AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0570410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570410 MtrunA17_Chr5g0429061 28.539 438 238 16 156 569 24 410 2.47e-29 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCTCAACGTAATATTTA+TGG 0.105745 4_1:-72568281 None:intergenic
TTAGGAGATGCTTGCTTTCT+TGG 0.154349 4_1:+72569547 Msa0570410:three_prime_UTR
TGCGATGAATGAAGAAATTT+AGG 0.154365 4_1:-72564980 None:intergenic
AAGACACCCATGATGTTAAA+TGG 0.171851 4_1:+72568307 Msa0570410:CDS
GAGTCAAATCTACCTTAATA+TGG 0.181160 4_1:-72568512 None:intergenic
ACAAGGATGAAATTATTCTT+AGG 0.201552 4_1:+72567311 Msa0570410:CDS
CTATGGCAACAAATAGTATT+TGG 0.202946 4_1:+72566564 Msa0570410:CDS
GATTCTTGTTAGAGCTATAT+TGG 0.254725 4_1:+72566329 Msa0570410:CDS
CCATCTGAGAAGTCATCTTC+TGG 0.268632 4_1:+72565798 Msa0570410:CDS
GGCTGATATGATTGCCTTAC+GGG 0.274728 4_1:+72567168 Msa0570410:CDS
TTGCTTGATAGATAATATTA+AGG 0.278418 4_1:+72566730 Msa0570410:CDS
CGCAAGCATATCACCAGTTT+AGG 0.285754 4_1:+72567266 Msa0570410:CDS
TGATATCTGGATCCAACTTT+AGG 0.286480 4_1:+72567146 Msa0570410:CDS
ATGCTTGCGCCTGAGCTTCC+TGG 0.294504 4_1:-72567252 None:intergenic
GTGGCTCAGATATAAATTTC+AGG 0.314692 4_1:-72566643 None:intergenic
AAGAAAAGTATACGCATAAT+AGG 0.317147 4_1:-72566924 None:intergenic
ATGAAAAGATCTAGTTCATT+TGG 0.329809 4_1:-72568591 None:intergenic
CTACATCATTGCCCATATTA+AGG 0.331089 4_1:+72568500 Msa0570410:CDS
TGTGCTAGATTAACATTAAC+AGG 0.334320 4_1:+72569805 Msa0570410:three_prime_UTR
GAATTCTTGAAGGGTAGTTT+TGG 0.335164 4_1:-72566401 None:intergenic
GTAAAACAATGTTAGTTGTT+AGG 0.338320 4_1:+72569529 Msa0570410:three_prime_UTR
CTTCTCAACGTAATATTTAT+GGG 0.345810 4_1:-72568280 None:intergenic
GCGATGAATGAAGAAATTTA+GGG 0.351932 4_1:-72564979 None:intergenic
ATGGATCCTGTCGTGATATC+TGG 0.352751 4_1:+72567133 Msa0570410:CDS
ATCTTCTGGGATCTGTGTTA+TGG 0.357242 4_1:+72565812 Msa0570410:CDS
AAAGATCTGAAAAGGAAAAT+CGG 0.358497 4_1:+72568229 Msa0570410:CDS
TCAGTGAATGACAGGCTATA+AGG 0.358850 4_1:-72569505 None:intergenic
TCAAATGAGGGAGCTGGAAT+TGG 0.362836 4_1:+72566974 Msa0570410:CDS
GTACCCTAGGGATAGGAATA+TGG 0.367679 4_1:-72569880 None:intergenic
GATATCTGGATCCAACTTTA+GGG 0.374491 4_1:+72567147 Msa0570410:CDS
AAAGCAAGCTACCATCATTA+TGG 0.375124 4_1:-72566052 None:intergenic
TTTCTTTCTTGAATTCTTGA+AGG 0.376905 4_1:-72566411 None:intergenic
TATCTTACGTTTGATATTGA+AGG 0.377191 4_1:+72569751 Msa0570410:three_prime_UTR
ATGAAGAAATTTAGGGTTAC+CGG 0.377193 4_1:-72564972 None:intergenic
ATTCTTGTTAGAGCTATATT+GGG 0.382722 4_1:+72566330 Msa0570410:CDS
CTCAAACCCTGACCTATCTA+TGG 0.382846 4_1:+72566547 Msa0570410:CDS
CTCTAAGCTGGGACAAATCT+AGG 0.383516 4_1:-72569476 None:intergenic
CAACTTCAGTGAAGAATAGA+AGG 0.389396 4_1:+72568424 Msa0570410:CDS
TGAAAAGGAAAATCGGGATA+TGG 0.390657 4_1:+72568236 Msa0570410:CDS
TAATTTCATCCTTGTCAAAC+AGG 0.392595 4_1:-72567303 None:intergenic
CCAGCTCATCCTCCCTAAAC+TGG 0.396368 4_1:-72567279 None:intergenic
CAAGGATGAAATTATTCTTA+GGG 0.399877 4_1:+72567312 Msa0570410:CDS
TCTTCTGGGATCTGTGTTAT+GGG 0.400484 4_1:+72565813 Msa0570410:CDS
TGCGAAGCACCAGGAAGCTC+AGG 0.409838 4_1:+72567243 Msa0570410:CDS
TATGGCAACAAATAGTATTT+GGG 0.412899 4_1:+72566565 Msa0570410:CDS
AGTCAAATCTACCTTAATAT+GGG 0.417830 4_1:-72568511 None:intergenic
ATTCAAATTCAAGCTTATCC+TGG 0.420175 4_1:+72566167 Msa0570410:CDS
GTGTTATGGGAAACTCTTCT+TGG 0.420434 4_1:+72565826 Msa0570410:CDS
ATCTTCGTGCTCAAATGTTA+AGG 0.424929 4_1:-72566093 None:intergenic
TAAGGTAGATTTGACTCAAA+AGG 0.428974 4_1:+72568518 Msa0570410:CDS
CAGTGAATGACAGGCTATAA+GGG 0.431361 4_1:-72569504 None:intergenic
GCTTTCTTGGTGGAAAGGAT+TGG 0.431676 4_1:+72569560 Msa0570410:three_prime_UTR
GCTCTAACAAGAATCCTCTA+TGG 0.433675 4_1:-72566321 None:intergenic
TTTGTTGCCATAGATAGGTC+AGG 0.434803 4_1:-72566554 None:intergenic
GGCATGCTTCTCAGCATCTC+TGG 0.443123 4_1:-72568259 None:intergenic
GATTTGCCCATTTAACATCA+TGG 0.446315 4_1:-72568314 None:intergenic
TCAGTTGTTGATGATAAGAA+TGG 0.456667 4_1:+72565990 Msa0570410:CDS
AGACACCCATGATGTTAAAT+GGG 0.460002 4_1:+72568308 Msa0570410:CDS
TGGTAACGATGAAAGGTAGA+AGG 0.461927 4_1:-72566301 None:intergenic
ACCTTTCATCGTTACCATAG+AGG 0.464119 4_1:+72566307 Msa0570410:CDS
CATCTGAGAAGTCATCTTCT+GGG 0.468349 4_1:+72565799 Msa0570410:CDS
GGTAGTTTCTTTGGGGAGGG+TGG 0.470019 4_1:-72566662 None:intergenic
AGACTGGAATGCACCGCAGC+CGG 0.471238 4_1:-72566873 None:intergenic
ATAAGGGATGAGCTCTAAGC+TGG 0.471240 4_1:-72569488 None:intergenic
GGGCTGATATGATTGCCTTA+CGG 0.472172 4_1:+72567167 Msa0570410:CDS
CCAGTTTAGGGAGGATGAGC+TGG 0.472388 4_1:+72567279 Msa0570410:CDS
AGGTAGAAGGATCACCATAA+AGG 0.473131 4_1:-72566288 None:intergenic
TGCTTGCTTTCTTGGTGGAA+AGG 0.482167 4_1:+72569555 Msa0570410:three_prime_UTR
GGAGATGCTTGCTTTCTTGG+TGG 0.482968 4_1:+72569550 Msa0570410:three_prime_UTR
TACTATTTGTTGCCATAGAT+AGG 0.484330 4_1:-72566559 None:intergenic
CCCTCATTTGAAGTAATGTC+AGG 0.486972 4_1:-72566962 None:intergenic
GATTCTTGAAAGATCTGAAA+AGG 0.488280 4_1:+72568221 Msa0570410:CDS
GCAAGCATATCACCAGTTTA+GGG 0.488661 4_1:+72567267 Msa0570410:CDS
ATTTGCCCATTTAACATCAT+GGG 0.494953 4_1:-72568313 None:intergenic
