AlfalfaGEDB | Msa0577070

M. sativa cultivar zhongmu-4 / Msa0577070

KEGG: -
GO: GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577070	AER45737.2	97.006	334	3	2	18	344	2	335	0.0	670

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577070	sp\|Q39013\|NAC2_ARATH	62.759	290	102	5	58	344	1	287	1.38e-118	347

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577070	G8G271	97.006	334	3	2	18	344	2	335	0.0	670

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TFs/TRs:

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Gene ID	Type	Classification
Msa0577070	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0569380	Msa0577070	0.804472	2.125370e-49	-8.615850e-47
Msa0577070	Msa0619370	0.854499	1.182091e-61	-8.615850e-47
Msa0577070	Msa0659500	0.912459	1.901550e-83	-8.615850e-47
Msa0577070	Msa1439050	0.864288	1.353932e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577070	MtrunA17_Chr8g0384721	92.150	293	9	5	58	344	1	285	0.0	544
Msa0577070	MtrunA17_Chr3g0130731	69.024	297	69	7	58	341	1	287	2.71e-134	384
Msa0577070	MtrunA17_Chr3g0124761	63.087	298	87	7	58	344	1	286	1.09e-119	347
Msa0577070	MtrunA17_Chr2g0318101	67.683	164	39	3	64	215	15	176	6.79e-75	234
Msa0577070	MtrunA17_Chr2g0318081	67.702	161	47	2	62	221	14	170	7.81e-75	234
Msa0577070	MtrunA17_Chr7g0252971	55.838	197	72	2	64	245	8	204	3.92e-73	230
Msa0577070	MtrunA17_Chr8g0359921	68.944	161	47	2	62	221	12	170	1.43e-72	228
Msa0577070	MtrunA17_Chr5g0417791	64.103	156	55	1	62	216	1	156	3.82e-72	224
Msa0577070	MtrunA17_Chr4g0042561	63.871	155	55	1	63	216	8	162	3.95e-71	222
Msa0577070	MtrunA17_Chr4g0047841	64.773	176	38	4	63	215	14	188	4.45e-71	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577070	AT1G01720.1	62.759	290	102	5	58	344	1	287	1.41e-119	347
Msa0577070	AT5G08790.1	63.542	288	76	8	58	337	1	267	2.52e-116	338
Msa0577070	AT5G63790.1	57.009	321	91	9	33	343	19	302	8.06e-111	325
Msa0577070	AT5G63790.2	57.413	317	88	9	33	339	29	308	9.89e-111	325
Msa0577070	AT1G77450.1	60.153	261	59	7	62	319	8	226	3.94e-96	286
Msa0577070	AT1G69490.1	54.369	206	88	3	64	268	9	209	1.93e-75	233
Msa0577070	AT1G52890.1	67.702	161	47	2	62	221	12	168	6.09e-74	231
Msa0577070	AT3G15500.1	66.867	166	48	3	62	224	12	173	1.91e-73	230
Msa0577070	AT4G27410.2	69.677	155	42	2	62	215	12	162	3.28e-73	229
Msa0577070	AT1G61110.1	65.663	166	47	2	60	215	12	177	4.64e-71	224

