Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575110 | XP_003630987.1 | 100.000 | 108 | 0 | 0 | 1 | 108 | 1 | 108 | 1.89e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575110 | sp|Q9VI10|SMD2_DROME | 90.000 | 90 | 9 | 0 | 18 | 107 | 23 | 112 | 1.09e-46 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575110 | A0A1S2YDS1 | 100.000 | 108 | 0 | 0 | 1 | 108 | 1 | 108 | 9.03e-73 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563620 | Msa0575110 | 0.818184 | 2.238228e-52 | -8.615850e-47 |
| Msa0573520 | Msa0575110 | 0.826849 | 2.164931e-54 | -8.615850e-47 |
| Msa0575110 | Msa0718730 | 0.816750 | 4.707143e-52 | -8.615850e-47 |
| Msa0575110 | Msa1117180 | 0.803532 | 3.332595e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575110 | MtrunA17_Chr8g0392091 | 100.000 | 108 | 0 | 0 | 1 | 108 | 1 | 108 | 1.74e-76 | 221 |
| Msa0575110 | MtrunA17_Chr5g0447361 | 93.137 | 102 | 7 | 0 | 7 | 108 | 2 | 103 | 6.28e-66 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575110 | AT2G47640.3 | 93.519 | 108 | 7 | 0 | 1 | 108 | 1 | 108 | 3.58e-71 | 207 |
| Msa0575110 | AT2G47640.2 | 93.519 | 108 | 7 | 0 | 1 | 108 | 1 | 108 | 3.58e-71 | 207 |
| Msa0575110 | AT3G62840.2 | 93.519 | 108 | 7 | 0 | 1 | 108 | 1 | 108 | 3.58e-71 | 207 |
| Msa0575110 | AT2G47640.1 | 92.661 | 109 | 7 | 1 | 1 | 108 | 1 | 109 | 1.41e-69 | 203 |
| Msa0575110 | AT2G47640.4 | 92.661 | 109 | 7 | 1 | 1 | 108 | 1 | 109 | 1.41e-69 | 203 |
| Msa0575110 | AT3G62840.1 | 92.661 | 109 | 7 | 1 | 1 | 108 | 1 | 109 | 1.41e-69 | 203 |
Find 62 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGAGATACTAGCTTATT+TGG | 0.120204 | 4_1:+78876610 | None:intergenic |
| CTCCACGTTTCAATAAAATT+TGG | 0.187552 | 4_1:+78876508 | None:intergenic |
| TGCATTATTGGTATGAAATA+TGG | 0.196646 | 4_1:-78876544 | Msa0575110:three_prime_UTR |
| TCAACTTCATTAGAGGAATT+TGG | 0.199510 | 4_1:-78877943 | Msa0575110:five_prime_UTR |
| AGAGAATACATACCTCATTT+TGG | 0.226756 | 4_1:+78877898 | None:intergenic |
| TACTAAACTATTTATACTTT+TGG | 0.249365 | 4_1:+78876289 | None:intergenic |
| TGCAGTTTCAACTTCATTAG+AGG | 0.275858 | 4_1:-78877950 | Msa0575110:five_prime_UTR |
| TTATTGAAACGTGGAGAAAT+TGG | 0.278647 | 4_1:-78876501 | Msa0575110:three_prime_UTR |
| ATTCTGTCATCATTGTTCTT+AGG | 0.279548 | 4_1:-78876637 | Msa0575110:CDS |
| AAGATTGAGCTTAAATAATA+AGG | 0.285883 | 4_1:+78876321 | None:intergenic |
| ATGGAGATACTAGCTTATTT+GGG | 0.292207 | 4_1:+78876611 | None:intergenic |
| GAGTTGGATAAAAGCGGTTT+TGG | 0.304648 | 4_1:-78880684 | Msa0575110:five_prime_UTR |
| AATAGTTTAGTATTGTTTGC+TGG | 0.372271 | 4_1:-78876278 | Msa0575110:three_prime_UTR |
| TTGGTGGAGGATCTTGATTT+AGG | 0.384590 | 4_1:-78876482 | Msa0575110:three_prime_UTR |
| TTCTTTCCTTTACCAGTCTT+AGG | 0.400785 | 4_1:+78876716 | None:intergenic |
| ATCTGCTTCTGCTTGCTTCG+AGG | 0.413295 | 4_1:-78880503 | Msa0575110:intron |
| CAGATCAAAACCCTAGTTTA+CGG | 0.422578 | 4_1:+78880637 | None:intergenic |
| ATATGGTTCTTGAAAATGTC+CGG | 0.429724 | 4_1:-78876854 | Msa0575110:CDS |
| CTCAATTGTTACAGGCTGTC+GGG | 0.432771 | 4_1:-78877111 | Msa0575110:intron |
| ATCAGCAAAATGTTCCTTCG+TGG | 0.434985 | 4_1:-78876662 | Msa0575110:CDS |
| TCGTTGTTGACCCGTAAACT+AGG | 0.456360 | 4_1:-78880648 | Msa0575110:five_prime_UTR |
| AGATCAAAACCCTAGTTTAC+GGG | 0.460218 | 4_1:+78880638 | None:intergenic |
| ATACCTCAGTCCACATTTCC+CGG | 0.461626 | 4_1:+78876835 | None:intergenic |
| ATGGAATTCGAGAACCGATT+CGG | 0.469046 | 4_1:+78880535 | None:intergenic |
| ACTCTGAACAGAACAGAACT+AGG | 0.470623 | 4_1:-78880579 | Msa0575110:five_prime_UTR |
| GAACGAAAATGGGGCTGAGT+TGG | 0.475275 | 4_1:-78880700 | Msa0575110:five_prime_UTR |
| AACAAGATCAAACAAATTTG+CGG | 0.475374 | 4_1:-78876445 | Msa0575110:three_prime_UTR |
| CCATCCCTCTGTTGAAGTAG+TGG | 0.478064 | 4_1:-78876592 | Msa0575110:three_prime_UTR |
| TAGCTTACATCTTCTTCCAT+TGG | 0.480536 | 4_1:+78877774 | None:intergenic |
| CATCCCTCTGTTGAAGTAGT+GGG | 0.492663 | 4_1:-78876591 | Msa0575110:three_prime_UTR |
| CAGGTGCCTAAGACTGGTAA+AGG | 0.497162 | 4_1:-78876722 | Msa0575110:CDS |
| TTACATCTTCTTCCATTGGC+CGG | 0.497216 | 4_1:+78877778 | None:intergenic |
| TTGAAAATGTCCGGGAAATG+TGG | 0.500328 | 4_1:-78876845 | Msa0575110:CDS |
| CGTTGTTGACCCGTAAACTA+GGG | 0.505968 | 4_1:-78880647 | Msa0575110:five_prime_UTR |
| CTCATCATGAGTACAGATAG+TGG | 0.509132 | 4_1:+78877058 | None:intergenic |
| ATGTATCAGGTGCCTAAGAC+TGG | 0.510734 | 4_1:-78876728 | Msa0575110:intron |
| TTGAAACGTGGAGAAATTGG+TGG | 0.515121 | 4_1:-78876498 | Msa0575110:three_prime_UTR |
