Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570380 | AET04564.1 | 97.906 | 191 | 4 | 0 | 45 | 235 | 1 | 191 | 7.44e-120 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570380 | G7LB84 | 97.906 | 191 | 4 | 0 | 45 | 235 | 1 | 191 | 3.55e-120 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0541680 | Msa0570380 | 0.829595 | 4.713669e-55 | -8.615850e-47 |
| Msa0567670 | Msa0570380 | 0.831453 | 1.655026e-55 | -8.615850e-47 |
| Msa0567690 | Msa0570380 | 0.811855 | 5.681717e-51 | -8.615850e-47 |
| Msa0567710 | Msa0570380 | 0.807740 | 4.360500e-50 | -8.615850e-47 |
| Msa0567910 | Msa0570380 | 0.820843 | 5.536942e-53 | -8.615850e-47 |
| Msa0567960 | Msa0570380 | 0.818867 | 1.566652e-52 | -8.615850e-47 |
| Msa0570150 | Msa0570380 | 0.842290 | 2.830461e-58 | -8.615850e-47 |
| Msa0570210 | Msa0570380 | 0.890096 | 1.341158e-73 | -8.615850e-47 |
| Msa0570280 | Msa0570380 | 0.891014 | 5.842774e-74 | -8.615850e-47 |
| Msa0570300 | Msa0570380 | 0.870654 | 1.239427e-66 | -8.615850e-47 |
| Msa0570360 | Msa0570380 | 0.900954 | 4.365720e-78 | -8.615850e-47 |
| Msa0570370 | Msa0570380 | 0.934292 | 5.064054e-96 | -8.615850e-47 |
| Msa0570380 | Msa0570410 | 0.943868 | 5.524880e-103 | -8.615850e-47 |
| Msa0570380 | Msa0570720 | 0.840605 | 7.864456e-58 | -8.615850e-47 |
| Msa0570380 | Msa0570730 | 0.874783 | 5.157413e-68 | -8.615850e-47 |
| Msa0570380 | Msa0570800 | 0.828326 | 9.568553e-55 | -8.615850e-47 |
| Msa0570380 | Msa0570820 | 0.851607 | 7.950956e-61 | -8.615850e-47 |
| Msa0570380 | Msa0570840 | 0.833522 | 5.082960e-56 | -8.615850e-47 |
| Msa0570380 | Msa0570880 | 0.819979 | 8.737078e-53 | -8.615850e-47 |
| Msa0570380 | Msa0570910 | 0.943398 | 1.293669e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570380 | MtrunA17_Chr8g0382831 | 97.906 | 191 | 4 | 0 | 45 | 235 | 1 | 191 | 6.85e-124 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAAGCTTCATACATTT+TGG | 0.197326 | 4_1:-72535446 | None:intergenic |
| TTACTCTCTCCTTTGGTTGC+AGG | 0.224761 | 4_1:-72538255 | None:intergenic |
| TAATTTCTCAGCGAAGTTTC+GGG | 0.272563 | 4_1:-72535325 | None:intergenic |
| CAGCGAAGTTTCGGGTAGTT+TGG | 0.278679 | 4_1:-72535317 | None:intergenic |
| ATGTTGCTTGTCTTGACTTT+GGG | 0.296941 | 4_1:-72538280 | None:intergenic |
| CTTCGAGTTGCTCTTATTGT+TGG | 0.300516 | 4_1:-72538424 | None:intergenic |
| AGAGGGTGGAGAAGGGGACG+AGG | 0.311076 | 4_1:+72538563 | Msa0570380:CDS |
| GTAATTTCTCAGCGAAGTTT+CGG | 0.313368 | 4_1:-72535326 | None:intergenic |
| CATGTTGCTTGTCTTGACTT+TGG | 0.323819 | 4_1:-72538281 | None:intergenic |
| GGGTTTGAAGAACTGTAAAA+TGG | 0.324506 | 4_1:-72535470 | None:intergenic |
| CTTGTCCTTACTTACATCTT+CGG | 0.341835 | 4_1:+72535255 | Msa0570380:five_prime_UTR |
| TGTATTGTTGTGTTCAGATT+TGG | 0.353499 | 4_1:+72538700 | Msa0570380:three_prime_UTR |
| CTCCTGAAGGTGGTGCTGTT+GGG | 0.358191 | 4_1:+72538451 | Msa0570380:CDS |
| TCTGAAGATGGAGGTGGATA+TGG | 0.361041 | 4_1:+72538393 | Msa0570380:CDS |
| AGCGAAGTTTCGGGTAGTTT+GGG | 0.362092 | 4_1:-72535316 | None:intergenic |
| GCCCCAACAGCACCACCTTC+AGG | 0.372524 | 4_1:-72538453 | None:intergenic |
| CTGAACACAACAATACAAAT+AGG | 0.386655 | 4_1:-72538694 | None:intergenic |
| TATTGTCAAAGCCACGCTTT+TGG | 0.395450 | 4_1:+72536195 | Msa0570380:CDS |
| TTGTCCTTACTTACATCTTC+GGG | 0.402303 | 4_1:+72535256 | Msa0570380:five_prime_UTR |
| ATGGACGCCACGCTCCGTTT+TGG | 0.402730 | 4_1:+72536124 | Msa0570380:CDS |
| AGAAATTACGAACCAGTACC+TGG | 0.411802 | 4_1:+72535340 | Msa0570380:five_prime_UTR |
| GATGACGGAGATGGTGCATT+TGG | 0.422148 | 4_1:+72538348 | Msa0570380:CDS |