AAGATCTGAAAAGGAAAATC+GGG 0.495572 4_1:+72568230 Msa0570410:CDS
AGTAAGGAGAAGCGTGTGAC+AGG 0.499793 4_1:+72568618 Msa0570410:CDS
CAGCTGTTGATGGCCGGCTG+CGG 0.502306 4_1:+72566860 Msa0570410:CDS
AGGGCGCAGTATGAACTTGC+TGG 0.503546 4_1:+72568462 Msa0570410:CDS
TCTGCAGTTAACCATAATGA+TGG 0.506385 4_1:+72566041 Msa0570410:CDS
ATTGCCGCGATTGTTTATGC+TGG 0.506930 4_1:+72566620 Msa0570410:CDS
TGATGTTGGCATGAGAATCA+TGG 0.510178 4_1:+72569642 Msa0570410:three_prime_UTR
TCCTCTATGGTAACGATGAA+AGG 0.510188 4_1:-72566308 None:intergenic
CACCTTGCTACCCTTGCTCC+AGG 0.511952 4_1:-72566185 None:intergenic
TTCTTTCTTGAATTCTTGAA+GGG 0.514443 4_1:-72566410 None:intergenic
ACCTGACATTACTTCAAATG+AGG 0.517714 4_1:+72566961 Msa0570410:CDS
ACGTTTGATATTGAAGGCTA+CGG 0.522131 4_1:+72569757 Msa0570410:three_prime_UTR
CCAGAAGATGACTTCTCAGA+TGG 0.523618 4_1:-72565798 None:intergenic
TGAGCCAAAGGAAGGTCATA+CGG 0.524010 4_1:+72568377 Msa0570410:intron
GAATCACAGCTGTTGATGGC+CGG 0.524635 4_1:+72566854 Msa0570410:CDS
AATAGGTAGTTTCTTTGGGG+AGG 0.526238 4_1:-72566666 None:intergenic
ATAGGTAGTTTCTTTGGGGA+GGG 0.526659 4_1:-72566665 None:intergenic
AATCATGGCTTTCTGCATGT+TGG 0.530486 4_1:+72569657 Msa0570410:three_prime_UTR
ATTACTTCAAATGAGGGAGC+TGG 0.531617 4_1:+72566968 Msa0570410:CDS
GCAGTATGAACTTGCTGGAA+AGG 0.534391 4_1:+72568467 Msa0570410:CDS
TCACGAGTCAGTGATTTGCT+TGG 0.538830 4_1:+72565773 Msa0570410:CDS
AATCATGATGGTAGAGATCA+AGG 0.544381 4_1:+72568333 Msa0570410:CDS
GAACTTGCTGGAAAGGCTGC+TGG 0.549202 4_1:+72568474 Msa0570410:CDS
GGAATCATACAAAATTCGTA+TGG 0.554540 4_1:+72567114 Msa0570410:CDS
TTCAAGCTTATCCTGGAGCA+AGG 0.559481 4_1:+72566174 Msa0570410:CDS
AATGATCTCTGCGAAGCACC+AGG 0.560183 4_1:+72567234 Msa0570410:CDS
CTTGTCGAGATCGTCCCGTA+AGG 0.561798 4_1:-72567182 None:intergenic
GAGCCAAAGGAAGGTCATAC+GGG 0.565166 4_1:+72568378 Msa0570410:intron
AATCATATCAGCCCTAAAGT+TGG 0.571436 4_1:-72567158 None:intergenic
TTGTTGCCATAGATAGGTCA+GGG 0.572061 4_1:-72566553 None:intergenic
AATAATCAACTTAATTGTGA+TGG 0.572786 4_1:+72566818 Msa0570410:CDS
TTGGATCCAGATATCACGAC+AGG 0.581700 4_1:-72567139 None:intergenic
ATATTGGGTTAATAAGAGAC+TGG 0.584755 4_1:+72566345 Msa0570410:CDS
GATGATGATAGTAAACGTAA+AGG 0.586994 4_1:+72565577 Msa0570410:CDS
ATCCTGGAGCAAGGGTAGCA+AGG 0.587922 4_1:+72566183 Msa0570410:CDS
CGGGACGATCTCGACAAGAA+CGG 0.588857 4_1:+72567187 Msa0570410:CDS
AATAATAGCATCTGAACAGA+CGG 0.589428 4_1:-72566018 None:intergenic
CGATCATCAGCAAAATCAAG+AGG 0.590757 4_1:-72565732 None:intergenic
TAAAACTACTTCAGAAGCAG+AGG 0.614916 4_1:+72567054 Msa0570410:CDS
AATAATACAGTGTTCACAGT+AGG 0.616836 4_1:-72566600 None:intergenic
CCTGACATTACTTCAAATGA+GGG 0.618975 4_1:+72566962 Msa0570410:CDS
AATTACAGATATTCCAGTGA+CGG 0.621656 4_1:+72565951 Msa0570410:CDS
GATGGTAGAGATCAAGGCCA+TGG 0.624513 4_1:+72568339 Msa0570410:CDS
TGAATTTGTTGCAGTCCCGA+TGG 0.625515 4_1:+72568717 Msa0570410:intron
GTTAAATGGGCAAATCATGA+TGG 0.627611 4_1:+72568321 Msa0570410:CDS
TCAAGCTTATCCTGGAGCAA+GGG 0.628958 4_1:+72566175 Msa0570410:CDS
TAAGGGATGAGCTCTAAGCT+GGG 0.639362 4_1:-72569487 None:intergenic
GGCAACAAATAGTATTTGGG+AGG 0.647588 4_1:+72566568 Msa0570410:CDS
AGCATATCACCAGTTTAGGG+AGG 0.671078 4_1:+72567270 Msa0570410:CDS
CAGGCCAGCATAAACAATCG+CGG 0.692749 4_1:-72566624 None:intergenic
TGAGCTGGACCTGTTTGACA+AGG 0.731803 4_1:+72567294 Msa0570410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAACAAAAAAAAAAA+AGG - chr4_1:72568189-72568208 None:intergenic 10.0%
!! AATTCAAGAAAGAAAAAAAA+TGG + chr4_1:72566419-72566438 Msa0570410:CDS 15.0%
!! AGAATGTCAATTTAAATATA+AGG + chr4_1:72568052-72568071 Msa0570410:intron 15.0%
!! AATTTGAACAAAAGAAATTT+AGG + chr4_1:72568107-72568126 Msa0570410:intron 15.0%
!!! TATTTCATGTCAAATTTTTT+CGG - chr4_1:72568939-72568958 None:intergenic 15.0%
!!! TATTTGTCTTTTTAGTAATT+AGG + chr4_1:72569018-72569037 Msa0570410:intron 15.0%
!!! TATTTTGAATCAAATAAAAG+AGG + chr4_1:72569840-72569859 Msa0570410:three_prime_UTR 15.0%
!!! ATTTTGAATCAAATAAAAGA+GGG + chr4_1:72569841-72569860 Msa0570410:three_prime_UTR 15.0%
!! NNNNNNNNNNCTTAGTCTCA+TGG + chr4_1:72565549-72565568 Msa0570410:intron 20.0%
!!! GAAATTTTTAGTTTTAGTGA+CGG + chr4_1:72565668-72565687 Msa0570410:intron 20.0%
!!! TATTTGTTAAATATATGTGC+AGG + chr4_1:72566516-72566535 Msa0570410:intron 20.0%
!!! TCACTTTTTTTGACAAAAAT+AGG - chr4_1:72566686-72566705 None:intergenic 20.0%
!! TTGCTTGATAGATAATATTA+AGG + chr4_1:72566730-72566749 Msa0570410:CDS 20.0%
!! AATAATCAACTTAATTGTGA+TGG + chr4_1:72566818-72566837 Msa0570410:CDS 20.0%
!!! CTTTTTATCTCATTAATAGA+AGG + chr4_1:72567392-72567411 Msa0570410:intron 20.0%
!! TTTGTTAAAATTACTTGCAA+TGG - chr4_1:72567713-72567732 None:intergenic 20.0%
!! AAATTAGAGGTTAAAAATGT+TGG - chr4_1:72567776-72567795 None:intergenic 20.0%
!! TGAGATATAATTCAAATTAG+AGG - chr4_1:72567789-72567808 None:intergenic 20.0%
!!! AAATGATTTTCTTTGCAATT+TGG - chr4_1:72567822-72567841 None:intergenic 20.0%
!!! ATTGCAAAGAAAATCATTTT+AGG + chr4_1:72567823-72567842 Msa0570410:intron 20.0%
!!! TTGCAAAGAAAATCATTTTA+GGG + chr4_1:72567824-72567843 Msa0570410:intron 20.0%