| AGAAGCAGATCTGAAATGAA+TGG | 0.518122 | 4_1:+78880516 | None:intergenic |
| TTGAGCTTAAATAATAAGGA+AGG | 0.521594 | 4_1:+78876325 | None:intergenic |
| TATAAAGAGTAGATCCGAAT+CGG | 0.525859 | 4_1:-78880549 | Msa0575110:five_prime_UTR |
| GAAGGCTCAGCCAGTCAACA+AGG | 0.537512 | 4_1:-78876693 | Msa0575110:CDS |
| TGTAGTGATGATGTATGAAA+TGG | 0.537975 | 4_1:-78876400 | Msa0575110:three_prime_UTR |
| ATGAAACGATCCTTGTTGAC+TGG | 0.541044 | 4_1:+78876683 | None:intergenic |
| ACTCAATTGTTACAGGCTGT+CGG | 0.551091 | 4_1:-78877112 | Msa0575110:intron |
| TTCTTCTTGAAGCCGGCCAA+TGG | 0.551208 | 4_1:-78877790 | Msa0575110:intron |
| GACTGGTAAAGGAAAGAAGA+AGG | 0.552162 | 4_1:-78876711 | Msa0575110:CDS |
| TGTCGGGAAGAATGAGGAAG+AGG | 0.555164 | 4_1:-78877095 | Msa0575110:CDS |
| TATGGTTCTTGAAAATGTCC+GGG | 0.564509 | 4_1:-78876853 | Msa0575110:CDS |
| TGTATGAAATGGTTCGACTC+TGG | 0.568262 | 4_1:-78876389 | Msa0575110:three_prime_UTR |
| GTCTATCAAAAGCCCTGACA+CGG | 0.582472 | 4_1:+78876883 | None:intergenic |
| CCACAGACTCTTCCAAAATG+AGG | 0.586420 | 4_1:-78877910 | Msa0575110:intron |
| TGGAGATACTAGCTTATTTG+GGG | 0.598626 | 4_1:+78876612 | None:intergenic |
| CTCTGAACAGAACAGAACTA+GGG | 0.600335 | 4_1:-78880578 | Msa0575110:five_prime_UTR |
| AAACGTGGAGAAATTGGTGG+AGG | 0.605244 | 4_1:-78876495 | Msa0575110:three_prime_UTR |
| ACAGGCTGTCGGGAAGAATG+AGG | 0.617342 | 4_1:-78877101 | Msa0575110:intron |
| GAGCCCACTACTTCAACAGA+GGG | 0.639565 | 4_1:+78876588 | None:intergenic |
| GAGGAAGAGGAATTCAACAC+TGG | 0.639973 | 4_1:-78877082 | Msa0575110:CDS |
| GGGGCTGAGTTGGATAAAAG+CGG | 0.647258 | 4_1:-78880690 | Msa0575110:five_prime_UTR |
| AGAGCCCACTACTTCAACAG+AGG | 0.653640 | 4_1:+78876587 | None:intergenic |
| CCACTACTTCAACAGAGGGA+TGG | 0.654111 | 4_1:+78876592 | None:intergenic |
| TGTCCGGGAAATGTGGACTG+AGG | 0.699661 | 4_1:-78876838 | Msa0575110:intron |
| TGATGACAGAATCTCCACGA+AGG | 0.746510 | 4_1:+78876648 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACAAGAATA+GGG | + | chr4_1:78877011-78877030 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACAAGAAT+AGG | + | chr4_1:78877012-78877031 | None:intergenic | 10.0% |
| !! | ACCAAAAAAAAATAAAAAAT+TGG | - | chr4_1:78877619-78877638 | Msa0575110:intron | 10.0% |
| !!! | TTAAATTTAGATTGATTTTA+TGG | - | chr4_1:78878308-78878327 | Msa0575110:intron | 10.0% |
| !!! | TTTTATTATGATTTTATAGT+TGG | - | chr4_1:78878569-78878588 | Msa0575110:intron | 10.0% |
| !! | TTCAAAAAAAAAAATTACAA+AGG | + | chr4_1:78878894-78878913 | None:intergenic | 10.0% |
| !! | AAATCTAAATTAAATTACAT+AGG | + | chr4_1:78878928-78878947 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTAAAAAAACAG+AGG | - | chr4_1:78879712-78879731 | Msa0575110:intron | 10.0% |
| !! | CAATACAATTAAAAGAAAAT+TGG | + | chr4_1:78876736-78876755 | None:intergenic | 15.0% |
| !!! | CAATTTTCTTTTAATTGTAT+TGG | - | chr4_1:78876734-78876753 | Msa0575110:intron | 15.0% |
| !!! | TTTTTTTTTTAGAATTGTTC+AGG | - | chr4_1:78877023-78877042 | Msa0575110:intron | 15.0% |
| !!! | AGAAAGTATATTATTAACTA+AGG | - | chr4_1:78877307-78877326 | Msa0575110:intron | 15.0% |
| !!! | GAAAGTATATTATTAACTAA+GGG | - | chr4_1:78877308-78877327 | Msa0575110:intron | 15.0% |
| !! | AAAGTATATTATTAACTAAG+GGG | - | chr4_1:78877309-78877328 | Msa0575110:intron | 15.0% |
| !!! | ATAGTGATATATTTCTTTTA+AGG | + | chr4_1:78877380-78877399 | None:intergenic | 15.0% |
| !! | TTAAAAGAAATATATCACTA+TGG | - | chr4_1:78877379-78877398 | Msa0575110:intron | 15.0% |
| !! | TAAAAGAAATATATCACTAT+GGG | - | chr4_1:78877380-78877399 | Msa0575110:intron | 15.0% |
| !!! | TTTTTTATTTTTTTTTGGTC+AGG | + | chr4_1:78877618-78877637 | None:intergenic | 15.0% |
| !!! | GCCAATTTTTTATTTTTTTT+TGG | + | chr4_1:78877623-78877642 | None:intergenic | 15.0% |
| !! | ATCAGTTATTAAATGATAAA+AGG | + | chr4_1:78878979-78878998 | None:intergenic | 15.0% |
| !!! | TACTAAACTATTTATACTTT+TGG | + | chr4_1:78880683-78880702 | None:intergenic | 15.0% |
| !! | ACAATAAAAAACGCAAAAAA+TGG | + | chr4_1:78876691-78876710 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTGATTGTTGTT+TGG | - | chr4_1:78876701-78876720 | Msa0575110:CDS | 20.0% |
| !! | AAGTATATTATTAACTAAGG+GGG | - | chr4_1:78877310-78877329 | Msa0575110:intron | 20.0% |
| !!! | GTAAGAAAGTATAAAGAAAA+AGG | - | chr4_1:78877332-78877351 | Msa0575110:intron | 20.0% |
| !! | AGGTATATTTAGTATTAATC+TGG | - | chr4_1:78877352-78877371 | Msa0575110:intron | 20.0% |
| !! | GGTATATTTAGTATTAATCT+GGG | - | chr4_1:78877353-78877372 | Msa0575110:intron | 20.0% |