| TGTTTGTTTGTCGTACGAAA+TGG | 0.424889 | 4_1:+72536078 | Msa0570380:CDS |
| CCTCATCGTCGTCCTCGTCT+TGG | 0.426632 | 4_1:-72538518 | None:intergenic |
| GCTCCTGAAGGTGGTGCTGT+TGG | 0.427286 | 4_1:+72538450 | Msa0570380:CDS |
| AGTCTCTAGATCTTCCTTCC+TGG | 0.429424 | 4_1:+72535509 | Msa0570380:CDS |
| GGAGAAGGGGACGAGGAGGA+AGG | 0.449900 | 4_1:+72538570 | Msa0570380:CDS |
| TCCTGAAGGTGGTGCTGTTG+GGG | 0.459623 | 4_1:+72538452 | Msa0570380:CDS |
| GCTGTTGGGGCAGATGAAAA+TGG | 0.460797 | 4_1:+72538465 | Msa0570380:CDS |
| GGGTGGAGAAGGGGACGAGG+AGG | 0.469417 | 4_1:+72538566 | Msa0570380:CDS |
| GATGAGGAAGAGGGTGGAGA+AGG | 0.470567 | 4_1:+72538555 | Msa0570380:CDS |
| CTTTATAAGGAGGCCTATGT+AGG | 0.483502 | 4_1:+72538774 | Msa0570380:three_prime_UTR |
| GAGAGAAGAGACCCAGGTAC+TGG | 0.483911 | 4_1:-72535352 | None:intergenic |
| AGAAGACAATGAAGAGGAAG+AGG | 0.484704 | 4_1:+72538602 | Msa0570380:CDS |
| CTTGACTTTCCGGTGAAGAC+CGG | 0.487926 | 4_1:+72535177 | None:intergenic |
| CTTTGCAGCCACCAAAGAAA+AGG | 0.492171 | 4_1:+72538643 | Msa0570380:CDS |
| GACTGAGAAGCAAGATCTGA+GGG | 0.492606 | 4_1:-72535490 | None:intergenic |
| GTTCATTACCCGGTCTTCAC+CGG | 0.498994 | 4_1:-72535186 | None:intergenic |
| GGTTTGAAGAACTGTAAAAT+GGG | 0.502077 | 4_1:-72535469 | None:intergenic |
| ATGAGGAAGAGGGTGGAGAA+GGG | 0.503520 | 4_1:+72538556 | Msa0570380:CDS |
| AGACAATGAAGAGGAAGAGG+AGG | 0.514365 | 4_1:+72538605 | Msa0570380:CDS |
| GGATGACGACGATGAGGAAG+AGG | 0.520444 | 4_1:+72538545 | Msa0570380:CDS |
| GGAAGAGGAGGATGAAGATG+AGG | 0.522929 | 4_1:+72538617 | Msa0570380:CDS |
| CATGATGCTGAAGGAGAAGA+TGG | 0.525643 | 4_1:+72538300 | Msa0570380:CDS |
| GTTTCGGGTAGTTTGGGCAG+TGG | 0.527588 | 4_1:-72535310 | None:intergenic |
| CGAGGACGACGATGAGGATG+AGG | 0.532845 | 4_1:+72538524 | Msa0570380:CDS |
| AATTAAAACATGTCCTACAT+AGG | 0.536097 | 4_1:-72538787 | None:intergenic |
| GGAGATGGTGCATTTGGAGA+AGG | 0.537393 | 4_1:+72538354 | Msa0570380:CDS |
| CGTACGTTAACGCGCCAAAA+CGG | 0.542030 | 4_1:-72536138 | None:intergenic |
| TTGACTTTCCGGTGAAGACC+GGG | 0.543075 | 4_1:+72535178 | None:intergenic |
| TGAACAACAGAGTTCGATGA+TGG | 0.546158 | 4_1:+72536105 | Msa0570380:CDS |
| TCCTTTGGTTGCAGGCATGT+CGG | 0.547375 | 4_1:-72538247 | None:intergenic |
| GAGATGGTGCATTTGGAGAA+GGG | 0.548296 | 4_1:+72538355 | Msa0570380:CDS |
| AGACTGAGAAGCAAGATCTG+AGG | 0.550910 | 4_1:-72535491 | None:intergenic |
| GATGAGAGAGGTTACCAGGA+AGG | 0.553877 | 4_1:-72535523 | None:intergenic |
| GACAATAGCAGAAGCTAACA+TGG | 0.555250 | 4_1:-72536179 | None:intergenic |
| GATGAACTGTCATCTGAAGA+TGG | 0.555448 | 4_1:+72538381 | Msa0570380:CDS |
| GCTGCCCGAAGATGTAAGTA+AGG | 0.555785 | 4_1:-72535260 | None:intergenic |
| GGCAGATGAAAATGGAGAAG+AGG | 0.563741 | 4_1:+72538473 | Msa0570380:CDS |
| TGAGGAAGAGGGTGGAGAAG+GGG | 0.569418 | 4_1:+72538557 | Msa0570380:CDS |
| GAGAAAGAGAGAAGAGACCC+AGG | 0.569592 | 4_1:-72535358 | None:intergenic |
| CATGGTTACAAGAGCTTCCG+CGG | 0.570042 | 4_1:-72536161 | None:intergenic |
| TGATGAAGAAGACAATGAAG+AGG | 0.577160 | 4_1:+72538596 | Msa0570380:CDS |
| AACTCGAAGAAAGCTCCTGA+AGG | 0.583066 | 4_1:+72538438 | Msa0570380:CDS |
| ACCGACATGCCTGCAACCAA+AGG | 0.587965 | 4_1:+72538246 | Msa0570380:CDS |
| GAAGAAGATGATGACGGAGA+TGG | 0.589363 | 4_1:+72538339 | Msa0570380:CDS |
| TTTCTACGATCGCGATCCAA+CGG | 0.590594 | 4_1:+72535422 | Msa0570380:five_prime_UTR |
| GAAGAGGAAGATGATGAAGA+TGG | 0.599310 | 4_1:+72538489 | Msa0570380:CDS |
| AACACAACAATACAAATAGG+AGG | 0.599410 | 4_1:-72538691 | None:intergenic |
| ATGTAAGTAAGGACAAGTGT+GGG | 0.601552 | 4_1:-72535249 | None:intergenic |
