Msa0570880:intron 40.0%
AACTTCACAGCTAGACGAAA+TGG - chr4_1:73299751-73299770 Msa0570880:intron 40.0%
ACTTCACAGCTAGACGAAAT+GGG - chr4_1:73299752-73299771 Msa0570880:intron 40.0%
CAACAGCCAATCCTTTATTC+TGG + chr4_1:73299956-73299975 None:intergenic 40.0%
!! GAATAAAGGATTGGCTGTTG+TGG - chr4_1:73299956-73299975 Msa0570880:intron 40.0%
TATAAGTTCATACAGAGGCG+AGG + chr4_1:73300038-73300057 None:intergenic 40.0%
AAATACAGCAGTGTAGAACC+AGG - chr4_1:73300105-73300124 Msa0570880:intron 40.0%
TAGAACCAGGTTGTCAATAG+CGG - chr4_1:73300118-73300137 Msa0570880:intron 40.0%
ACGTTATTGCCAGATAGTAG+CGG + chr4_1:73300187-73300206 None:intergenic 40.0%
GCGGCAAACCCAATAAATTA+TGG - chr4_1:73300329-73300348 Msa0570880:intron 40.0%
CATGGCCGACCATAATTTAT+TGG + chr4_1:73300341-73300360 None:intergenic 40.0%
TCTACACAAGATAGCTGACA+TGG + chr4_1:73300359-73300378 None:intergenic 40.0%
ATGTCAGCTATCTTGTGTAG+AGG - chr4_1:73300358-73300377 Msa0570880:CDS 40.0%
GAAACAGCAAATCTGTTGCT+TGG - chr4_1:73300756-73300775 Msa0570880:intron 40.0%
! TGTTGCTTGGCAAGTTTAAC+TGG - chr4_1:73300769-73300788 Msa0570880:intron 40.0%
GTTGCTTGGCAAGTTTAACT+GGG - chr4_1:73300770-73300789 Msa0570880:intron 40.0%
TTGCTTGGCAAGTTTAACTG+GGG - chr4_1:73300771-73300790 Msa0570880:intron 40.0%
AAGAAATCAAGAGGGACTCT+GGG + chr4_1:73300968-73300987 None:intergenic 40.0%
AAAGAAATCAAGAGGGACTC+TGG + chr4_1:73300969-73300988 None:intergenic 40.0%
TTCATGGCTACATACAGAGA+TGG + chr4_1:73301128-73301147 None:intergenic 40.0%
CCTAACAATCATAGCTAGTG+AGG + chr4_1:73301224-73301243 None:intergenic 40.0%
CCTCACTAGCTATGATTGTT+AGG - chr4_1:73301221-73301240 Msa0570880:intron 40.0%
CATGTTAGACACGGATTTCA+TGG + chr4_1:73301446-73301465 None:intergenic 40.0%
AGTGAATCGCATGTTAGACA+CGG + chr4_1:73301455-73301474 None:intergenic 40.0%
CCTTCAGTAATTCCCTGTAT+TGG + chr4_1:73301540-73301559 None:intergenic 40.0%
CCAATACAGGGAATTACTGA+AGG - chr4_1:73301537-73301556 Msa0570880:intron 40.0%
!! TTACACGATAGTGGGTGTTA+TGG - chr4_1:73301683-73301702 Msa0570880:CDS 40.0%
AACTCTTCCGATTCTGATGA+TGG - chr4_1:73301911-73301930 Msa0570880:intron 40.0%
ACTCTTCCGATTCTGATGAT+GGG - chr4_1:73301912-73301931 Msa0570880:intron 40.0%
TTCATGTTCCTTTCAAGAGG+TGG + chr4_1:73301941-73301960 None:intergenic 40.0%
! ACATGTATTTTCCCTCTGCA+AGG - chr4_1:73302204-73302223 Msa0570880:CDS 40.0%
! CTAGTGAGAGTTGGTTGTGT+CGG + chr4_1:73298126-73298145 None:intergenic 45.0%
TCTAACTGCAGAACCTTGTG+AGG - chr4_1:73298255-73298274 Msa0570880:three_prime_UTR 45.0%
CTAACTGCAGAACCTTGTGA+GGG - chr4_1:73298256-73298275 Msa0570880:three_prime_UTR 45.0%
GGAGGCTAAACGCTAAAGTA+AGG + chr4_1:73298512-73298531 None:intergenic 45.0%
ATCGGAGATACTCTTAGAGG+AGG + chr4_1:73298533-73298552 None:intergenic 45.0%
GTGGTTACGGAACCAACTTT+GGG + chr4_1:73298573-73298592 None:intergenic 45.0%
AGTGGTTACGGAACCAACTT+TGG + chr4_1:73298574-73298593 None:intergenic 45.0%