| !!! | TCACTCTTTTATATAGTATT+GGG | + | chr4_1:78877411-78877430 | None:intergenic | 20.0% |
| !!! | TTCACTCTTTTATATAGTAT+TGG | + | chr4_1:78877412-78877431 | None:intergenic | 20.0% |
| !! | AGTTATAAAGAAAAAACTGA+CGG | + | chr4_1:78877539-78877558 | None:intergenic | 20.0% |
| !! | AATATTCTTCTTAGAATTTG+TGG | + | chr4_1:78877930-78877949 | None:intergenic | 20.0% |
| !! | AAAAGATCATAGTAAAACAT+GGG | + | chr4_1:78878191-78878210 | None:intergenic | 20.0% |
| !! | AAAAAGATCATAGTAAAACA+TGG | + | chr4_1:78878192-78878211 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTTTGCAATTTTA+CGG | - | chr4_1:78878209-78878228 | Msa0575110:intron | 20.0% |
| !!! | ATGTTTTATCATTACATAAC+TGG | - | chr4_1:78879494-78879513 | Msa0575110:intron | 20.0% |
| !!! | TGTTTTATCATTACATAACT+GGG | - | chr4_1:78879495-78879514 | Msa0575110:intron | 20.0% |
| !!! | ACTTTGACTTTAATGTTAAA+TGG | - | chr4_1:78879790-78879809 | Msa0575110:intron | 20.0% |
| !! | AAGATTGAGCTTAAATAATA+AGG | + | chr4_1:78880651-78880670 | None:intergenic | 20.0% |
| ! | AAAATGGAAAACATAAGCAA+AGG | + | chr4_1:78876675-78876694 | None:intergenic | 25.0% |
| !! | TGTTAAGAATTTTCCCTTAT+AGG | - | chr4_1:78876773-78876792 | Msa0575110:intron | 25.0% |
| !! | AGAATTAGCTTATCCTATAA+GGG | + | chr4_1:78876789-78876808 | None:intergenic | 25.0% |
| !! | AAGAATTAGCTTATCCTATA+AGG | + | chr4_1:78876790-78876809 | None:intergenic | 25.0% |
| !!! | AATTCTTTTGTTTACTCCAT+AGG | - | chr4_1:78876803-78876822 | Msa0575110:intron | 25.0% |
| !! | ATTAGTTTAATCATCATCAG+AGG | + | chr4_1:78876911-78876930 | None:intergenic | 25.0% |
| ! | AAAAAAAACAAGAATAGGGA+TGG | + | chr4_1:78877007-78877026 | None:intergenic | 25.0% |
| ! | TGAATATGCGTTTATATAAG+CGG | - | chr4_1:78877083-78877102 | Msa0575110:CDS | 25.0% |
| ! | TTAAGTGTAATTACAAGTGT+TGG | + | chr4_1:78877797-78877816 | None:intergenic | 25.0% |
| !! | ACATAATTGATTCATTAGCA+AGG | + | chr4_1:78878253-78878272 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTCACGATTTTC+AGG | - | chr4_1:78878282-78878301 | Msa0575110:intron | 25.0% |
| ! | CATAATAAAAACACAAGAGA+TGG | + | chr4_1:78878559-78878578 | None:intergenic | 25.0% |
| !! | TCAATATGCTCTATTTGTTT+TGG | - | chr4_1:78879440-78879459 | Msa0575110:intron | 25.0% |
| !!! | ATTTGAATTTACTTTTCTGC+TGG | - | chr4_1:78880192-78880211 | Msa0575110:intron | 25.0% |
| ! | TGCATTATTGGTATGAAATA+TGG | - | chr4_1:78880425-78880444 | Msa0575110:intron | 25.0% |
| ! | AACAAGATCAAACAAATTTG+CGG | - | chr4_1:78880524-78880543 | Msa0575110:five_prime_UTR | 25.0% |
| ! | TTGAGCTTAAATAATAAGGA+AGG | + | chr4_1:78880647-78880666 | None:intergenic | 25.0% |
| !!! | AACTATTTATACTTTTGGAG+CGG | + | chr4_1:78880678-78880697 | None:intergenic | 25.0% |
| ! | AATAGTTTAGTATTGTTTGC+TGG | - | chr4_1:78880691-78880710 | Msa0575110:five_prime_UTR | 25.0% |
| TATAAAGAGTAGATCCGAAT+CGG | - | chr4_1:78876420-78876439 | Msa0575110:three_prime_UTR | 30.0% | |
| ! | TTCTGAAAAAAAAGTCTCTG+AGG | - | chr4_1:78876575-78876594 | Msa0575110:three_prime_UTR | 30.0% |
| TAATCCATGCGGAAATTATA+TGG | - | chr4_1:78876632-78876651 | Msa0575110:CDS | 30.0% | |
| !! | AATTTAGTGTTTTTGCTCCA+AGG | - | chr4_1:78876846-78876865 | Msa0575110:CDS | 30.0% |
| TATTCCATGCGGAAAATATA+TGG | - | chr4_1:78876949-78876968 | Msa0575110:intron | 30.0% | |
| GAATATGCGTTTATATAAGC+GGG | - | chr4_1:78877084-78877103 | Msa0575110:CDS | 30.0% | |
| AATATGCGTTTATATAAGCG+GGG | - | chr4_1:78877085-78877104 | Msa0575110:CDS | 30.0% | |
| !! | CTTTTATATAGTATTGGGCT+AGG | + | chr4_1:78877406-78877425 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTTGGTCAGGATC+TGG | + | chr4_1:78877612-78877631 | None:intergenic | 30.0% |
| TAAAATTATTAGCCAGTGTC+CGG | - | chr4_1:78877830-78877849 | Msa0575110:intron | 30.0% | |
| TCTTCTTAGAATTTGTGGTT+GGG | + | chr4_1:78877925-78877944 | None:intergenic | 30.0% | |
| TTCTTCTTAGAATTTGTGGT+TGG | + | chr4_1:78877926-78877945 | None:intergenic | 30.0% | |
| GGAAATAGGAACAAAAATCA+AGG | + | chr4_1:78877995-78878014 | None:intergenic | 30.0% | |
| ! | TTTGTTCCTATTTCCTCTTT+TGG | - | chr4_1:78878000-78878019 | Msa0575110:intron | 30.0% |
| ! | TTGTCCATGCAGAAATTTTA+TGG | - | chr4_1:78878099-78878118 | Msa0575110:intron | 30.0% |
| ! | ATCATCAGAGGATTTTTGAA+TGG | + | chr4_1:78878423-78878442 | None:intergenic | 30.0% |
| ATTTGTTTGATCATCATCAG+AGG | + | chr4_1:78878435-78878454 | None:intergenic | 30.0% | |
| AATAAAAACACAAGAGATGG+AGG | + | chr4_1:78878556-78878575 | None:intergenic | 30.0% | |
| !! | AAATTTTAGCAGTTGCTGTT+TGG | - | chr4_1:78878609-78878628 | Msa0575110:intron | 30.0% |
