AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577070 MtrunA17_Chr8g0384721 92.150 293 9 5 58 344 1 285 0.0 544
Msa0577070 MtrunA17_Chr3g0130731 69.024 297 69 7 58 341 1 287 2.71e-134 384
Msa0577070 MtrunA17_Chr3g0124761 63.087 298 87 7 58 344 1 286 1.09e-119 347
Msa0577070 MtrunA17_Chr2g0318101 67.683 164 39 3 64 215 15 176 6.79e-75 234
Msa0577070 MtrunA17_Chr2g0318081 67.702 161 47 2 62 221 14 170 7.81e-75 234
Msa0577070 MtrunA17_Chr7g0252971 55.838 197 72 2 64 245 8 204 3.92e-73 230
Msa0577070 MtrunA17_Chr8g0359921 68.944 161 47 2 62 221 12 170 1.43e-72 228
Msa0577070 MtrunA17_Chr5g0417791 64.103 156 55 1 62 216 1 156 3.82e-72 224
Msa0577070 MtrunA17_Chr4g0042561 63.871 155 55 1 63 216 8 162 3.95e-71 222
Msa0577070 MtrunA17_Chr4g0047841 64.773 176 38 4 63 215 14 188 4.45e-71 224
Msa0577070 MtrunA17_Chr2g0326361 54.545 187 72 2 64 247 14 190 1.37e-69 220
Msa0577070 MtrunA17_Chr7g0263931 55.738 183 77 2 62 240 9 191 3.84e-69 219
Msa0577070 MtrunA17_Chr2g0309891 44.828 232 114 5 62 283 4 231 3.66e-58 191
Msa0577070 MtrunA17_Chr5g0417001 53.503 157 66 2 66 215 16 172 1.60e-55 186
Msa0577070 MtrunA17_Chr8g0361731 53.165 158 66 3 66 215 16 173 2.94e-55 185
Msa0577070 MtrunA17_Chr6g0453131 50.588 170 65 3 63 219 14 177 2.11e-54 183
Msa0577070 MtrunA17_Chr6g0453451 47.716 197 87 4 62 245 18 211 6.41e-54 179
Msa0577070 MtrunA17_Chr6g0484441 52.795 161 65 3 64 221 5 157 2.16e-53 178
Msa0577070 MtrunA17_Chr4g0060931 53.659 164 67 3 62 221 15 173 2.62e-53 179
Msa0577070 MtrunA17_Chr6g0481091 53.503 157 66 4 64 217 6 158 2.76e-53 175
Msa0577070 MtrunA17_Chr4g0018391 47.727 176 80 4 64 233 7 176 5.45e-52 175
Msa0577070 MtrunA17_Chr3g0139331 52.469 162 68 2 64 222 11 166 6.39e-52 175
Msa0577070 MtrunA17_Chr8g0372121 50.311 161 70 3 64 220 6 160 7.24e-52 174
Msa0577070 MtrunA17_Chr3g0091921 54.194 155 68 2 62 215 14 166 1.51e-51 173
Msa0577070 MtrunA17_Chr5g0442771 51.205 166 72 3 66 222 20 185 2.08e-51 173
Msa0577070 MtrunA17_Chr7g0253011 51.205 166 74 2 61 221 14 177 2.73e-51 174
Msa0577070 MtrunA17_Chr3g0109821 54.658 161 67 3 62 219 4 161 3.75e-51 180
Msa0577070 MtrunA17_Chr5g0433781 54.037 161 67 4 62 219 4 160 4.38e-51 179
Msa0577070 MtrunA17_Chr4g0076731 53.247 154 64 2 66 217 56 203 6.85e-51 175
Msa0577070 MtrunA17_Chr5g0398971 45.405 185 90 4 58 236 1 180 9.29e-51 172
Msa0577070 MtrunA17_Chr1g0147421 50.289 173 72 4 58 222 17 183 1.09e-50 172
Msa0577070 MtrunA17_Chr7g0214071 52.695 167 67 4 53 216 4 161 1.13e-50 169
Msa0577070 MtrunA17_Chr5g0400461 49.153 177 70 4 60 226 2 168 1.67e-50 171
Msa0577070 MtrunA17_Chr2g0316971 54.140 157 63 3 64 215 23 175 1.81e-50 172
Msa0577070 MtrunA17_Chr4g0056541 48.795 166 74 4 64 224 7 166 2.82e-50 171
Msa0577070 MtrunA17_Chr2g0309331 48.837 172 75 4 58 222 2 167 2.93e-50 171
Msa0577070 MtrunA17_Chr5g0405211 51.592 157 66 3 64 216 8 158 8.62e-50 170
Msa0577070 MtrunA17_Chr7g0217721 48.045 179 77 4 62 226 17 193 9.18e-50 169
Msa0577070 MtrunA17_Chr1g0183741 46.739 184 84 4 64 242 10 184 3.44e-49 166
Msa0577070 MtrunA17_Chr2g0311651 42.922 219 107 7 66 270 24 238 4.82e-49 167
Msa0577070 MtrunA17_Chr4g0017921 50.318 157 67 3 64 216 8 157 2.41e-48 166
Msa0577070 MtrunA17_Chr6g0461661 51.592 157 71 2 62 215 16 170 7.71e-48 165
Msa0577070 MtrunA17_Chr1g0200561 48.718 156 70 3 64 215 19 168 9.55e-48 164
Msa0577070 MtrunA17_Chr2g0311661 51.852 162 61 5 66 212 23 182 2.37e-47 162
Msa0577070 MtrunA17_Chr7g0217711 51.634 153 67 3 62 209 17 167 4.12e-47 157
Msa0577070 MtrunA17_Chr7g0261411 46.703 182 84 3 64 242 10 181 5.85e-47 160
Msa0577070 MtrunA17_Chr2g0312321 42.925 212 102 6 63 269 10 207 6.99e-47 161
Msa0577070 MtrunA17_Chr4g0054791 56.115 139 54 3 58 190 1 138 4.64e-46 159
Msa0577070 MtrunA17_Chr8g0385991 46.243 173 87 3 60 228 10 180 1.12e-45 155
Msa0577070 MtrunA17_Chr8g0346001 44.186 172 87 3 58 220 9 180 3.83e-45 159
Msa0577070 MtrunA17_Chr5g0428991 51.899 158 65 4 64 216 25 176 1.51e-44 161
Msa0577070 MtrunA17_Chr3g0144271 52.597 154 66 4 64 213 23 173 6.94e-44 156
Msa0577070 MtrunA17_Chr3g0131911 48.780 164 75 3 60 216 10 171 2.00e-43 150
Msa0577070 MtrunA17_Chr3g0130101 45.860 157 78 3 64 217 7 159 5.97e-43 152
Msa0577070 MtrunA17_Chr3g0128151 49.682 157 68 4 64 215 22 172 2.79e-42 154
Msa0577070 MtrunA17_Chr1g0201021 47.097 155 75 4 66 217 21 171 2.18e-41 152
Msa0577070 MtrunA17_Chr3g0092671 44.624 186 93 6 61 242 2 181 1.13e-40 149
Msa0577070 MtrunA17_Chr1g0197361 44.186 172 87 5 66 233 10 176 3.32e-40 149
Msa0577070 MtrunA17_Chr8g0364791 43.038 158 83 3 63 217 5 158 4.62e-40 146
Msa0577070 MtrunA17_Chr3g0128111 45.455 154 73 4 67 215 45 192 1.34e-39 140
Msa0577070 MtrunA17_Chr4g0038751 46.104 154 70 4 66 215 17 161 2.26e-39 141
Msa0577070 MtrunA17_Chr1g0197351 41.206 199 105 4 46 239 24 215 2.66e-39 145
Msa0577070 MtrunA17_Chr8g0345671 47.436 156 66 6 63 212 10 155 1.60e-37 138
Msa0577070 MtrunA17_Chr8g0384201 41.139 158 86 3 63 217 5 158 6.80e-37 138
Msa0577070 MtrunA17_Chr4g0026141 40.936 171 92 5 64 227 5 173 1.08e-35 130