| AGATGGTGCATTTGGAGAAG+GGG | 0.603872 | 4_1:+72538356 | Msa0570380:CDS |
| CTGTCATCTGAAGATGGAGG+TGG | 0.612113 | 4_1:+72538387 | Msa0570380:CDS |
| TCGAAGAAAGCTCCTGAAGG+TGG | 0.613002 | 4_1:+72538441 | Msa0570380:CDS |
| GACAAGCAACATGATGCTGA+AGG | 0.614183 | 4_1:+72538291 | Msa0570380:CDS |
| GTAGCATTCTAATTACGCAA+TGG | 0.625317 | 4_1:-72538824 | None:intergenic |
| GGATAGTCGAGTTTAAAACT+AGG | 0.635099 | 4_1:-72538894 | None:intergenic |
| CCAAGACGAGGACGACGATG+AGG | 0.639713 | 4_1:+72538518 | Msa0570380:CDS |
| GATGTAAGTAAGGACAAGTG+TGG | 0.640222 | 4_1:-72535250 | None:intergenic |
| TCGAAATATAGAAATATCAG+AGG | 0.642378 | 4_1:-72535390 | None:intergenic |
| TAACGCGCCAAAACGGAGCG+TGG | 0.645536 | 4_1:-72536131 | None:intergenic |
| GATGACGACGATGAGGAAGA+GGG | 0.652266 | 4_1:+72538546 | Msa0570380:CDS |
| TCGCGATCGTAGAAACGTTG+AGG | 0.655757 | 4_1:-72535414 | None:intergenic |
| GGATGAGGATGACGACGATG+AGG | 0.658041 | 4_1:+72538539 | Msa0570380:CDS |
| GAAGACGAAGAAGATGATGA+CGG | 0.666467 | 4_1:+72538333 | Msa0570380:CDS |
| GACGACGATGAGGAAGAGGG+TGG | 0.671206 | 4_1:+72538549 | Msa0570380:CDS |
| GAAATTACGAACCAGTACCT+GGG | 0.673866 | 4_1:+72535341 | Msa0570380:five_prime_UTR |
| ACTTACCGGAGCCAAAAGCG+TGG | 0.703445 | 4_1:-72536206 | None:intergenic |
| AGATGGTGATGACCAAGACG+AGG | 0.728787 | 4_1:+72538506 | Msa0570380:CDS |
| TGGCGCGTTAACGTACGCCG+CGG | 0.744220 | 4_1:+72536144 | Msa0570380:CDS |
| GAACTGTCATCTGAAGATGG+AGG | 0.798249 | 4_1:+72538384 | Msa0570380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTAAAATTATTTTT+TGG | + | chr4_1:72536980-72536999 | Msa0570380:intron | 0.0% |
| !! | GTAAAAAAAAAAAAAAAAAG+AGG | - | chr4_1:72536956-72536975 | None:intergenic | 10.0% |
| !! | AAACAAATATAGTATAATAT+TGG | + | chr4_1:72537221-72537240 | Msa0570380:intron | 10.0% |
| !!! | TACCAATATTTTTTTTTTTA+GGG | - | chr4_1:72537260-72537279 | None:intergenic | 10.0% |
| !!! | TTACCAATATTTTTTTTTTT+AGG | - | chr4_1:72537261-72537280 | None:intergenic | 10.0% |
| !! | CTAAAATTTAATTGAAATTT+AGG | - | chr4_1:72537466-72537485 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATCGTTATT+TGG | - | chr4_1:72537841-72537860 | None:intergenic | 10.0% |
| !!! | AATTTTGCTTTTTTTTTTAG+AGG | - | chr4_1:72535748-72535767 | None:intergenic | 15.0% |
| !! | TGTATAATTTATGTATTCTA+AGG | + | chr4_1:72535854-72535873 | Msa0570380:intron | 15.0% |
| !!! | CTTCAAAGTTTTATTTTTTT+TGG | + | chr4_1:72536411-72536430 | Msa0570380:intron | 15.0% |
| !!! | TATTTTTTTGTTTTTGGTTT+AGG | + | chr4_1:72536669-72536688 | Msa0570380:intron | 15.0% |
| !!! | ACTTTTTATAGAAATAGAAA+AGG | - | chr4_1:72536714-72536733 | None:intergenic | 15.0% |
| !! | TTCCCTAAAAAAAAAAATAT+TGG | + | chr4_1:72537255-72537274 | Msa0570380:intron | 15.0% |
| !!! | CCTTTTATTGTATAATAATA+CGG | + | chr4_1:72537347-72537366 | Msa0570380:intron | 15.0% |
| !!! | AGTTTTTTTTAAAGATAACA+TGG | + | chr4_1:72537573-72537592 | Msa0570380:intron | 15.0% |
| !!! | ATGTTTTTAACATAAAATAC+TGG | + | chr4_1:72537934-72537953 | Msa0570380:intron | 15.0% |
| !! | TTTCTGATAACATTATAAAA+TGG | + | chr4_1:72538196-72538215 | Msa0570380:intron | 15.0% |
| !! | TTCTGATAACATTATAAAAT+GGG | + | chr4_1:72538197-72538216 | Msa0570380:intron | 15.0% |
| !!! | GTGTTTTTATTTACTTTATA+AGG | + | chr4_1:72538761-72538780 | Msa0570380:three_prime_UTR | 15.0% |
| !!! | TTTTTATTTACTTTATAAGG+AGG | + | chr4_1:72538764-72538783 | Msa0570380:three_prime_UTR | 15.0% |
| !! | AAAGTGTAAAAATCGAATTA+CGG | - | chr4_1:72535286-72535305 | None:intergenic | 20.0% |
| !! | AAAAGTGAATTAAGAAGAAA+AGG | - | chr4_1:72535579-72535598 | None:intergenic | 20.0% |
