Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570410 | PNX96111.1 | 27.603 | 605 | 352 | 20 | 21 | 564 | 14 | 593 | 1.08e-44 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570410 | A0A2K3MZ83 | 27.603 | 605 | 352 | 20 | 21 | 564 | 14 | 593 | 5.13e-45 | 180 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0541680 | Msa0570410 | 0.828644 | 8.016652e-55 | -8.615850e-47 |
Msa0567670 | Msa0570410 | 0.855985 | 4.366434e-62 | -8.615850e-47 |
Msa0567690 | Msa0570410 | 0.827661 | 1.382752e-54 | -8.615850e-47 |
Msa0567710 | Msa0570410 | 0.816789 | 4.614309e-52 | -8.615850e-47 |
Msa0567910 | Msa0570410 | 0.845957 | 2.936568e-59 | -8.615850e-47 |
Msa0567960 | Msa0570410 | 0.837871 | 4.024614e-57 | -8.615850e-47 |
Msa0568000 | Msa0570410 | 0.816937 | 4.275317e-52 | -8.615850e-47 |
Msa0570150 | Msa0570410 | 0.847244 | 1.307077e-59 | -8.615850e-47 |
Msa0570210 | Msa0570410 | 0.898563 | 4.691731e-77 | -8.615850e-47 |
Msa0570280 | Msa0570410 | 0.897613 | 1.186839e-76 | -8.615850e-47 |
Msa0570300 | Msa0570410 | 0.841293 | 5.187179e-58 | -8.615850e-47 |
Msa0570360 | Msa0570410 | 0.921483 | 3.375920e-88 | -8.615850e-47 |
Msa0570370 | Msa0570410 | 0.892449 | 1.571177e-74 | -8.615850e-47 |
Msa0570380 | Msa0570410 | 0.943868 | 5.524880e-103 | -8.615850e-47 |
Msa0570410 | Msa0570720 | 0.842563 | 2.395262e-58 | -8.615850e-47 |
Msa0570410 | Msa0570730 | 0.886183 | 4.269551e-72 | -8.615850e-47 |
Msa0570410 | Msa0570800 | 0.860304 | 2.267671e-63 | -8.615850e-47 |
Msa0570410 | Msa0570820 | 0.851618 | 7.892987e-61 | -8.615850e-47 |
Msa0570410 | Msa0570840 | 0.824327 | 8.569436e-54 | -8.615850e-47 |
Msa0570410 | Msa0570880 | 0.817258 | 3.620138e-52 | -8.615850e-47 |
Msa0570410 | Msa0570910 | 0.993051 | 3.915076e-197 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0570410 | MtrunA17_Chr5g0429061 | 28.539 | 438 | 238 | 16 | 156 | 569 | 24 | 410 | 2.47e-29 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 125 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTCTCAACGTAATATTTA+TGG | 0.105745 | 4_1:-72568281 | None:intergenic |
TTAGGAGATGCTTGCTTTCT+TGG | 0.154349 | 4_1:+72569547 | Msa0570410:three_prime_UTR |
TGCGATGAATGAAGAAATTT+AGG | 0.154365 | 4_1:-72564980 | None:intergenic |
AAGACACCCATGATGTTAAA+TGG | 0.171851 | 4_1:+72568307 | Msa0570410:CDS |
GAGTCAAATCTACCTTAATA+TGG | 0.181160 | 4_1:-72568512 | None:intergenic |
ACAAGGATGAAATTATTCTT+AGG | 0.201552 | 4_1:+72567311 | Msa0570410:CDS |
CTATGGCAACAAATAGTATT+TGG | 0.202946 | 4_1:+72566564 | Msa0570410:CDS |
GATTCTTGTTAGAGCTATAT+TGG | 0.254725 | 4_1:+72566329 | Msa0570410:CDS |
CCATCTGAGAAGTCATCTTC+TGG | 0.268632 | 4_1:+72565798 | Msa0570410:CDS |
GGCTGATATGATTGCCTTAC+GGG | 0.274728 | 4_1:+72567168 | Msa0570410:CDS |
TTGCTTGATAGATAATATTA+AGG | 0.278418 | 4_1:+72566730 | Msa0570410:CDS |
CGCAAGCATATCACCAGTTT+AGG | 0.285754 | 4_1:+72567266 | Msa0570410:CDS |
TGATATCTGGATCCAACTTT+AGG | 0.286480 | 4_1:+72567146 | Msa0570410:CDS |
ATGCTTGCGCCTGAGCTTCC+TGG | 0.294504 | 4_1:-72567252 | None:intergenic |
GTGGCTCAGATATAAATTTC+AGG | 0.314692 | 4_1:-72566643 | None:intergenic |
AAGAAAAGTATACGCATAAT+AGG | 0.317147 | 4_1:-72566924 | None:intergenic |
ATGAAAAGATCTAGTTCATT+TGG | 0.329809 | 4_1:-72568591 | None:intergenic |
CTACATCATTGCCCATATTA+AGG | 0.331089 | 4_1:+72568500 | Msa0570410:CDS |
TGTGCTAGATTAACATTAAC+AGG | 0.334320 | 4_1:+72569805 | Msa0570410:three_prime_UTR |
GAATTCTTGAAGGGTAGTTT+TGG | 0.335164 | 4_1:-72566401 | None:intergenic |
GTAAAACAATGTTAGTTGTT+AGG | 0.338320 | 4_1:+72569529 | Msa0570410:three_prime_UTR |
CTTCTCAACGTAATATTTAT+GGG | 0.345810 | 4_1:-72568280 | None:intergenic |
GCGATGAATGAAGAAATTTA+GGG | 0.351932 | 4_1:-72564979 | None:intergenic |
ATGGATCCTGTCGTGATATC+TGG | 0.352751 | 4_1:+72567133 | Msa0570410:CDS |
ATCTTCTGGGATCTGTGTTA+TGG | 0.357242 | 4_1:+72565812 | Msa0570410:CDS |
AAAGATCTGAAAAGGAAAAT+CGG | 0.358497 | 4_1:+72568229 | Msa0570410:CDS |
TCAGTGAATGACAGGCTATA+AGG | 0.358850 | 4_1:-72569505 | None:intergenic |
TCAAATGAGGGAGCTGGAAT+TGG | 0.362836 | 4_1:+72566974 | Msa0570410:CDS |
GTACCCTAGGGATAGGAATA+TGG | 0.367679 | 4_1:-72569880 | None:intergenic |
GATATCTGGATCCAACTTTA+GGG | 0.374491 | 4_1:+72567147 | Msa0570410:CDS |
AAAGCAAGCTACCATCATTA+TGG | 0.375124 | 4_1:-72566052 | None:intergenic |
TTTCTTTCTTGAATTCTTGA+AGG | 0.376905 | 4_1:-72566411 | None:intergenic |
TATCTTACGTTTGATATTGA+AGG | 0.377191 | 4_1:+72569751 | Msa0570410:three_prime_UTR |
ATGAAGAAATTTAGGGTTAC+CGG | 0.377193 | 4_1:-72564972 | None:intergenic |
ATTCTTGTTAGAGCTATATT+GGG | 0.382722 | 4_1:+72566330 | Msa0570410:CDS |
CTCAAACCCTGACCTATCTA+TGG | 0.382846 | 4_1:+72566547 | Msa0570410:CDS |
CTCTAAGCTGGGACAAATCT+AGG | 0.383516 | 4_1:-72569476 | None:intergenic |
CAACTTCAGTGAAGAATAGA+AGG | 0.389396 | 4_1:+72568424 | Msa0570410:CDS |
TGAAAAGGAAAATCGGGATA+TGG | 0.390657 | 4_1:+72568236 | Msa0570410:CDS |
TAATTTCATCCTTGTCAAAC+AGG | 0.392595 | 4_1:-72567303 | None:intergenic |
CCAGCTCATCCTCCCTAAAC+TGG | 0.396368 | 4_1:-72567279 | None:intergenic |
CAAGGATGAAATTATTCTTA+GGG | 0.399877 | 4_1:+72567312 | Msa0570410:CDS |
TCTTCTGGGATCTGTGTTAT+GGG | 0.400484 | 4_1:+72565813 | Msa0570410:CDS |
TGCGAAGCACCAGGAAGCTC+AGG | 0.409838 | 4_1:+72567243 | Msa0570410:CDS |
TATGGCAACAAATAGTATTT+GGG | 0.412899 | 4_1:+72566565 | Msa0570410:CDS |
AGTCAAATCTACCTTAATAT+GGG | 0.417830 | 4_1:-72568511 | None:intergenic |
ATTCAAATTCAAGCTTATCC+TGG | 0.420175 | 4_1:+72566167 | Msa0570410:CDS |
GTGTTATGGGAAACTCTTCT+TGG | 0.420434 | 4_1:+72565826 | Msa0570410:CDS |
ATCTTCGTGCTCAAATGTTA+AGG | 0.424929 | 4_1:-72566093 | None:intergenic |
TAAGGTAGATTTGACTCAAA+AGG | 0.428974 | 4_1:+72568518 | Msa0570410:CDS |