Msa0577070 MtrunA17_Chr7g0266701 32.035 231 136 7 64 282 4 225 4.65e-35 128
Msa0577070 MtrunA17_Chr4g0050701 41.401 157 79 3 64 215 11 159 7.59e-34 123
Msa0577070 MtrunA17_Chr2g0321631 34.694 245 136 8 65 293 5 241 3.27e-33 123
Msa0577070 MtrunA17_Chr3g0113001 52.033 123 57 2 109 230 10 131 6.09e-33 124
Msa0577070 MtrunA17_Chr8g0345691 40.252 159 71 6 64 212 12 156 1.63e-31 122
Msa0577070 MtrunA17_Chr2g0321741 45.528 123 54 4 92 212 20 131 1.63e-30 119
Msa0577070 MtrunA17_Chr8g0384351 42.073 164 70 6 59 221 5 144 8.69e-30 112
Msa0577070 MtrunA17_Chr8g0345711 38.125 160 85 6 64 210 12 170 2.53e-29 110
Msa0577070 MtrunA17_Chr8g0345731 42.537 134 69 4 64 189 24 157 5.27e-28 107
Msa0577070 MtrunA17_Chr3g0113031 50.459 109 45 3 127 230 3 107 1.49e-25 103
Msa0577070 MtrunA17_Chr8g0345721 36.196 163 68 5 67 194 38 199 1.27e-24 99.8
Msa0577070 MtrunA17_Chr8g0345701 37.584 149 70 6 58 186 1 146 4.47e-23 94.4
Msa0577070 MtrunA17_Chr3g0130321 33.333 165 95 5 58 213 1 159 1.24e-22 94.0
Msa0577070 MtrunA17_Chr7g0243371 54.667 75 31 1 117 188 17 91 6.84e-21 86.7
Msa0577070 MtrunA17_Chr8g0345741 36.719 128 62 4 91 213 19 132 7.80e-21 87.8
Msa0577070 MtrunA17_Chr7g0251661 30.882 136 87 4 60 191 6 138 1.11e-17 79.3
Msa0577070 MtrunA17_Chr7g0251651 31.387 137 87 4 59 191 13 146 1.38e-17 79.7
Msa0577070 MtrunA17_Chr7g0251671 29.323 133 87 4 63 191 9 138 1.01e-15 73.9
Msa0577070 MtrunA17_Chr7g0274971 32.515 163 91 8 70 222 11 164 1.67e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577070 AT1G01720.1 62.759 290 102 5 58 344 1 287 1.41e-119 347
Msa0577070 AT5G08790.1 63.542 288 76 8 58 337 1 267 2.52e-116 338
Msa0577070 AT5G63790.1 57.009 321 91 9 33 343 19 302 8.06e-111 325
Msa0577070 AT5G63790.2 57.413 317 88 9 33 339 29 308 9.89e-111 325
Msa0577070 AT1G77450.1 60.153 261 59 7 62 319 8 226 3.94e-96 286
Msa0577070 AT1G69490.1 54.369 206 88 3 64 268 9 209 1.93e-75 233
Msa0577070 AT1G52890.1 67.702 161 47 2 62 221 12 168 6.09e-74 231
Msa0577070 AT3G15500.1 66.867 166 48 3 62 224 12 173 1.91e-73 230
Msa0577070 AT4G27410.2 69.677 155 42 2 62 215 12 162 3.28e-73 229
Msa0577070 AT1G61110.1 65.663 166 47 2 60 215 12 177 4.64e-71 224
Msa0577070 AT3G04070.2 64.596 161 48 2 64 215 10 170 2.09e-69 221
Msa0577070 AT3G04070.1 60.452 177 45 3 64 215 10 186 4.69e-69 220
Msa0577070 AT4G27410.3 62.791 172 42 3 62 215 12 179 9.38e-69 218
Msa0577070 AT3G15510.1 65.839 161 39 4 68 215 21 178 1.03e-66 214
Msa0577070 AT1G52880.1 65.409 159 42 3 68 215 21 177 2.41e-62 202
Msa0577070 AT5G39610.1 50.000 184 84 3 47 229 3 179 5.49e-57 187
Msa0577070 AT5G61430.1 50.575 174 83 2 49 221 1 172 3.30e-56 186
Msa0577070 AT5G07680.1 56.329 158 60 3 62 215 15 167 2.61e-55 184
Msa0577070 AT5G07680.2 54.878 164 65 3 62 221 1 159 2.83e-55 183
Msa0577070 AT3G18400.1 54.375 160 65 3 64 221 5 158 5.47e-55 182
Msa0577070 AT1G26870.1 51.807 166 60 3 64 215 16 175 8.00e-55 185
Msa0577070 AT5G39820.1 48.276 174 70 3 66 219 22 195 3.56e-54 181
Msa0577070 AT3G29035.1 48.223 197 89 4 62 255 22 208 5.05e-54 180
Msa0577070 AT1G76420.1 54.777 157 63 4 64 217 22 173 5.10e-54 181
Msa0577070 AT2G33480.2 54.717 159 62 3 59 216 10 159 2.63e-53 177
Msa0577070 AT3G04060.1 51.445 173 74 3 59 226 15 182 3.18e-53 179
Msa0577070 AT2G33480.1 55.346 159 63 4 59 216 10 161 5.29e-53 176
Msa0577070 AT5G62380.2 46.486 185 89 3 58 238 1 179 6.36e-53 178
Msa0577070 AT5G62380.1 46.486 185 89 3 58 238 1 179 6.36e-53 178
Msa0577070 AT3G03200.1 53.503 157 67 3 62 215 4 157 1.17e-52 181
Msa0577070 AT3G17730.1 52.866 157 67 3 64 217 6 158 1.52e-52 174
Msa0577070 AT2G24430.2 52.469 162 69 3 64 222 16 172 1.60e-52 176
Msa0577070 AT2G24430.1 52.469 162 69 3 64 222 16 172 1.60e-52 176
Msa0577070 AT5G17260.1 54.140 157 66 3 62 215 4 157 1.82e-51 177
Msa0577070 AT2G43000.1 51.656 151 69 2 66 215 20 167 6.08e-51 171
Msa0577070 AT5G53950.1 53.416 161 58 3 64 215 17 169 7.28e-51 174
Msa0577070 AT2G02450.1 52.597 154 65 2 66 217 53 200 1.27e-50 173
Msa0577070 AT2G02450.2 52.597 154 65 2 66 217 53 200 1.47e-50 174
Msa0577070 AT3G15170.1 50.299 167 66 3 64 221 20 178 1.62e-50 171
Msa0577070 AT4G36160.2 49.419 172 75 4 49 216 1 164 1.74e-50 172
Msa0577070 AT5G13180.1 55.000 160 61 3 60 216 10 161 1.94e-50 169
Msa0577070 AT1G12260.2 43.000 200 97 5 58 249 1 191 2.04e-50 171
Msa0577070 AT5G18270.1 52.469 162 61 3 62 215 19 172 3.71e-50 171
Msa0577070 AT5G18270.2 52.469 162 61 3 62 215 19 172 4.69e-50 170
Msa0577070 AT1G12260.1 43.000 200 97 5 58 249 1 191 4.88e-50 172
Msa0577070 AT4G36160.1 51.250 160 68 3 61 216 7 160 5.29e-50 171
Msa0577070 AT4G36160.3 51.250 160 68 3 61 216 7 160 5.29e-50 171
Msa0577070 AT1G62700.1 49.080 163 73 3 58 216 1 157 5.83e-50 172
Msa0577070 AT1G62700.2 49.080 163 73 3 58 216 1 157 5.83e-50 172
Msa0577070 AT1G56010.2 49.432 176 82 4 63 234 18 190 8.20e-50 169
Msa0577070 AT5G46590.1 51.875 160 70 4 60 215 2 158 8.65e-50 168
Msa0577070 AT2G18060.3 49.689 161 71 3 61 217 6 160 8.71e-50 170
Msa0577070 AT2G18060.1 49.689 161 71 3 61 217 6 160 8.71e-50 170
