AlfalfaGEDB | Msa0506860

M. sativa cultivar zhongmu-4 / Msa0506860

KEGG: K13457
GO: GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363
PFAM: PF18052.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506860	XP_013458932.2	95.021	944	46	1	1	943	1	944	0.0	1813

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506860	sp\|Q39214\|RPM1_ARATH	32.484	942	582	23	1	920	1	910	1.46e-147	464

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506860	A0A072UT37	95.021	944	46	1	1	943	48	991	0.0	1812

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001380	Msa0506860	0.811018	8.635414e-51	-8.615850e-47
Msa0003930	Msa0506860	0.802882	4.542356e-49	-8.615850e-47
Msa0007990	Msa0506860	0.828793	7.377513e-55	-8.615850e-47
Msa0012710	Msa0506860	0.828019	1.134457e-54	-8.615850e-47
Msa0023330	Msa0506860	0.803922	2.766317e-49	-8.615850e-47
Msa0030160	Msa0506860	0.833773	4.397584e-56	-8.615850e-47
Msa0031180	Msa0506860	0.813982	1.942411e-51	-8.615850e-47
Msa0042550	Msa0506860	0.830764	2.443948e-55	-8.615850e-47
Msa0043500	Msa0506860	0.834410	3.046575e-56	-8.615850e-47
Msa0043650	Msa0506860	0.823927	1.064289e-53	-8.615850e-47

Showing 1 to 10 of 455 entries

Previous1 2 3 4 5…46Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0506860	MtrunA17_Chr3g0081341	95.021	944	46	1	1	943	66	1009	1811
Msa0506860	MtrunA17_Chr3g0081391	77.378	946	210	3	1	943	1	945	1481
Msa0506860	MtrunA17_Chr3g0081371	75.941	956	212	6	1	943	1	951	1404
Msa0506860	MtrunA17_Chr3g0081361	72.670	955	238	6	1	943	1	944	1375
Msa0506860	MtrunA17_Chr3g0081191	72.304	946	254	4	1	943	1	941	1369
Msa0506860	MtrunA17_Chr3g0081211	71.005	945	271	3	1	943	1	944	1303
Msa0506860	MtrunA17_Chr3g0081181	65.254	944	312	6	1	943	1	929	1162
Msa0506860	MtrunA17_Chr3g0080741	56.402	945	400	5	1	937	1	941	1072
Msa0506860	MtrunA17_Chr3g0094301	57.309	944	391	5	1	937	1	939	1063
Msa0506860	MtrunA17_Chr7g0229761	57.309	944	391	5	1	937	1	939	1063

Showing 1 to 10 of 461 entries

Previous1 2 3 4 5…47Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506860	AT3G07040.1	32.484	942	582	23	1	920	1	910	1.48e-148	464
Msa0506860	AT5G48620.6	29.885	957	579	29	1	920	1	902	5.58e-100	334
Msa0506860	AT5G48620.1	29.885	957	579	29	1	920	1	902	5.58e-100	334
Msa0506860	AT5G48620.4	29.885	957	579	29	1	920	1	902	5.58e-100	334
Msa0506860	AT5G48620.2	29.885	957	579	29	1	920	1	902	5.58e-100	334
Msa0506860	AT5G48620.3	29.885	957	579	29	1	920	1	902	5.58e-100	334
Msa0506860	AT5G48620.5	29.885	957	579	29	1	920	1	902	5.58e-100	334
Msa0506860	AT5G43470.3	30.032	949	588	28	1	920	1	902	1.79e-99	333
Msa0506860	AT5G43470.2	30.032	949	588	28	1	920	1	902	1.79e-99	333
Msa0506860	AT5G43470.4	30.032	949	588	28	1	920	1	902	1.79e-99	333

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

Find 175 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTCCCAAGTTATC+AGG	0.334232	3_4:-53568655	None:intergenic
AAAATGTGGAGGGCTACCAC+TGG	0.578193	3_4:+53567976	Msa0506860:CDS
AAACAACTCCCTCATAGTGT+AGG	0.631090	3_4:-53567561	None:intergenic
AAACATCATCAAATAAAACC+AGG	0.694294	3_4:-53567703	None:intergenic
AAAGCGTCTAGTTATTCCAA+TGG	0.618510	3_4:-53568461	None:intergenic
AAAGCTGCTGATGATGATGA+AGG	0.624820	3_4:+53567005	Msa0506860:CDS
AAATCATGCATGCTATATTT+TGG	0.190745	3_4:+53568160	Msa0506860:CDS
AAATTCAGTCTCAACAAACT+AGG	0.592237	3_4:-53569285	None:intergenic
AAATTCTTCAAAGAGTCTAG+TGG	0.622785	3_4:-53569261	None:intergenic
AAGAATGATCCTATTCCAAA+GGG	0.555312	3_4:+53567614	Msa0506860:CDS