| !!! | TTGTTCCAATTGGCTTTTTT+TGG | - | chr4_1:78878636-78878655 | Msa0575110:intron | 30.0% |
| TATAATTTGATCATCCTCAG+AGG | + | chr4_1:78878741-78878760 | None:intergenic | 30.0% | |
| TTTAACATGCGGAAATTTCA+TGG | - | chr4_1:78878778-78878797 | Msa0575110:intron | 30.0% | |
| ATCATACTGAAACAGAGATT+TGG | + | chr4_1:78878863-78878882 | None:intergenic | 30.0% | |
| TCAACTTCATTAGAGGAATT+TGG | - | chr4_1:78879026-78879045 | Msa0575110:intron | 30.0% | |
| ! | AGAGAATACATACCTCATTT+TGG | + | chr4_1:78879074-78879093 | None:intergenic | 30.0% |
| ! | TTGATTTTTCTTCTTGAAGC+CGG | - | chr4_1:78879172-78879191 | Msa0575110:intron | 30.0% |
| TTTGCATTATGATCCTGATA+TGG | - | chr4_1:78879250-78879269 | Msa0575110:intron | 30.0% | |
| TGTTCTATTTAGTGCACATT+TGG | - | chr4_1:78879288-78879307 | Msa0575110:intron | 30.0% | |
| TGTAGCTTCTGTTAAAATCA+AGG | + | chr4_1:78879347-78879366 | None:intergenic | 30.0% | |
| !! | ATTTTAACAGAAGCTACACT+TGG | - | chr4_1:78879349-78879368 | Msa0575110:intron | 30.0% |
| TGAAATCACAATTCTGAATC+AGG | + | chr4_1:78879466-78879485 | None:intergenic | 30.0% | |
| ATCATTACATAACTGGGTAA+AGG | - | chr4_1:78879501-78879520 | Msa0575110:intron | 30.0% | |
| AAGAAAGAAAAAAGAAGACC+GGG | + | chr4_1:78879745-78879764 | None:intergenic | 30.0% | |
| GAAGAAAGAAAAAAGAAGAC+CGG | + | chr4_1:78879746-78879765 | None:intergenic | 30.0% | |
| ! | GATTTTACAAACACTTATGC+AGG | - | chr4_1:78880026-78880045 | Msa0575110:intron | 30.0% |
| ! | CGTAACAACAAAAAGCTTTT+AGG | - | chr4_1:78880063-78880082 | Msa0575110:intron | 30.0% |
| ! | TTTTGATAGACACTGCAATA+TGG | - | chr4_1:78880098-78880117 | Msa0575110:intron | 30.0% |
| ATATGGTTCTTGAAAATGTC+CGG | - | chr4_1:78880115-78880134 | Msa0575110:intron | 30.0% | |
| ATGAAAATTGCTTCTCTACT+TGG | - | chr4_1:78880166-78880185 | Msa0575110:intron | 30.0% | |
| ATTCTGTCATCATTGTTCTT+AGG | - | chr4_1:78880332-78880351 | Msa0575110:intron | 30.0% | |
| ! | ATGGAGATACTAGCTTATTT+GGG | + | chr4_1:78880361-78880380 | None:intergenic | 30.0% |
| !!! | GCTTTGTTTTCTTGCATTAT+TGG | - | chr4_1:78880413-78880432 | Msa0575110:intron | 30.0% |
| ! | AGCCAAATTTTATTGAAACG+TGG | - | chr4_1:78880459-78880478 | Msa0575110:intron | 30.0% |
| CTCCACGTTTCAATAAAATT+TGG | + | chr4_1:78880464-78880483 | None:intergenic | 30.0% | |
| TTATTGAAACGTGGAGAAAT+TGG | - | chr4_1:78880468-78880487 | Msa0575110:intron | 30.0% | |
| ! | TGTAGTGATGATGTATGAAA+TGG | - | chr4_1:78880569-78880588 | Msa0575110:five_prime_UTR | 30.0% |
| !!! | ACTATTTATACTTTTGGAGC+GGG | + | chr4_1:78880677-78880696 | None:intergenic | 30.0% |
| ! | AGTTGGATAAAAGCGGTTTT+GGG | - | chr4_1:78876286-78876305 | Msa0575110:three_prime_UTR | 35.0% |
| AGATCAAAACCCTAGTTTAC+GGG | + | chr4_1:78876334-78876353 | None:intergenic | 35.0% | |
| CAGATCAAAACCCTAGTTTA+CGG | + | chr4_1:78876335-78876354 | None:intergenic | 35.0% | |
| ! | AGAAGCAGATCTGAAATGAA+TGG | + | chr4_1:78876456-78876475 | None:intergenic | 35.0% |
| AAGCGTGAAGTTGAAGAAAA+TGG | + | chr4_1:78876502-78876521 | None:intergenic | 35.0% | |
| CATCAGAATATCATGACCTA+TGG | + | chr4_1:78876822-78876841 | None:intergenic | 35.0% | |
| TCATCAGAGGCTTATTGAAT+GGG | + | chr4_1:78876898-78876917 | None:intergenic | 35.0% | |
| ATCATCAGAGGCTTATTGAA+TGG | + | chr4_1:78876899-78876918 | None:intergenic | 35.0% | |
| ! | TATTTTCCGCATGGAATACT+CGG | + | chr4_1:78876947-78876966 | None:intergenic | 35.0% |
| CGCATATTCAACACATATAC+AGG | + | chr4_1:78877073-78877092 | None:intergenic | 35.0% | |
| ATATGCGTTTATATAAGCGG+GGG | - | chr4_1:78877086-78877105 | Msa0575110:CDS | 35.0% | |
| CTAAGAGGAGAGAATAACTA+GGG | + | chr4_1:78877444-78877463 | None:intergenic | 35.0% | |
| AGATTGAAGAGAAGTAGATC+TGG | + | chr4_1:78877484-78877503 | None:intergenic | 35.0% | |
| !! | GTAATTACAAGTGTTGGTGT+CGG | + | chr4_1:78877791-78877810 | None:intergenic | 35.0% |
| GAATCACCAAAAGAGGAAAT+AGG | + | chr4_1:78878009-78878028 | None:intergenic | 35.0% | |
| TCAGAGGCTTTACATTTAAG+TGG | + | chr4_1:78878045-78878064 | None:intergenic | 35.0% | |
| ACTTAAATGTAAAGCCTCTG+AGG | - | chr4_1:78878044-78878063 | Msa0575110:intron | 35.0% | |
| ATTTGTTTGATCATCCTCAG+AGG | + | chr4_1:78878061-78878080 | None:intergenic | 35.0% | |
| GTCTCCATAAAATTTCTGCA+TGG | + | chr4_1:78878106-78878125 | None:intergenic | 35.0% | |
| ! | GATTTTTGAATGGAGGTTTC+AGG | + | chr4_1:78878413-78878432 | None:intergenic | 35.0% |
| ! | ATCAGAGGATTTTTGAATGG+AGG | + | chr4_1:78878420-78878439 | None:intergenic | 35.0% |
| TTGTCCATGCGGAAATTATA+TGG | - | chr4_1:78878473-78878492 | Msa0575110:intron | 35.0% | |