Msa0577070 AT1G79580.3 47.619 168 76 3 60 222 13 173 1.69e-49 170
Msa0577070 AT1G79580.5 47.619 168 76 3 60 222 13 173 1.69e-49 170
Msa0577070 AT1G79580.4 47.619 168 76 3 60 222 13 173 1.69e-49 170
Msa0577070 AT1G79580.2 47.619 168 76 3 60 222 13 173 1.69e-49 170
Msa0577070 AT1G79580.1 47.619 168 76 3 60 222 13 173 1.69e-49 170
Msa0577070 AT4G17980.1 51.553 161 71 4 60 215 2 160 2.62e-49 166
Msa0577070 AT3G10490.1 46.703 182 84 4 61 239 24 195 3.81e-49 165
Msa0577070 AT4G10350.1 48.256 172 81 3 64 231 9 176 4.18e-49 168
Msa0577070 AT4G17980.2 51.553 161 71 4 60 215 2 160 4.19e-49 166
Msa0577070 AT1G71930.2 49.359 156 69 3 64 215 9 158 5.98e-49 167
Msa0577070 AT1G71930.1 49.359 156 69 3 64 215 9 158 5.98e-49 167
Msa0577070 AT1G54330.1 51.534 163 69 3 62 221 4 159 1.39e-48 166
Msa0577070 AT3G10480.1 46.703 182 84 4 61 239 24 195 2.39e-48 169
Msa0577070 AT1G33280.1 48.193 166 75 3 64 225 8 166 3.49e-48 164
Msa0577070 AT3G12977.1 50.327 153 72 2 64 215 18 167 3.61e-48 164
Msa0577070 AT5G46590.2 53.472 144 63 2 60 199 2 145 4.52e-48 164
Msa0577070 AT1G65910.1 51.205 166 71 4 62 221 4 165 5.02e-48 171
Msa0577070 AT5G66300.1 49.080 163 74 3 61 219 9 166 5.51e-48 164
Msa0577070 AT3G10480.2 47.253 182 82 5 61 239 24 194 6.26e-48 167
Msa0577070 AT3G10490.2 46.703 182 84 4 61 239 24 195 1.73e-47 166
Msa0577070 AT3G61910.1 39.500 200 108 3 58 244 5 204 2.34e-47 163
Msa0577070 AT1G32510.1 46.524 187 86 4 58 234 1 183 3.45e-47 161
Msa0577070 AT2G46770.1 44.767 172 82 3 58 216 10 181 6.57e-47 163
Msa0577070 AT1G33060.2 42.793 222 109 6 50 265 7 216 1.25e-46 167
Msa0577070 AT1G33060.1 42.793 222 109 6 50 265 7 216 1.38e-46 167
Msa0577070 AT5G24590.2 49.682 157 71 3 64 216 13 165 7.94e-46 162
Msa0577070 AT4G28530.1 46.821 173 63 4 63 215 9 172 1.76e-45 159
Msa0577070 AT4G35580.3 52.229 157 64 4 64 215 9 159 2.41e-45 162
Msa0577070 AT1G32770.1 44.379 169 84 3 58 216 10 178 2.57e-45 159
Msa0577070 AT4G35580.2 52.229 157 64 4 64 215 9 159 2.60e-45 162
Msa0577070 AT4G35580.1 52.229 157 64 4 64 215 9 159 4.10e-45 161
Msa0577070 AT3G10480.3 40.741 216 82 5 60 239 23 228 1.51e-44 160
Msa0577070 AT3G49530.2 44.571 175 89 3 64 234 13 183 2.05e-44 157
Msa0577070 AT3G10500.1 49.045 157 73 3 64 217 9 161 4.28e-44 159
Msa0577070 AT3G49530.1 44.571 175 89 3 64 234 13 183 5.32e-44 157
Msa0577070 AT3G12910.1 48.315 178 76 7 59 222 17 192 2.80e-43 152
Msa0577070 AT1G34180.3 43.860 171 89 3 66 233 18 184 1.26e-42 153
Msa0577070 AT5G04410.1 47.771 157 75 3 64 217 9 161 1.76e-42 155
Msa0577070 AT2G17040.1 43.548 186 78 6 66 234 8 183 3.57e-42 148
Msa0577070 AT1G34180.1 43.860 171 89 3 66 233 18 184 7.31e-42 153
Msa0577070 AT1G34190.1 42.690 171 91 3 66 233 18 184 2.13e-40 149
Msa0577070 AT1G34180.4 41.530 183 88 3 66 233 18 196 2.58e-40 147
Msa0577070 AT5G09330.5 44.720 161 82 4 60 217 2 158 3.96e-40 147
Msa0577070 AT5G09330.2 44.720 161 82 4 60 217 2 158 3.96e-40 147
Msa0577070 AT5G09330.4 44.720 161 82 4 60 217 2 158 3.96e-40 147
Msa0577070 AT5G09330.3 44.720 161 82 4 60 217 2 158 3.96e-40 147
Msa0577070 AT5G09330.1 44.720 161 82 4 60 217 2 158 3.96e-40 147
Msa0577070 AT3G44290.2 33.898 236 125 7 66 296 16 225 8.32e-40 140
Msa0577070 AT1G34180.2 41.530 183 88 3 66 233 18 196 1.22e-39 147
Msa0577070 AT2G27300.1 45.033 151 70 3 64 212 14 153 7.54e-39 141
Msa0577070 AT5G64060.1 40.678 177 98 4 60 233 2 174 1.66e-38 140
Msa0577070 AT3G44290.1 34.061 229 120 7 66 289 16 218 1.99e-38 140
Msa0577070 AT5G22290.1 42.857 154 74 4 66 216 23 165 1.43e-37 137
Msa0577070 AT1G32870.3 47.977 173 77 6 50 217 34 198 3.66e-37 140
Msa0577070 AT1G32870.2 50.314 159 68 5 64 217 10 162 6.98e-37 139
Msa0577070 AT1G32870.1 50.314 159 68 5 64 217 10 162 8.76e-37 139
Msa0577070 AT5G61430.2 55.856 111 46 2 112 221 1 109 2.11e-34 127
Msa0577070 AT1G56010.1 50.000 126 57 3 112 234 1 123 2.84e-33 124
Msa0577070 AT5G22380.1 34.538 249 126 11 61 294 2 228 9.70e-33 122
Msa0577070 AT5G64530.1 39.205 176 82 4 62 224 1 164 3.02e-32 119
Msa0577070 AT3G44350.2 38.983 177 87 8 63 227 4 171 5.62e-32 120
Msa0577070 AT2G33480.3 56.436 101 39 3 117 216 8 104 1.30e-31 118
Msa0577070 AT5G04395.1 40.268 149 72 3 64 195 28 176 4.39e-31 116
Msa0577070 AT3G12977.2 50.926 108 49 2 109 215 10 114 6.64e-31 117
Msa0577070 AT4G10350.2 50.000 116 53 2 117 231 18 129 1.73e-30 117
Msa0577070 AT3G44350.1 38.509 161 79 6 63 208 4 159 2.22e-30 114
Msa0577070 AT5G64530.2 45.385 130 56 3 62 188 1 118 1.01e-29 112
Msa0577070 AT4G28530.2 37.059 170 47 3 63 215 9 135 1.36e-28 113
Msa0577070 AT4G01550.1 40.769 130 70 3 67 189 7 136 5.50e-26 108
Msa0577070 AT4G01520.1 35.227 176 97 5 65 232 5 171 5.72e-26 105
Msa0577070 AT4G01540.4 32.984 191 108 6 67 246 7 188 4.93e-25 104
Msa0577070 AT4G01540.3 32.984 191 108 6 67 246 7 188 5.98e-25 105
Msa0577070 AT4G01540.2 35.057 174 96 5 67 232 7 171 7.48e-25 104
Msa0577070 AT4G01540.1 35.057 174 96 5 67 232 7 171 8.47e-25 105
Msa0577070 AT3G04420.2 40.769 130 72 3 62 186 1 130 3.20e-23 98.2