!!! ATAATGTGTTTTGTATGATT+TGG - chr4_1:72568142-72568161 None:intergenic 20.0%
!!! TGTTTTTAACATTCTTCAAA+GGG - chr4_1:72568764-72568783 None:intergenic 20.0%
!!! TTGTTTTTAACATTCTTCAA+AGG - chr4_1:72568765-72568784 None:intergenic 20.0%
!! TGATAATCTTTATTAGTAAG+TGG + chr4_1:72568790-72568809 Msa0570410:intron 20.0%
!! ATACTAAATAGCAAAATAGA+AGG - chr4_1:72568825-72568844 None:intergenic 20.0%
!! TAGATATGTCTGATAATATT+TGG + chr4_1:72568866-72568885 Msa0570410:intron 20.0%
!!! ATTTCATGTCAAATTTTTTC+GGG - chr4_1:72568938-72568957 None:intergenic 20.0%
!! CTGTATAAACAAAAAAAGAA+GGG - chr4_1:72569065-72569084 None:intergenic 20.0%
!! TCTGTATAAACAAAAAAAGA+AGG - chr4_1:72569066-72569085 None:intergenic 20.0%
!!! ATAACGTAAATAGCTTTAAA+GGG - chr4_1:72569122-72569141 None:intergenic 20.0%
!!! AATAACGTAAATAGCTTTAA+AGG - chr4_1:72569123-72569142 None:intergenic 20.0%
!! ATTTACGTTATTCTGTATTA+TGG + chr4_1:72569131-72569150 Msa0570410:intron 20.0%
!! TTTACGTTATTCTGTATTAT+GGG + chr4_1:72569132-72569151 Msa0570410:intron 20.0%
!! TGAATAAAAAAACTTTCTTC+AGG - chr4_1:72569703-72569722 None:intergenic 20.0%
! TTAAAAAAGCAATGGTCAAA+AGG + chr4_1:72564932-72564951 Msa0570410:five_prime_UTR 25.0%
! CAAAAGGTAAATGTGAAAAA+AGG + chr4_1:72564948-72564967 Msa0570410:five_prime_UTR 25.0%
! AATCAAATGAAGTAACTAAG+AGG - chr4_1:72565866-72565885 None:intergenic 25.0%
!!! TGATTTTATTTGGAATTTGC+AGG + chr4_1:72565928-72565947 Msa0570410:intron 25.0%
!!! TTTTTTATGAACAGCCTTTA+TGG + chr4_1:72566274-72566293 Msa0570410:intron 25.0%
! ATTCTTGTTAGAGCTATATT+GGG + chr4_1:72566330-72566349 Msa0570410:CDS 25.0%
! TTCTTTCTTGAATTCTTGAA+GGG - chr4_1:72566413-72566432 None:intergenic 25.0%
! TTTCTTTCTTGAATTCTTGA+AGG - chr4_1:72566414-72566433 None:intergenic 25.0%
!!! ATCTTCTATCTAGTTTTCTA+TGG + chr4_1:72566482-72566501 Msa0570410:intron 25.0%
! TATGGCAACAAATAGTATTT+GGG + chr4_1:72566565-72566584 Msa0570410:CDS 25.0%
! AAAAATAGGTAGTTTCTTTG+GGG - chr4_1:72566672-72566691 None:intergenic 25.0%
! CAAAAATAGGTAGTTTCTTT+GGG - chr4_1:72566673-72566692 None:intergenic 25.0%
! ACAAAAATAGGTAGTTTCTT+TGG - chr4_1:72566674-72566693 None:intergenic 25.0%
!! AAGAAAAGTATACGCATAAT+AGG - chr4_1:72566927-72566946 None:intergenic 25.0%
!! GAATGTGATTTTACAAACAA+CGG + chr4_1:72567022-72567041 Msa0570410:CDS 25.0%
! ACAAGGATGAAATTATTCTT+AGG + chr4_1:72567311-72567330 Msa0570410:CDS 25.0%
! CAAGGATGAAATTATTCTTA+GGG + chr4_1:72567312-72567331 Msa0570410:CDS 25.0%
!! CTTTTCATTCTTAAAGATAG+AGG - chr4_1:72567420-72567439 None:intergenic 25.0%
!! GCAAACACATATCATAATTT+TGG + chr4_1:72567467-72567486 Msa0570410:intron 25.0%
! TTCAAACATCTTAACTAACT+TGG + chr4_1:72567673-72567692 Msa0570410:intron 25.0%
! TATAAACTCAGATTGTAGTT+AGG - chr4_1:72567736-72567755 None:intergenic 25.0%
!!! ATTTTAGGGTGTTAATTAGA+TGG + chr4_1:72567838-72567857 Msa0570410:intron 25.0%
! ATAGTATAGGAAAGCTATAA+TGG - chr4_1:72567880-72567899 None:intergenic 25.0%
! ACTATGCTCAAAAATAGTAT+AGG - chr4_1:72567893-72567912 None:intergenic 25.0%
! TTGGCATAACAATCAAATAA+TGG - chr4_1:72567949-72567968 None:intergenic 25.0%
! AAAGATCTGAAAAGGAAAAT+CGG + chr4_1:72568229-72568248 Msa0570410:CDS 25.0%
! CTTCTCAACGTAATATTTAT+GGG - chr4_1:72568283-72568302 None:intergenic 25.0%
! ACTTCTCAACGTAATATTTA+TGG - chr4_1:72568284-72568303 None:intergenic 25.0%
!!! AAGGCATTTTAAATTTAGCA+GGG + chr4_1:72568443-72568462 Msa0570410:CDS 25.0%
! AGTCAAATCTACCTTAATAT+GGG - chr4_1:72568514-72568533 None:intergenic 25.0%
!! ATGAAAAGATCTAGTTCATT+TGG - chr4_1:72568594-72568613 None:intergenic 25.0%
!! AGATCTTTTCATGTATAGTA+AGG + chr4_1:72568602-72568621 Msa0570410:CDS 25.0%
!!! TTTCATGTCAAATTTTTTCG+GGG - chr4_1:72568937-72568956 None:intergenic 25.0%
! GATTGTTAAATAACTTGAAC+CGG + chr4_1:72569230-72569249 Msa0570410:intron 25.0%
! AATATTCAAACTGAAAGAGA+GGG - chr4_1:72569331-72569350 None:intergenic 25.0%
! AAATATTCAAACTGAAAGAG+AGG - chr4_1:72569332-72569351 None:intergenic 25.0%
!!! TCGTTCTTATTTCTAATTAC+AGG + chr4_1:72569422-72569441 Msa0570410:intron 25.0%
!!! TCTTATTTCTAATTACAGGA+AGG + chr4_1:72569426-72569445 Msa0570410:intron 25.0%
! GTAAAACAATGTTAGTTGTT+AGG + chr4_1:72569529-72569548 Msa0570410:three_prime_UTR 25.0%
!!! CTTGATTATGTTTTTGATGT+TGG + chr4_1:72569628-72569647 Msa0570410:three_prime_UTR 25.0%
!!! TTCATTTTAGTTTGCATGTT+TGG + chr4_1:72569719-72569738 Msa0570410:three_prime_UTR 25.0%
!!! TCATTTTAGTTTGCATGTTT+GGG + chr4_1:72569720-72569739 Msa0570410:three_prime_UTR 25.0%
! TATCTTACGTTTGATATTGA+AGG + chr4_1:72569751-72569770 Msa0570410:three_prime_UTR 25.0%
! ATGAAGAAATTTAGGGTTAC+CGG - chr4_1:72564975-72564994 None:intergenic 30.0%
GCGATGAATGAAGAAATTTA+GGG - chr4_1:72564982-72565001 None:intergenic 30.0%
TGCGATGAATGAAGAAATTT+AGG - chr4_1:72564983-72565002 None:intergenic 30.0%
TAGTATTTATAGCCTGCTAT+GGG - chr4_1:72565318-72565337 None:intergenic 30.0%
TAAGGAATACTAGGATTCTA+GGG - chr4_1:72565382-72565401 None:intergenic 30.0%
AACTGTACTTGCAAAAAGTA+CGG - chr4_1:72565405-72565424 None:intergenic 30.0%
GATGATGATAGTAAACGTAA+AGG + chr4_1:72565577-72565596 Msa0570410:CDS 30.0%