Showing 1 to 10 of 175 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTAGTTGAAGAAAGAACTT+TGG	+	chr3_4:53566902-53566921	Msa0506860:CDS	30.0%
CTTGAATTTCAGAAGCAATT+TGG	-	chr3_4:53567208-53567227	None:intergenic	30.0%
AATGATAAAGAAGTTGTGCA+AGG	+	chr3_4:53567589-53567608	Msa0506860:CDS	30.0%
AAGAATGATCCTATTCCAAA+GGG	+	chr3_4:53567614-53567633	Msa0506860:CDS	30.0%
GAAATTGTTCAAAAATGTGG+AGG	+	chr3_4:53567965-53567984	Msa0506860:CDS	30.0%
ATGCATGATTTCAAATGGTA+AGG	-	chr3_4:53568151-53568170	None:intergenic	30.0%
ATAGCATGCATGATTTCAAA+TGG	-	chr3_4:53568156-53568175	None:intergenic	30.0%
TTCTTTGAATTAACTCTGTC+AGG	-	chr3_4:53568300-53568319	None:intergenic	30.0%
CATCATCTTCATGCATTAAA+TGG	-	chr3_4:53568432-53568451	None:intergenic	30.0%
GAATTCTATACCTGATAACT+TGG	+	chr3_4:53568645-53568664	Msa0506860:CDS	30.0%

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	53566858	53569689	53566858	ID=Msa0506860;Name=Msa0506860
chr3_4	mRNA	53566858	53569689	53566858	ID=Msa0506860-mRNA-1;Parent=Msa0506860;Name=Msa0506860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|943
chr3_4	exon	53566858	53569689	53566858	ID=Msa0506860-mRNA-1:exon:11892;Parent=Msa0506860-mRNA-1
chr3_4	CDS	53566858	53569689	53566858	ID=Msa0506860-mRNA-1:cds;Parent=Msa0506860-mRNA-1

Gene Sequence

>Msa0506860

ATGGCAGAAACTGCAGTGTCATTTGCTGTGCAGCTCTGCCAATTTGTAGTTGAAGAAAGAACTTTGGTGACAGGTGTTGAGAGTGACTTCAATGATATCAAAGATGACCTTGAGTTCATCCAAGCATTCCTCAAGGATGCTGACAGAAAAGCTGCTGATGATGATGAAGGAGGAGGAGCCAATGATGGAGTCAAAACATGGGTGAAGCAGGTAAGAGAAGTATCTTTTCGCATAGAAGATGTAATTGACGAGTATATCATGTGCGAGGCGCAAAGGATGAACCATTCTATATTCACAGCAGCACTACAAATGTTTCCTGGTTTGCTCAGAATCATGAATCCACACCACCAAATTGCTTCTGAAATTCAAGACATCAAGTCAACACTTGGTAAAATCAAAGAAAGAAGAACAAGATTTCCATTTCAGTCTGATAGTGAATCAGGAAGCTATAGAGGGTCCAAAGCTCCTAGAATTGGCGACCCTCGAATGGCTCCCTATTTCATTGAAGAGACCCAAGTTGTAGGGTTTGAGTCACCAGCAAATGAACTGGTTGGTCGTTTGCTGGGTGGAGACAATCAGCGTACGTTGGTTTCTGTGGTAGGCATGGGAGGACTCGGAAAAACAACTCTTGCTAAGCATGTTTTTGATAACGATTTGGTGAAAAGCCACTTTGATTGCCGCTCTTTCATAACAGTTTCTCAATCCTACACTATGAGGGAGTTGTTTACAGAAATGATAAAGAAGTTGTGCAAGGACAAGAATGATCCTATTCCAAAGGGTCTGCAAAAGATGGATGACAAAACATTGATCATTCAAGTCAACCAATACCTTGAGTCAAAGAGGTACCTGGTTTTATTTGATGATGTTTGGAAAGAAAATTTTTCTGATGAGATTGATCTTGCTTTAATTAGAAATAACAAAGGAAGTAGAATCATTGTGACCACTAGAAATATGAAAGTAGCAGAATATTTTAAGAAAGATTTTCCTGTTCATATTCATGAGCTACAACCTTTGTCTTCAGAGAAAGCATGGGAACTGTTTTGTAATAAGGCATTTATATTTGAGCTAGGAAAACAGTGTCCAACAGACCTTGAGGACATGTCCAATGAAATTGTTCAAAAATGTGGAGGGCTACCACTGGCTATTGTCGCCATTGGTGGCCTTTTGTCAACAAAGCCTAAAACCATTTTTGAGTGGGAAAAGGTGAGTAGAAATCTGAGAATGGAGTTAGAGCGCAATGTGCACTTGACTAGTCTAATAAGAATTTTATCTCTTAGTTATGATGATTTGCCTTACCATTTGAAATCATGCATGCTATATTTTGGTATATATCCTGAGGACTACTCCATCAATCGGAAGAGACTTACTCGGCAATGGATGGCAGAAGGGTTTGTTAAGAATGGGGAGACAAGACCATTGGAGGAAGTTGCTGAAGAGTACCTGACAGAGTTAATTCAAAGAAGTTTGGTTAATGCTTCTGTACTTGGCTTTGATGGGAAAGTCCGAAGTTGTCAAGTCCATGATGTGTTGCGTGAAGTGATCATTAAAAAAATGAAAGATCAAAGTTTCTGCCATTTAATGCATGAAGATGATGAACAACTCACCATTGGAATAACTAGACGCTTTTCTATAGCAGCTCTCTCCAACAACGACTTGAGAAACACAAGCAACTCAGGAATTCGTGCGGTATTTGTCTTTGACAAAGGTGAGTTGTCTAAACAGTTCATGGATGTATTATCTGTCAAGTTTAAGCTGTTAAAAGTGCTTGATTTTGAGAAGTCTTCGTTGAATTCTATACCTGATAACTTGGGAAATCTTTTCCACCTAAGGTACTTGAACTTGAGTCATACCAAAGTTACGGTTCTTCCAAGATCCATTGGCAATCTAATTAACTTAGAAACCTTGGATCTAAGGCAAACTCAAGTGCATGAATTACCGAAAGAGATAAACAAGCTCACAAAGCTAAGGCTTCTTCCAGCTTATTACAGAAAATACGAAGGGCAATACTCTATGTTGAACTTTACAATAGGAGTGAAAATGCACGAAGGTATTGGATGCTTGAAATCTTTACAAAAGCTTTACTTCTTGGAAGCAAATCATGGTGGAATAAAGCTTATCCAAGAGCTCAAAATGCTGAAACAGTTGAGGAAGTTAGGCATAAAGTCCGTGCGGCAAGAATATGGAAATGCATTATCTGCTGCAATACAAGAGATGAAACAACTTGAATCTCTTAATATTGGTGCTATAACTAAGGATGAAATCCTTGACTTGGATCTTGCATCAGCTCCATCTCGTCTTAGAGTGCTCAATTTGAAATGTAGACTAACCAAGTTGCCCAATTGGATTCCAAATCTCAAGTCTCTTGTGAAGCTAAGACTTGGTTTATCGAACTTCGAAGATGATCCACTAGACTCTTTGAAGAATTTACCTAGTTTGTTGAGACTGAATTTGTGGGACGATGCTTTTTCTGGTGAAATACTGCATTTTAAGAAAGGAGGGTTTCCAAAGCTGAAGGAGTTGGATCTCACAAGATTAAATAAACTAAGTTCTATATCTATAGACGAAGATGCTTTAGTTAATCTTGAACACTTCAGATTTAAAAACAACCCTCAATTGAAGGTTTTACCTCAAGACCTCCAAAACTTGAAAAAGCTTCAATTCCTTGGATTTGCTGAAATGCCAGTTGAATTAGTTGATAGCATTGACCCTGAGAAAGGTGGAACGCACCATTGGATTATCAATCATATTCCCCTTGTACAAATTCGTCAGAACTTTGGAGAAAAATTTCATGACTATAAGTTGCACCGCATTCCTACTCAAATCAATATCTGA