Msa0577070 AT3G04420.1 40.769 130 72 3 62 186 1 130 6.80e-23 98.2
Msa0577070 AT1G02230.1 36.296 135 75 4 65 191 4 135 2.80e-22 96.7
Msa0577070 AT2G43000.2 47.253 91 44 2 126 215 2 89 7.54e-22 92.0
Msa0577070 AT5G14000.2 36.000 150 91 3 58 204 9 156 4.45e-21 89.0
Msa0577070 AT5G14000.1 33.742 163 96 4 58 217 9 162 1.13e-20 89.0
Msa0577070 AT3G10490.4 45.192 104 46 3 137 239 2 95 3.17e-20 90.5
Msa0577070 AT3G10490.3 45.192 104 46 3 137 239 2 95 3.17e-20 90.5
Msa0577070 AT1G02220.1 33.333 165 93 5 62 221 1 153 5.47e-20 90.5
Msa0577070 AT3G56530.1 34.395 157 87 6 64 213 52 199 5.56e-20 89.4
Msa0577070 AT1G02250.1 38.462 130 69 4 65 186 4 130 1.45e-19 89.0
Msa0577070 AT1G01010.1 34.532 139 74 5 62 186 1 136 6.69e-17 81.6
Msa0577070 AT2G18060.2 46.753 77 34 2 142 217 2 72 2.31e-15 75.9
Msa0577070 AT5G50820.1 34.074 135 72 6 61 188 14 138 1.41e-13 68.9
Msa0577070 AT5G22290.2 42.105 76 31 3 143 216 2 66 2.73e-11 63.2
Msa0577070 AT4G29230.1 33.333 153 72 8 64 189 48 197 6.95e-11 63.5
Msa0577070 AT4G29230.2 33.333 153 72 8 64 189 47 196 7.13e-11 63.5
Msa0577070 AT4G29230.3 33.117 154 73 8 64 190 48 198 8.52e-11 63.2

Find 124 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTAGGGTTTGTTGAATT+TGG 0.180719 4_1:-81229215 Msa0577070:three_prime_UTR
ATTCAATTAGGCATGTTATT+AGG 0.189563 4_1:-81229085 Msa0577070:three_prime_UTR
TTCAATTAGGCATGTTATTA+GGG 0.195640 4_1:-81229084 Msa0577070:three_prime_UTR
AAATCAATTTCTTTGATAAT+AGG 0.219498 4_1:+81230393 None:intergenic
AATGACCATTTGGGAGGATT+AGG 0.250459 4_1:-81229378 Msa0577070:three_prime_UTR
TGAAAATCAAAGGCTGAAAC+TGG 0.273975 4_1:+81229573 None:intergenic
GGGCTGCGGGAACCGGATAT+TGG 0.287906 4_1:-81230169 Msa0577070:CDS
TACTAGGGTTTGTTGAATTT+GGG 0.300795 4_1:-81229214 Msa0577070:three_prime_UTR
TTGATAATAGGAACAGCTAT+AGG 0.303758 4_1:+81230405 None:intergenic
GAAAATTGAAAATGACCATT+TGG 0.304176 4_1:-81229388 Msa0577070:three_prime_UTR
GGCATGTTATTAGGGGTATA+TGG 0.340002 4_1:-81229076 Msa0577070:three_prime_UTR
TTCTTTATCCCAAGTGCCTT+CGG 0.348007 4_1:+81230113 None:intergenic
TTTACAGAAATGGCTCTTTA+CGG 0.351320 4_1:-81230257 Msa0577070:intron
TTTGATCCATGGCATCTTCC+AGG 0.357407 4_1:-81230363 Msa0577070:intron
AATAACAAATTAAATTTACT+TGG 0.360188 4_1:+81229449 None:intergenic
TAATGGTGCATGTGTGATCT+TGG 0.361817 4_1:-81229246 Msa0577070:three_prime_UTR
AACCCGAAAATTGATTCATT+TGG 0.363530 4_1:+81229496 None:intergenic
AAAATTGAAAATGACCATTT+GGG 0.367814 4_1:-81229387 Msa0577070:three_prime_UTR
AAGTGGAATGAATTTGTATT+GGG 0.373773 4_1:-81229603 Msa0577070:CDS
TTCTACTCAAATAATAGAAA+TGG 0.386280 4_1:+81229003 None:intergenic
ATTAATTGCAGCTTGATGAT+TGG 0.388930 4_1:-81229878 Msa0577070:intron
CCGAACCGGGCTGCGGGAAC+CGG 0.391909 4_1:-81230176 Msa0577070:CDS
AGTGTTACTGTTAACATGTA+AGG 0.392554 4_1:-81229048 Msa0577070:three_prime_UTR
AGGATTAGGGATCCTAAAAT+TGG 0.395578 4_1:-81229364 Msa0577070:three_prime_UTR
ATGACCATTTGGGAGGATTA+GGG 0.396512 4_1:-81229377 Msa0577070:three_prime_UTR
CCAAAGGAATTAAAACCAAT+TGG 0.402035 4_1:-81230061 Msa0577070:CDS
CGGTTCGGCCTTGAACCGTT+TGG 0.403070 4_1:+81230191 None:intergenic
CCGGTTCCCGCAGCCCGGTT+CGG 0.410215 4_1:+81230176 None:intergenic
ATCTTGGGTAGGTGATTACT+AGG 0.410271 4_1:-81229230 Msa0577070:three_prime_UTR
TCAAAGGCTGAAACTGGGTC+TGG 0.410879 4_1:+81229579 None:intergenic
TGAGTTCGAAGTTGTGAGAA+AGG 0.411148 4_1:+81230642 None:intergenic
AGTTGCAGTTAGTATTTGTT+TGG 0.411894 4_1:+81229283 None:intergenic
TTAATTGCAGCTTGATGATT+GGG 0.412168 4_1:-81229877 Msa0577070:intron
CAAGTGGAATGAATTTGTAT+TGG 0.415048 4_1:-81229604 Msa0577070:CDS
AGTGTTGGTTGGTGGCTGCT+AGG 0.418122 4_1:+81230591 None:intergenic
TGGTTGAAATTTAAGAAAAG+TGG 0.419169 4_1:-81229168 Msa0577070:three_prime_UTR
GTAAATATCCAAACGGTTCA+AGG 0.423042 4_1:-81230199 Msa0577070:CDS
TGTCGAATTTACAACAAGAA+AGG 0.430099 4_1:-81229849 Msa0577070:CDS
AACGAGGTGTAGATTCAATT+AGG 0.431824 4_1:-81229097 Msa0577070:three_prime_UTR
TCTTCTTCTTCAGTGTTGGT+TGG 0.434262 4_1:+81230580 None:intergenic
TACTGATCCTGAGGGGCAAA+AGG 0.435530 4_1:+81229519 None:intergenic
CAAATTAAATTTACTTGGGC+AGG 0.439187 4_1:+81229454 None:intergenic
CAAACGGTTCAAGGCCGAAC+CGG 0.440323 4_1:-81230190 Msa0577070:CDS
TTCAAGGCCGAACCGGGCTG+CGG 0.445265 4_1:-81230183 Msa0577070:CDS
CAATACAAATTCATTCCACT+TGG 0.450741 4_1:+81229605 None:intergenic
TGATAATAGGAACAGCTATA+GGG 0.457703 4_1:+81230406 None:intergenic
GCAGTTAGTATTTGTTTGGT+AGG 0.465487 4_1:+81229287 None:intergenic
TCTTCTTCAGTGTTGGTTGG+TGG 0.470870 4_1:+81230583 None:intergenic
GGTTGAAATTTAAGAAAAGT+GGG 0.472430 4_1:-81229167 Msa0577070:three_prime_UTR
TTTGGATATTTACGATCCCT+TGG 0.476106 4_1:+81230209 None:intergenic
ACTACAAGTGGAGCTTCTAA+TGG 0.476462 4_1:-81229263 Msa0577070:three_prime_UTR
TCCGGTCGCCTTCCAATATC+CGG 0.478603 4_1:+81230157 None:intergenic
TCAAGGCCGAACCGGGCTGC+GGG 0.480914 4_1:-81230182 Msa0577070:CDS
TCCAATCGGCTTATCAGCTC+CGG 0.481369 4_1:+81230139 None:intergenic
CGTGGTTTCACCGTGCGATA+AGG 0.482787 4_1:-81229643 Msa0577070:CDS
ATAGAAATAGGTCATGATCA+TGG 0.484290 4_1:-81229416 Msa0577070:three_prime_UTR