AATTACAGATATTCCAGTGA+CGG + chr4_1:72565951-72565970 Msa0570410:CDS 30.0%
!! TCAGTTGTTGATGATAAGAA+TGG + chr4_1:72565990-72566009 Msa0570410:CDS 30.0%
AATAATAGCATCTGAACAGA+CGG - chr4_1:72566021-72566040 None:intergenic 30.0%
ATTCAAATTCAAGCTTATCC+TGG + chr4_1:72566167-72566186 Msa0570410:CDS 30.0%
ACACAAACCTACCTTATTAT+GGG + chr4_1:72566225-72566244 Msa0570410:intron 30.0%
GATTCTTGTTAGAGCTATAT+TGG + chr4_1:72566329-72566348 Msa0570410:CDS 30.0%
ATATTGGGTTAATAAGAGAC+TGG + chr4_1:72566345-72566364 Msa0570410:CDS 30.0%
! TACTATTTGTTGCCATAGAT+AGG - chr4_1:72566562-72566581 None:intergenic 30.0%
CTATGGCAACAAATAGTATT+TGG + chr4_1:72566564-72566583 Msa0570410:CDS 30.0%
AATAATACAGTGTTCACAGT+AGG - chr4_1:72566603-72566622 None:intergenic 30.0%
CAGTACATAGAAAATAAGAC+TGG - chr4_1:72566892-72566911 None:intergenic 30.0%
!!! ATGTTTTGAAAAAAGAGCTG+AGG + chr4_1:72567093-72567112 Msa0570410:CDS 30.0%
GGAATCATACAAAATTCGTA+TGG + chr4_1:72567114-72567133 Msa0570410:CDS 30.0%
TAATTTCATCCTTGTCAAAC+AGG - chr4_1:72567306-72567325 None:intergenic 30.0%
CCATTGATATTACATGACTA+AGG - chr4_1:72567531-72567550 None:intergenic 30.0%
CCTTAGTCATGTAATATCAA+TGG + chr4_1:72567528-72567547 Msa0570410:intron 30.0%
CATGCTTCAATAAACCAATT+TGG - chr4_1:72567605-72567624 None:intergenic 30.0%
! CAAATTGGTTTATTGAAGCA+TGG + chr4_1:72567603-72567622 Msa0570410:intron 30.0%
TTGAAGCACAAACAACTAAA+CGG - chr4_1:72567658-72567677 None:intergenic 30.0%
!! TATTTTTGAGCATAGTGTGA+TGG + chr4_1:72567897-72567916 Msa0570410:intron 30.0%
CAAGCACTAATAATTGAGTT+TGG - chr4_1:72567968-72567987 None:intergenic 30.0%
ACTCAATTATTAGTGCTTGA+AGG + chr4_1:72567969-72567988 Msa0570410:intron 30.0%
GATTCTTGAAAGATCTGAAA+AGG + chr4_1:72568221-72568240 Msa0570410:CDS 30.0%
AAGATCTGAAAAGGAAAATC+GGG + chr4_1:72568230-72568249 Msa0570410:CDS 30.0%
ATTTGCCCATTTAACATCAT+GGG - chr4_1:72568316-72568335 None:intergenic 30.0%
!!! GAAGGCATTTTAAATTTAGC+AGG + chr4_1:72568442-72568461 Msa0570410:CDS 30.0%
GAGTCAAATCTACCTTAATA+TGG - chr4_1:72568515-72568534 None:intergenic 30.0%
TAAGGTAGATTTGACTCAAA+AGG + chr4_1:72568518-72568537 Msa0570410:CDS 30.0%
AGTTCATTTGGATCAAAAAC+AGG - chr4_1:72568582-72568601 None:intergenic 30.0%
ATATTCAAACTGAAAGAGAG+GGG - chr4_1:72569330-72569349 None:intergenic 30.0%
TGTGCTAGATTAACATTAAC+AGG + chr4_1:72569805-72569824 Msa0570410:three_prime_UTR 30.0%
GGTAAATGTGAAAAAAGGTC+CGG + chr4_1:72564953-72564972 Msa0570410:five_prime_UTR 35.0%
! AGGTTTCTAGAAGCTTAGAA+GGG - chr4_1:72565231-72565250 None:intergenic 35.0%
!! GTATTTTAGGTGGTTTCTAG+AGG - chr4_1:72565251-72565270 None:intergenic 35.0%
!! GGGTATTTGTGTATTTTAGG+TGG - chr4_1:72565261-72565280 None:intergenic 35.0%
!!! CAGGGGTATTTGTGTATTTT+AGG - chr4_1:72565264-72565283 None:intergenic 35.0%
GTAGTATTTATAGCCTGCTA+TGG - chr4_1:72565319-72565338 None:intergenic 35.0%
!! TACTCTTGAGAGTATTCTCA+AGG + chr4_1:72565336-72565355 Msa0570410:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG - chr4_1:72565365-72565384 None:intergenic 35.0%
GTAAGGAATACTAGGATTCT+AGG - chr4_1:72565383-72565402 None:intergenic 35.0%
AAAGTACGGTAAGGAATACT+AGG - chr4_1:72565391-72565410 None:intergenic 35.0%
! TACTTGCAAAAAGTACGGTA+AGG - chr4_1:72565400-72565419 None:intergenic 35.0%
!! GTACTTTTTGCAAGTACAGT+TGG + chr4_1:72565404-72565423 Msa0570410:intron 35.0%
!! AGTAAACGTAAAGGTACTCT+TGG + chr4_1:72565586-72565605 Msa0570410:intron 35.0%
GCAGAAACAGAAACAAACTT+GGG - chr4_1:72565614-72565633 None:intergenic 35.0%
TCTGCAGTTAACCATAATGA+TGG + chr4_1:72566041-72566060 Msa0570410:CDS 35.0%
AAAGCAAGCTACCATCATTA+TGG - chr4_1:72566055-72566074 None:intergenic 35.0%
ATCTTCGTGCTCAAATGTTA+AGG - chr4_1:72566096-72566115 None:intergenic 35.0%
!!! AGCACGAAGATGTTTTAGTT+AGG + chr4_1:72566105-72566124 Msa0570410:intron 35.0%
!!! GCACGAAGATGTTTTAGTTA+GGG + chr4_1:72566106-72566125 Msa0570410:intron 35.0%
!!! GAAGATGTTTTAGTTAGGGA+AGG + chr4_1:72566110-72566129 Msa0570410:intron 35.0%
TTTAGTTAGGGAAGGATTTG+TGG + chr4_1:72566118-72566137 Msa0570410:intron 35.0%
CACACAAACCTACCTTATTA+TGG + chr4_1:72566224-72566243 Msa0570410:intron 35.0%
! GAATTCTTGAAGGGTAGTTT+TGG - chr4_1:72566404-72566423 None:intergenic 35.0%
! AAAATGGAAAGAGTACGTAC+TGG + chr4_1:72566435-72566454 Msa0570410:intron 35.0%
GTGGCTCAGATATAAATTTC+AGG - chr4_1:72566646-72566665 None:intergenic 35.0%
! TTTTGAATCACAGCTGTTGA+TGG + chr4_1:72566850-72566869 Msa0570410:CDS 35.0%
ACCTGACATTACTTCAAATG+AGG + chr4_1:72566961-72566980 Msa0570410:CDS 35.0%
CCTGACATTACTTCAAATGA+GGG + chr4_1:72566962-72566981 Msa0570410:CDS 35.0%
! TGTGATTTTACAAACAACGG+AGG + chr4_1:72567025-72567044 Msa0570410:CDS 35.0%
! GTGATTTTACAAACAACGGA+GGG + chr4_1:72567026-72567045 Msa0570410:CDS 35.0%
! TGATTTTACAAACAACGGAG+GGG + chr4_1:72567027-72567046 Msa0570410:CDS 35.0%
TAAAACTACTTCAGAAGCAG+AGG + chr4_1:72567054-72567073 Msa0570410:CDS 35.0%
TGATATCTGGATCCAACTTT+AGG + chr4_1:72567146-72567165 Msa0570410:CDS 35.0%
GATATCTGGATCCAACTTTA+GGG + chr4_1:72567147-72567166 Msa0570410:CDS 35.0%