| ! | GTTTGGTTTCTTGTTCCAAT+TGG | - | chr4_1:78876718-78876737 | Msa0575110:CDS | 35.0% |
| AAGTGCCAAAAAAAGCCAAT+TGG | + | chr4_1:78878644-78878663 | None:intergenic | 35.0% | |
| GTTCTTCTGAGTTTAACATG+CGG | - | chr4_1:78878767-78878786 | Msa0575110:intron | 35.0% | |
| TGCAGTTTCAACTTCATTAG+AGG | - | chr4_1:78879019-78879038 | Msa0575110:intron | 35.0% | |
| TAGCTTACATCTTCTTCCAT+TGG | + | chr4_1:78879198-78879217 | None:intergenic | 35.0% | |
| ACAGATATGCAATCCATATC+AGG | + | chr4_1:78879266-78879285 | None:intergenic | 35.0% | |
| ATTTGGATTGACCTTGAGTT+TGG | - | chr4_1:78879305-78879324 | Msa0575110:intron | 35.0% | |
| TGAGTTTGACTAAATCATGC+TGG | + | chr4_1:78879396-78879415 | None:intergenic | 35.0% | |
| CTGACATACTCAATTGTTAC+AGG | - | chr4_1:78879850-78879869 | Msa0575110:intron | 35.0% | |
| TACTGTGTGTTCTTCTTGAT+CGG | - | chr4_1:78879981-78880000 | Msa0575110:intron | 35.0% | |
| TATGGTTCTTGAAAATGTCC+GGG | - | chr4_1:78880116-78880135 | Msa0575110:intron | 35.0% | |
| !! | TGAATTTACTTTTCTGCTGG+TGG | - | chr4_1:78880195-78880214 | Msa0575110:intron | 35.0% |
| ATGTTCTGCTTGTATGTATC+AGG | - | chr4_1:78880228-78880247 | Msa0575110:intron | 35.0% | |
| TTCTTTCCTTTACCAGTCTT+AGG | + | chr4_1:78880256-78880275 | None:intergenic | 35.0% | |
| ! | TGGAGATACTAGCTTATTTG+GGG | + | chr4_1:78880360-78880379 | None:intergenic | 35.0% |
| ! | GATGGAGATACTAGCTTATT+TGG | + | chr4_1:78880362-78880381 | None:intergenic | 35.0% |
| !!! | AAGTAGTGGGCTCTTATTTT+TGG | - | chr4_1:78880391-78880410 | Msa0575110:intron | 35.0% |
| !!! | CTATTTATACTTTTGGAGCG+GGG | + | chr4_1:78880676-78880695 | None:intergenic | 35.0% |
| ! | GAGTTGGATAAAAGCGGTTT+TGG | - | chr4_1:78876285-78876304 | Msa0575110:three_prime_UTR | 40.0% |
| ACTCTGAACAGAACAGAACT+AGG | - | chr4_1:78876390-78876409 | Msa0575110:three_prime_UTR | 40.0% | |
| CTCTGAACAGAACAGAACTA+GGG | - | chr4_1:78876391-78876410 | Msa0575110:three_prime_UTR | 40.0% | |
| ATGGAATTCGAGAACCGATT+CGG | + | chr4_1:78876437-78876456 | None:intergenic | 40.0% | |
| GTTCTTCTGAGTAATCCATG+CGG | - | chr4_1:78876621-78876640 | Msa0575110:exon | 40.0% | |
| GTCTCCATATAATTTCCGCA+TGG | + | chr4_1:78876639-78876658 | None:intergenic | 40.0% | |
| AAGCAAAGGCTATTCAGTTC+AGG | + | chr4_1:78876661-78876680 | None:intergenic | 40.0% | |
| !!! | TTTGCTCCAAGGTTTTTAGC+TGG | - | chr4_1:78876857-78876876 | Msa0575110:CDS | 40.0% |
| GCTTATTGAATGGGGTTTGA+AGG | + | chr4_1:78876889-78876908 | None:intergenic | 40.0% | |
| CATCAGAGGCTTATTGAATG+GGG | + | chr4_1:78876897-78876916 | None:intergenic | 40.0% | |
| ! | GTCTCCATATATTTTCCGCA+TGG | + | chr4_1:78876956-78876975 | None:intergenic | 40.0% |
| TAAGAAAGCCTCTTCAGTTC+AGG | + | chr4_1:78876978-78876997 | None:intergenic | 40.0% | |
| TAAGATCGAGGAACGTAACA+CGG | - | chr4_1:78877208-78877227 | Msa0575110:intron | 40.0% | |
| TTACAAGTTTGCCCTCAAGT+GGG | + | chr4_1:78877244-78877263 | None:intergenic | 40.0% | |
| GCTAAGAGGAGAGAATAACT+AGG | + | chr4_1:78877445-78877464 | None:intergenic | 40.0% | |
| TGAAGAGAAGTAGATCTGGA+TGG | + | chr4_1:78877480-78877499 | None:intergenic | 40.0% | |
| GACGGATGATGAAGAGAAAA+TGG | + | chr4_1:78877521-78877540 | None:intergenic | 40.0% | |
| CAAAGGAGAGAATGAGAAGA+AGG | + | chr4_1:78877576-78877595 | None:intergenic | 40.0% | |
| AAGGCAAGAATCACCAAAAG+AGG | + | chr4_1:78878016-78878035 | None:intergenic | 40.0% | |
| !! | TCTTTTGGTGATTCTTGCCT+TGG | - | chr4_1:78878015-78878034 | Msa0575110:intron | 40.0% |
| TACATTTAAGTGGTGCTCCA+AGG | + | chr4_1:78878035-78878054 | None:intergenic | 40.0% | |
| TTAACAAGCCTCTTCAGTTC+AGG | + | chr4_1:78878128-78878147 | None:intergenic | 40.0% | |
| ! | CTCAAAGCTTTAATGCGAGT+AGG | - | chr4_1:78878350-78878369 | Msa0575110:intron | 40.0% |
| !! | ATGCGAGTAGGTCTTGTTTA+AGG | - | chr4_1:78878362-78878381 | Msa0575110:intron | 40.0% |
| TAATTTCCGCATGGACAACT+CGG | + | chr4_1:78878471-78878490 | None:intergenic | 40.0% | |
| GTCTCCATATAATTTCCGCA+TGG | + | chr4_1:78876639-78876658 | None:intergenic | 40.0% | |
| ATAGAAAGCCTCTTCAGTTC+AGG | + | chr4_1:78878502-78878521 | None:intergenic | 40.0% | |
| GGATATGACACTAGGGTAAT+GGG | + | chr4_1:78878535-78878554 | None:intergenic | 40.0% | |
| AGGATATGACACTAGGGTAA+TGG | + | chr4_1:78878536-78878555 | None:intergenic | 40.0% | |
| AGATGGAGGATATGACACTA+GGG | + | chr4_1:78878542-78878561 | None:intergenic | 40.0% | |
| AAACAGAGATTTGGAAGCCA+TGG | + | chr4_1:78878854-78878873 | None:intergenic | 40.0% | |
| ACAAGAAAGCAATGAGCTGA+AGG | + | chr4_1:78878954-78878973 | None:intergenic | 40.0% | |