TAGAAATAGGTCATGATCAT+GGG 0.484599 4_1:-81229415 Msa0577070:three_prime_UTR
CAGTTGAATCTTATGGATGA+TGG 0.485236 4_1:-81229552 Msa0577070:CDS
ATACTCATGCATGATCCAAT+TGG 0.485541 4_1:+81230046 None:intergenic
CAAAGGCTGAAACTGGGTCT+GGG 0.487541 4_1:+81229580 None:intergenic
ATTGGAAAGCCGAAGGCACT+TGG 0.488594 4_1:-81230122 Msa0577070:CDS
GTCGAATTTACAACAAGAAA+GGG 0.491222 4_1:-81229848 Msa0577070:CDS
CCTAAAATTGGAGGGTCCCA+TGG 0.493096 4_1:-81229352 Msa0577070:three_prime_UTR
CAACCAATTTAAAATATCCA+TGG 0.493535 4_1:+81229335 None:intergenic
TGTGAGAAAGGAAGAAGTTG+TGG 0.504684 4_1:+81230654 None:intergenic
GTGTTGGTTGGTGGCTGCTA+GGG 0.507815 4_1:+81230592 None:intergenic
AATGGTGCATGTGTGATCTT+GGG 0.510322 4_1:-81229245 Msa0577070:three_prime_UTR
TTCATTTGGTACTGATCCTG+AGG 0.513979 4_1:+81229510 None:intergenic
CACTATTCCTAAAATCATCC+TGG 0.521129 4_1:+81229733 None:intergenic
AATATCCGGTTCCCGCAGCC+CGG 0.524402 4_1:+81230171 None:intergenic
AGTGCCTTCGGCTTTCCAAT+CGG 0.524558 4_1:+81230125 None:intergenic
ATACTAACTGCAACTACAAG+TGG 0.527724 4_1:-81229275 Msa0577070:three_prime_UTR
ATTTGTATAAGTTTGATCCA+TGG 0.528456 4_1:-81230374 Msa0577070:CDS
AAACGGTTCAAGGCCGAACC+GGG 0.528831 4_1:-81230189 Msa0577070:CDS
GCTGCTAGGGTAGTTAGTAT+TGG 0.532321 4_1:+81230605 None:intergenic
TCAGATCAAGATGAACGGCC+AGG 0.532358 4_1:-81229751 Msa0577070:CDS
GTCGGGTGAAATCTGAAGCC+AGG 0.534952 4_1:+81230477 None:intergenic
GTACACTGACACATCAGATT+CGG 0.536856 4_1:-81229703 Msa0577070:CDS
TGGCCGTTCATCTTGATCTG+AGG 0.540560 4_1:+81229753 None:intergenic
ACCGGATATTGGAAGGCGAC+CGG 0.540712 4_1:-81230158 Msa0577070:CDS
GGATCCCTAATCCTCCCAAA+TGG 0.552239 4_1:+81229373 None:intergenic
TGCGGGAACCGGATATTGGA+AGG 0.555135 4_1:-81230165 Msa0577070:CDS
ATAACAAATTAAATTTACTT+GGG 0.555352 4_1:+81229450 None:intergenic
TGACAAGCTCATCATCAGTC+GGG 0.555923 4_1:+81230460 None:intergenic
ACCGGAGCTGATAAGCCGAT+TGG 0.556049 4_1:-81230140 Msa0577070:CDS
ACTGATCCTGAGGGGCAAAA+GGG 0.560321 4_1:+81229520 None:intergenic
AACCAATTTAAAATATCCAT+GGG 0.565157 4_1:+81229336 None:intergenic
ATGTACGTACTCTTAAATTG+TGG 0.565839 4_1:+81229985 None:intergenic
CTCTTTACGGTGAGAAAGAG+TGG 0.566657 4_1:-81230244 Msa0577070:CDS
AAGATTCAACTGAAAATCAA+AGG 0.566776 4_1:+81229563 None:intergenic
CTCAAGCGGTTCTGAGCACG+TGG 0.568997 4_1:-81229661 Msa0577070:CDS
ATTAGGGATCCTAAAATTGG+AGG 0.571106 4_1:-81229361 Msa0577070:three_prime_UTR
ATTGAATATACGCGAATGCA+AGG 0.577743 4_1:-81230516 Msa0577070:CDS
TAAGTACCTGGAAGATGCCA+TGG 0.577977 4_1:+81230357 None:intergenic
ATTGAAAATGACCATTTGGG+AGG 0.580131 4_1:-81229384 Msa0577070:three_prime_UTR
TCTTGGGTAGGTGATTACTA+GGG 0.581118 4_1:-81229229 Msa0577070:three_prime_UTR
CTTTGAACTTCCTTATCGCA+CGG 0.587532 4_1:+81229633 None:intergenic
AGGGATCGTAAATATCCAAA+CGG 0.593976 4_1:-81230206 Msa0577070:CDS
TTGACAAGCTCATCATCAGT+CGG 0.594991 4_1:+81230459 None:intergenic
GAAAATCAAAGGCTGAAACT+GGG 0.599958 4_1:+81229574 None:intergenic
AATACAAATTCATTCCACTT+GGG 0.602517 4_1:+81229606 None:intergenic
ACACATCAGATTCGGTGCCA+CGG 0.603238 4_1:-81229695 Msa0577070:CDS
TCATTTGGTACTGATCCTGA+GGG 0.603683 4_1:+81229511 None:intergenic
GTTGAAATTTAAGAAAAGTG+GGG 0.606864 4_1:-81229166 Msa0577070:three_prime_UTR
AAGTTCAAAGTGAGCCCAAG+TGG 0.609329 4_1:-81229620 Msa0577070:CDS
TTGGAAAGCCGAAGGCACTT+GGG 0.610579 4_1:-81230121 Msa0577070:CDS
CGGTTTCACACCGACTCAAG+CGG 0.614416 4_1:-81229675 Msa0577070:CDS
TTAGGGATCCTAAAATTGGA+GGG 0.619634 4_1:-81229360 Msa0577070:three_prime_UTR
GTGCTCAGAACCGCTTGAGT+CGG 0.630980 4_1:+81229665 None:intergenic
TCAATTAGGCATGTTATTAG+GGG 0.634767 4_1:-81229083 Msa0577070:three_prime_UTR
CTTGAGTCGGTGTGAAACCG+TGG 0.640274 4_1:+81229678 None:intergenic
AATAGGAACAGCTATAGGGA+GGG 0.642151 4_1:+81230410 None:intergenic
GGAGCATTAGAATTACCACC+TGG 0.643311 4_1:-81230495 Msa0577070:CDS
GCTTCCTCAGAAAACAGTGG+TGG 0.648220 4_1:+81229798 None:intergenic
TAATAGGAACAGCTATAGGG+AGG 0.649675 4_1:+81230409 None:intergenic
TATGCTGGCAAAGCTCCCAA+AGG 0.653423 4_1:-81230077 Msa0577070:CDS
AAACCTCAGATCAAGATGAA+CGG 0.656051 4_1:-81229756 Msa0577070:CDS
AGAAATAGGTCATGATCATG+GGG 0.658836 4_1:-81229414 Msa0577070:three_prime_UTR
GTGCATGTGTGATCTTGGGT+AGG 0.664061 4_1:-81229241 Msa0577070:three_prime_UTR
TAAGCCGATTGGAAAGCCGA+AGG 0.696583 4_1:-81230129 Msa0577070:CDS
TGAGCTTCCTCAGAAAACAG+TGG 0.712517 4_1:+81229795 None:intergenic
GGGTGAAATCTGAAGCCAGG+TGG 0.722817 4_1:+81230480 None:intergenic
AATGATCTCGATTCTCAACG+AGG 0.729907 4_1:-81229113 Msa0577070:three_prime_UTR
CATTTGGTACTGATCCTGAG+GGG 0.747553 4_1:+81229512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAAATTAAATTTACTT+GGG + chr4_1:81230222-81230241 None:intergenic 10.0%
!! AATAACAAATTAAATTTACT+TGG + chr4_1:81230223-81230242 None:intergenic 10.0%
!! ATAACAAATTAAATTTACTT+GGG + chr4_1:81230222-81230241 None:intergenic 10.0%
!! AATAACAAATTAAATTTACT+TGG + chr4_1:81230223-81230242 None:intergenic 10.0%
!!! AAATCAATTTCTTTGATAAT+AGG + chr4_1:81229279-81229298 None:intergenic 15.0%
!! ATAAAATAAAAGAATTGGTT+TGG + chr4_1:81229714-81229733 None:intergenic 15.0%