CAGTGAATGACAGGCTATAA+GGG | 0.431361 | 4_1:-72569504 | None:intergenic |
GCTTTCTTGGTGGAAAGGAT+TGG | 0.431676 | 4_1:+72569560 | Msa0570410:three_prime_UTR |
GCTCTAACAAGAATCCTCTA+TGG | 0.433675 | 4_1:-72566321 | None:intergenic |
TTTGTTGCCATAGATAGGTC+AGG | 0.434803 | 4_1:-72566554 | None:intergenic |
GGCATGCTTCTCAGCATCTC+TGG | 0.443123 | 4_1:-72568259 | None:intergenic |
GATTTGCCCATTTAACATCA+TGG | 0.446315 | 4_1:-72568314 | None:intergenic |
TCAGTTGTTGATGATAAGAA+TGG | 0.456667 | 4_1:+72565990 | Msa0570410:CDS |
AGACACCCATGATGTTAAAT+GGG | 0.460002 | 4_1:+72568308 | Msa0570410:CDS |
TGGTAACGATGAAAGGTAGA+AGG | 0.461927 | 4_1:-72566301 | None:intergenic |
ACCTTTCATCGTTACCATAG+AGG | 0.464119 | 4_1:+72566307 | Msa0570410:CDS |
CATCTGAGAAGTCATCTTCT+GGG | 0.468349 | 4_1:+72565799 | Msa0570410:CDS |
GGTAGTTTCTTTGGGGAGGG+TGG | 0.470019 | 4_1:-72566662 | None:intergenic |
AGACTGGAATGCACCGCAGC+CGG | 0.471238 | 4_1:-72566873 | None:intergenic |
ATAAGGGATGAGCTCTAAGC+TGG | 0.471240 | 4_1:-72569488 | None:intergenic |
GGGCTGATATGATTGCCTTA+CGG | 0.472172 | 4_1:+72567167 | Msa0570410:CDS |
CCAGTTTAGGGAGGATGAGC+TGG | 0.472388 | 4_1:+72567279 | Msa0570410:CDS |
AGGTAGAAGGATCACCATAA+AGG | 0.473131 | 4_1:-72566288 | None:intergenic |
TGCTTGCTTTCTTGGTGGAA+AGG | 0.482167 | 4_1:+72569555 | Msa0570410:three_prime_UTR |
GGAGATGCTTGCTTTCTTGG+TGG | 0.482968 | 4_1:+72569550 | Msa0570410:three_prime_UTR |
TACTATTTGTTGCCATAGAT+AGG | 0.484330 | 4_1:-72566559 | None:intergenic |
CCCTCATTTGAAGTAATGTC+AGG | 0.486972 | 4_1:-72566962 | None:intergenic |
GATTCTTGAAAGATCTGAAA+AGG | 0.488280 | 4_1:+72568221 | Msa0570410:CDS |
GCAAGCATATCACCAGTTTA+GGG | 0.488661 | 4_1:+72567267 | Msa0570410:CDS |
ATTTGCCCATTTAACATCAT+GGG | 0.494953 | 4_1:-72568313 | None:intergenic |
AAGATCTGAAAAGGAAAATC+GGG | 0.495572 | 4_1:+72568230 | Msa0570410:CDS |
AGTAAGGAGAAGCGTGTGAC+AGG | 0.499793 | 4_1:+72568618 | Msa0570410:CDS |
CAGCTGTTGATGGCCGGCTG+CGG | 0.502306 | 4_1:+72566860 | Msa0570410:CDS |
AGGGCGCAGTATGAACTTGC+TGG | 0.503546 | 4_1:+72568462 | Msa0570410:CDS |
TCTGCAGTTAACCATAATGA+TGG | 0.506385 | 4_1:+72566041 | Msa0570410:CDS |
ATTGCCGCGATTGTTTATGC+TGG | 0.506930 | 4_1:+72566620 | Msa0570410:CDS |
TGATGTTGGCATGAGAATCA+TGG | 0.510178 | 4_1:+72569642 | Msa0570410:three_prime_UTR |
TCCTCTATGGTAACGATGAA+AGG | 0.510188 | 4_1:-72566308 | None:intergenic |
CACCTTGCTACCCTTGCTCC+AGG | 0.511952 | 4_1:-72566185 | None:intergenic |
TTCTTTCTTGAATTCTTGAA+GGG | 0.514443 | 4_1:-72566410 | None:intergenic |
ACCTGACATTACTTCAAATG+AGG | 0.517714 | 4_1:+72566961 | Msa0570410:CDS |
ACGTTTGATATTGAAGGCTA+CGG | 0.522131 | 4_1:+72569757 | Msa0570410:three_prime_UTR |
CCAGAAGATGACTTCTCAGA+TGG | 0.523618 | 4_1:-72565798 | None:intergenic |
TGAGCCAAAGGAAGGTCATA+CGG | 0.524010 | 4_1:+72568377 | Msa0570410:intron |
GAATCACAGCTGTTGATGGC+CGG | 0.524635 | 4_1:+72566854 | Msa0570410:CDS |
AATAGGTAGTTTCTTTGGGG+AGG | 0.526238 | 4_1:-72566666 | None:intergenic |
ATAGGTAGTTTCTTTGGGGA+GGG | 0.526659 | 4_1:-72566665 | None:intergenic |
AATCATGGCTTTCTGCATGT+TGG | 0.530486 | 4_1:+72569657 | Msa0570410:three_prime_UTR |
ATTACTTCAAATGAGGGAGC+TGG | 0.531617 | 4_1:+72566968 | Msa0570410:CDS |
GCAGTATGAACTTGCTGGAA+AGG | 0.534391 | 4_1:+72568467 | Msa0570410:CDS |
TCACGAGTCAGTGATTTGCT+TGG | 0.538830 | 4_1:+72565773 | Msa0570410:CDS |
AATCATGATGGTAGAGATCA+AGG | 0.544381 | 4_1:+72568333 | Msa0570410:CDS |
GAACTTGCTGGAAAGGCTGC+TGG | 0.549202 | 4_1:+72568474 | Msa0570410:CDS |
GGAATCATACAAAATTCGTA+TGG | 0.554540 | 4_1:+72567114 | Msa0570410:CDS |
TTCAAGCTTATCCTGGAGCA+AGG | 0.559481 | 4_1:+72566174 | Msa0570410:CDS |
AATGATCTCTGCGAAGCACC+AGG | 0.560183 | 4_1:+72567234 | Msa0570410:CDS |
CTTGTCGAGATCGTCCCGTA+AGG | 0.561798 | 4_1:-72567182 | None:intergenic |
GAGCCAAAGGAAGGTCATAC+GGG | 0.565166 | 4_1:+72568378 | Msa0570410:intron |
AATCATATCAGCCCTAAAGT+TGG | 0.571436 | 4_1:-72567158 | None:intergenic |
TTGTTGCCATAGATAGGTCA+GGG | 0.572061 | 4_1:-72566553 | None:intergenic |
AATAATCAACTTAATTGTGA+TGG | 0.572786 | 4_1:+72566818 | Msa0570410:CDS |
TTGGATCCAGATATCACGAC+AGG | 0.581700 | 4_1:-72567139 | None:intergenic |
ATATTGGGTTAATAAGAGAC+TGG | 0.584755 | 4_1:+72566345 | Msa0570410:CDS |
GATGATGATAGTAAACGTAA+AGG | 0.586994 | 4_1:+72565577 | Msa0570410:CDS |
ATCCTGGAGCAAGGGTAGCA+AGG | 0.587922 | 4_1:+72566183 | Msa0570410:CDS |
CGGGACGATCTCGACAAGAA+CGG | 0.588857 | 4_1:+72567187 | Msa0570410:CDS |
AATAATAGCATCTGAACAGA+CGG | 0.589428 | 4_1:-72566018 | None:intergenic |
CGATCATCAGCAAAATCAAG+AGG | 0.590757 | 4_1:-72565732 | None:intergenic |
TAAAACTACTTCAGAAGCAG+AGG | 0.614916 | 4_1:+72567054 | Msa0570410:CDS |
AATAATACAGTGTTCACAGT+AGG | 0.616836 | 4_1:-72566600 | None:intergenic |
CCTGACATTACTTCAAATGA+GGG | 0.618975 | 4_1:+72566962 | Msa0570410:CDS |
AATTACAGATATTCCAGTGA+CGG | 0.621656 | 4_1:+72565951 | Msa0570410:CDS |
GATGGTAGAGATCAAGGCCA+TGG | 0.624513 | 4_1:+72568339 | Msa0570410:CDS |
TGAATTTGTTGCAGTCCCGA+TGG | 0.625515 | 4_1:+72568717 | Msa0570410:intron |
GTTAAATGGGCAAATCATGA+TGG | 0.627611 | 4_1:+72568321 | Msa0570410:CDS |
TCAAGCTTATCCTGGAGCAA+GGG | 0.628958 | 4_1:+72566175 | Msa0570410:CDS |
TAAGGGATGAGCTCTAAGCT+GGG | 0.639362 | 4_1:-72569487 | None:intergenic |
GGCAACAAATAGTATTTGGG+AGG | 0.647588 | 4_1:+72566568 | Msa0570410:CDS |
AGCATATCACCAGTTTAGGG+AGG | 0.671078 | 4_1:+72567270 | Msa0570410:CDS |
CAGGCCAGCATAAACAATCG+CGG | 0.692749 | 4_1:-72566624 | None:intergenic |
TGAGCTGGACCTGTTTGACA+AGG | 0.731803 | 4_1:+72567294 | Msa0570410:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACATAAACAAAAAAAAAAA+AGG | - | chr4_1:72568189-72568208 | None:intergenic | 10.0% |