| TGAGGTATGTATTCTCTTGC+TGG | - | chr4_1:78879077-78879096 | Msa0575110:intron | 40.0% | |
| TTACATCTTCTTCCATTGGC+CGG | + | chr4_1:78879194-78879213 | None:intergenic | 40.0% | |
| ! | TGAAAGTCAGCTTTGTGTTG+TGG | - | chr4_1:78879588-78879607 | Msa0575110:intron | 40.0% |
| TCTTTCTTCATGCGTCACAA+TGG | - | chr4_1:78879757-78879776 | Msa0575110:intron | 40.0% | |
| ACTCAATTGTTACAGGCTGT+CGG | - | chr4_1:78879857-78879876 | Msa0575110:intron | 40.0% | |
| CTCATCATGAGTACAGATAG+TGG | + | chr4_1:78879914-78879933 | None:intergenic | 40.0% | |
| GAGTGTGAAAAACAACACAC+AGG | - | chr4_1:78879931-78879950 | Msa0575110:intron | 40.0% | |
| TTGAAAATGTCCGGGAAATG+TGG | - | chr4_1:78880124-78880143 | Msa0575110:intron | 40.0% | |
| GACTGGTAAAGGAAAGAAGA+AGG | - | chr4_1:78880258-78880277 | Msa0575110:intron | 40.0% | |
| ATGAAACGATCCTTGTTGAC+TGG | + | chr4_1:78880289-78880308 | None:intergenic | 40.0% | |
| ATCAGCAAAATGTTCCTTCG+TGG | - | chr4_1:78880307-78880326 | Msa0575110:intron | 40.0% | |
| TTGAAACGTGGAGAAATTGG+TGG | - | chr4_1:78880471-78880490 | Msa0575110:intron | 40.0% | |
| TTGGTGGAGGATCTTGATTT+AGG | - | chr4_1:78880487-78880506 | Msa0575110:intron | 40.0% | |
| TGTATGAAATGGTTCGACTC+TGG | - | chr4_1:78880580-78880599 | Msa0575110:five_prime_UTR | 40.0% | |
| TCGTTGTTGACCCGTAAACT+AGG | - | chr4_1:78876321-78876340 | Msa0575110:three_prime_UTR | 45.0% | |
| CGTTGTTGACCCGTAAACTA+GGG | - | chr4_1:78876322-78876341 | Msa0575110:three_prime_UTR | 45.0% | |
| CCTAGACCAGCTAAAAACCT+TGG | + | chr4_1:78876866-78876885 | None:intergenic | 45.0% | |
| !!! | CCAAGGTTTTTAGCTGGTCT+AGG | - | chr4_1:78876863-78876882 | Msa0575110:CDS | 45.0% |
| GTTCTTCCGAGTATTCCATG+CGG | - | chr4_1:78876938-78876957 | Msa0575110:intron | 45.0% | |
| TATGGAGACCTGAACTGAAG+AGG | - | chr4_1:78876967-78876986 | Msa0575110:intron | 45.0% | |
| GTCCCACATTAGTTGAGAGA+TGG | - | chr4_1:78877047-78877066 | Msa0575110:CDS | 45.0% | |
| GGCCATCTCTCAACTAATGT+GGG | + | chr4_1:78877052-78877071 | None:intergenic | 45.0% | |
| AGGCCATCTCTCAACTAATG+TGG | + | chr4_1:78877053-78877072 | None:intergenic | 45.0% | |
| CACTCTTCGTCAATGTAGTC+AGG | - | chr4_1:78877144-78877163 | Msa0575110:intron | 45.0% | |
| AACGAGTTCCTACGTAGGAT+CGG | - | chr4_1:78877167-78877186 | Msa0575110:intron | 45.0% | |
| GTTCGTAAGAACCCACTTGA+GGG | - | chr4_1:78877230-78877249 | Msa0575110:intron | 45.0% | |
| GTTACAAGTTTGCCCTCAAG+TGG | + | chr4_1:78877245-78877264 | None:intergenic | 45.0% | |
| AAGTAGATCTGGATGGTAGC+AGG | + | chr4_1:78877473-78877492 | None:intergenic | 45.0% | |
| CTGGAGTCATGTCTCTTCAA+AGG | + | chr4_1:78877593-78877612 | None:intergenic | 45.0% | |
| ATCAAGGTCGTAGCACGTTT+GGG | - | chr4_1:78877656-78877675 | Msa0575110:intron | 45.0% | |
| GCTACCTTGCTCTTCGTATT+AGG | - | chr4_1:78877730-78877749 | Msa0575110:intron | 45.0% | |
| CACACCTAATACGAAGAGCA+AGG | + | chr4_1:78877737-78877756 | None:intergenic | 45.0% | |
| TCTTCGTATTAGGTGTGTCC+CGG | - | chr4_1:78877740-78877759 | Msa0575110:intron | 45.0% | |
| TGAGCTATGAAGCACGGATA+CGG | + | chr4_1:78877874-78877893 | None:intergenic | 45.0% | |
| !! | AGCTCACAAGCCAGTTTTGT+CGG | - | chr4_1:78877888-78877907 | Msa0575110:intron | 45.0% |
| CTAACACAACCCGACAAAAC+TGG | + | chr4_1:78877901-78877920 | None:intergenic | 45.0% | |
| !! | CAGTTTTGTCGGGTTGTGTT+AGG | - | chr4_1:78877899-78877918 | Msa0575110:intron | 45.0% |
| TATGGAGACCTGAACTGAAG+AGG | - | chr4_1:78876967-78876986 | Msa0575110:intron | 45.0% | |
| TTCTCCTTTCCTTTCTGCCA+TGG | - | chr4_1:78878156-78878175 | Msa0575110:intron | 45.0% | |
| AAAGCCATGGCAGAAAGGAA+AGG | + | chr4_1:78878163-78878182 | None:intergenic | 45.0% | |
| ATGTGAAAGCCATGGCAGAA+AGG | + | chr4_1:78878168-78878187 | None:intergenic | 45.0% | |
| AACATGGGATGTGAAAGCCA+TGG | + | chr4_1:78878176-78878195 | None:intergenic | 45.0% | |
| TACGGAGACCTGAACTGAAT+AGG | - | chr4_1:78878227-78878246 | Msa0575110:intron | 45.0% | |
| TAGCAAGGCCTATTCAGTTC+AGG | + | chr4_1:78878238-78878257 | None:intergenic | 45.0% | |
| TATGGAGACCTGAACTGAAG+AGG | - | chr4_1:78876967-78876986 | Msa0575110:intron | 45.0% | |
| !! | ATGACACTAGGGTAATGGGA+AGG | + | chr4_1:78878531-78878550 | None:intergenic | 45.0% |
| GAGATGGAGGATATGACACT+AGG | + | chr4_1:78878543-78878562 | None:intergenic | 45.0% | |
| ! | ATACTCAAGCGGGGTTTTCA+AGG | + | chr4_1:78878716-78878735 | None:intergenic | 45.0% |
| CAAGTATGCCTCTTCAGTTC+AGG | + | chr4_1:78878807-78878826 | None:intergenic | 45.0% | |