AATCATATCAGCCCTAAAGT+TGG - chr4_1:72567161-72567180 None:intergenic 35.0%
TATCAATGGAATGAGTGACA+TGG + chr4_1:72567542-72567561 Msa0570410:intron 35.0%
TTGCATAGCAAGTTCTTAGT+TGG + chr4_1:72567567-72567586 Msa0570410:intron 35.0%
GTTCTTAGTTGGAAATGTGA+TGG + chr4_1:72567578-72567597 Msa0570410:intron 35.0%
TGAAGCACAAACAACTAAAC+GGG - chr4_1:72567657-72567676 None:intergenic 35.0%
TGAAAAGGAAAATCGGGATA+TGG + chr4_1:72568236-72568255 Msa0570410:CDS 35.0%
AAGACACCCATGATGTTAAA+TGG + chr4_1:72568307-72568326 Msa0570410:CDS 35.0%
AGACACCCATGATGTTAAAT+GGG + chr4_1:72568308-72568327 Msa0570410:CDS 35.0%
GATTTGCCCATTTAACATCA+TGG - chr4_1:72568317-72568336 None:intergenic 35.0%
GTTAAATGGGCAAATCATGA+TGG + chr4_1:72568321-72568340 Msa0570410:CDS 35.0%
AATCATGATGGTAGAGATCA+AGG + chr4_1:72568333-72568352 Msa0570410:CDS 35.0%
CAACTTCAGTGAAGAATAGA+AGG + chr4_1:72568424-72568443 Msa0570410:CDS 35.0%
CTACATCATTGCCCATATTA+AGG + chr4_1:72568500-72568519 Msa0570410:CDS 35.0%
CAGATCAAACAGCTTGTATT+CGG - chr4_1:72568900-72568919 None:intergenic 35.0%
!! CAACCACATGAATTTGTTAC+CGG - chr4_1:72569265-72569284 None:intergenic 35.0%
TATTCAAACTGAAAGAGAGG+GGG - chr4_1:72569329-72569348 None:intergenic 35.0%
AATAAGAACGAATCGACATG+AGG - chr4_1:72569413-72569432 None:intergenic 35.0%
! GTTTTACTTCAGTGAATGAC+AGG - chr4_1:72569516-72569535 None:intergenic 35.0%
ACGTTTGATATTGAAGGCTA+CGG + chr4_1:72569757-72569776 Msa0570410:three_prime_UTR 35.0%
! TTTCTAGAAGCTTAGAAGGG+CGG - chr4_1:72565228-72565247 None:intergenic 40.0%
! GAGGTTTCTAGAAGCTTAGA+AGG - chr4_1:72565232-72565251 None:intergenic 40.0%
CGCAGAAACAGAAACAAACT+TGG - chr4_1:72565615-72565634 None:intergenic 40.0%
CGATCATCAGCAAAATCAAG+AGG - chr4_1:72565735-72565754 None:intergenic 40.0%
! CTTGATTTTGCTGATGATCG+TGG + chr4_1:72565735-72565754 Msa0570410:CDS 40.0%
CATCTGAGAAGTCATCTTCT+GGG + chr4_1:72565799-72565818 Msa0570410:CDS 40.0%
!! ATCTTCTGGGATCTGTGTTA+TGG + chr4_1:72565812-72565831 Msa0570410:CDS 40.0%
!! TCTTCTGGGATCTGTGTTAT+GGG + chr4_1:72565813-72565832 Msa0570410:CDS 40.0%
GTGTTATGGGAAACTCTTCT+TGG + chr4_1:72565826-72565845 Msa0570410:CDS 40.0%
!! TTGCTTTTCTTCGAGGATTC+TGG + chr4_1:72566068-72566087 Msa0570410:CDS 40.0%
AAGGATTTGTGGACAGGTTA+GGG + chr4_1:72566129-72566148 Msa0570410:intron 40.0%
TAAGGTAGGTTTGTGTGCTA+AGG - chr4_1:72566221-72566240 None:intergenic 40.0%
AGGTAGAAGGATCACCATAA+AGG - chr4_1:72566291-72566310 None:intergenic 40.0%
! TGGTAACGATGAAAGGTAGA+AGG - chr4_1:72566304-72566323 None:intergenic 40.0%
ACCTTTCATCGTTACCATAG+AGG + chr4_1:72566307-72566326 Msa0570410:CDS 40.0%
! TCCTCTATGGTAACGATGAA+AGG - chr4_1:72566311-72566330 None:intergenic 40.0%
GCTCTAACAAGAATCCTCTA+TGG - chr4_1:72566324-72566343 None:intergenic 40.0%
TTGTTGCCATAGATAGGTCA+GGG - chr4_1:72566556-72566575 None:intergenic 40.0%
TTTGTTGCCATAGATAGGTC+AGG - chr4_1:72566557-72566576 None:intergenic 40.0%
GGCAACAAATAGTATTTGGG+AGG + chr4_1:72566568-72566587 Msa0570410:CDS 40.0%
! ATAGGTAGTTTCTTTGGGGA+GGG - chr4_1:72566668-72566687 None:intergenic 40.0%
! AATAGGTAGTTTCTTTGGGG+AGG - chr4_1:72566669-72566688 None:intergenic 40.0%
TCACGTGATTCAAAACTGCA+AGG + chr4_1:72566758-72566777 Msa0570410:intron 40.0%
! CCCTCATTTGAAGTAATGTC+AGG - chr4_1:72566965-72566984 None:intergenic 40.0%
ATTACTTCAAATGAGGGAGC+TGG + chr4_1:72566968-72566987 Msa0570410:CDS 40.0%
AAGAACGGTAAATGCTTTCC+TGG + chr4_1:72567202-72567221 Msa0570410:intron 40.0%
GAGATCATTGCTCTTAAACC+AGG - chr4_1:72567223-72567242 None:intergenic 40.0%
GCAAGCATATCACCAGTTTA+GGG + chr4_1:72567267-72567286 Msa0570410:CDS 40.0%
!! GGAAATGTGATGGACCAAAT+TGG + chr4_1:72567588-72567607 Msa0570410:intron 40.0%
GCATGGCATAACAATCACAA+TGG + chr4_1:72567620-72567639 Msa0570410:intron 40.0%
! ATGGACTGATGATGAGTTTG+TGG + chr4_1:72567916-72567935 Msa0570410:intron 40.0%
AGGCCATGGTTATGATATCA+TGG + chr4_1:72568353-72568372 Msa0570410:intron 40.0%
CAGCCATGATATCATAACCA+TGG - chr4_1:72568359-72568378 None:intergenic 40.0%
ATTCTTCAAAGGGCCTATTC+TGG - chr4_1:72568754-72568773 None:intergenic 40.0%
! AGACAGTGAATTTGAAGCCA+TGG + chr4_1:72569083-72569102 Msa0570410:intron 40.0%
!! GTAAATAGCTTTAAAGGGCC+AGG - chr4_1:72569117-72569136 None:intergenic 40.0%
TGCCTTAACTTCAGACAGTA+GGG - chr4_1:72569208-72569227 None:intergenic 40.0%
TTGTTACCGGCAGAAAATTC+CGG - chr4_1:72569252-72569271 None:intergenic 40.0%
!! CTAGTTTTCCTATGCCTTTC+CGG + chr4_1:72569285-72569304 Msa0570410:intron 40.0%
ATTCAAACTGAAAGAGAGGG+GGG - chr4_1:72569328-72569347 None:intergenic 40.0%
CAGTGAATGACAGGCTATAA+GGG - chr4_1:72569507-72569526 None:intergenic 40.0%
TCAGTGAATGACAGGCTATA+AGG - chr4_1:72569508-72569527 None:intergenic 40.0%
TTAGGAGATGCTTGCTTTCT+TGG + chr4_1:72569547-72569566 Msa0570410:three_prime_UTR 40.0%
TGATGTTGGCATGAGAATCA+TGG + chr4_1:72569642-72569661 Msa0570410:three_prime_UTR 40.0%
AATCATGGCTTTCTGCATGT+TGG + chr4_1:72569657-72569676 Msa0570410:three_prime_UTR 40.0%
GTCTCAAGAGCCCTTATTGA+GGG - chr4_1:72565182-72565201 None:intergenic 45.0%
AATAAGGGCTCTTGAGACCT+TGG + chr4_1:72565184-72565203 Msa0570410:intron 45.0%