!! | AATTCAAGAAAGAAAAAAAA+TGG | + | chr4_1:72566419-72566438 | Msa0570410:CDS | 15.0% |
!! | AGAATGTCAATTTAAATATA+AGG | + | chr4_1:72568052-72568071 | Msa0570410:intron | 15.0% |
!! | AATTTGAACAAAAGAAATTT+AGG | + | chr4_1:72568107-72568126 | Msa0570410:intron | 15.0% |
!!! | TATTTCATGTCAAATTTTTT+CGG | - | chr4_1:72568939-72568958 | None:intergenic | 15.0% |
!!! | TATTTGTCTTTTTAGTAATT+AGG | + | chr4_1:72569018-72569037 | Msa0570410:intron | 15.0% |
!!! | TATTTTGAATCAAATAAAAG+AGG | + | chr4_1:72569840-72569859 | Msa0570410:three_prime_UTR | 15.0% |
!!! | ATTTTGAATCAAATAAAAGA+GGG | + | chr4_1:72569841-72569860 | Msa0570410:three_prime_UTR | 15.0% |
!! | NNNNNNNNNNCTTAGTCTCA+TGG | + | chr4_1:72565549-72565568 | Msa0570410:intron | 20.0% |
!!! | GAAATTTTTAGTTTTAGTGA+CGG | + | chr4_1:72565668-72565687 | Msa0570410:intron | 20.0% |
!!! | TATTTGTTAAATATATGTGC+AGG | + | chr4_1:72566516-72566535 | Msa0570410:intron | 20.0% |
!!! | TCACTTTTTTTGACAAAAAT+AGG | - | chr4_1:72566686-72566705 | None:intergenic | 20.0% |
!! | TTGCTTGATAGATAATATTA+AGG | + | chr4_1:72566730-72566749 | Msa0570410:CDS | 20.0% |
!! | AATAATCAACTTAATTGTGA+TGG | + | chr4_1:72566818-72566837 | Msa0570410:CDS | 20.0% |
!!! | CTTTTTATCTCATTAATAGA+AGG | + | chr4_1:72567392-72567411 | Msa0570410:intron | 20.0% |
!! | TTTGTTAAAATTACTTGCAA+TGG | - | chr4_1:72567713-72567732 | None:intergenic | 20.0% |
!! | AAATTAGAGGTTAAAAATGT+TGG | - | chr4_1:72567776-72567795 | None:intergenic | 20.0% |
!! | TGAGATATAATTCAAATTAG+AGG | - | chr4_1:72567789-72567808 | None:intergenic | 20.0% |
!!! | AAATGATTTTCTTTGCAATT+TGG | - | chr4_1:72567822-72567841 | None:intergenic | 20.0% |
!!! | ATTGCAAAGAAAATCATTTT+AGG | + | chr4_1:72567823-72567842 | Msa0570410:intron | 20.0% |
!!! | TTGCAAAGAAAATCATTTTA+GGG | + | chr4_1:72567824-72567843 | Msa0570410:intron | 20.0% |
!!! | ATAATGTGTTTTGTATGATT+TGG | - | chr4_1:72568142-72568161 | None:intergenic | 20.0% |
!!! | TGTTTTTAACATTCTTCAAA+GGG | - | chr4_1:72568764-72568783 | None:intergenic | 20.0% |
!!! | TTGTTTTTAACATTCTTCAA+AGG | - | chr4_1:72568765-72568784 | None:intergenic | 20.0% |
!! | TGATAATCTTTATTAGTAAG+TGG | + | chr4_1:72568790-72568809 | Msa0570410:intron | 20.0% |
!! | ATACTAAATAGCAAAATAGA+AGG | - | chr4_1:72568825-72568844 | None:intergenic | 20.0% |
!! | TAGATATGTCTGATAATATT+TGG | + | chr4_1:72568866-72568885 | Msa0570410:intron | 20.0% |
!!! | ATTTCATGTCAAATTTTTTC+GGG | - | chr4_1:72568938-72568957 | None:intergenic | 20.0% |
!! | CTGTATAAACAAAAAAAGAA+GGG | - | chr4_1:72569065-72569084 | None:intergenic | 20.0% |
!! | TCTGTATAAACAAAAAAAGA+AGG | - | chr4_1:72569066-72569085 | None:intergenic | 20.0% |
!!! | ATAACGTAAATAGCTTTAAA+GGG | - | chr4_1:72569122-72569141 | None:intergenic | 20.0% |
!!! | AATAACGTAAATAGCTTTAA+AGG | - | chr4_1:72569123-72569142 | None:intergenic | 20.0% |
!! | ATTTACGTTATTCTGTATTA+TGG | + | chr4_1:72569131-72569150 | Msa0570410:intron | 20.0% |
!! | TTTACGTTATTCTGTATTAT+GGG | + | chr4_1:72569132-72569151 | Msa0570410:intron | 20.0% |
!! | TGAATAAAAAAACTTTCTTC+AGG | - | chr4_1:72569703-72569722 | None:intergenic | 20.0% |
! | TTAAAAAAGCAATGGTCAAA+AGG | + | chr4_1:72564932-72564951 | Msa0570410:five_prime_UTR | 25.0% |
! | CAAAAGGTAAATGTGAAAAA+AGG | + | chr4_1:72564948-72564967 | Msa0570410:five_prime_UTR | 25.0% |
! | AATCAAATGAAGTAACTAAG+AGG | - | chr4_1:72565866-72565885 | None:intergenic | 25.0% |
!!! | TGATTTTATTTGGAATTTGC+AGG | + | chr4_1:72565928-72565947 | Msa0570410:intron | 25.0% |
!!! | TTTTTTATGAACAGCCTTTA+TGG | + | chr4_1:72566274-72566293 | Msa0570410:intron | 25.0% |
! | ATTCTTGTTAGAGCTATATT+GGG | + | chr4_1:72566330-72566349 | Msa0570410:CDS | 25.0% |
! | TTCTTTCTTGAATTCTTGAA+GGG | - | chr4_1:72566413-72566432 | None:intergenic | 25.0% |
! | TTTCTTTCTTGAATTCTTGA+AGG | - | chr4_1:72566414-72566433 | None:intergenic | 25.0% |
!!! | ATCTTCTATCTAGTTTTCTA+TGG | + | chr4_1:72566482-72566501 | Msa0570410:intron | 25.0% |
! | TATGGCAACAAATAGTATTT+GGG | + | chr4_1:72566565-72566584 | Msa0570410:CDS | 25.0% |
! | AAAAATAGGTAGTTTCTTTG+GGG | - | chr4_1:72566672-72566691 | None:intergenic | 25.0% |
! | CAAAAATAGGTAGTTTCTTT+GGG | - | chr4_1:72566673-72566692 | None:intergenic | 25.0% |
! | ACAAAAATAGGTAGTTTCTT+TGG | - | chr4_1:72566674-72566693 | None:intergenic | 25.0% |
!! | AAGAAAAGTATACGCATAAT+AGG | - | chr4_1:72566927-72566946 | None:intergenic | 25.0% |
!! | GAATGTGATTTTACAAACAA+CGG | + | chr4_1:72567022-72567041 | Msa0570410:CDS | 25.0% |
! | ACAAGGATGAAATTATTCTT+AGG | + | chr4_1:72567311-72567330 | Msa0570410:CDS | 25.0% |
! | CAAGGATGAAATTATTCTTA+GGG | + | chr4_1:72567312-72567331 | Msa0570410:CDS | 25.0% |
!! | CTTTTCATTCTTAAAGATAG+AGG | - | chr4_1:72567420-72567439 | None:intergenic | 25.0% |
!! | GCAAACACATATCATAATTT+TGG | + | chr4_1:72567467-72567486 | Msa0570410:intron | 25.0% |
! | TTCAAACATCTTAACTAACT+TGG | + | chr4_1:72567673-72567692 | Msa0570410:intron | 25.0% |
! | TATAAACTCAGATTGTAGTT+AGG | - | chr4_1:72567736-72567755 | None:intergenic | 25.0% |
!!! | ATTTTAGGGTGTTAATTAGA+TGG | + | chr4_1:72567838-72567857 | Msa0570410:intron | 25.0% |
! | ATAGTATAGGAAAGCTATAA+TGG | - | chr4_1:72567880-72567899 | None:intergenic | 25.0% |
! | ACTATGCTCAAAAATAGTAT+AGG | - | chr4_1:72567893-72567912 | None:intergenic | 25.0% |
! | TTGGCATAACAATCAAATAA+TGG | - | chr4_1:72567949-72567968 | None:intergenic | 25.0% |
! | AAAGATCTGAAAAGGAAAAT+CGG | + | chr4_1:72568229-72568248 | Msa0570410:CDS | 25.0% |
! | CTTCTCAACGTAATATTTAT+GGG | - | chr4_1:72568283-72568302 | None:intergenic | 25.0% |
! | ACTTCTCAACGTAATATTTA+TGG | - | chr4_1:72568284-72568303 | None:intergenic | 25.0% |