| ! | TTTCCCCTTCTTTTGTGCCA+TGG | - | chr4_1:78878834-78878853 | Msa0575110:intron | 45.0% |
| AAGCCATGGCACAAAAGAAG+GGG | + | chr4_1:78878840-78878859 | None:intergenic | 45.0% | |
| GAAGCCATGGCACAAAAGAA+GGG | + | chr4_1:78878841-78878860 | None:intergenic | 45.0% | |
| !! | CCTCATTTTGGAAGAGTCTG+TGG | + | chr4_1:78879062-78879081 | None:intergenic | 45.0% |
| CCACAGACTCTTCCAAAATG+AGG | - | chr4_1:78879059-78879078 | Msa0575110:intron | 45.0% | |
| TGGATTGACCTTGAGTTTGG+CGG | - | chr4_1:78879308-78879327 | Msa0575110:intron | 45.0% | |
| AAAAAAGAAGACCGGGCTTC+AGG | + | chr4_1:78879738-78879757 | None:intergenic | 45.0% | |
| CTCAATTGTTACAGGCTGTC+GGG | - | chr4_1:78879858-78879877 | Msa0575110:intron | 45.0% | |
| GAGGAAGAGGAATTCAACAC+TGG | - | chr4_1:78879887-78879906 | Msa0575110:intron | 45.0% | |
| ! | AAAAGCTTTTAGGCCGTGTC+AGG | - | chr4_1:78880073-78880092 | Msa0575110:intron | 45.0% |
| ! | AAAGCTTTTAGGCCGTGTCA+GGG | - | chr4_1:78880074-78880093 | Msa0575110:intron | 45.0% |
| GTCTATCAAAAGCCCTGACA+CGG | + | chr4_1:78880089-78880108 | None:intergenic | 45.0% | |
| ATACCTCAGTCCACATTTCC+CGG | + | chr4_1:78880137-78880156 | None:intergenic | 45.0% | |
| ATGTATCAGGTGCCTAAGAC+TGG | - | chr4_1:78880241-78880260 | Msa0575110:intron | 45.0% | |
| TGATGACAGAATCTCCACGA+AGG | + | chr4_1:78880324-78880343 | None:intergenic | 45.0% | |
| CATCCCTCTGTTGAAGTAGT+GGG | - | chr4_1:78880378-78880397 | Msa0575110:intron | 45.0% | |
| AAACGTGGAGAAATTGGTGG+AGG | - | chr4_1:78880474-78880493 | Msa0575110:intron | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAAGA+TGG | + | chr4_1:78879692-78879711 | None:intergenic | 5.0% |
| ! | GGGGCTGAGTTGGATAAAAG+CGG | - | chr4_1:78876279-78876298 | Msa0575110:three_prime_UTR | 50.0% |
| ATCTGCTTCTGCTTGCTTCG+AGG | - | chr4_1:78876466-78876485 | Msa0575110:three_prime_UTR | 50.0% | |
| ! | TCATAGCTTGTGAGGCATGG+AGG | + | chr4_1:78877116-78877135 | None:intergenic | 50.0% |
| ! | GCTTCATAGCTTGTGAGGCA+TGG | + | chr4_1:78877119-78877138 | None:intergenic | 50.0% |
| GCCTCACAAGCTATGAAGCA+CGG | - | chr4_1:78877120-78877139 | Msa0575110:intron | 50.0% | |
| ! | TCCGTGCTTCATAGCTTGTG+AGG | + | chr4_1:78877124-78877143 | None:intergenic | 50.0% |
| TCAGGAACGAGTTCCTACGT+AGG | - | chr4_1:78877162-78877181 | Msa0575110:intron | 50.0% | |
| AGTTCCTACGTAGGATCGGT+GGG | - | chr4_1:78877171-78877190 | Msa0575110:intron | 50.0% | |
| GGTTCGTAAGAACCCACTTG+AGG | - | chr4_1:78877229-78877248 | Msa0575110:intron | 50.0% | |
| TAGATCTGGATGGTAGCAGG+CGG | + | chr4_1:78877470-78877489 | None:intergenic | 50.0% | |
| ACGTGCTACGACCTTGATCT+GGG | + | chr4_1:78877654-78877673 | None:intergenic | 50.0% | |
| AACGTGCTACGACCTTGATC+TGG | + | chr4_1:78877655-78877674 | None:intergenic | 50.0% | |
| GATCAAGGTCGTAGCACGTT+TGG | - | chr4_1:78877655-78877674 | Msa0575110:intron | 50.0% | |
| ATACGAAGAGCAAGGTAGCC+AGG | + | chr4_1:78877729-78877748 | None:intergenic | 50.0% | |
| TATTAGGTGTGTCCCGGTGT+CGG | - | chr4_1:78877746-78877765 | Msa0575110:intron | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | + | chr4_1:78877868-78877887 | None:intergenic | 50.0% | |
| GGCTTGTGAGCTATGAAGCA+CGG | + | chr4_1:78877880-78877899 | None:intergenic | 50.0% | |
| !! | GCTCACAAGCCAGTTTTGTC+GGG | - | chr4_1:78877889-78877908 | Msa0575110:intron | 50.0% |
| GTTCTTCCGAGTTGTCCATG+CGG | - | chr4_1:78878462-78878481 | Msa0575110:intron | 50.0% | |
| TCAGAGGCTATACTCAAGCG+GGG | + | chr4_1:78878725-78878744 | None:intergenic | 50.0% | |
| CTCAGAGGCTATACTCAAGC+GGG | + | chr4_1:78878726-78878745 | None:intergenic | 50.0% | |
| CCTCAGAGGCTATACTCAAG+CGG | + | chr4_1:78878727-78878746 | None:intergenic | 50.0% | |
| CATGGAGACCTGAACTGAAG+AGG | - | chr4_1:78878796-78878815 | Msa0575110:intron | 50.0% | |
| GGAAGCCATGGCACAAAAGA+AGG | + | chr4_1:78878842-78878861 | None:intergenic | 50.0% | |
| TTCTTCTTGAAGCCGGCCAA+TGG | - | chr4_1:78879179-78879198 | Msa0575110:intron | 50.0% | |
| CCAAGATTCCGCCAAACTCA+AGG | + | chr4_1:78879319-78879338 | None:intergenic | 50.0% | |
| CCTTGAGTTTGGCGGAATCT+TGG | - | chr4_1:78879316-78879335 | Msa0575110:intron | 50.0% | |
| AAAAACAGAGGCCTGAAGCC+CGG | - | chr4_1:78879724-78879743 | Msa0575110:intron | 50.0% | |
| TGTCGGGAAGAATGAGGAAG+AGG | - | chr4_1:78879874-78879893 | Msa0575110:intron | 50.0% | |
| CAGGTGCCTAAGACTGGTAA+AGG | - | chr4_1:78880247-78880266 | Msa0575110:intron | 50.0% | |
| CCACTACTTCAACAGAGGGA+TGG | + | chr4_1:78880380-78880399 | None:intergenic | 50.0% | |
| CCATCCCTCTGTTGAAGTAG+TGG | - | chr4_1:78880377-78880396 | Msa0575110:intron | 50.0% | |