!!! ATATTGATTTTTCATTAGTA+TGG - chr4_1:81230481-81230500 Msa0577070:CDS 15.0%
!!! AAATCAATTTCTTTGATAAT+AGG + chr4_1:81229279-81229298 None:intergenic 15.0%
!! ATAAAATAAAAGAATTGGTT+TGG + chr4_1:81229714-81229733 None:intergenic 15.0%
!!! ATATTGATTTTTCATTAGTA+TGG - chr4_1:81230481-81230500 Msa0577070:CDS 15.0%
!!! TTTTCGTTAGTAATAGAAAT+AGG - chr4_1:81230241-81230260 Msa0577070:CDS 20.0%
!! AAAATTGAAAATGACCATTT+GGG - chr4_1:81230282-81230301 Msa0577070:intron 20.0%
!!! AACCAATTTAAAATATCCAT+GGG + chr4_1:81230336-81230355 None:intergenic 20.0%
!! TTCTACTCAAATAATAGAAA+TGG + chr4_1:81230669-81230688 None:intergenic 20.0%
!!! TTTTCGTTAGTAATAGAAAT+AGG - chr4_1:81230241-81230260 Msa0577070:CDS 20.0%
!! AAAATTGAAAATGACCATTT+GGG - chr4_1:81230282-81230301 Msa0577070:intron 20.0%
!!! AACCAATTTAAAATATCCAT+GGG + chr4_1:81230336-81230355 None:intergenic 20.0%
!! TTCTACTCAAATAATAGAAA+TGG + chr4_1:81230669-81230688 None:intergenic 20.0%
! ATTTGTATAAGTTTGATCCA+TGG - chr4_1:81229295-81229314 Msa0577070:three_prime_UTR 25.0%
! GTTGTATGTATTTACAGAAA+TGG - chr4_1:81229402-81229421 Msa0577070:three_prime_UTR 25.0%
!!! CAATTGGTTTTAATTCCTTT+GGG + chr4_1:81229610-81229629 None:intergenic 25.0%
!!! ATTGTGGTTATTTTTTGAAG+CGG + chr4_1:81229671-81229690 None:intergenic 25.0%
!!! AAATAAAAGAATTGGTTTGG+TGG + chr4_1:81229711-81229730 None:intergenic 25.0%
! AATACAAATTCATTCCACTT+GGG + chr4_1:81230066-81230085 None:intergenic 25.0%
! AAGTGGAATGAATTTGTATT+GGG - chr4_1:81230066-81230085 Msa0577070:CDS 25.0%
! AAGATTCAACTGAAAATCAA+AGG + chr4_1:81230109-81230128 None:intergenic 25.0%
!! TGATTTTCAGTTGAATCTTA+TGG - chr4_1:81230110-81230129 Msa0577070:CDS 25.0%
!! GTACCAAATGAATCAATTTT+CGG - chr4_1:81230170-81230189 Msa0577070:CDS 25.0%
!! TACCAAATGAATCAATTTTC+GGG - chr4_1:81230171-81230190 Msa0577070:CDS 25.0%
! GAAAATTGAAAATGACCATT+TGG - chr4_1:81230281-81230300 Msa0577070:intron 25.0%
!! CAACCAATTTAAAATATCCA+TGG + chr4_1:81230337-81230356 None:intergenic 25.0%
! TGGTTGAAATTTAAGAAAAG+TGG - chr4_1:81230501-81230520 Msa0577070:CDS 25.0%
! GGTTGAAATTTAAGAAAAGT+GGG - chr4_1:81230502-81230521 Msa0577070:CDS 25.0%
! GTTGAAATTTAAGAAAAGTG+GGG - chr4_1:81230503-81230522 Msa0577070:CDS 25.0%
! ATTCAATTAGGCATGTTATT+AGG - chr4_1:81230584-81230603 Msa0577070:CDS 25.0%
! TTCAATTAGGCATGTTATTA+GGG - chr4_1:81230585-81230604 Msa0577070:CDS 25.0%
! ATTTGTATAAGTTTGATCCA+TGG - chr4_1:81229295-81229314 Msa0577070:three_prime_UTR 25.0%
! GTTGTATGTATTTACAGAAA+TGG - chr4_1:81229402-81229421 Msa0577070:three_prime_UTR 25.0%
!!! CAATTGGTTTTAATTCCTTT+GGG + chr4_1:81229610-81229629 None:intergenic 25.0%
!!! ATTGTGGTTATTTTTTGAAG+CGG + chr4_1:81229671-81229690 None:intergenic 25.0%
!!! AAATAAAAGAATTGGTTTGG+TGG + chr4_1:81229711-81229730 None:intergenic 25.0%
! AATACAAATTCATTCCACTT+GGG + chr4_1:81230066-81230085 None:intergenic 25.0%
! AAGTGGAATGAATTTGTATT+GGG - chr4_1:81230066-81230085 Msa0577070:CDS 25.0%
! AAGATTCAACTGAAAATCAA+AGG + chr4_1:81230109-81230128 None:intergenic 25.0%
!! TGATTTTCAGTTGAATCTTA+TGG - chr4_1:81230110-81230129 Msa0577070:CDS 25.0%
!! GTACCAAATGAATCAATTTT+CGG - chr4_1:81230170-81230189 Msa0577070:CDS 25.0%
!! TACCAAATGAATCAATTTTC+GGG - chr4_1:81230171-81230190 Msa0577070:CDS 25.0%
! GAAAATTGAAAATGACCATT+TGG - chr4_1:81230281-81230300 Msa0577070:intron 25.0%
!! CAACCAATTTAAAATATCCA+TGG + chr4_1:81230337-81230356 None:intergenic 25.0%
! TGGTTGAAATTTAAGAAAAG+TGG - chr4_1:81230501-81230520 Msa0577070:CDS 25.0%
! GGTTGAAATTTAAGAAAAGT+GGG - chr4_1:81230502-81230521 Msa0577070:CDS 25.0%
! GTTGAAATTTAAGAAAAGTG+GGG - chr4_1:81230503-81230522 Msa0577070:CDS 25.0%
! ATTCAATTAGGCATGTTATT+AGG - chr4_1:81230584-81230603 Msa0577070:CDS 25.0%
! TTCAATTAGGCATGTTATTA+GGG - chr4_1:81230585-81230604 Msa0577070:CDS 25.0%
!!! AAGAAGTTGTGGTTTTATAG+GGG + chr4_1:81229007-81229026 None:intergenic 30.0%
!!! GAAGAAGTTGTGGTTTTATA+GGG + chr4_1:81229008-81229027 None:intergenic 30.0%
TGATAATAGGAACAGCTATA+GGG + chr4_1:81229266-81229285 None:intergenic 30.0%
! TTGATAATAGGAACAGCTAT+AGG + chr4_1:81229267-81229286 None:intergenic 30.0%
GAAAATAAAGAGTAAGTACC+TGG + chr4_1:81229327-81229346 None:intergenic 30.0%
TTTACAGAAATGGCTCTTTA+CGG - chr4_1:81229412-81229431 Msa0577070:three_prime_UTR 30.0%
!!! CCAATTGGTTTTAATTCCTT+TGG + chr4_1:81229611-81229630 None:intergenic 30.0%
CCAAAGGAATTAAAACCAAT+TGG - chr4_1:81229608-81229627 Msa0577070:CDS 30.0%
ATGTACGTACTCTTAAATTG+TGG + chr4_1:81229687-81229706 None:intergenic 30.0%
! ATTAATTGCAGCTTGATGAT+TGG - chr4_1:81229791-81229810 Msa0577070:CDS 30.0%
! TTAATTGCAGCTTGATGATT+GGG - chr4_1:81229792-81229811 Msa0577070:CDS 30.0%
TGTCGAATTTACAACAAGAA+AGG - chr4_1:81229820-81229839 Msa0577070:CDS 30.0%
GTCGAATTTACAACAAGAAA+GGG - chr4_1:81229821-81229840 Msa0577070:CDS 30.0%
CAATACAAATTCATTCCACT+TGG + chr4_1:81230067-81230086 None:intergenic 30.0%
CAAGTGGAATGAATTTGTAT+TGG - chr4_1:81230065-81230084 Msa0577070:CDS 30.0%
! AACCCGAAAATTGATTCATT+TGG + chr4_1:81230176-81230195 None:intergenic 30.0%