| !!! | TTTATGTATTCTAAGGTTTA+TGG | + | chr4_1:72535861-72535880 | Msa0570380:intron | 20.0% |
| !! | ATAGTCTATAATCAATTATG+AGG | + | chr4_1:72536438-72536457 | Msa0570380:intron | 20.0% |
| !! | TAGTCTATAATCAATTATGA+GGG | + | chr4_1:72536439-72536458 | Msa0570380:intron | 20.0% |
| !!! | TATTGTTGATAAAAGACAAA+AGG | - | chr4_1:72536469-72536488 | None:intergenic | 20.0% |
| !! | GTAAAAAGAATAAAAGTGAA+AGG | - | chr4_1:72536739-72536758 | None:intergenic | 20.0% |
| !!! | AGTTGGAATCAAATAATTTT+TGG | - | chr4_1:72536914-72536933 | None:intergenic | 20.0% |
| !!! | ATTATTTTTTGGCACTATAT+AGG | + | chr4_1:72536991-72537010 | Msa0570380:intron | 20.0% |
| !! | CCGTATTATTATACAATAAA+AGG | - | chr4_1:72537350-72537369 | None:intergenic | 20.0% |
| !!! | AATAATACGGAGTATTTTTT+AGG | + | chr4_1:72537360-72537379 | Msa0570380:intron | 20.0% |
| !!! | ATAATACGGAGTATTTTTTA+GGG | + | chr4_1:72537361-72537380 | Msa0570380:intron | 20.0% |
| !!! | TATTTTTTAGGGGAATAATA+CGG | + | chr4_1:72537372-72537391 | Msa0570380:intron | 20.0% |
| !! | AATTTACATCACCATAATTA+TGG | + | chr4_1:72537433-72537452 | Msa0570380:intron | 20.0% |
| !! | ATTTACATCACCATAATTAT+GGG | + | chr4_1:72537434-72537453 | Msa0570380:intron | 20.0% |
| !! | TAATTGTTTGGCAAATTATT+AGG | + | chr4_1:72537672-72537691 | Msa0570380:intron | 20.0% |
| !! | AGAATTACAAAACAAATTAG+TGG | - | chr4_1:72537890-72537909 | None:intergenic | 20.0% |
| !! | AACATACTACATTAACTTTA+CGG | + | chr4_1:72538002-72538021 | Msa0570380:intron | 20.0% |
| !! | AATGAATTTTGTTCATTACC+CGG | - | chr4_1:72535199-72535218 | None:intergenic | 25.0% |
| !!! | TGGGTTTTGTTAATTTGATA+TGG | - | chr4_1:72535233-72535252 | None:intergenic | 25.0% |
| ! | AAGTGTAAAAATCGAATTAC+GGG | - | chr4_1:72535285-72535304 | None:intergenic | 25.0% |
| ! | TCGAAATATAGAAATATCAG+AGG | - | chr4_1:72535393-72535412 | None:intergenic | 25.0% |
| ! | ACGAAGAATTCAAACTAATT+AGG | - | chr4_1:72535798-72535817 | None:intergenic | 25.0% |
| ! | TTCAATCAAAAGATAGTACA+TGG | - | chr4_1:72536363-72536382 | None:intergenic | 25.0% |
| ! | AATTAGCATTAACAATGCTT+AGG | - | chr4_1:72536504-72536523 | None:intergenic | 25.0% |
| !! | ATAGAAGTGATGAATTTTAG+AGG | + | chr4_1:72536825-72536844 | Msa0570380:intron | 25.0% |
| !!! | ACTAGAATTGATTCCAATTT+TGG | + | chr4_1:72536884-72536903 | Msa0570380:intron | 25.0% |
| !!! | AATTTTTGGTACTCCAAAAT+TGG | - | chr4_1:72536900-72536919 | None:intergenic | 25.0% |
| ! | ATGATAACAAGTTAACAAGT+TGG | - | chr4_1:72536931-72536950 | None:intergenic | 25.0% |
| ! | TAATATGTTTAAGTGTGTGA+AGG | + | chr4_1:72537052-72537071 | Msa0570380:intron | 25.0% |
| ! | AAAGTAAAAGTGAAAAGAAG+CGG | + | chr4_1:72537077-72537096 | Msa0570380:intron | 25.0% |
| !!! | TAATACGGAGTATTTTTTAG+GGG | + | chr4_1:72537362-72537381 | Msa0570380:intron | 25.0% |
| ! | AACAAATTCATCATCAACAT+TGG | - | chr4_1:72537620-72537639 | None:intergenic | 25.0% |
| ! | TCTTCACGAAATTAATTGTT+TGG | + | chr4_1:72537660-72537679 | Msa0570380:intron | 25.0% |
| !!! | TTGTTTTGTAATTCTTGAGT+TGG | + | chr4_1:72537895-72537914 | Msa0570380:intron | 25.0% |
| !! | TTCTTTAGAAATATTCTTCG+AGG | + | chr4_1:72538040-72538059 | Msa0570380:intron | 25.0% |
| !! | TCTTTAGAAATATTCTTCGA+GGG | + | chr4_1:72538041-72538060 | Msa0570380:intron | 25.0% |
| ! | TTTAAGTGAAACAAACAAAG+CGG | - | chr4_1:72538131-72538150 | None:intergenic | 25.0% |
| ! | TAACATTATAAAATGGGTGT+AGG | + | chr4_1:72538203-72538222 | Msa0570380:intron | 25.0% |
| !! | TTAGTACTGAAAAAACAACA+TGG | - | chr4_1:72538735-72538754 | None:intergenic | 25.0% |