!! TTAGCTCCTCTAGAGTGAGT+GGG + chr4_1:73298600-73298619 None:intergenic 45.0%
!! TTTAGCTCCTCTAGAGTGAG+TGG + chr4_1:73298601-73298620 None:intergenic 45.0%
GTATACATCACCGCCGAATT+TGG - chr4_1:73298631-73298650 Msa0570880:intron 45.0%
! GGCTGTTGACACAGGATTTT+GGG - chr4_1:73298677-73298696 Msa0570880:intron 45.0%
! TGTGATGCCAAAAAGTGCAC+CGG - chr4_1:73298703-73298722 Msa0570880:intron 45.0%
! CATATGGAGGAAGCCTTTTG+AGG - chr4_1:73299218-73299237 Msa0570880:intron 45.0%
CAGGAGTTACGTGTGACTAA+TGG - chr4_1:73299630-73299649 Msa0570880:CDS 45.0%
!!! CGTGTGACTAATGGTTTTGG+GGG - chr4_1:73299639-73299658 Msa0570880:intron 45.0%
GAGACACATTGCTTTCCAAC+TGG + chr4_1:73299912-73299931 None:intergenic 45.0%
ACATGGTACCACTATTGCAG+CGG - chr4_1:73300141-73300160 Msa0570880:intron 45.0%
TATTGTCAAAGCAGCAGCCA+AGG + chr4_1:73300384-73300403 None:intergenic 45.0%
!! TGGCTGCTGCTTTGACAATA+TGG - chr4_1:73300384-73300403 Msa0570880:CDS 45.0%
! TTTTGCAGGGGGTGAATTGT+AGG + chr4_1:73300460-73300479 None:intergenic 45.0%
GAGTAATCAAGGGGCTAATC+AGG + chr4_1:73301265-73301284 None:intergenic 45.0%
TAAACTCCTTGAGTTCGCAG+TGG + chr4_1:73301374-73301393 None:intergenic 45.0%
TCACTATCAGTAGGAGCCTT+TGG + chr4_1:73301637-73301656 None:intergenic 45.0%
! AAGGCTCCTACTGATAGTGA+AGG - chr4_1:73301637-73301656 Msa0570880:intron 45.0%
CACAGACCTTCACTATCAGT+AGG + chr4_1:73301646-73301665 None:intergenic 45.0%
GTTGCATACTTTGTGTGTGC+AGG - chr4_1:73301766-73301785 Msa0570880:intron 45.0%
TAACAACTGCCATGCAGCAT+AGG + chr4_1:73301865-73301884 None:intergenic 45.0%
TGGAAGCCCATCATCAGAAT+CGG + chr4_1:73301921-73301940 None:intergenic 45.0%
TTGATTCCAGTATCGCAGCA+CGG + chr4_1:73302039-73302058 None:intergenic 45.0%
CTGCGATACTGGAATCAACA+TGG - chr4_1:73302041-73302060 Msa0570880:intron 45.0%
AGCTGAGATATGCATCACCT+TGG - chr4_1:73302104-73302123 Msa0570880:intron 45.0%
GCTGAGATATGCATCACCTT+GGG - chr4_1:73302105-73302124 Msa0570880:intron 45.0%
CTTGGGTGGTGAATTGTTTC+CGG - chr4_1:73302122-73302141 Msa0570880:intron 45.0%
!! ACAATAAAATAAAATTAAAA+TGG - chr4_1:73298935-73298954 Msa0570880:intron 5.0%
GGCTGGATTGAGCATGATTG+GGG + chr4_1:73298105-73298124 None:intergenic 50.0%
CGGCTGGATTGAGCATGATT+GGG + chr4_1:73298106-73298125 None:intergenic 50.0%
TCGGCTGGATTGAGCATGAT+TGG + chr4_1:73298107-73298126 None:intergenic 50.0%
GGAGATACTCTTAGAGGAGG+AGG + chr4_1:73298530-73298549 None:intergenic 50.0%
GTGAGTGGGCATAGTGGTTA+CGG + chr4_1:73298586-73298605 None:intergenic 50.0%
! TCTAGAGTGAGTGGGCATAG+TGG + chr4_1:73298592-73298611 None:intergenic 50.0%
ACTATGCCCACTCACTCTAG+AGG - chr4_1:73298591-73298610 Msa0570880:intron 50.0%
GCGGTGATGTATACAGTGGT+AGG + chr4_1:73298625-73298644 None:intergenic 50.0%
TTCGGCGGTGATGTATACAG+TGG + chr4_1:73298629-73298648 None:intergenic 50.0%
TGTCATTGGGCTGTTGACAC+AGG - chr4_1:73298669-73298688 Msa0570880:intron 50.0%