!!! | AAGGCATTTTAAATTTAGCA+GGG | + | chr4_1:72568443-72568462 | Msa0570410:CDS | 25.0% |
! | AGTCAAATCTACCTTAATAT+GGG | - | chr4_1:72568514-72568533 | None:intergenic | 25.0% |
!! | ATGAAAAGATCTAGTTCATT+TGG | - | chr4_1:72568594-72568613 | None:intergenic | 25.0% |
!! | AGATCTTTTCATGTATAGTA+AGG | + | chr4_1:72568602-72568621 | Msa0570410:CDS | 25.0% |
!!! | TTTCATGTCAAATTTTTTCG+GGG | - | chr4_1:72568937-72568956 | None:intergenic | 25.0% |
! | GATTGTTAAATAACTTGAAC+CGG | + | chr4_1:72569230-72569249 | Msa0570410:intron | 25.0% |
! | AATATTCAAACTGAAAGAGA+GGG | - | chr4_1:72569331-72569350 | None:intergenic | 25.0% |
! | AAATATTCAAACTGAAAGAG+AGG | - | chr4_1:72569332-72569351 | None:intergenic | 25.0% |
!!! | TCGTTCTTATTTCTAATTAC+AGG | + | chr4_1:72569422-72569441 | Msa0570410:intron | 25.0% |
!!! | TCTTATTTCTAATTACAGGA+AGG | + | chr4_1:72569426-72569445 | Msa0570410:intron | 25.0% |
! | GTAAAACAATGTTAGTTGTT+AGG | + | chr4_1:72569529-72569548 | Msa0570410:three_prime_UTR | 25.0% |
!!! | CTTGATTATGTTTTTGATGT+TGG | + | chr4_1:72569628-72569647 | Msa0570410:three_prime_UTR | 25.0% |
!!! | TTCATTTTAGTTTGCATGTT+TGG | + | chr4_1:72569719-72569738 | Msa0570410:three_prime_UTR | 25.0% |
!!! | TCATTTTAGTTTGCATGTTT+GGG | + | chr4_1:72569720-72569739 | Msa0570410:three_prime_UTR | 25.0% |
! | TATCTTACGTTTGATATTGA+AGG | + | chr4_1:72569751-72569770 | Msa0570410:three_prime_UTR | 25.0% |
! | ATGAAGAAATTTAGGGTTAC+CGG | - | chr4_1:72564975-72564994 | None:intergenic | 30.0% |
GCGATGAATGAAGAAATTTA+GGG | - | chr4_1:72564982-72565001 | None:intergenic | 30.0% | |
TGCGATGAATGAAGAAATTT+AGG | - | chr4_1:72564983-72565002 | None:intergenic | 30.0% | |
TAGTATTTATAGCCTGCTAT+GGG | - | chr4_1:72565318-72565337 | None:intergenic | 30.0% | |
TAAGGAATACTAGGATTCTA+GGG | - | chr4_1:72565382-72565401 | None:intergenic | 30.0% | |
AACTGTACTTGCAAAAAGTA+CGG | - | chr4_1:72565405-72565424 | None:intergenic | 30.0% | |
GATGATGATAGTAAACGTAA+AGG | + | chr4_1:72565577-72565596 | Msa0570410:CDS | 30.0% | |
AATTACAGATATTCCAGTGA+CGG | + | chr4_1:72565951-72565970 | Msa0570410:CDS | 30.0% | |
!! | TCAGTTGTTGATGATAAGAA+TGG | + | chr4_1:72565990-72566009 | Msa0570410:CDS | 30.0% |
AATAATAGCATCTGAACAGA+CGG | - | chr4_1:72566021-72566040 | None:intergenic | 30.0% | |
ATTCAAATTCAAGCTTATCC+TGG | + | chr4_1:72566167-72566186 | Msa0570410:CDS | 30.0% | |
ACACAAACCTACCTTATTAT+GGG | + | chr4_1:72566225-72566244 | Msa0570410:intron | 30.0% | |
GATTCTTGTTAGAGCTATAT+TGG | + | chr4_1:72566329-72566348 | Msa0570410:CDS | 30.0% | |
ATATTGGGTTAATAAGAGAC+TGG | + | chr4_1:72566345-72566364 | Msa0570410:CDS | 30.0% | |
! | TACTATTTGTTGCCATAGAT+AGG | - | chr4_1:72566562-72566581 | None:intergenic | 30.0% |
CTATGGCAACAAATAGTATT+TGG | + | chr4_1:72566564-72566583 | Msa0570410:CDS | 30.0% | |
AATAATACAGTGTTCACAGT+AGG | - | chr4_1:72566603-72566622 | None:intergenic | 30.0% | |
CAGTACATAGAAAATAAGAC+TGG | - | chr4_1:72566892-72566911 | None:intergenic | 30.0% | |
!!! | ATGTTTTGAAAAAAGAGCTG+AGG | + | chr4_1:72567093-72567112 | Msa0570410:CDS | 30.0% |
GGAATCATACAAAATTCGTA+TGG | + | chr4_1:72567114-72567133 | Msa0570410:CDS | 30.0% | |
TAATTTCATCCTTGTCAAAC+AGG | - | chr4_1:72567306-72567325 | None:intergenic | 30.0% | |
CCATTGATATTACATGACTA+AGG | - | chr4_1:72567531-72567550 | None:intergenic | 30.0% | |
CCTTAGTCATGTAATATCAA+TGG | + | chr4_1:72567528-72567547 | Msa0570410:intron | 30.0% | |
CATGCTTCAATAAACCAATT+TGG | - | chr4_1:72567605-72567624 | None:intergenic | 30.0% | |
! | CAAATTGGTTTATTGAAGCA+TGG | + | chr4_1:72567603-72567622 | Msa0570410:intron | 30.0% |
TTGAAGCACAAACAACTAAA+CGG | - | chr4_1:72567658-72567677 | None:intergenic | 30.0% | |
!! | TATTTTTGAGCATAGTGTGA+TGG | + | chr4_1:72567897-72567916 | Msa0570410:intron | 30.0% |
CAAGCACTAATAATTGAGTT+TGG | - | chr4_1:72567968-72567987 | None:intergenic | 30.0% | |
ACTCAATTATTAGTGCTTGA+AGG | + | chr4_1:72567969-72567988 | Msa0570410:intron | 30.0% | |
GATTCTTGAAAGATCTGAAA+AGG | + | chr4_1:72568221-72568240 | Msa0570410:CDS | 30.0% | |
AAGATCTGAAAAGGAAAATC+GGG | + | chr4_1:72568230-72568249 | Msa0570410:CDS | 30.0% | |
ATTTGCCCATTTAACATCAT+GGG | - | chr4_1:72568316-72568335 | None:intergenic | 30.0% | |
!!! | GAAGGCATTTTAAATTTAGC+AGG | + | chr4_1:72568442-72568461 | Msa0570410:CDS | 30.0% |
GAGTCAAATCTACCTTAATA+TGG | - | chr4_1:72568515-72568534 | None:intergenic | 30.0% | |
TAAGGTAGATTTGACTCAAA+AGG | + | chr4_1:72568518-72568537 | Msa0570410:CDS | 30.0% | |
AGTTCATTTGGATCAAAAAC+AGG | - | chr4_1:72568582-72568601 | None:intergenic | 30.0% | |
ATATTCAAACTGAAAGAGAG+GGG | - | chr4_1:72569330-72569349 | None:intergenic | 30.0% | |
TGTGCTAGATTAACATTAAC+AGG | + | chr4_1:72569805-72569824 | Msa0570410:three_prime_UTR | 30.0% | |
GGTAAATGTGAAAAAAGGTC+CGG | + | chr4_1:72564953-72564972 | Msa0570410:five_prime_UTR | 35.0% | |
! | AGGTTTCTAGAAGCTTAGAA+GGG | - | chr4_1:72565231-72565250 | None:intergenic | 35.0% |
!! | GTATTTTAGGTGGTTTCTAG+AGG | - | chr4_1:72565251-72565270 | None:intergenic | 35.0% |
!! | GGGTATTTGTGTATTTTAGG+TGG | - | chr4_1:72565261-72565280 | None:intergenic | 35.0% |
!!! | CAGGGGTATTTGTGTATTTT+AGG | - | chr4_1:72565264-72565283 | None:intergenic | 35.0% |
GTAGTATTTATAGCCTGCTA+TGG | - | chr4_1:72565319-72565338 | None:intergenic | 35.0% | |
!! | TACTCTTGAGAGTATTCTCA+AGG | + | chr4_1:72565336-72565355 | Msa0570410:intron | 35.0% |
CTAGGGTTTAGACTGATTAT+TGG | - | chr4_1:72565365-72565384 | None:intergenic | 35.0% | |
GTAAGGAATACTAGGATTCT+AGG | - | chr4_1:72565383-72565402 | None:intergenic | 35.0% | |
AAAGTACGGTAAGGAATACT+AGG | - | chr4_1:72565391-72565410 | None:intergenic | 35.0% | |