| ! | AATTAAAACATGTCCTACAT+AGG | - | chr4_1:72538790-72538809 | None:intergenic | 25.0% |
| !! | ATTAGAATGCTACATTTTAC+TGG | + | chr4_1:72538834-72538853 | Msa0570380:three_prime_UTR | 25.0% |
| !! | TTAGAATGCTACATTTTACT+GGG | + | chr4_1:72538835-72538854 | Msa0570380:three_prime_UTR | 25.0% |
| ! | AGAAGAAGCTTCATACATTT+TGG | - | chr4_1:72535449-72535468 | None:intergenic | 30.0% |
| GGTTTGAAGAACTGTAAAAT+GGG | - | chr4_1:72535472-72535491 | None:intergenic | 30.0% | |
| AAGTGTTTGAGCAAAAAAGA+GGG | - | chr4_1:72535665-72535684 | None:intergenic | 30.0% | |
| ! | ACAGGATAATATTCGTTTTG+TGG | + | chr4_1:72536041-72536060 | Msa0570380:intron | 30.0% |
| !! | ACGAAGAAAAAAGTACTTAC+CGG | - | chr4_1:72536223-72536242 | None:intergenic | 30.0% |
| GATAAGATTAGATCTAGTCA+AGG | - | chr4_1:72536334-72536353 | None:intergenic | 30.0% | |
| !!! | ATTTTTAGGGTAAAGGGATA+TGG | + | chr4_1:72536566-72536585 | Msa0570380:intron | 30.0% |
| GCAAAATAGTAATTAGACAG+AGG | - | chr4_1:72536616-72536635 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGCACTATATAGGA+CGG | + | chr4_1:72536995-72537014 | Msa0570380:intron | 30.0% |
| ! | ATTCACTTCTTCCTTTTCTT+TGG | - | chr4_1:72538657-72538676 | None:intergenic | 30.0% |
| AACACAACAATACAAATAGG+AGG | - | chr4_1:72538694-72538713 | None:intergenic | 30.0% | |
| CTGAACACAACAATACAAAT+AGG | - | chr4_1:72538697-72538716 | None:intergenic | 30.0% | |
| TGTATTGTTGTGTTCAGATT+TGG | + | chr4_1:72538700-72538719 | Msa0570380:three_prime_UTR | 30.0% | |
| ATGTAAGTAAGGACAAGTGT+GGG | - | chr4_1:72535252-72535271 | None:intergenic | 35.0% | |
| CTTGTCCTTACTTACATCTT+CGG | + | chr4_1:72535255-72535274 | Msa0570380:five_prime_UTR | 35.0% | |
| TTGTCCTTACTTACATCTTC+GGG | + | chr4_1:72535256-72535275 | Msa0570380:five_prime_UTR | 35.0% | |
| TAATTTCTCAGCGAAGTTTC+GGG | - | chr4_1:72535328-72535347 | None:intergenic | 35.0% | |
| GTAATTTCTCAGCGAAGTTT+CGG | - | chr4_1:72535329-72535348 | None:intergenic | 35.0% | |
| GGGTTTGAAGAACTGTAAAA+TGG | - | chr4_1:72535473-72535492 | None:intergenic | 35.0% | |
| AGTGTTTGAGCAAAAAAGAG+GGG | - | chr4_1:72535664-72535683 | None:intergenic | 35.0% | |
| ! | GAAGTGTTTGAGCAAAAAAG+AGG | - | chr4_1:72535666-72535685 | None:intergenic | 35.0% |
| GCTAAACAACTCACAAAAAG+TGG | - | chr4_1:72535688-72535707 | None:intergenic | 35.0% | |
| !! | TTCTGAGATGATCTAACGAA+CGG | + | chr4_1:72535973-72535992 | Msa0570380:intron | 35.0% |
| ! | ATTCGTTTTGTGGTTTGAGA+AGG | + | chr4_1:72536051-72536070 | Msa0570380:CDS | 35.0% |
| ! | TTCGTTTTGTGGTTTGAGAA+GGG | + | chr4_1:72536052-72536071 | Msa0570380:CDS | 35.0% |
| TGTTTGTTTGTCGTACGAAA+TGG | + | chr4_1:72536078-72536097 | Msa0570380:CDS | 35.0% | |
| !!! | TGTGCGATTTTTAGGGTAAA+GGG | + | chr4_1:72536560-72536579 | Msa0570380:intron | 35.0% |
| TATAGGACGGAACATAGTAA+AGG | + | chr4_1:72537008-72537027 | Msa0570380:intron | 35.0% | |
| TAGGAACAAGCCCATAATTA+TGG | - | chr4_1:72537447-72537466 | None:intergenic | 35.0% | |
| CAAAGCGGATAATAATACAG+AGG | - | chr4_1:72538116-72538135 | None:intergenic | 35.0% | |
| ! | ATGTTGCTTGTCTTGACTTT+GGG | - | chr4_1:72538283-72538302 | None:intergenic | 35.0% |
| TGATGAAGAAGACAATGAAG+AGG | + | chr4_1:72538596-72538615 | Msa0570380:CDS | 35.0% | |
| GTAGCATTCTAATTACGCAA+TGG | - | chr4_1:72538827-72538846 | None:intergenic | 35.0% | |
| ! | GGATAGTCGAGTTTAAAACT+AGG | - | chr4_1:72538897-72538916 | None:intergenic | 35.0% |
| GATGTAAGTAAGGACAAGTG+TGG | - | chr4_1:72535253-72535272 | None:intergenic | 40.0% | |
| AGAAATTACGAACCAGTACC+TGG | + | chr4_1:72535340-72535359 | Msa0570380:five_prime_UTR | 40.0% | |