ACACAAATACCCCTGTTGCT+TGG + chr4_1:72565269-72565288 Msa0570410:intron 45.0%
! CACAAATACCCCTGTTGCTT+GGG + chr4_1:72565270-72565289 Msa0570410:intron 45.0%
TTATAGCCTGCTATGGGCTT+GGG - chr4_1:72565312-72565331 None:intergenic 45.0%
TTTATAGCCTGCTATGGGCT+TGG - chr4_1:72565313-72565332 None:intergenic 45.0%
! GTTTTACCTCTTCCCACAGA+CGG - chr4_1:72565432-72565451 None:intergenic 45.0%
!! TCACGAGTCAGTGATTTGCT+TGG + chr4_1:72565773-72565792 Msa0570410:CDS 45.0%
CCAGAAGATGACTTCTCAGA+TGG - chr4_1:72565801-72565820 None:intergenic 45.0%
CCATCTGAGAAGTCATCTTC+TGG + chr4_1:72565798-72565817 Msa0570410:CDS 45.0%
!! CGTCATTTTAGATCCGTCAC+TGG - chr4_1:72565967-72565986 None:intergenic 45.0%
!!! TGGTAGCTTGCTTTTCTTCG+AGG + chr4_1:72566061-72566080 Msa0570410:CDS 45.0%
TTAGGGAAGGATTTGTGGAC+AGG + chr4_1:72566123-72566142 Msa0570410:intron 45.0%
GAAGGATTTGTGGACAGGTT+AGG + chr4_1:72566128-72566147 Msa0570410:intron 45.0%
TTCAAGCTTATCCTGGAGCA+AGG + chr4_1:72566174-72566193 Msa0570410:CDS 45.0%
TCAAGCTTATCCTGGAGCAA+GGG + chr4_1:72566175-72566194 Msa0570410:CDS 45.0%
TGCAGTGCCCATAATAAGGT+AGG - chr4_1:72566235-72566254 None:intergenic 45.0%
GAAGTGCAGTGCCCATAATA+AGG - chr4_1:72566239-72566258 None:intergenic 45.0%
CTCAAACCCTGACCTATCTA+TGG + chr4_1:72566547-72566566 Msa0570410:CDS 45.0%
ATTGCCGCGATTGTTTATGC+TGG + chr4_1:72566620-72566639 Msa0570410:CDS 45.0%
TCAAATGAGGGAGCTGGAAT+TGG + chr4_1:72566974-72566993 Msa0570410:CDS 45.0%
AAGTACTTCGCAGAGCTCAA+AGG + chr4_1:72566997-72567016 Msa0570410:intron 45.0%
ATGGATCCTGTCGTGATATC+TGG + chr4_1:72567133-72567152 Msa0570410:CDS 45.0%
TTGGATCCAGATATCACGAC+AGG - chr4_1:72567142-72567161 None:intergenic 45.0%
GGGCTGATATGATTGCCTTA+CGG + chr4_1:72567167-72567186 Msa0570410:CDS 45.0%
GGCTGATATGATTGCCTTAC+GGG + chr4_1:72567168-72567187 Msa0570410:CDS 45.0%
CGCAAGCATATCACCAGTTT+AGG + chr4_1:72567266-72567285 Msa0570410:CDS 45.0%
AGCATATCACCAGTTTAGGG+AGG + chr4_1:72567270-72567289 Msa0570410:CDS 45.0%
! CTGATGATGAGTTTGTGGCT+AGG + chr4_1:72567921-72567940 Msa0570410:intron 45.0%
TGATATCATGGCTGAGCCAA+AGG + chr4_1:72568365-72568384 Msa0570410:intron 45.0%
TGAGCCAAAGGAAGGTCATA+CGG + chr4_1:72568377-72568396 Msa0570410:intron 45.0%
!! GCAGTATGAACTTGCTGGAA+AGG + chr4_1:72568467-72568486 Msa0570410:CDS 45.0%
!! TGAATTTGTTGCAGTCCCGA+TGG + chr4_1:72568717-72568736 Msa0570410:intron 45.0%
CTGTTTGATCTGCCAAAGCT+AGG + chr4_1:72568908-72568927 Msa0570410:intron 45.0%
GAAGCCATGGACTTTATTCC+TGG + chr4_1:72569096-72569115 Msa0570410:intron 45.0%
CCATCAGCAACTACTGTTAC+TGG - chr4_1:72569165-72569184 None:intergenic 45.0%
CCAGTAACAGTAGTTGCTGA+TGG + chr4_1:72569162-72569181 Msa0570410:intron 45.0%
! ACCCCTACTGTCTGAAGTTA+AGG + chr4_1:72569203-72569222 Msa0570410:intron 45.0%
GCCTTAACTTCAGACAGTAG+GGG - chr4_1:72569207-72569226 None:intergenic 45.0%
CTGCCTTAACTTCAGACAGT+AGG - chr4_1:72569209-72569228 None:intergenic 45.0%
! CTTGAACCGGAATTTTCTGC+CGG + chr4_1:72569243-72569262 Msa0570410:intron 45.0%
CTGCCGGTAACAAATTCATG+TGG + chr4_1:72569259-72569278 Msa0570410:intron 45.0%
TTCAAACTGAAAGAGAGGGG+GGG - chr4_1:72569327-72569346 None:intergenic 45.0%
CTCTAAGCTGGGACAAATCT+AGG - chr4_1:72569479-72569498 None:intergenic 45.0%
!! TAAGGGATGAGCTCTAAGCT+GGG - chr4_1:72569490-72569509 None:intergenic 45.0%
!! ATAAGGGATGAGCTCTAAGC+TGG - chr4_1:72569491-72569510 None:intergenic 45.0%
TGCTTGCTTTCTTGGTGGAA+AGG + chr4_1:72569555-72569574 Msa0570410:three_prime_UTR 45.0%
GCTTTCTTGGTGGAAAGGAT+TGG + chr4_1:72569560-72569579 Msa0570410:three_prime_UTR 45.0%
!!! TTTTTTATAATGATTTTATT+TGG + chr4_1:72565918-72565937 Msa0570410:intron 5.0%
!! TATATTTAACAAATATAATA+AGG - chr4_1:72566511-72566530 None:intergenic 5.0%
TGGAGGTCTTAGAGCCTTTC+TGG - chr4_1:72565145-72565164 None:intergenic 50.0%
!! AAGGCTCTAAGACCTCCAGA+AGG + chr4_1:72565147-72565166 Msa0570410:intron 50.0%
!! AGGCTCTAAGACCTCCAGAA+GGG + chr4_1:72565148-72565167 Msa0570410:intron 50.0%
GGTCTCAAGAGCCCTTATTG+AGG - chr4_1:72565183-72565202 None:intergenic 50.0%
TGCTTGGTTCCCAAGCAACA+GGG - chr4_1:72565282-72565301 None:intergenic 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG - chr4_1:72565283-72565302 None:intergenic 50.0%
CAGGCCAGCATAAACAATCG+CGG - chr4_1:72566627-72566646 None:intergenic 50.0%
!! GAATCACAGCTGTTGATGGC+CGG + chr4_1:72566854-72566873 Msa0570410:CDS 50.0%
TACTTCGCAGAGCTCAAAGG+TGG + chr4_1:72567000-72567019 Msa0570410:intron 50.0%
! AATGATCTCTGCGAAGCACC+AGG + chr4_1:72567234-72567253 Msa0570410:CDS 50.0%
TGAGCTGGACCTGTTTGACA+AGG + chr4_1:72567294-72567313 Msa0570410:CDS 50.0%
TGACTAAGGCTGACATGCGT+GGG - chr4_1:72567517-72567536 None:intergenic 50.0%
ATGACTAAGGCTGACATGCG+TGG - chr4_1:72567518-72567537 None:intergenic 50.0%
GATGGTAGAGATCAAGGCCA+TGG + chr4_1:72568339-72568358 Msa0570410:CDS 50.0%
ATCATGGCTGAGCCAAAGGA+AGG + chr4_1:72568369-72568388 Msa0570410:intron 50.0%
GAGCCAAAGGAAGGTCATAC+GGG + chr4_1:72568378-72568397 Msa0570410:intron 50.0%
ATGCCCGTATGACCTTCCTT+TGG - chr4_1:72568384-72568403 None:intergenic 50.0%
! AGTAAGGAGAAGCGTGTGAC+AGG + chr4_1:72568618-72568637 Msa0570410:CDS 50.0%