! | TACTTGCAAAAAGTACGGTA+AGG | - | chr4_1:72565400-72565419 | None:intergenic | 35.0% |
!! | GTACTTTTTGCAAGTACAGT+TGG | + | chr4_1:72565404-72565423 | Msa0570410:intron | 35.0% |
!! | AGTAAACGTAAAGGTACTCT+TGG | + | chr4_1:72565586-72565605 | Msa0570410:intron | 35.0% |
GCAGAAACAGAAACAAACTT+GGG | - | chr4_1:72565614-72565633 | None:intergenic | 35.0% | |
TCTGCAGTTAACCATAATGA+TGG | + | chr4_1:72566041-72566060 | Msa0570410:CDS | 35.0% | |
AAAGCAAGCTACCATCATTA+TGG | - | chr4_1:72566055-72566074 | None:intergenic | 35.0% | |
ATCTTCGTGCTCAAATGTTA+AGG | - | chr4_1:72566096-72566115 | None:intergenic | 35.0% | |
!!! | AGCACGAAGATGTTTTAGTT+AGG | + | chr4_1:72566105-72566124 | Msa0570410:intron | 35.0% |
!!! | GCACGAAGATGTTTTAGTTA+GGG | + | chr4_1:72566106-72566125 | Msa0570410:intron | 35.0% |
!!! | GAAGATGTTTTAGTTAGGGA+AGG | + | chr4_1:72566110-72566129 | Msa0570410:intron | 35.0% |
TTTAGTTAGGGAAGGATTTG+TGG | + | chr4_1:72566118-72566137 | Msa0570410:intron | 35.0% | |
CACACAAACCTACCTTATTA+TGG | + | chr4_1:72566224-72566243 | Msa0570410:intron | 35.0% | |
! | GAATTCTTGAAGGGTAGTTT+TGG | - | chr4_1:72566404-72566423 | None:intergenic | 35.0% |
! | AAAATGGAAAGAGTACGTAC+TGG | + | chr4_1:72566435-72566454 | Msa0570410:intron | 35.0% |
GTGGCTCAGATATAAATTTC+AGG | - | chr4_1:72566646-72566665 | None:intergenic | 35.0% | |
! | TTTTGAATCACAGCTGTTGA+TGG | + | chr4_1:72566850-72566869 | Msa0570410:CDS | 35.0% |
ACCTGACATTACTTCAAATG+AGG | + | chr4_1:72566961-72566980 | Msa0570410:CDS | 35.0% | |
CCTGACATTACTTCAAATGA+GGG | + | chr4_1:72566962-72566981 | Msa0570410:CDS | 35.0% | |
! | TGTGATTTTACAAACAACGG+AGG | + | chr4_1:72567025-72567044 | Msa0570410:CDS | 35.0% |
! | GTGATTTTACAAACAACGGA+GGG | + | chr4_1:72567026-72567045 | Msa0570410:CDS | 35.0% |
! | TGATTTTACAAACAACGGAG+GGG | + | chr4_1:72567027-72567046 | Msa0570410:CDS | 35.0% |
TAAAACTACTTCAGAAGCAG+AGG | + | chr4_1:72567054-72567073 | Msa0570410:CDS | 35.0% | |
TGATATCTGGATCCAACTTT+AGG | + | chr4_1:72567146-72567165 | Msa0570410:CDS | 35.0% | |
GATATCTGGATCCAACTTTA+GGG | + | chr4_1:72567147-72567166 | Msa0570410:CDS | 35.0% | |
AATCATATCAGCCCTAAAGT+TGG | - | chr4_1:72567161-72567180 | None:intergenic | 35.0% | |
TATCAATGGAATGAGTGACA+TGG | + | chr4_1:72567542-72567561 | Msa0570410:intron | 35.0% | |
TTGCATAGCAAGTTCTTAGT+TGG | + | chr4_1:72567567-72567586 | Msa0570410:intron | 35.0% | |
GTTCTTAGTTGGAAATGTGA+TGG | + | chr4_1:72567578-72567597 | Msa0570410:intron | 35.0% | |
TGAAGCACAAACAACTAAAC+GGG | - | chr4_1:72567657-72567676 | None:intergenic | 35.0% | |
TGAAAAGGAAAATCGGGATA+TGG | + | chr4_1:72568236-72568255 | Msa0570410:CDS | 35.0% | |
AAGACACCCATGATGTTAAA+TGG | + | chr4_1:72568307-72568326 | Msa0570410:CDS | 35.0% | |
AGACACCCATGATGTTAAAT+GGG | + | chr4_1:72568308-72568327 | Msa0570410:CDS | 35.0% | |
GATTTGCCCATTTAACATCA+TGG | - | chr4_1:72568317-72568336 | None:intergenic | 35.0% | |
GTTAAATGGGCAAATCATGA+TGG | + | chr4_1:72568321-72568340 | Msa0570410:CDS | 35.0% | |
AATCATGATGGTAGAGATCA+AGG | + | chr4_1:72568333-72568352 | Msa0570410:CDS | 35.0% | |
CAACTTCAGTGAAGAATAGA+AGG | + | chr4_1:72568424-72568443 | Msa0570410:CDS | 35.0% | |
CTACATCATTGCCCATATTA+AGG | + | chr4_1:72568500-72568519 | Msa0570410:CDS | 35.0% | |
CAGATCAAACAGCTTGTATT+CGG | - | chr4_1:72568900-72568919 | None:intergenic | 35.0% | |
!! | CAACCACATGAATTTGTTAC+CGG | - | chr4_1:72569265-72569284 | None:intergenic | 35.0% |
TATTCAAACTGAAAGAGAGG+GGG | - | chr4_1:72569329-72569348 | None:intergenic | 35.0% | |
AATAAGAACGAATCGACATG+AGG | - | chr4_1:72569413-72569432 | None:intergenic | 35.0% | |
! | GTTTTACTTCAGTGAATGAC+AGG | - | chr4_1:72569516-72569535 | None:intergenic | 35.0% |
ACGTTTGATATTGAAGGCTA+CGG | + | chr4_1:72569757-72569776 | Msa0570410:three_prime_UTR | 35.0% | |
! | TTTCTAGAAGCTTAGAAGGG+CGG | - | chr4_1:72565228-72565247 | None:intergenic | 40.0% |
! | GAGGTTTCTAGAAGCTTAGA+AGG | - | chr4_1:72565232-72565251 | None:intergenic | 40.0% |
CGCAGAAACAGAAACAAACT+TGG | - | chr4_1:72565615-72565634 | None:intergenic | 40.0% | |
CGATCATCAGCAAAATCAAG+AGG | - | chr4_1:72565735-72565754 | None:intergenic | 40.0% | |
! | CTTGATTTTGCTGATGATCG+TGG | + | chr4_1:72565735-72565754 | Msa0570410:CDS | 40.0% |
CATCTGAGAAGTCATCTTCT+GGG | + | chr4_1:72565799-72565818 | Msa0570410:CDS | 40.0% | |
!! | ATCTTCTGGGATCTGTGTTA+TGG | + | chr4_1:72565812-72565831 | Msa0570410:CDS | 40.0% |
!! | TCTTCTGGGATCTGTGTTAT+GGG | + | chr4_1:72565813-72565832 | Msa0570410:CDS | 40.0% |
GTGTTATGGGAAACTCTTCT+TGG | + | chr4_1:72565826-72565845 | Msa0570410:CDS | 40.0% | |
!! | TTGCTTTTCTTCGAGGATTC+TGG | + | chr4_1:72566068-72566087 | Msa0570410:CDS | 40.0% |
AAGGATTTGTGGACAGGTTA+GGG | + | chr4_1:72566129-72566148 | Msa0570410:intron | 40.0% | |
TAAGGTAGGTTTGTGTGCTA+AGG | - | chr4_1:72566221-72566240 | None:intergenic | 40.0% | |
AGGTAGAAGGATCACCATAA+AGG | - | chr4_1:72566291-72566310 | None:intergenic | 40.0% | |
! | TGGTAACGATGAAAGGTAGA+AGG | - | chr4_1:72566304-72566323 | None:intergenic | 40.0% |
ACCTTTCATCGTTACCATAG+AGG | + | chr4_1:72566307-72566326 | Msa0570410:CDS | 40.0% | |
! | TCCTCTATGGTAACGATGAA+AGG | - | chr4_1:72566311-72566330 | None:intergenic | 40.0% |
GCTCTAACAAGAATCCTCTA+TGG | - | chr4_1:72566324-72566343 | None:intergenic | 40.0% | |
TTGTTGCCATAGATAGGTCA+GGG | - | chr4_1:72566556-72566575 | None:intergenic | 40.0% | |
TTTGTTGCCATAGATAGGTC+AGG | - | chr4_1:72566557-72566576 | None:intergenic | 40.0% | |
GGCAACAAATAGTATTTGGG+AGG | + | chr4_1:72566568-72566587 | Msa0570410:CDS | 40.0% | |
! | ATAGGTAGTTTCTTTGGGGA+GGG | - | chr4_1:72566668-72566687 | None:intergenic | 40.0% |