| GAGCCCACTACTTCAACAGA+GGG | + | chr4_1:78880384-78880403 | None:intergenic | 50.0% | |
| AGAGCCCACTACTTCAACAG+AGG | + | chr4_1:78880385-78880404 | None:intergenic | 50.0% | |
| !!! | AAGCGGTTTTGGGCTGCGAA+TGG | - | chr4_1:78876296-78876315 | Msa0575110:three_prime_UTR | 55.0% |
| !!! | AGCGGTTTTGGGCTGCGAAT+GGG | - | chr4_1:78876297-78876316 | Msa0575110:three_prime_UTR | 55.0% |
| GAGTTCCTACGTAGGATCGG+TGG | - | chr4_1:78877170-78877189 | Msa0575110:intron | 55.0% | |
| GGTGAAGGGACGTAAGATCG+AGG | - | chr4_1:78877196-78877215 | Msa0575110:intron | 55.0% | |
| GGCAAACACGACCCAGATCA+AGG | - | chr4_1:78877640-78877659 | Msa0575110:intron | 55.0% | |
| AAGGTCGTAGCACGTTTGGG+TGG | - | chr4_1:78877659-78877678 | Msa0575110:intron | 55.0% | |
| AGGTCGTAGCACGTTTGGGT+GGG | - | chr4_1:78877660-78877679 | Msa0575110:intron | 55.0% | |
| ATCGTGCGATCCTACGTGCT+GGG | - | chr4_1:78877696-78877715 | Msa0575110:intron | 55.0% | |
| CCGCTTGAGTATAGCCTCTG+AGG | - | chr4_1:78878724-78878743 | Msa0575110:intron | 55.0% | |
| ACAGGCTGTCGGGAAGAATG+AGG | - | chr4_1:78879868-78879887 | Msa0575110:intron | 55.0% | |
| ! | TGTCCGGGAAATGTGGACTG+AGG | - | chr4_1:78880131-78880150 | Msa0575110:intron | 55.0% |
| GAAGGCTCAGCCAGTCAACA+AGG | - | chr4_1:78880276-78880295 | Msa0575110:intron | 55.0% | |
| !! | TAGGATCGGTGGGCTGGTGA+AGG | - | chr4_1:78877181-78877200 | Msa0575110:intron | 60.0% |
| !! | AGGATCGGTGGGCTGGTGAA+GGG | - | chr4_1:78877182-78877201 | Msa0575110:intron | 60.0% |
| GGTCGTAGCACGTTTGGGTG+GGG | - | chr4_1:78877661-78877680 | Msa0575110:intron | 60.0% | |
| GATCGTGCGATCCTACGTGC+TGG | - | chr4_1:78877695-78877714 | Msa0575110:intron | 60.0% | |
| AGGATCGAGTCCCAGCACGT+AGG | + | chr4_1:78877709-78877728 | None:intergenic | 60.0% | |
| TACGTGCTGGGACTCGATCC+TGG | - | chr4_1:78877708-78877727 | Msa0575110:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr4_1:78877762-78877781 | None:intergenic | 60.0% | |
| GGATACGGACACGGAGGACA+CGG | + | chr4_1:78877859-78877878 | None:intergenic | 60.0% | |
| AAGCACGGATACGGACACGG+AGG | + | chr4_1:78877865-78877884 | None:intergenic | 60.0% | |
| CCAGCCCACCGATCCTACGT+AGG | + | chr4_1:78877178-78877197 | None:intergenic | 65.0% | |
| CCTACGTAGGATCGGTGGGC+TGG | - | chr4_1:78877175-78877194 | Msa0575110:intron | 65.0% | |
| GGTAGCAGGCGGCAGCTAAG+AGG | + | chr4_1:78877459-78877478 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr4_1:78877761-78877780 | None:intergenic | 65.0% | |
| AGGACACGGACACCGGACAC+TGG | + | chr4_1:78877845-78877864 | None:intergenic | 65.0% | |
| GACACGGAGGACACGGACAC+CGG | + | chr4_1:78877852-78877871 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78876272 | 78880719 | 78876272 | ID=Msa0575110;Name=Msa0575110 |
| chr4_1 | mRNA | 78876272 | 78880719 | 78876272 | ID=Msa0575110-mRNA-1;Parent=Msa0575110;Name=Msa0575110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=275|1|1|1|0.6|0.5|6|353|108 |
| chr4_1 | exon | 78876272 | 78876741 | 78876272 | ID=Msa0575110-mRNA-1:exon:28027;Parent=Msa0575110-mRNA-1 |
| chr4_1 | exon | 78876839 | 78876943 | 78876839 | ID=Msa0575110-mRNA-1:exon:28026;Parent=Msa0575110-mRNA-1 |
| chr4_1 | exon | 78877039 | 78877119 | 78877039 | ID=Msa0575110-mRNA-1:exon:28025;Parent=Msa0575110-mRNA-1 |
| chr4_1 | exon | 78877782 | 78877800 | 78877782 | ID=Msa0575110-mRNA-1:exon:28024;Parent=Msa0575110-mRNA-1 |
| chr4_1 | exon | 78877911 | 78877974 | 78877911 | ID=Msa0575110-mRNA-1:exon:28023;Parent=Msa0575110-mRNA-1 |
| chr4_1 | exon | 78880504 | 78880719 | 78880504 | ID=Msa0575110-mRNA-1:exon:28022;Parent=Msa0575110-mRNA-1 |
| chr4_1 | five_prime_UTR | 78880504 | 78880719 | 78880504 | ID=Msa0575110-mRNA-1:five_prime_utr;Parent=Msa0575110-mRNA-1 |
| chr4_1 | five_prime_UTR | 78877916 | 78877974 | 78877916 | ID=Msa0575110-mRNA-1:five_prime_utr;Parent=Msa0575110-mRNA-1 |
| chr4_1 | CDS | 78877911 | 78877915 | 78877911 | ID=Msa0575110-mRNA-1:cds;Parent=Msa0575110-mRNA-1 |
| chr4_1 | CDS | 78877782 | 78877800 | 78877782 | ID=Msa0575110-mRNA-1:cds;Parent=Msa0575110-mRNA-1 |
| chr4_1 | CDS | 78877039 | 78877119 | 78877039 | ID=Msa0575110-mRNA-1:cds;Parent=Msa0575110-mRNA-1 |
| chr4_1 | CDS | 78876839 | 78876943 | 78876839 | ID=Msa0575110-mRNA-1:cds;Parent=Msa0575110-mRNA-1 |
| chr4_1 | CDS | 78876625 | 78876741 | 78876625 | ID=Msa0575110-mRNA-1:cds;Parent=Msa0575110-mRNA-1 |
| chr4_1 | three_prime_UTR | 78876272 | 78876624 | 78876272 | ID=Msa0575110-mRNA-1:three_prime_utr;Parent=Msa0575110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