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Find 124 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAAATGACCATTT+GGG	0.367814	4_1:-81229387	Msa0577070:three_prime_UTR
AAACCTCAGATCAAGATGAA+CGG	0.656051	4_1:-81229756	Msa0577070:CDS
AAACGGTTCAAGGCCGAACC+GGG	0.528831	4_1:-81230189	Msa0577070:CDS
AAATCAATTTCTTTGATAAT+AGG	0.219498	4_1:+81230393	None:intergenic
AACCAATTTAAAATATCCAT+GGG	0.565157	4_1:+81229336	None:intergenic
AACCCGAAAATTGATTCATT+TGG	0.363530	4_1:+81229496	None:intergenic
AACGAGGTGTAGATTCAATT+AGG	0.431824	4_1:-81229097	Msa0577070:three_prime_UTR
AAGATTCAACTGAAAATCAA+AGG	0.566776	4_1:+81229563	None:intergenic
AAGTGGAATGAATTTGTATT+GGG	0.373773	4_1:-81229603	Msa0577070:CDS
AAGTTCAAAGTGAGCCCAAG+TGG	0.609329	4_1:-81229620	Msa0577070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATAATAGGAACAGCTATA+GGG	+	chr4_1:81229266-81229285	None:intergenic	30.0%
GAAAATAAAGAGTAAGTACC+TGG	+	chr4_1:81229327-81229346	None:intergenic	30.0%
TTTACAGAAATGGCTCTTTA+CGG	-	chr4_1:81229412-81229431	Msa0577070:three_prime_UTR	30.0%
CCAAAGGAATTAAAACCAAT+TGG	-	chr4_1:81229608-81229627	Msa0577070:CDS	30.0%
ATGTACGTACTCTTAAATTG+TGG	+	chr4_1:81229687-81229706	None:intergenic	30.0%
TGTCGAATTTACAACAAGAA+AGG	-	chr4_1:81229820-81229839	Msa0577070:CDS	30.0%
GTCGAATTTACAACAAGAAA+GGG	-	chr4_1:81229821-81229840	Msa0577070:CDS	30.0%
CAATACAAATTCATTCCACT+TGG	+	chr4_1:81230067-81230086	None:intergenic	30.0%
CAAGTGGAATGAATTTGTAT+TGG	-	chr4_1:81230065-81230084	Msa0577070:CDS	30.0%
CAAATTAAATTTACTTGGGC+AGG	+	chr4_1:81230218-81230237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	81228997	81230694	81228997	ID=Msa0577070;Name=Msa0577070
chr4_1	mRNA	81228997	81230694	81228997	ID=Msa0577070-mRNA-1;Parent=Msa0577070;Name=Msa0577070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|1\|1\|1\|1\|1\|3\|467\|344
chr4_1	exon	81228997	81229889	81228997	ID=Msa0577070-mRNA-1:exon:29236;Parent=Msa0577070-mRNA-1
chr4_1	exon	81229995	81230272	81229995	ID=Msa0577070-mRNA-1:exon:29235;Parent=Msa0577070-mRNA-1
chr4_1	exon	81230364	81230694	81230364	ID=Msa0577070-mRNA-1:exon:29234;Parent=Msa0577070-mRNA-1
chr4_1	CDS	81230364	81230694	81230364	ID=Msa0577070-mRNA-1:cds;Parent=Msa0577070-mRNA-1
chr4_1	CDS	81229995	81230272	81229995	ID=Msa0577070-mRNA-1:cds;Parent=Msa0577070-mRNA-1
chr4_1	CDS	81229464	81229889	81229464	ID=Msa0577070-mRNA-1:cds;Parent=Msa0577070-mRNA-1
chr4_1	three_prime_UTR	81228997	81229463	81228997	ID=Msa0577070-mRNA-1:three_prime_utr;Parent=Msa0577070-mRNA-1

Gene Sequence

>Msa0577070

CTCCTATCCCCTATAAAACCACAACTTCTTCCTTTCTCACAACTTCGAACTCACTTCAATATCATATCCAATACTAACTACCCTAGCAGCCACCAACCAACACTGAAGAAGAAGAAGAAGAAAAAGAACAATAGTACGTATAGTATCAAGAAATTAATTGAATATACGCGAATGCAAGGAGCATTAGAATTACCACCTGGCTTCAGATTTCACCCGACTGATGATGAGCTTGTCAATCACTACTTGTGTAGAAAGTGTGCTTCCCTCCCTATAGCTGTTCCTATTATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCATCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAGTGGTATTTTTTCTCTCCAAGGGATCGTAAATATCCAAACGGTTCAAGGCCGAACCGGGCTGCGGGAACCGGATATTGGAAGGCGACCGGAGCTGATAAGCCGATTGGAAAGCCGAAGGCACTTGGGATAAAGAAAGCACTTGTTTTCTATGCTGGCAAAGCTCCCAAAGGAATTAAAACCAATTGGATCATGCATGAGTATCGTCTTGCTAATGTTGATAGATCCGCTTCAAAAAATAACCACAATTTAAGACTTGATGATTGGGTCTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAATGACACTAAACCACCACTGTTTTCTGAGGAAGCTCAATTTGAGAATGAGACAAAACCTCAGATCAAGATGAACGGCCAGGATGATTTTAGGAATAGTGATCAATTGTACACTGACACATCAGATTCGGTGCCACGGTTTCACACCGACTCAAGCGGTTCTGAGCACGTGGTTTCACCGTGCGATAAGGAAGTTCAAAGTGAGCCCAAGTGGAATGAATTTGTATTGGGCCCAGACCCAGTTTCAGCCTTTGATTTTCAGTTGAATCTTATGGATGATGGTGAAGATGACCCTTTTGCCCCTCAGGATCAGTACCAAATGAATCAATTTTCGGGTTGGCAAGATGTGTTTATGTACCTGCCCAAGTAA

Protein sequence

>Msa0577070

LLSPIKPQLLPFSQLRTHFNIISNTNYPSSHQPTLKKKKKKKNNSTYSIKKLIEYTRMQGALELPPGFRFHPTDDELVNHYLCRKCASLPIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASKNNHNLRLDDWVLCRIYNKKGKIEKYNDTKPPLFSEEAQFENETKPQIKMNGQDDFRNSDQLYTDTSDSVPRFHTDSSGSEHVVSPCDKEVQSEPKWNEFVLGPDPVSAFDFQLNLMDDGEDDPFAPQDQYQMNQFSGWQDVFMYLPK*