! | AATAGGTAGTTTCTTTGGGG+AGG | - | chr4_1:72566669-72566688 | None:intergenic | 40.0% |
TCACGTGATTCAAAACTGCA+AGG | + | chr4_1:72566758-72566777 | Msa0570410:intron | 40.0% | |
! | CCCTCATTTGAAGTAATGTC+AGG | - | chr4_1:72566965-72566984 | None:intergenic | 40.0% |
ATTACTTCAAATGAGGGAGC+TGG | + | chr4_1:72566968-72566987 | Msa0570410:CDS | 40.0% | |
AAGAACGGTAAATGCTTTCC+TGG | + | chr4_1:72567202-72567221 | Msa0570410:intron | 40.0% | |
GAGATCATTGCTCTTAAACC+AGG | - | chr4_1:72567223-72567242 | None:intergenic | 40.0% | |
GCAAGCATATCACCAGTTTA+GGG | + | chr4_1:72567267-72567286 | Msa0570410:CDS | 40.0% | |
!! | GGAAATGTGATGGACCAAAT+TGG | + | chr4_1:72567588-72567607 | Msa0570410:intron | 40.0% |
GCATGGCATAACAATCACAA+TGG | + | chr4_1:72567620-72567639 | Msa0570410:intron | 40.0% | |
! | ATGGACTGATGATGAGTTTG+TGG | + | chr4_1:72567916-72567935 | Msa0570410:intron | 40.0% |
AGGCCATGGTTATGATATCA+TGG | + | chr4_1:72568353-72568372 | Msa0570410:intron | 40.0% | |
CAGCCATGATATCATAACCA+TGG | - | chr4_1:72568359-72568378 | None:intergenic | 40.0% | |
ATTCTTCAAAGGGCCTATTC+TGG | - | chr4_1:72568754-72568773 | None:intergenic | 40.0% | |
! | AGACAGTGAATTTGAAGCCA+TGG | + | chr4_1:72569083-72569102 | Msa0570410:intron | 40.0% |
!! | GTAAATAGCTTTAAAGGGCC+AGG | - | chr4_1:72569117-72569136 | None:intergenic | 40.0% |
TGCCTTAACTTCAGACAGTA+GGG | - | chr4_1:72569208-72569227 | None:intergenic | 40.0% | |
TTGTTACCGGCAGAAAATTC+CGG | - | chr4_1:72569252-72569271 | None:intergenic | 40.0% | |
!! | CTAGTTTTCCTATGCCTTTC+CGG | + | chr4_1:72569285-72569304 | Msa0570410:intron | 40.0% |
ATTCAAACTGAAAGAGAGGG+GGG | - | chr4_1:72569328-72569347 | None:intergenic | 40.0% | |
CAGTGAATGACAGGCTATAA+GGG | - | chr4_1:72569507-72569526 | None:intergenic | 40.0% | |
TCAGTGAATGACAGGCTATA+AGG | - | chr4_1:72569508-72569527 | None:intergenic | 40.0% | |
TTAGGAGATGCTTGCTTTCT+TGG | + | chr4_1:72569547-72569566 | Msa0570410:three_prime_UTR | 40.0% | |
TGATGTTGGCATGAGAATCA+TGG | + | chr4_1:72569642-72569661 | Msa0570410:three_prime_UTR | 40.0% | |
AATCATGGCTTTCTGCATGT+TGG | + | chr4_1:72569657-72569676 | Msa0570410:three_prime_UTR | 40.0% | |
GTCTCAAGAGCCCTTATTGA+GGG | - | chr4_1:72565182-72565201 | None:intergenic | 45.0% | |
AATAAGGGCTCTTGAGACCT+TGG | + | chr4_1:72565184-72565203 | Msa0570410:intron | 45.0% | |
ACACAAATACCCCTGTTGCT+TGG | + | chr4_1:72565269-72565288 | Msa0570410:intron | 45.0% | |
! | CACAAATACCCCTGTTGCTT+GGG | + | chr4_1:72565270-72565289 | Msa0570410:intron | 45.0% |
TTATAGCCTGCTATGGGCTT+GGG | - | chr4_1:72565312-72565331 | None:intergenic | 45.0% | |
TTTATAGCCTGCTATGGGCT+TGG | - | chr4_1:72565313-72565332 | None:intergenic | 45.0% | |
! | GTTTTACCTCTTCCCACAGA+CGG | - | chr4_1:72565432-72565451 | None:intergenic | 45.0% |
!! | TCACGAGTCAGTGATTTGCT+TGG | + | chr4_1:72565773-72565792 | Msa0570410:CDS | 45.0% |
CCAGAAGATGACTTCTCAGA+TGG | - | chr4_1:72565801-72565820 | None:intergenic | 45.0% | |
CCATCTGAGAAGTCATCTTC+TGG | + | chr4_1:72565798-72565817 | Msa0570410:CDS | 45.0% | |
!! | CGTCATTTTAGATCCGTCAC+TGG | - | chr4_1:72565967-72565986 | None:intergenic | 45.0% |
!!! | TGGTAGCTTGCTTTTCTTCG+AGG | + | chr4_1:72566061-72566080 | Msa0570410:CDS | 45.0% |
TTAGGGAAGGATTTGTGGAC+AGG | + | chr4_1:72566123-72566142 | Msa0570410:intron | 45.0% | |
GAAGGATTTGTGGACAGGTT+AGG | + | chr4_1:72566128-72566147 | Msa0570410:intron | 45.0% | |
TTCAAGCTTATCCTGGAGCA+AGG | + | chr4_1:72566174-72566193 | Msa0570410:CDS | 45.0% | |
TCAAGCTTATCCTGGAGCAA+GGG | + | chr4_1:72566175-72566194 | Msa0570410:CDS | 45.0% | |
TGCAGTGCCCATAATAAGGT+AGG | - | chr4_1:72566235-72566254 | None:intergenic | 45.0% | |
GAAGTGCAGTGCCCATAATA+AGG | - | chr4_1:72566239-72566258 | None:intergenic | 45.0% | |
CTCAAACCCTGACCTATCTA+TGG | + | chr4_1:72566547-72566566 | Msa0570410:CDS | 45.0% | |
ATTGCCGCGATTGTTTATGC+TGG | + | chr4_1:72566620-72566639 | Msa0570410:CDS | 45.0% | |
TCAAATGAGGGAGCTGGAAT+TGG | + | chr4_1:72566974-72566993 | Msa0570410:CDS | 45.0% | |
AAGTACTTCGCAGAGCTCAA+AGG | + | chr4_1:72566997-72567016 | Msa0570410:intron | 45.0% | |
ATGGATCCTGTCGTGATATC+TGG | + | chr4_1:72567133-72567152 | Msa0570410:CDS | 45.0% | |
TTGGATCCAGATATCACGAC+AGG | - | chr4_1:72567142-72567161 | None:intergenic | 45.0% | |
GGGCTGATATGATTGCCTTA+CGG | + | chr4_1:72567167-72567186 | Msa0570410:CDS | 45.0% | |
GGCTGATATGATTGCCTTAC+GGG | + | chr4_1:72567168-72567187 | Msa0570410:CDS | 45.0% | |
CGCAAGCATATCACCAGTTT+AGG | + | chr4_1:72567266-72567285 | Msa0570410:CDS | 45.0% | |
AGCATATCACCAGTTTAGGG+AGG | + | chr4_1:72567270-72567289 | Msa0570410:CDS | 45.0% | |
! | CTGATGATGAGTTTGTGGCT+AGG | + | chr4_1:72567921-72567940 | Msa0570410:intron | 45.0% |
TGATATCATGGCTGAGCCAA+AGG | + | chr4_1:72568365-72568384 | Msa0570410:intron | 45.0% | |
TGAGCCAAAGGAAGGTCATA+CGG | + | chr4_1:72568377-72568396 | Msa0570410:intron | 45.0% | |
!! | GCAGTATGAACTTGCTGGAA+AGG | + | chr4_1:72568467-72568486 | Msa0570410:CDS | 45.0% |
!! | TGAATTTGTTGCAGTCCCGA+TGG | + | chr4_1:72568717-72568736 | Msa0570410:intron | 45.0% |
CTGTTTGATCTGCCAAAGCT+AGG | + | chr4_1:72568908-72568927 | Msa0570410:intron | 45.0% | |
GAAGCCATGGACTTTATTCC+TGG | + | chr4_1:72569096-72569115 | Msa0570410:intron | 45.0% | |
CCATCAGCAACTACTGTTAC+TGG | - | chr4_1:72569165-72569184 | None:intergenic | 45.0% | |
CCAGTAACAGTAGTTGCTGA+TGG | + | chr4_1:72569162-72569181 | Msa0570410:intron | 45.0% | |
! | ACCCCTACTGTCTGAAGTTA+AGG | + | chr4_1:72569203-72569222 | Msa0570410:intron | 45.0% |
GCCTTAACTTCAGACAGTAG+GGG | - | chr4_1:72569207-72569226 | None:intergenic | 45.0% | |
CTGCCTTAACTTCAGACAGT+AGG | - | chr4_1:72569209-72569228 | None:intergenic | 45.0% | |