| GAAATTACGAACCAGTACCT+GGG | + | chr4_1:72535341-72535360 | Msa0570380:five_prime_UTR | 40.0% | |
| ! | CTTCATACATTTTGGACCGT+TGG | - | chr4_1:72535441-72535460 | None:intergenic | 40.0% |
| GAAGAGAAGAAAGATGAGAG+AGG | - | chr4_1:72535538-72535557 | None:intergenic | 40.0% | |
| ATCATCTCAGAAATCACGAC+AGG | - | chr4_1:72535965-72535984 | None:intergenic | 40.0% | |
| TGAACAACAGAGTTCGATGA+TGG | + | chr4_1:72536105-72536124 | Msa0570380:CDS | 40.0% | |
| GACAATAGCAGAAGCTAACA+TGG | - | chr4_1:72536182-72536201 | None:intergenic | 40.0% | |
| ! | TATTGTCAAAGCCACGCTTT+TGG | + | chr4_1:72536195-72536214 | Msa0570380:CDS | 40.0% |
| TTCACGAGTTATAGGCCATA+TGG | + | chr4_1:72536532-72536551 | Msa0570380:intron | 40.0% | |
| CTTTACCCTAAAAATCGCAC+AGG | - | chr4_1:72536561-72536580 | None:intergenic | 40.0% | |
| !!! | CTGTGCGATTTTTAGGGTAA+AGG | + | chr4_1:72536559-72536578 | Msa0570380:intron | 40.0% |
| ! | GGAACATAGTAAAGGTGTGT+TGG | + | chr4_1:72537016-72537035 | Msa0570380:intron | 40.0% |
| ! | AAGCGGATTCGTGGATTATT+CGG | + | chr4_1:72537094-72537113 | Msa0570380:intron | 40.0% |
| ! | GATTCGTGGATTATTCGGTT+TGG | + | chr4_1:72537099-72537118 | Msa0570380:intron | 40.0% |
| ATCAAAACGACATGCGTTAG+AGG | - | chr4_1:72537151-72537170 | None:intergenic | 40.0% | |
| !!! | TCTAACGCATGTCGTTTTGA+TGG | + | chr4_1:72537150-72537169 | Msa0570380:intron | 40.0% |
| !!! | CTAACGCATGTCGTTTTGAT+GGG | + | chr4_1:72537151-72537170 | Msa0570380:intron | 40.0% |
| !!! | TAACGCATGTCGTTTTGATG+GGG | + | chr4_1:72537152-72537171 | Msa0570380:intron | 40.0% |
| ! | TTGGGTTTTACTCTCTCCTT+TGG | - | chr4_1:72538265-72538284 | None:intergenic | 40.0% |
| ! | CATGTTGCTTGTCTTGACTT+TGG | - | chr4_1:72538284-72538303 | None:intergenic | 40.0% |
| GAAGACGAAGAAGATGATGA+CGG | + | chr4_1:72538333-72538352 | Msa0570380:CDS | 40.0% | |
| GATGAACTGTCATCTGAAGA+TGG | + | chr4_1:72538381-72538400 | Msa0570380:CDS | 40.0% | |
| !! | CTTCGAGTTGCTCTTATTGT+TGG | - | chr4_1:72538427-72538446 | None:intergenic | 40.0% |
| GAAGAGGAAGATGATGAAGA+TGG | + | chr4_1:72538489-72538508 | Msa0570380:CDS | 40.0% | |
| AGAAGACAATGAAGAGGAAG+AGG | + | chr4_1:72538602-72538621 | Msa0570380:CDS | 40.0% | |
| ! | CACTTCTTCCTTTTCTTTGG+TGG | - | chr4_1:72538654-72538673 | None:intergenic | 40.0% |
| CTTTATAAGGAGGCCTATGT+AGG | + | chr4_1:72538774-72538793 | Msa0570380:three_prime_UTR | 40.0% | |
| ! | AGCGAAGTTTCGGGTAGTTT+GGG | - | chr4_1:72535319-72535338 | None:intergenic | 45.0% |
| TTTCTACGATCGCGATCCAA+CGG | + | chr4_1:72535422-72535441 | Msa0570380:five_prime_UTR | 45.0% | |
| GACTGAGAAGCAAGATCTGA+GGG | - | chr4_1:72535493-72535512 | None:intergenic | 45.0% | |
| AGACTGAGAAGCAAGATCTG+AGG | - | chr4_1:72535494-72535513 | None:intergenic | 45.0% | |
| AGTCTCTAGATCTTCCTTCC+TGG | + | chr4_1:72535509-72535528 | Msa0570380:CDS | 45.0% | |
| GAAAGATGAGAGAGGTTACC+AGG | - | chr4_1:72535530-72535549 | None:intergenic | 45.0% | |
| GATGATCTAACGAACGGTGA+TGG | + | chr4_1:72535979-72535998 | Msa0570380:intron | 45.0% | |
| TGCGCATGTTCACGAGTTAT+AGG | + | chr4_1:72536524-72536543 | Msa0570380:intron | 45.0% | |
| ACGAGTTATAGGCCATATGG+TGG | + | chr4_1:72536535-72536554 | Msa0570380:intron | 45.0% | |
| GGGATATGGTATGACTGAGA+AGG | + | chr4_1:72536580-72536599 | Msa0570380:intron | 45.0% | |
| ! | AGTGAAAAGAAGCGGATTCG+TGG | + | chr4_1:72537085-72537104 | Msa0570380:intron | 45.0% |
| GGCACACTATTAAGCGATGT+CGG | + | chr4_1:72537183-72537202 | Msa0570380:intron | 45.0% | |
| TTACTCTCTCCTTTGGTTGC+AGG | - | chr4_1:72538258-72538277 | None:intergenic | 45.0% | |