! GGGCTGTTGACACAGGATTT+TGG - chr4_1:73298676-73298695 Msa0570880:intron 50.0%
CAGTCTTGAAAGCTTGCGTC+CGG + chr4_1:73298725-73298744 None:intergenic 50.0%
GGACGCAAGCTTTCAAGACT+GGG - chr4_1:73298724-73298743 Msa0570880:intron 50.0%
CATGTTGCCTTGCCCTCAAA+AGG + chr4_1:73299234-73299253 None:intergenic 50.0%
GCACAGCGCAACTTCACAAA+AGG + chr4_1:73300011-73300030 None:intergenic 50.0%
CATGTCCGCTATTGACAACC+TGG + chr4_1:73300126-73300145 None:intergenic 50.0%
!! CAGGTTGTCAATAGCGGACA+TGG - chr4_1:73300124-73300143 Msa0570880:intron 50.0%
GTACCACTATTGCAGCGGTT+TGG - chr4_1:73300146-73300165 Msa0570880:intron 50.0%
AAGCCAAACCGCTGCAATAG+TGG + chr4_1:73300152-73300171 None:intergenic 50.0%
!! TATTGCAGCGGTTTGGCTTG+TGG - chr4_1:73300153-73300172 Msa0570880:intron 50.0%
GATTGAGGCAACCCTAAACG+AGG + chr4_1:73300263-73300282 None:intergenic 50.0%
GCTATCTTGTGTAGAGGCCT+TGG - chr4_1:73300364-73300383 Msa0570880:CDS 50.0%
AGGGGCTAATCAGGAGCTAA+TGG + chr4_1:73301256-73301275 None:intergenic 50.0%
GTGAAACCACTGCGAACTCA+AGG - chr4_1:73301365-73301384 Msa0570880:intron 50.0%
ATGGGCTTCCACCTCTTGAA+AGG - chr4_1:73301930-73301949 Msa0570880:intron 50.0%
GAGATATGCATCACCTTGGG+TGG - chr4_1:73302108-73302127 Msa0570880:intron 50.0%
CGGAAACAATTCACCACCCA+AGG + chr4_1:73302124-73302143 None:intergenic 50.0%
GAACATCAAGGCCTTGCAGA+GGG + chr4_1:73302218-73302237 None:intergenic 50.0%
TGAACATCAAGGCCTTGCAG+AGG + chr4_1:73302219-73302238 None:intergenic 50.0%
! TGAGAGTTGGTTGTGTCGGC+TGG + chr4_1:73298122-73298141 None:intergenic 55.0%
! CTTGCGTCCGGTGCACTTTT+TGG + chr4_1:73298713-73298732 None:intergenic 55.0%
CGGACGCAAGCTTTCAAGAC+TGG - chr4_1:73298723-73298742 Msa0570880:intron 55.0%
!! GAGGAAGCCTTTTGAGGGCA+AGG - chr4_1:73299224-73299243 Msa0570880:intron 55.0%
! TGGCTGTTGTGGATTGCTCG+TGG - chr4_1:73299967-73299986 Msa0570880:intron 55.0%
! GGCTGTTGTGGATTGCTCGT+GGG - chr4_1:73299968-73299987 Msa0570880:intron 55.0%
! TGCAGTGCCATGGCTTGTAG+CGG - chr4_1:73300310-73300329 Msa0570880:intron 55.0%
ACAAGCGCGTCAGGTTCCAA+AGG - chr4_1:73301618-73301637 Msa0570880:intron 55.0%
CTCTAACCGTGCTGCGATAC+TGG - chr4_1:73302030-73302049 Msa0570880:intron 55.0%
!! CGGTTTGGCTTGTGGCCAAC+TGG - chr4_1:73300161-73300180 Msa0570880:intron 60.0%
GCCAACTGGCCGCTACTATC+TGG - chr4_1:73300175-73300194 Msa0570880:intron 60.0%
GCCAGATAGTAGCGGCCAGT+TGG + chr4_1:73300179-73300198 None:intergenic 60.0%
GGGTTTGCCGCTACAAGCCA+TGG + chr4_1:73300320-73300339 None:intergenic 60.0%
TTGGCTGTCACAAGCGCGTC+AGG - chr4_1:73301609-73301628 Msa0570880:intron 60.0%
GAGGGACTCTGGGTACCCTG+TGG + chr4_1:73300958-73300977 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 73298061 73302341 73298061 ID=Msa0570880;Name=Msa0570880
chr4_1 mRNA 73298061 73302341 73298061 ID=Msa0570880-mRNA-1;Parent=Msa0570880;Name=Msa0570880-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.57|0.62|1|0.57|0.62|8|341|271