! | CTTGAACCGGAATTTTCTGC+CGG | + | chr4_1:72569243-72569262 | Msa0570410:intron | 45.0% |
CTGCCGGTAACAAATTCATG+TGG | + | chr4_1:72569259-72569278 | Msa0570410:intron | 45.0% | |
TTCAAACTGAAAGAGAGGGG+GGG | - | chr4_1:72569327-72569346 | None:intergenic | 45.0% | |
CTCTAAGCTGGGACAAATCT+AGG | - | chr4_1:72569479-72569498 | None:intergenic | 45.0% | |
!! | TAAGGGATGAGCTCTAAGCT+GGG | - | chr4_1:72569490-72569509 | None:intergenic | 45.0% |
!! | ATAAGGGATGAGCTCTAAGC+TGG | - | chr4_1:72569491-72569510 | None:intergenic | 45.0% |
TGCTTGCTTTCTTGGTGGAA+AGG | + | chr4_1:72569555-72569574 | Msa0570410:three_prime_UTR | 45.0% | |
GCTTTCTTGGTGGAAAGGAT+TGG | + | chr4_1:72569560-72569579 | Msa0570410:three_prime_UTR | 45.0% | |
!!! | TTTTTTATAATGATTTTATT+TGG | + | chr4_1:72565918-72565937 | Msa0570410:intron | 5.0% |
!! | TATATTTAACAAATATAATA+AGG | - | chr4_1:72566511-72566530 | None:intergenic | 5.0% |
TGGAGGTCTTAGAGCCTTTC+TGG | - | chr4_1:72565145-72565164 | None:intergenic | 50.0% | |
!! | AAGGCTCTAAGACCTCCAGA+AGG | + | chr4_1:72565147-72565166 | Msa0570410:intron | 50.0% |
!! | AGGCTCTAAGACCTCCAGAA+GGG | + | chr4_1:72565148-72565167 | Msa0570410:intron | 50.0% |
GGTCTCAAGAGCCCTTATTG+AGG | - | chr4_1:72565183-72565202 | None:intergenic | 50.0% | |
TGCTTGGTTCCCAAGCAACA+GGG | - | chr4_1:72565282-72565301 | None:intergenic | 50.0% | |
TTGCTTGGTTCCCAAGCAAC+AGG | - | chr4_1:72565283-72565302 | None:intergenic | 50.0% | |
CAGGCCAGCATAAACAATCG+CGG | - | chr4_1:72566627-72566646 | None:intergenic | 50.0% | |
!! | GAATCACAGCTGTTGATGGC+CGG | + | chr4_1:72566854-72566873 | Msa0570410:CDS | 50.0% |
TACTTCGCAGAGCTCAAAGG+TGG | + | chr4_1:72567000-72567019 | Msa0570410:intron | 50.0% | |
! | AATGATCTCTGCGAAGCACC+AGG | + | chr4_1:72567234-72567253 | Msa0570410:CDS | 50.0% |
TGAGCTGGACCTGTTTGACA+AGG | + | chr4_1:72567294-72567313 | Msa0570410:CDS | 50.0% | |
TGACTAAGGCTGACATGCGT+GGG | - | chr4_1:72567517-72567536 | None:intergenic | 50.0% | |
ATGACTAAGGCTGACATGCG+TGG | - | chr4_1:72567518-72567537 | None:intergenic | 50.0% | |
GATGGTAGAGATCAAGGCCA+TGG | + | chr4_1:72568339-72568358 | Msa0570410:CDS | 50.0% | |
ATCATGGCTGAGCCAAAGGA+AGG | + | chr4_1:72568369-72568388 | Msa0570410:intron | 50.0% | |
GAGCCAAAGGAAGGTCATAC+GGG | + | chr4_1:72568378-72568397 | Msa0570410:intron | 50.0% | |
ATGCCCGTATGACCTTCCTT+TGG | - | chr4_1:72568384-72568403 | None:intergenic | 50.0% | |
! | AGTAAGGAGAAGCGTGTGAC+AGG | + | chr4_1:72568618-72568637 | Msa0570410:CDS | 50.0% |
! | ATTTGTTGCAGTCCCGATGG+TGG | + | chr4_1:72568720-72568739 | Msa0570410:intron | 50.0% |
!! | TCTGGTACTGGTACCACCAT+CGG | - | chr4_1:72568736-72568755 | None:intergenic | 50.0% |
GGTGGTACCAGTACCAGAAT+AGG | + | chr4_1:72568738-72568757 | Msa0570410:intron | 50.0% | |
CAAAGGGCCTATTCTGGTAC+TGG | - | chr4_1:72568748-72568767 | None:intergenic | 50.0% | |
!! | TTTTCGGGGTAGCCTAGCTT+TGG | - | chr4_1:72568923-72568942 | None:intergenic | 50.0% |
AGGGCCAGGAATAAAGTCCA+TGG | - | chr4_1:72569103-72569122 | None:intergenic | 50.0% | |
TCAAACTGAAAGAGAGGGGG+GGG | - | chr4_1:72569326-72569345 | None:intergenic | 50.0% | |
GGAGATGCTTGCTTTCTTGG+TGG | + | chr4_1:72569550-72569569 | Msa0570410:three_prime_UTR | 50.0% | |
TAAGACCTCCAGAAGGGCTC+AGG | + | chr4_1:72565154-72565173 | Msa0570410:intron | 55.0% | |
GCTTGGTTCCCAAGCAACAG+GGG | - | chr4_1:72565281-72565300 | None:intergenic | 55.0% | |
CCTGCTATGGGCTTGGGTTT+CGG | - | chr4_1:72565306-72565325 | None:intergenic | 55.0% | |
ATCCTGGAGCAAGGGTAGCA+AGG | + | chr4_1:72566183-72566202 | Msa0570410:CDS | 55.0% | |
! | GGTAGTTTCTTTGGGGAGGG+TGG | - | chr4_1:72566665-72566684 | None:intergenic | 55.0% |
CTTGTCGAGATCGTCCCGTA+AGG | - | chr4_1:72567185-72567204 | None:intergenic | 55.0% | |
CGGGACGATCTCGACAAGAA+CGG | + | chr4_1:72567187-72567206 | Msa0570410:CDS | 55.0% | |
CCAGCTCATCCTCCCTAAAC+TGG | - | chr4_1:72567282-72567301 | None:intergenic | 55.0% | |
CCAGTTTAGGGAGGATGAGC+TGG | + | chr4_1:72567279-72567298 | Msa0570410:CDS | 55.0% | |
GACTAAGGCTGACATGCGTG+GGG | - | chr4_1:72567516-72567535 | None:intergenic | 55.0% | |
GGCATGCTTCTCAGCATCTC+TGG | - | chr4_1:72568262-72568281 | None:intergenic | 55.0% | |
AGGGCGCAGTATGAACTTGC+TGG | + | chr4_1:72568462-72568481 | Msa0570410:CDS | 55.0% | |
!! | GAACTTGCTGGAAAGGCTGC+TGG | + | chr4_1:72568474-72568493 | Msa0570410:CDS | 55.0% |
!! | CTGGTACTGGTACCACCATC+GGG | - | chr4_1:72568735-72568754 | None:intergenic | 55.0% |
AAACTGAAAGAGAGGGGGGG+GGG | - | chr4_1:72569324-72569343 | None:intergenic | 55.0% | |
CAAACTGAAAGAGAGGGGGG+GGG | - | chr4_1:72569325-72569344 | None:intergenic | 55.0% | |
GGCTCAGGCGCCCTCAATAA+GGG | + | chr4_1:72565169-72565188 | Msa0570410:intron | 60.0% | |
CTTAGAAGGGCGGTGCCTCA+AGG | - | chr4_1:72565218-72565237 | None:intergenic | 60.0% | |
GGGCTTGGGTTTCGGTTGCT+TGG | - | chr4_1:72565298-72565317 | None:intergenic | 60.0% | |
CCGAAACCCAAGCCCATAGC+AGG | + | chr4_1:72565303-72565322 | Msa0570410:intron | 60.0% | |
AGTACAGTTGGCGCCGTCTG+TGG | + | chr4_1:72565416-72565435 | Msa0570410:intron | 60.0% | |
GTACAGTTGGCGCCGTCTGT+GGG | + | chr4_1:72565417-72565436 | Msa0570410:intron | 60.0% | |
CACCTTGCTACCCTTGCTCC+AGG | - | chr4_1:72566188-72566207 | None:intergenic | 60.0% | |
AGACTGGAATGCACCGCAGC+CGG | - | chr4_1:72566876-72566895 | None:intergenic | 60.0% | |
! | TGCGAAGCACCAGGAAGCTC+AGG | + | chr4_1:72567243-72567262 | Msa0570410:CDS | 60.0% |
ATGCTTGCGCCTGAGCTTCC+TGG | - | chr4_1:72567255-72567274 | None:intergenic | 60.0% | |
AACTGAAAGAGAGGGGGGGG+GGG | - | chr4_1:72569323-72569342 | None:intergenic | 60.0% | |