| GACAAGCAACATGATGCTGA+AGG | + | chr4_1:72538291-72538310 | Msa0570380:CDS | 45.0% | |
| CATGATGCTGAAGGAGAAGA+TGG | + | chr4_1:72538300-72538319 | Msa0570380:CDS | 45.0% | |
| !! | GAAGAAGATGATGACGGAGA+TGG | + | chr4_1:72538339-72538358 | Msa0570380:CDS | 45.0% |
| GAGATGGTGCATTTGGAGAA+GGG | + | chr4_1:72538355-72538374 | Msa0570380:CDS | 45.0% | |
| AGATGGTGCATTTGGAGAAG+GGG | + | chr4_1:72538356-72538375 | Msa0570380:CDS | 45.0% | |
| GAACTGTCATCTGAAGATGG+AGG | + | chr4_1:72538384-72538403 | Msa0570380:CDS | 45.0% | |
| TCTGAAGATGGAGGTGGATA+TGG | + | chr4_1:72538393-72538412 | Msa0570380:CDS | 45.0% | |
| AACTCGAAGAAAGCTCCTGA+AGG | + | chr4_1:72538438-72538457 | Msa0570380:CDS | 45.0% | |
| GGCAGATGAAAATGGAGAAG+AGG | + | chr4_1:72538473-72538492 | Msa0570380:CDS | 45.0% | |
| AGACAATGAAGAGGAAGAGG+AGG | + | chr4_1:72538605-72538624 | Msa0570380:CDS | 45.0% | |
| CTTTGCAGCCACCAAAGAAA+AGG | + | chr4_1:72538643-72538662 | Msa0570380:CDS | 45.0% | |
| !! | TAAAAAAATAAAGTAATAAT+TGG | + | chr4_1:72535911-72535930 | Msa0570380:intron | 5.0% |
| !! | ATTATTAATTAATTATTTAC+AGG | + | chr4_1:72536023-72536042 | Msa0570380:intron | 5.0% |
| !!! | TTTTTTTATTTTTTTGTTTT+TGG | + | chr4_1:72536663-72536682 | Msa0570380:intron | 5.0% |
| !!! | TATTTTTTTAACTTTTTTTT+TGG | - | chr4_1:72537301-72537320 | None:intergenic | 5.0% |
| !! | ATTATAATATACAAATTATT+AGG | - | chr4_1:72537416-72537435 | None:intergenic | 5.0% |
| GCTGCCCGAAGATGTAAGTA+AGG | - | chr4_1:72535263-72535282 | None:intergenic | 50.0% | |
| ! | CAGCGAAGTTTCGGGTAGTT+TGG | - | chr4_1:72535320-72535339 | None:intergenic | 50.0% |
| GAGAAAGAGAGAAGAGACCC+AGG | - | chr4_1:72535361-72535380 | None:intergenic | 50.0% | |
| TCGCGATCGTAGAAACGTTG+AGG | - | chr4_1:72535417-72535436 | None:intergenic | 50.0% | |
| GATGAGAGAGGTTACCAGGA+AGG | - | chr4_1:72535526-72535545 | None:intergenic | 50.0% | |
| CGTACGTTAACGCGCCAAAA+CGG | - | chr4_1:72536141-72536160 | None:intergenic | 50.0% | |
| CATGGTTACAAGAGCTTCCG+CGG | - | chr4_1:72536164-72536183 | None:intergenic | 50.0% | |
| AAATCGCACAGGCCACCATA+TGG | - | chr4_1:72536550-72536569 | None:intergenic | 50.0% | |
| ! | TGGTGGCCTGTGCGATTTTT+AGG | + | chr4_1:72536552-72536571 | Msa0570380:intron | 50.0% |
| ! | GGTGGCCTGTGCGATTTTTA+GGG | + | chr4_1:72536553-72536572 | Msa0570380:intron | 50.0% |
| GGTACGTGCTTTACGCTCAA+TGG | - | chr4_1:72537130-72537149 | None:intergenic | 50.0% | |
| !!! | GCATGTCGTTTTGATGGGGT+GGG | + | chr4_1:72537156-72537175 | Msa0570380:intron | 50.0% |
| !!! | CATGTCGTTTTGATGGGGTG+GGG | + | chr4_1:72537157-72537176 | Msa0570380:intron | 50.0% |
| TCCTTTGGTTGCAGGCATGT+CGG | - | chr4_1:72538250-72538269 | None:intergenic | 50.0% | |
| !! | GATGACGGAGATGGTGCATT+TGG | + | chr4_1:72538348-72538367 | Msa0570380:CDS | 50.0% |
| GGAGATGGTGCATTTGGAGA+AGG | + | chr4_1:72538354-72538373 | Msa0570380:CDS | 50.0% | |
| CTGTCATCTGAAGATGGAGG+TGG | + | chr4_1:72538387-72538406 | Msa0570380:CDS | 50.0% | |
| TCGAAGAAAGCTCCTGAAGG+TGG | + | chr4_1:72538441-72538460 | Msa0570380:CDS | 50.0% | |
| GCTGTTGGGGCAGATGAAAA+TGG | + | chr4_1:72538465-72538484 | Msa0570380:CDS | 50.0% | |
| ! | AGATGGTGATGACCAAGACG+AGG | + | chr4_1:72538506-72538525 | Msa0570380:CDS | 50.0% |
| GATGACGACGATGAGGAAGA+GGG | + | chr4_1:72538546-72538565 | Msa0570380:CDS | 50.0% | |
| ATGAGGAAGAGGGTGGAGAA+GGG | + | chr4_1:72538556-72538575 | Msa0570380:CDS | 50.0% | |
| GGAAGAGGAGGATGAAGATG+AGG | + | chr4_1:72538617-72538636 | Msa0570380:CDS | 50.0% | |
| ! | GTTTCGGGTAGTTTGGGCAG+TGG | - | chr4_1:72535313-72535332 | None:intergenic | 55.0% |