!!! AAATGAATCAATTTTCGGGT+TGG - chr4_1:81230175-81230194 Msa0577070:CDS 30.0%
CAAATTAAATTTACTTGGGC+AGG + chr4_1:81230218-81230237 None:intergenic 30.0%
ATAGAAATAGGTCATGATCA+TGG - chr4_1:81230253-81230272 Msa0577070:CDS 30.0%
TAGAAATAGGTCATGATCAT+GGG - chr4_1:81230254-81230273 Msa0577070:intron 30.0%
!! GTCCCATGGATATTTTAAAT+TGG - chr4_1:81230331-81230350 Msa0577070:intron 30.0%
AGTTGCAGTTAGTATTTGTT+TGG + chr4_1:81230389-81230408 None:intergenic 30.0%
!! TTACTAGGGTTTGTTGAATT+TGG - chr4_1:81230454-81230473 Msa0577070:CDS 30.0%
!! TACTAGGGTTTGTTGAATTT+GGG - chr4_1:81230455-81230474 Msa0577070:CDS 30.0%
TCAATTAGGCATGTTATTAG+GGG - chr4_1:81230586-81230605 Msa0577070:CDS 30.0%
! AGTGTTACTGTTAACATGTA+AGG - chr4_1:81230621-81230640 Msa0577070:CDS 30.0%
!!! AAGAAGTTGTGGTTTTATAG+GGG + chr4_1:81229007-81229026 None:intergenic 30.0%
!!! GAAGAAGTTGTGGTTTTATA+GGG + chr4_1:81229008-81229027 None:intergenic 30.0%
TGATAATAGGAACAGCTATA+GGG + chr4_1:81229266-81229285 None:intergenic 30.0%
! TTGATAATAGGAACAGCTAT+AGG + chr4_1:81229267-81229286 None:intergenic 30.0%
GAAAATAAAGAGTAAGTACC+TGG + chr4_1:81229327-81229346 None:intergenic 30.0%
TTTACAGAAATGGCTCTTTA+CGG - chr4_1:81229412-81229431 Msa0577070:three_prime_UTR 30.0%
!!! CCAATTGGTTTTAATTCCTT+TGG + chr4_1:81229611-81229630 None:intergenic 30.0%
CCAAAGGAATTAAAACCAAT+TGG - chr4_1:81229608-81229627 Msa0577070:CDS 30.0%
ATGTACGTACTCTTAAATTG+TGG + chr4_1:81229687-81229706 None:intergenic 30.0%
! ATTAATTGCAGCTTGATGAT+TGG - chr4_1:81229791-81229810 Msa0577070:CDS 30.0%
! TTAATTGCAGCTTGATGATT+GGG - chr4_1:81229792-81229811 Msa0577070:CDS 30.0%
TGTCGAATTTACAACAAGAA+AGG - chr4_1:81229820-81229839 Msa0577070:CDS 30.0%
GTCGAATTTACAACAAGAAA+GGG - chr4_1:81229821-81229840 Msa0577070:CDS 30.0%
CAATACAAATTCATTCCACT+TGG + chr4_1:81230067-81230086 None:intergenic 30.0%
CAAGTGGAATGAATTTGTAT+TGG - chr4_1:81230065-81230084 Msa0577070:CDS 30.0%
! AACCCGAAAATTGATTCATT+TGG + chr4_1:81230176-81230195 None:intergenic 30.0%
!!! AAATGAATCAATTTTCGGGT+TGG - chr4_1:81230175-81230194 Msa0577070:CDS 30.0%
CAAATTAAATTTACTTGGGC+AGG + chr4_1:81230218-81230237 None:intergenic 30.0%
ATAGAAATAGGTCATGATCA+TGG - chr4_1:81230253-81230272 Msa0577070:CDS 30.0%
TAGAAATAGGTCATGATCAT+GGG - chr4_1:81230254-81230273 Msa0577070:intron 30.0%
!! GTCCCATGGATATTTTAAAT+TGG - chr4_1:81230331-81230350 Msa0577070:intron 30.0%
AGTTGCAGTTAGTATTTGTT+TGG + chr4_1:81230389-81230408 None:intergenic 30.0%
!! TTACTAGGGTTTGTTGAATT+TGG - chr4_1:81230454-81230473 Msa0577070:CDS 30.0%
!! TACTAGGGTTTGTTGAATTT+GGG - chr4_1:81230455-81230474 Msa0577070:CDS 30.0%
TCAATTAGGCATGTTATTAG+GGG - chr4_1:81230586-81230605 Msa0577070:CDS 30.0%
! AGTGTTACTGTTAACATGTA+AGG - chr4_1:81230621-81230640 Msa0577070:CDS 30.0%
!!! GGAAGAAGTTGTGGTTTTAT+AGG + chr4_1:81229009-81229028 None:intergenic 35.0%
TTCTTCTTCTTCTTCAGTGT+TGG + chr4_1:81229096-81229115 None:intergenic 35.0%
ATTGAATATACGCGAATGCA+AGG - chr4_1:81229153-81229172 Msa0577070:three_prime_UTR 35.0%
!!! AGTGGTATTTTTTCTCTCCA+AGG - chr4_1:81229443-81229462 Msa0577070:three_prime_UTR 35.0%
!!! GTGGTATTTTTTCTCTCCAA+GGG - chr4_1:81229444-81229463 Msa0577070:three_prime_UTR 35.0%
TTTGGATATTTACGATCCCT+TGG + chr4_1:81229463-81229482 None:intergenic 35.0%
AGGGATCGTAAATATCCAAA+CGG - chr4_1:81229463-81229482 Msa0577070:exon 35.0%
GTAAATATCCAAACGGTTCA+AGG - chr4_1:81229470-81229489 Msa0577070:CDS 35.0%
!! AAAGCACTTGTTTTCTATGC+TGG - chr4_1:81229577-81229596 Msa0577070:CDS 35.0%
ATACTCATGCATGATCCAAT+TGG + chr4_1:81229626-81229645 None:intergenic 35.0%
AAACCTCAGATCAAGATGAA+CGG - chr4_1:81229913-81229932 Msa0577070:intron 35.0%
CACTATTCCTAAAATCATCC+TGG + chr4_1:81229939-81229958 None:intergenic 35.0%
GAAAATCAAAGGCTGAAACT+GGG + chr4_1:81230098-81230117 None:intergenic 35.0%
TGAAAATCAAAGGCTGAAAC+TGG + chr4_1:81230099-81230118 None:intergenic 35.0%
CAGTTGAATCTTATGGATGA+TGG - chr4_1:81230117-81230136 Msa0577070:CDS 35.0%
AGAAATAGGTCATGATCATG+GGG - chr4_1:81230255-81230274 Msa0577070:intron 35.0%
ATTGAAAATGACCATTTGGG+AGG - chr4_1:81230285-81230304 Msa0577070:intron 35.0%
AGGATTAGGGATCCTAAAAT+TGG - chr4_1:81230305-81230324 Msa0577070:intron 35.0%
ATTAGGGATCCTAAAATTGG+AGG - chr4_1:81230308-81230327 Msa0577070:intron 35.0%
TTAGGGATCCTAAAATTGGA+GGG - chr4_1:81230309-81230328 Msa0577070:intron 35.0%
GCAGTTAGTATTTGTTTGGT+AGG + chr4_1:81230385-81230404 None:intergenic 35.0%
ATACTAACTGCAACTACAAG+TGG - chr4_1:81230394-81230413 Msa0577070:CDS 35.0%
AACGAGGTGTAGATTCAATT+AGG - chr4_1:81230572-81230591 Msa0577070:CDS 35.0%
!!! GGAAGAAGTTGTGGTTTTAT+AGG + chr4_1:81229009-81229028 None:intergenic 35.0%
TTCTTCTTCTTCTTCAGTGT+TGG + chr4_1:81229096-81229115 None:intergenic 35.0%
ATTGAATATACGCGAATGCA+AGG - chr4_1:81229153-81229172 Msa0577070:three_prime_UTR 35.0%
!!! AGTGGTATTTTTTCTCTCCA+AGG - chr4_1:81229443-81229462 Msa0577070:three_prime_UTR 35.0%
!!! GTGGTATTTTTTCTCTCCAA+GGG - chr4_1:81229444-81229463 Msa0577070:three_prime_UTR 35.0%
TTTGGATATTTACGATCCCT+TGG + chr4_1:81229463-81229482 None:intergenic 35.0%