Protein sequence

>Msa0506860

MAETAVSFAVQLCQFVVEERTLVTGVESDFNDIKDDLEFIQAFLKDADRKAADDDEGGGANDGVKTWVKQVREVSFRIEDVIDEYIMCEAQRMNHSIFTAALQMFPGLLRIMNPHHQIASEIQDIKSTLGKIKERRTRFPFQSDSESGSYRGSKAPRIGDPRMAPYFIEETQVVGFESPANELVGRLLGGDNQRTLVSVVGMGGLGKTTLAKHVFDNDLVKSHFDCRSFITVSQSYTMRELFTEMIKKLCKDKNDPIPKGLQKMDDKTLIIQVNQYLESKRYLVLFDDVWKENFSDEIDLALIRNNKGSRIIVTTRNMKVAEYFKKDFPVHIHELQPLSSEKAWELFCNKAFIFELGKQCPTDLEDMSNEIVQKCGGLPLAIVAIGGLLSTKPKTIFEWEKVSRNLRMELERNVHLTSLIRILSLSYDDLPYHLKSCMLYFGIYPEDYSINRKRLTRQWMAEGFVKNGETRPLEEVAEEYLTELIQRSLVNASVLGFDGKVRSCQVHDVLREVIIKKMKDQSFCHLMHEDDEQLTIGITRRFSIAALSNNDLRNTSNSGIRAVFVFDKGELSKQFMDVLSVKFKLLKVLDFEKSSLNSIPDNLGNLFHLRYLNLSHTKVTVLPRSIGNLINLETLDLRQTQVHELPKEINKLTKLRLLPAYYRKYEGQYSMLNFTIGVKMHEGIGCLKSLQKLYFLEANHGGIKLIQELKMLKQLRKLGIKSVRQEYGNALSAAIQEMKQLESLNIGAITKDEILDLDLASAPSRLRVLNLKCRLTKLPNWIPNLKSLVKLRLGLSNFEDDPLDSLKNLPSLLRLNLWDDAFSGEILHFKKGGFPKLKELDLTRLNKLSSISIDEDALVNLEHFRFKNNPQLKVLPQDLQNLKKLQFLGFAEMPVELVDSIDPEKGGTHHWIINHIPLVQIRQNFGEKFHDYKLHRIPTQINI*