| GAGAGAAGAGACCCAGGTAC+TGG | - | chr4_1:72535355-72535374 | None:intergenic | 55.0% | |
| !!! | CAAAGCCACGCTTTTGGCTC+CGG | + | chr4_1:72536201-72536220 | Msa0570380:CDS | 55.0% |
| ACTTACCGGAGCCAAAAGCG+TGG | - | chr4_1:72536209-72536228 | None:intergenic | 55.0% | |
| !!! | CGCATGTCGTTTTGATGGGG+TGG | + | chr4_1:72537155-72537174 | Msa0570380:intron | 55.0% |
| !! | TCGTTTTGATGGGGTGGGGT+GGG | + | chr4_1:72537161-72537180 | Msa0570380:intron | 55.0% |
| ACCGACATGCCTGCAACCAA+AGG | + | chr4_1:72538246-72538265 | Msa0570380:CDS | 55.0% | |
| !! | CTCCTGAAGGTGGTGCTGTT+GGG | + | chr4_1:72538451-72538470 | Msa0570380:CDS | 55.0% |
| !! | TCCTGAAGGTGGTGCTGTTG+GGG | + | chr4_1:72538452-72538471 | Msa0570380:CDS | 55.0% |
| GGATGAGGATGACGACGATG+AGG | + | chr4_1:72538539-72538558 | Msa0570380:CDS | 55.0% | |
| GGATGACGACGATGAGGAAG+AGG | + | chr4_1:72538545-72538564 | Msa0570380:CDS | 55.0% | |
| GATGAGGAAGAGGGTGGAGA+AGG | + | chr4_1:72538555-72538574 | Msa0570380:CDS | 55.0% | |
| TGAGGAAGAGGGTGGAGAAG+GGG | + | chr4_1:72538557-72538576 | Msa0570380:CDS | 55.0% | |
| ! | ATGGACGCCACGCTCCGTTT+TGG | + | chr4_1:72536124-72536143 | Msa0570380:CDS | 60.0% |
| TAACGCGCCAAAACGGAGCG+TGG | - | chr4_1:72536134-72536153 | None:intergenic | 60.0% | |
| !! | GTCGTTTTGATGGGGTGGGG+TGG | + | chr4_1:72537160-72537179 | Msa0570380:intron | 60.0% |
| !! | CGTTTTGATGGGGTGGGGTG+GGG | + | chr4_1:72537162-72537181 | Msa0570380:intron | 60.0% |
| !! | GCTCCTGAAGGTGGTGCTGT+TGG | + | chr4_1:72538450-72538469 | Msa0570380:CDS | 60.0% |
| CCTCATCGTCGTCCTCGTCT+TGG | - | chr4_1:72538521-72538540 | None:intergenic | 60.0% | |
| CCAAGACGAGGACGACGATG+AGG | + | chr4_1:72538518-72538537 | Msa0570380:CDS | 60.0% | |
| CGAGGACGACGATGAGGATG+AGG | + | chr4_1:72538524-72538543 | Msa0570380:CDS | 60.0% | |
| GACGACGATGAGGAAGAGGG+TGG | + | chr4_1:72538549-72538568 | Msa0570380:CDS | 60.0% | |
| TGGCGCGTTAACGTACGCCG+CGG | + | chr4_1:72536144-72536163 | Msa0570380:CDS | 65.0% | |
| GCCCCAACAGCACCACCTTC+AGG | - | chr4_1:72538456-72538475 | None:intergenic | 65.0% | |
| AGAGGGTGGAGAAGGGGACG+AGG | + | chr4_1:72538563-72538582 | Msa0570380:CDS | 65.0% | |
| GGAGAAGGGGACGAGGAGGA+AGG | + | chr4_1:72538570-72538589 | Msa0570380:CDS | 65.0% | |
| GGGTGGAGAAGGGGACGAGG+AGG | + | chr4_1:72538566-72538585 | Msa0570380:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 72535189 | 72538919 | 72535189 | ID=Msa0570380;Name=Msa0570380 |
| chr4_1 | mRNA | 72535189 | 72538919 | 72535189 | ID=Msa0570380-mRNA-1;Parent=Msa0570380;Name=Msa0570380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=262|1|1|1|1|1|3|245|235 |
| chr4_1 | exon | 72535189 | 72535530 | 72535189 | ID=Msa0570380-mRNA-1:exon:24790;Parent=Msa0570380-mRNA-1 |
| chr4_1 | exon | 72536045 | 72536222 | 72536045 | ID=Msa0570380-mRNA-1:exon:24791;Parent=Msa0570380-mRNA-1 |
| chr4_1 | exon | 72538225 | 72538919 | 72538225 | ID=Msa0570380-mRNA-1:exon:24792;Parent=Msa0570380-mRNA-1 |
| chr4_1 | five_prime_UTR | 72535189 | 72535450 | 72535189 | ID=Msa0570380-mRNA-1:five_prime_utr;Parent=Msa0570380-mRNA-1 |
| chr4_1 | CDS | 72535451 | 72535530 | 72535451 | ID=Msa0570380-mRNA-1:cds;Parent=Msa0570380-mRNA-1 |
| chr4_1 | CDS | 72536045 | 72536222 | 72536045 | ID=Msa0570380-mRNA-1:cds;Parent=Msa0570380-mRNA-1 |
| chr4_1 | CDS | 72538225 | 72538674 | 72538225 | ID=Msa0570380-mRNA-1:cds;Parent=Msa0570380-mRNA-1 |
| chr4_1 | three_prime_UTR | 72538675 | 72538919 | 72538675 | ID=Msa0570380-mRNA-1:three_prime_utr;Parent=Msa0570380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