GGGCTCAGGCGCCCTCAATA+AGG | + | chr4_1:72565168-72565187 | Msa0570410:intron | 65.0% | |
ACCTTGGCGCTCTCGCCTTG+AGG | + | chr4_1:72565200-72565219 | Msa0570410:intron | 65.0% | |
TTGGCGCCGTCTGTGGGAAG+AGG | + | chr4_1:72565423-72565442 | Msa0570410:intron | 65.0% | |
!! | CAGCTGTTGATGGCCGGCTG+CGG | + | chr4_1:72566860-72566879 | Msa0570410:CDS | 65.0% |
! | GGGGGAAGCCGGAAAGGCAT+AGG | - | chr4_1:72569296-72569315 | None:intergenic | 65.0% |
ACTGAAAGAGAGGGGGGGGG+GGG | - | chr4_1:72569322-72569341 | None:intergenic | 65.0% | |
GGGGAGAGTAGCGGTTGCGG+CGG | - | chr4_1:72565021-72565040 | None:intergenic | 70.0% | |
!! | TGAGGGCGCCTGAGCCCTTC+TGG | - | chr4_1:72565165-72565184 | None:intergenic | 70.0% |
!! | GCCTCAAGGCGAGAGCGCCA+AGG | - | chr4_1:72565204-72565223 | None:intergenic | 70.0% |
TGAAAGAGAGGGGGGGGGGG+GGG | - | chr4_1:72569320-72569339 | None:intergenic | 70.0% | |
CTGAAAGAGAGGGGGGGGGG+GGG | - | chr4_1:72569321-72569340 | None:intergenic | 70.0% | |
GGGCGCCTGAGCCCTTCTGG+AGG | - | chr4_1:72565162-72565181 | None:intergenic | 75.0% | |
AAAGAGAGGGGGGGGGGGGG+GGG | - | chr4_1:72569318-72569337 | None:intergenic | 75.0% | |
GAAAGAGAGGGGGGGGGGGG+GGG | - | chr4_1:72569319-72569338 | None:intergenic | 75.0% | |
! | GGGGGGGGGGGAAGCCGGAA+AGG | - | chr4_1:72569302-72569321 | None:intergenic | 80.0% |
! | AAGAGAGGGGGGGGGGGGGG+GGG | - | chr4_1:72569317-72569336 | None:intergenic | 80.0% |
! | AGAGAGGGGGGGGGGGGGGG+GGG | - | chr4_1:72569316-72569335 | None:intergenic | 85.0% |
! | GGGGGGGGGGGGGGGGAAGC+CGG | - | chr4_1:72569307-72569326 | None:intergenic | 90.0% |
! | AGAGGGGGGGGGGGGGGGGG+GGG | - | chr4_1:72569314-72569333 | None:intergenic | 90.0% |
! | GAGAGGGGGGGGGGGGGGGG+GGG | - | chr4_1:72569315-72569334 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 72564928 | 72569890 | 72564928 | ID=Msa0570410;Name=Msa0570410 |
chr4_1 | mRNA | 72564928 | 72569890 | 72564928 | ID=Msa0570410-mRNA-1;Parent=Msa0570410;Name=Msa0570410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|0.46|0.31|1|0.33|0.18|16|378|602 |
chr4_1 | exon | 72564928 | 72565040 | 72564928 | ID=Msa0570410-mRNA-1:exon:24793;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72565559 | 72565598 | 72565559 | ID=Msa0570410-mRNA-1:exon:24794;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72565679 | 72565847 | 72565679 | ID=Msa0570410-mRNA-1:exon:24795;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72565950 | 72566115 | 72565950 | ID=Msa0570410-mRNA-1:exon:24796;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72566123 | 72566136 | 72566123 | ID=Msa0570410-mRNA-1:exon:24797;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72566145 | 72566204 | 72566145 | ID=Msa0570410-mRNA-1:exon:24798;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72566288 | 72566446 | 72566288 | ID=Msa0570410-mRNA-1:exon:24799;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72566538 | 72566761 | 72566538 | ID=Msa0570410-mRNA-1:exon:24800;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72566780 | 72566891 | 72566780 | ID=Msa0570410-mRNA-1:exon:24801;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72566920 | 72566998 | 72566920 | ID=Msa0570410-mRNA-1:exon:24802;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72567019 | 72567208 | 72567019 | ID=Msa0570410-mRNA-1:exon:24803;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72567233 | 72567360 | 72567233 | ID=Msa0570410-mRNA-1:exon:24804;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72568210 | 72568360 | 72568210 | ID=Msa0570410-mRNA-1:exon:24805;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72568391 | 72568639 | 72568391 | ID=Msa0570410-mRNA-1:exon:24806;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72568731 | 72568738 | 72568731 | ID=Msa0570410-mRNA-1:exon:24807;Parent=Msa0570410-mRNA-1 |
chr4_1 | exon | 72569444 | 72569890 | 72569444 | ID=Msa0570410-mRNA-1:exon:24808;Parent=Msa0570410-mRNA-1 |
chr4_1 | five_prime_UTR | 72564928 | 72565040 | 72564928 | ID=Msa0570410-mRNA-1:five_prime_utr;Parent=Msa0570410-mRNA-1 |
chr4_1 | five_prime_UTR | 72565559 | 72565567 | 72565559 | ID=Msa0570410-mRNA-1:five_prime_utr;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72565568 | 72565598 | 72565568 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72565679 | 72565847 | 72565679 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72565950 | 72566115 | 72565950 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72566123 | 72566136 | 72566123 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72566145 | 72566204 | 72566145 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72566288 | 72566446 | 72566288 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72566538 | 72566761 | 72566538 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72566780 | 72566891 | 72566780 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72566920 | 72566998 | 72566920 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72567019 | 72567208 | 72567019 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72567233 | 72567360 | 72567233 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72568210 | 72568360 | 72568210 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72568391 | 72568639 | 72568391 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72568731 | 72568738 | 72568731 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | CDS | 72569444 | 72569512 | 72569444 | ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1 |
chr4_1 | three_prime_UTR | 72569513 | 72569890 | 72569513 | ID=Msa0570410-mRNA-1:three_prime_utr;Parent=Msa0570410-mRNA-1 |
Gene Sequence |
Protein sequence |