chr4_1 exon 73298061 73298523 73298061 ID=Msa0570880-mRNA-1:exon:25172;Parent=Msa0570880-mRNA-1
chr4_1 exon 73298750 73298856 73298750 ID=Msa0570880-mRNA-1:exon:25171;Parent=Msa0570880-mRNA-1
chr4_1 exon 73299585 73299656 73299585 ID=Msa0570880-mRNA-1:exon:25170;Parent=Msa0570880-mRNA-1
chr4_1 exon 73299997 73300087 73299997 ID=Msa0570880-mRNA-1:exon:25169;Parent=Msa0570880-mRNA-1
chr4_1 exon 73300358 73300494 73300358 ID=Msa0570880-mRNA-1:exon:25168;Parent=Msa0570880-mRNA-1
chr4_1 exon 73300729 73300769 73300729 ID=Msa0570880-mRNA-1:exon:25167;Parent=Msa0570880-mRNA-1
chr4_1 exon 73301657 73301711 73301657 ID=Msa0570880-mRNA-1:exon:25166;Parent=Msa0570880-mRNA-1
chr4_1 exon 73302151 73302341 73302151 ID=Msa0570880-mRNA-1:exon:25165;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73302151 73302341 73302151 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73301657 73301711 73301657 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73300729 73300769 73300729 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73300358 73300494 73300358 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73299997 73300087 73299997 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73299585 73299656 73299585 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73298750 73298856 73298750 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 CDS 73298402 73298523 73298402 ID=Msa0570880-mRNA-1:cds;Parent=Msa0570880-mRNA-1
chr4_1 three_prime_UTR 73298061 73298401 73298061 ID=Msa0570880-mRNA-1:three_prime_utr;Parent=Msa0570880-mRNA-1
Gene Sequence

>Msa0570880

ATGGGTGGTAATAACAGACAACACAGATTCAGAAATCATCGCCCCAATCATGCTCAATCCAGCCGACACAACCAACTCTCACTAGACAACGAAAATCAAAGCTGCGTTCAAGGTTCGTTCATCACTCTTCAATTCATTTACTATTTTATTTGTTGTTTTTCTTTCAAATTATCTTTCAAATTATATGACTTGATTTTGGGCAATGTGATGCCAAAAAGTGCACCGGACGCAAGCTTTCAAGACTGGGAGTTACGTGTGACTAATGGTTTTGGGGGAATTGCTTTAAGTCCAGTTGGAAAGCAATGTGTCTCCAGAGAAGATTACTCTTTAATCCAGAATAAAGGATTGGCTGTTGTGGATTGCTCGTGGGCACGCTTAGATGACGTGCCTTTTGTGAAGTTGCGCTGTGCTGCTCCTCGCCTCTTGCCATGGCTTGTAGCGGCAAACCCAATAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCCTTGGCTGCTGCTTTGACAATATGTGGAGAAGAAGAAACAGCAAATCTGTTGCTTGGCAAGTTTAACTGGGGTCACGCTTTTTCATCTCTGAATAAGGAATTACTGAAGGCCTATTCTAAATGCCAAAACAGTGCTGAAATTATTTCTGTTCAAAATGATTGGCTGTCACAAGCGCGTCAGGTTCCAAAGGCTCCTACTGATATTGTTAAGCAAGAAAATGAAGATAATGATCAAAACTCTTCCGATTCTGATGATGGGCTTCCACCTCTTGAAAGGAACATGAATCATTTGACCATAGACAATAGTGATGAAGAGAGTGAGTAG

Protein sequence

>Msa0570880

MGGNNRQHRFRNHRPNHAQSSRHNQLSLDNENQSCVQGSFITLQFIYYFICCFSFKLSFKLYDLILGNVMPKSAPDASFQDWELRVTNGFGGIALSPVGKQCVSREDYSLIQNKGLAVVDCSWARLDDVPFVKLRCAAPRLLPWLVAANPINYGRPCQLSCVEALAAALTICGEEETANLLLGKFNWGHAFSSLNKELLKAYSKCQNSAEIISVQNDWLSQARQVPKAPTDIVKQENEDNDQNSSDSDDGLPPLERNMNHLTIDNSDEESE*