! ATTTGTTGCAGTCCCGATGG+TGG + chr4_1:72568720-72568739 Msa0570410:intron 50.0%
!! TCTGGTACTGGTACCACCAT+CGG - chr4_1:72568736-72568755 None:intergenic 50.0%
GGTGGTACCAGTACCAGAAT+AGG + chr4_1:72568738-72568757 Msa0570410:intron 50.0%
CAAAGGGCCTATTCTGGTAC+TGG - chr4_1:72568748-72568767 None:intergenic 50.0%
!! TTTTCGGGGTAGCCTAGCTT+TGG - chr4_1:72568923-72568942 None:intergenic 50.0%
AGGGCCAGGAATAAAGTCCA+TGG - chr4_1:72569103-72569122 None:intergenic 50.0%
TCAAACTGAAAGAGAGGGGG+GGG - chr4_1:72569326-72569345 None:intergenic 50.0%
GGAGATGCTTGCTTTCTTGG+TGG + chr4_1:72569550-72569569 Msa0570410:three_prime_UTR 50.0%
TAAGACCTCCAGAAGGGCTC+AGG + chr4_1:72565154-72565173 Msa0570410:intron 55.0%
GCTTGGTTCCCAAGCAACAG+GGG - chr4_1:72565281-72565300 None:intergenic 55.0%
CCTGCTATGGGCTTGGGTTT+CGG - chr4_1:72565306-72565325 None:intergenic 55.0%
ATCCTGGAGCAAGGGTAGCA+AGG + chr4_1:72566183-72566202 Msa0570410:CDS 55.0%
! GGTAGTTTCTTTGGGGAGGG+TGG - chr4_1:72566665-72566684 None:intergenic 55.0%
CTTGTCGAGATCGTCCCGTA+AGG - chr4_1:72567185-72567204 None:intergenic 55.0%
CGGGACGATCTCGACAAGAA+CGG + chr4_1:72567187-72567206 Msa0570410:CDS 55.0%
CCAGCTCATCCTCCCTAAAC+TGG - chr4_1:72567282-72567301 None:intergenic 55.0%
CCAGTTTAGGGAGGATGAGC+TGG + chr4_1:72567279-72567298 Msa0570410:CDS 55.0%
GACTAAGGCTGACATGCGTG+GGG - chr4_1:72567516-72567535 None:intergenic 55.0%
GGCATGCTTCTCAGCATCTC+TGG - chr4_1:72568262-72568281 None:intergenic 55.0%
AGGGCGCAGTATGAACTTGC+TGG + chr4_1:72568462-72568481 Msa0570410:CDS 55.0%
!! GAACTTGCTGGAAAGGCTGC+TGG + chr4_1:72568474-72568493 Msa0570410:CDS 55.0%
!! CTGGTACTGGTACCACCATC+GGG - chr4_1:72568735-72568754 None:intergenic 55.0%
AAACTGAAAGAGAGGGGGGG+GGG - chr4_1:72569324-72569343 None:intergenic 55.0%
CAAACTGAAAGAGAGGGGGG+GGG - chr4_1:72569325-72569344 None:intergenic 55.0%
GGCTCAGGCGCCCTCAATAA+GGG + chr4_1:72565169-72565188 Msa0570410:intron 60.0%
CTTAGAAGGGCGGTGCCTCA+AGG - chr4_1:72565218-72565237 None:intergenic 60.0%
GGGCTTGGGTTTCGGTTGCT+TGG - chr4_1:72565298-72565317 None:intergenic 60.0%
CCGAAACCCAAGCCCATAGC+AGG + chr4_1:72565303-72565322 Msa0570410:intron 60.0%
AGTACAGTTGGCGCCGTCTG+TGG + chr4_1:72565416-72565435 Msa0570410:intron 60.0%
GTACAGTTGGCGCCGTCTGT+GGG + chr4_1:72565417-72565436 Msa0570410:intron 60.0%
CACCTTGCTACCCTTGCTCC+AGG - chr4_1:72566188-72566207 None:intergenic 60.0%
AGACTGGAATGCACCGCAGC+CGG - chr4_1:72566876-72566895 None:intergenic 60.0%
! TGCGAAGCACCAGGAAGCTC+AGG + chr4_1:72567243-72567262 Msa0570410:CDS 60.0%
ATGCTTGCGCCTGAGCTTCC+TGG - chr4_1:72567255-72567274 None:intergenic 60.0%
AACTGAAAGAGAGGGGGGGG+GGG - chr4_1:72569323-72569342 None:intergenic 60.0%
GGGCTCAGGCGCCCTCAATA+AGG + chr4_1:72565168-72565187 Msa0570410:intron 65.0%
ACCTTGGCGCTCTCGCCTTG+AGG + chr4_1:72565200-72565219 Msa0570410:intron 65.0%
TTGGCGCCGTCTGTGGGAAG+AGG + chr4_1:72565423-72565442 Msa0570410:intron 65.0%
!! CAGCTGTTGATGGCCGGCTG+CGG + chr4_1:72566860-72566879 Msa0570410:CDS 65.0%
! GGGGGAAGCCGGAAAGGCAT+AGG - chr4_1:72569296-72569315 None:intergenic 65.0%
ACTGAAAGAGAGGGGGGGGG+GGG - chr4_1:72569322-72569341 None:intergenic 65.0%
GGGGAGAGTAGCGGTTGCGG+CGG - chr4_1:72565021-72565040 None:intergenic 70.0%
!! TGAGGGCGCCTGAGCCCTTC+TGG - chr4_1:72565165-72565184 None:intergenic 70.0%
!! GCCTCAAGGCGAGAGCGCCA+AGG - chr4_1:72565204-72565223 None:intergenic 70.0%
TGAAAGAGAGGGGGGGGGGG+GGG - chr4_1:72569320-72569339 None:intergenic 70.0%
CTGAAAGAGAGGGGGGGGGG+GGG - chr4_1:72569321-72569340 None:intergenic 70.0%
GGGCGCCTGAGCCCTTCTGG+AGG - chr4_1:72565162-72565181 None:intergenic 75.0%
AAAGAGAGGGGGGGGGGGGG+GGG - chr4_1:72569318-72569337 None:intergenic 75.0%
GAAAGAGAGGGGGGGGGGGG+GGG - chr4_1:72569319-72569338 None:intergenic 75.0%
! GGGGGGGGGGGAAGCCGGAA+AGG - chr4_1:72569302-72569321 None:intergenic 80.0%
! AAGAGAGGGGGGGGGGGGGG+GGG - chr4_1:72569317-72569336 None:intergenic 80.0%
! AGAGAGGGGGGGGGGGGGGG+GGG - chr4_1:72569316-72569335 None:intergenic 85.0%
! GGGGGGGGGGGGGGGGAAGC+CGG - chr4_1:72569307-72569326 None:intergenic 90.0%
! AGAGGGGGGGGGGGGGGGGG+GGG - chr4_1:72569314-72569333 None:intergenic 90.0%
! GAGAGGGGGGGGGGGGGGGG+GGG - chr4_1:72569315-72569334 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 72564928 72569890 72564928 ID=Msa0570410;Name=Msa0570410
chr4_1 mRNA 72564928 72569890 72564928 ID=Msa0570410-mRNA-1;Parent=Msa0570410;Name=Msa0570410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|0.46|0.31|1|0.33|0.18|16|378|602
chr4_1 exon 72564928 72565040 72564928 ID=Msa0570410-mRNA-1:exon:24793;Parent=Msa0570410-mRNA-1
chr4_1 exon 72565559 72565598 72565559 ID=Msa0570410-mRNA-1:exon:24794;Parent=Msa0570410-mRNA-1
chr4_1 exon 72565679 72565847 72565679 ID=Msa0570410-mRNA-1:exon:24795;Parent=Msa0570410-mRNA-1
chr4_1 exon 72565950 72566115 72565950 ID=Msa0570410-mRNA-1:exon:24796;Parent=Msa0570410-mRNA-1
chr4_1 exon 72566123 72566136 72566123 ID=Msa0570410-mRNA-1:exon:24797;Parent=Msa0570410-mRNA-1
chr4_1 exon 72566145 72566204 72566145 ID=Msa0570410-mRNA-1:exon:24798;Parent=Msa0570410-mRNA-1
chr4_1 exon 72566288 72566446 72566288 ID=Msa0570410-mRNA-1:exon:24799;Parent=Msa0570410-mRNA-1
chr4_1 exon 72566538 72566761 72566538 ID=Msa0570410-mRNA-1:exon:24800;Parent=Msa0570410-mRNA-1
chr4_1 exon 72566780 72566891 72566780 ID=Msa0570410-mRNA-1:exon:24801;Parent=Msa0570410-mRNA-1
chr4_1 exon 72566920 72566998 72566920 ID=Msa0570410-mRNA-1:exon:24802;Parent=Msa0570410-mRNA-1
chr4_1 exon 72567019 72567208 72567019 ID=Msa0570410-mRNA-1:exon:24803;Parent=Msa0570410-mRNA-1
chr4_1 exon 72567233 72567360 72567233 ID=Msa0570410-mRNA-1:exon:24804;Parent=Msa0570410-mRNA-1
chr4_1 exon 72568210 72568360 72568210 ID=Msa0570410-mRNA-1:exon:24805;Parent=Msa0570410-mRNA-1
chr4_1 exon 72568391 72568639 72568391 ID=Msa0570410-mRNA-1:exon:24806;Parent=Msa0570410-mRNA-1
chr4_1 exon 72568731 72568738 72568731 ID=Msa0570410-mRNA-1:exon:24807;Parent=Msa0570410-mRNA-1
chr4_1 exon 72569444 72569890 72569444 ID=Msa0570410-mRNA-1:exon:24808;Parent=Msa0570410-mRNA-1
chr4_1 five_prime_UTR 72564928 72565040 72564928 ID=Msa0570410-mRNA-1:five_prime_utr;Parent=Msa0570410-mRNA-1
chr4_1 five_prime_UTR 72565559 72565567 72565559 ID=Msa0570410-mRNA-1:five_prime_utr;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72565568 72565598 72565568 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72565679 72565847 72565679 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72565950 72566115 72565950 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72566123 72566136 72566123 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72566145 72566204 72566145 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72566288 72566446 72566288 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72566538 72566761 72566538 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72566780 72566891 72566780 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72566920 72566998 72566920 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72567019 72567208 72567019 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72567233 72567360 72567233 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72568210 72568360 72568210 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72568391 72568639 72568391 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72568731 72568738 72568731 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 CDS 72569444 72569512 72569444 ID=Msa0570410-mRNA-1:cds;Parent=Msa0570410-mRNA-1
chr4_1 three_prime_UTR 72569513 72569890 72569513 ID=Msa0570410-mRNA-1:three_prime_utr;Parent=Msa0570410-mRNA-1
Gene Sequence

>Msa0570410

ATGGCTGGGGATGATGATAGTAAACGTAAAGTTTTAGTGACGGATGAATATAGAGCAAATTTTCGACATGTTATTCGTTCGTATCCTCTTGATTTTGCTGATGATCGTGGAGAAAATTCATTGTATCACGAGTCAGTGATTTGCTTGGTTCCATCTGAGAAGTCATCTTCTGGGATCTGTGTTATGGGAAACTCTTCTTGGAATTACAGATATTCCAGTGACGGATCTAAAATGACGATTTCAGTTGTTGATGATAAGAATGGTTTTGCCGTCTGTTCAGATGCTATTATTTCTGCAGTTAACCATAATGATGGTAGCTTGCTTTTCTTCGAGGATTCTGGAACCTTAACATTTGAGCACGAAGATTTAGGGAAGGATTTGTTAGGGAAAGTAAAATTGCTTATTCAAATTCAAGCTTATCCTGGAGCAAGGGTAGCAAGCCTTTATGGTGATCCTTCTACCTTTCATCGTTACCATAGAGGATTCTTGTTAGAGCTATATTGGGTTAATAAGAGACTGGTCGACGACTGTTTTACTAAAATCTTCGATGACACCAAAACTACCCTTCAAGAATTCAAGAAAGAAAAAAAATGGAAAGAGTATTTGAACTCAAACCCTGACCTATCTATGGCAACAAATAGTATTTGGGAGGCACTAATGACCTACTGTGAACACTGTATTATTGCCGCGATTGTTTATGCTGGCCTGAAATTTATATCTGAGCCACCCTCCCCAAAGAAACTACCTATTTTTGTCAAAAAAAGTGACAAAGAAAGTGAACACAAGAAGTTTTGCTTGATAGATAATATTAAGGATTTGTCACGCTTAAATTTGAACAAATTTAAGTTGAGAGAATTACACAATAATCAACTTAATTGTGATGGTGTTAAGTCTTTTGAATCACAGCTGTTGATGGCCGGCTGCGGTGCATTCCACAATCCTATTATGCGTATACTTTTCTTAATACAACTGAAGAACCTGACATTACTTCAAATGAGGGAGCTGGAATTGGAAGTGGAATGTGATTTTACAAACAACGGAGGGGATGATAAAACTACTTCAGAAGCAGAGGAAGCAGAGCAAAAAAAATGTTTTGAAAAAAGAGCTGAGGAATCATACAAAATTCGTATGGATCCTGTCGTGATATCTGGATCCAACTTTAGGGCTGATATGATTGCCTTACGGGACGATCTCGACAAGAACGCAATGATCTCTGCGAAGCACCAGGAAGCTCAGGCGCAAGCATATCACCAGTTTAGGGAGGATGAGCTGGACCTGTTTGACAAGGATGAAATTATTCTTAGGGAAAAAAGTTATATTGAAAAGAAATCTAATGCTGTAAAGATTCTTGAAAGATCTGAAAAGGAAAATCGGGATATGGCCAGAGATGCTGAGAAGCATGCCCATAAATATTACGTTGAGAAGTTTAAAGACACCCATGATGTTAAATGGGCAAATCATGATGGTAGAGATCAAGGCCATGGTCATACGGGCATTAAGTATATAGAAGTTAAGTCAACTTCAGTGAAGAATAGAAGGCATTTTAAATTTAGCAGGGCGCAGTATGAACTTGCTGGAAAGGCTGCTGGTGACTACATCATTGCCCATATTAAGGTAGATTTGACTCAAAAGGATGATAACAAAAAATATACATTTACAGAATACATCAATCCTGTTTTTGATCCAAATGAACTAGATCTTTTCATGTATAGTAAGGAGAAGCGTGTGACAGTCCCGATGGAAGGTGTTCAGCAGCTTGTTCTAGATTCTAGCCTAGATTTGTCCCAGCTTAGAGCTCATCCCTTATAG

Protein sequence

>Msa0570410

MAGDDDSKRKVLVTDEYRANFRHVIRSYPLDFADDRGENSLYHESVICLVPSEKSSSGICVMGNSSWNYRYSSDGSKMTISVVDDKNGFAVCSDAIISAVNHNDGSLLFFEDSGTLTFEHEDLGKDLLGKVKLLIQIQAYPGARVASLYGDPSTFHRYHRGFLLELYWVNKRLVDDCFTKIFDDTKTTLQEFKKEKKWKEYLNSNPDLSMATNSIWEALMTYCEHCIIAAIVYAGLKFISEPPSPKKLPIFVKKSDKESEHKKFCLIDNIKDLSRLNLNKFKLRELHNNQLNCDGVKSFESQLLMAGCGAFHNPIMRILFLIQLKNLTLLQMRELELEVECDFTNNGGDDKTTSEAEEAEQKKCFEKRAEESYKIRMDPVVISGSNFRADMIALRDDLDKNAMISAKHQEAQAQAYHQFREDELDLFDKDEIILREKSYIEKKSNAVKILERSEKENRDMARDAEKHAHKYYVEKFKDTHDVKWANHDGRDQGHGHTGIKYIEVKSTSVKNRRHFKFSRAQYELAGKAAGDYIIAHIKVDLTQKDDNKKYTFTEYINPVFDPNELDLFMYSKEKRVTVPMEGVQQLVLDSSLDLSQLRAHPL*