AGGGATCGTAAATATCCAAA+CGG - chr4_1:81229463-81229482 Msa0577070:exon 35.0%
GTAAATATCCAAACGGTTCA+AGG - chr4_1:81229470-81229489 Msa0577070:CDS 35.0%
!! AAAGCACTTGTTTTCTATGC+TGG - chr4_1:81229577-81229596 Msa0577070:CDS 35.0%
ATACTCATGCATGATCCAAT+TGG + chr4_1:81229626-81229645 None:intergenic 35.0%
AAACCTCAGATCAAGATGAA+CGG - chr4_1:81229913-81229932 Msa0577070:intron 35.0%
CACTATTCCTAAAATCATCC+TGG + chr4_1:81229939-81229958 None:intergenic 35.0%
GAAAATCAAAGGCTGAAACT+GGG + chr4_1:81230098-81230117 None:intergenic 35.0%
TGAAAATCAAAGGCTGAAAC+TGG + chr4_1:81230099-81230118 None:intergenic 35.0%
CAGTTGAATCTTATGGATGA+TGG - chr4_1:81230117-81230136 Msa0577070:CDS 35.0%
AGAAATAGGTCATGATCATG+GGG - chr4_1:81230255-81230274 Msa0577070:intron 35.0%
ATTGAAAATGACCATTTGGG+AGG - chr4_1:81230285-81230304 Msa0577070:intron 35.0%
AGGATTAGGGATCCTAAAAT+TGG - chr4_1:81230305-81230324 Msa0577070:intron 35.0%
ATTAGGGATCCTAAAATTGG+AGG - chr4_1:81230308-81230327 Msa0577070:intron 35.0%
TTAGGGATCCTAAAATTGGA+GGG - chr4_1:81230309-81230328 Msa0577070:intron 35.0%
GCAGTTAGTATTTGTTTGGT+AGG + chr4_1:81230385-81230404 None:intergenic 35.0%
ATACTAACTGCAACTACAAG+TGG - chr4_1:81230394-81230413 Msa0577070:CDS 35.0%
AACGAGGTGTAGATTCAATT+AGG - chr4_1:81230572-81230591 Msa0577070:CDS 35.0%
!!! GTTGTGGTTTTATAGGGGAT+AGG + chr4_1:81229002-81229021 None:intergenic 40.0%
TGTGAGAAAGGAAGAAGTTG+TGG + chr4_1:81229018-81229037 None:intergenic 40.0%
TGAGTTCGAAGTTGTGAGAA+AGG + chr4_1:81229030-81229049 None:intergenic 40.0%
!! TCTTCTTCTTCAGTGTTGGT+TGG + chr4_1:81229092-81229111 None:intergenic 40.0%
TTGACAAGCTCATCATCAGT+CGG + chr4_1:81229213-81229232 None:intergenic 40.0%
AATAGGAACAGCTATAGGGA+GGG + chr4_1:81229262-81229281 None:intergenic 40.0%
TAATAGGAACAGCTATAGGG+AGG + chr4_1:81229263-81229282 None:intergenic 40.0%
TTCTTTATCCCAAGTGCCTT+CGG + chr4_1:81229559-81229578 None:intergenic 40.0%
! TAAACCACCACTGTTTTCTG+AGG - chr4_1:81229867-81229886 Msa0577070:CDS 40.0%
GTACACTGACACATCAGATT+CGG - chr4_1:81229966-81229985 Msa0577070:intron 40.0%
CTTTGAACTTCCTTATCGCA+CGG + chr4_1:81230039-81230058 None:intergenic 40.0%
!! TCATTTGGTACTGATCCTGA+GGG + chr4_1:81230161-81230180 None:intergenic 40.0%
!! TTCATTTGGTACTGATCCTG+AGG + chr4_1:81230162-81230181 None:intergenic 40.0%
AATGACCATTTGGGAGGATT+AGG - chr4_1:81230291-81230310 Msa0577070:intron 40.0%
ATGACCATTTGGGAGGATTA+GGG - chr4_1:81230292-81230311 Msa0577070:intron 40.0%
ACTACAAGTGGAGCTTCTAA+TGG - chr4_1:81230406-81230425 Msa0577070:CDS 40.0%
TAATGGTGCATGTGTGATCT+TGG - chr4_1:81230423-81230442 Msa0577070:CDS 40.0%
AATGGTGCATGTGTGATCTT+GGG - chr4_1:81230424-81230443 Msa0577070:CDS 40.0%
ATCTTGGGTAGGTGATTACT+AGG - chr4_1:81230439-81230458 Msa0577070:CDS 40.0%
TCTTGGGTAGGTGATTACTA+GGG - chr4_1:81230440-81230459 Msa0577070:CDS 40.0%
AATGATCTCGATTCTCAACG+AGG - chr4_1:81230556-81230575 Msa0577070:CDS 40.0%
! GGCATGTTATTAGGGGTATA+TGG - chr4_1:81230593-81230612 Msa0577070:CDS 40.0%
!!! GTTGTGGTTTTATAGGGGAT+AGG + chr4_1:81229002-81229021 None:intergenic 40.0%
TGTGAGAAAGGAAGAAGTTG+TGG + chr4_1:81229018-81229037 None:intergenic 40.0%
TGAGTTCGAAGTTGTGAGAA+AGG + chr4_1:81229030-81229049 None:intergenic 40.0%
!! TCTTCTTCTTCAGTGTTGGT+TGG + chr4_1:81229092-81229111 None:intergenic 40.0%
TTGACAAGCTCATCATCAGT+CGG + chr4_1:81229213-81229232 None:intergenic 40.0%
AATAGGAACAGCTATAGGGA+GGG + chr4_1:81229262-81229281 None:intergenic 40.0%
TAATAGGAACAGCTATAGGG+AGG + chr4_1:81229263-81229282 None:intergenic 40.0%
TTCTTTATCCCAAGTGCCTT+CGG + chr4_1:81229559-81229578 None:intergenic 40.0%
! TAAACCACCACTGTTTTCTG+AGG - chr4_1:81229867-81229886 Msa0577070:CDS 40.0%
GTACACTGACACATCAGATT+CGG - chr4_1:81229966-81229985 Msa0577070:intron 40.0%
CTTTGAACTTCCTTATCGCA+CGG + chr4_1:81230039-81230058 None:intergenic 40.0%
!! TCATTTGGTACTGATCCTGA+GGG + chr4_1:81230161-81230180 None:intergenic 40.0%
!! TTCATTTGGTACTGATCCTG+AGG + chr4_1:81230162-81230181 None:intergenic 40.0%
AATGACCATTTGGGAGGATT+AGG - chr4_1:81230291-81230310 Msa0577070:intron 40.0%
ATGACCATTTGGGAGGATTA+GGG - chr4_1:81230292-81230311 Msa0577070:intron 40.0%
ACTACAAGTGGAGCTTCTAA+TGG - chr4_1:81230406-81230425 Msa0577070:CDS 40.0%
TAATGGTGCATGTGTGATCT+TGG - chr4_1:81230423-81230442 Msa0577070:CDS 40.0%
AATGGTGCATGTGTGATCTT+GGG - chr4_1:81230424-81230443 Msa0577070:CDS 40.0%
ATCTTGGGTAGGTGATTACT+AGG - chr4_1:81230439-81230458 Msa0577070:CDS 40.0%
TCTTGGGTAGGTGATTACTA+GGG - chr4_1:81230440-81230459 Msa0577070:CDS 40.0%
AATGATCTCGATTCTCAACG+AGG - chr4_1:81230556-81230575 Msa0577070:CDS 40.0%
! GGCATGTTATTAGGGGTATA+TGG - chr4_1:81230593-81230612 Msa0577070:CDS 40.0%
GCTGCTAGGGTAGTTAGTAT+TGG + chr4_1:81229067-81229086 None:intergenic 45.0%
!! TCTTCTTCAGTGTTGGTTGG+TGG + chr4_1:81229089-81229108 None:intergenic 45.0%
! GGAGCATTAGAATTACCACC+TGG - chr4_1:81229174-81229193 Msa0577070:three_prime_UTR 45.0%
TGACAAGCTCATCATCAGTC+GGG + chr4_1:81229212-81229231 None:intergenic 45.0%
TTTGATCCATGGCATCTTCC+AGG - chr4_1:81229306-81229325 Msa0577070:three_prime_UTR 45.0%
TAAGTACCTGGAAGATGCCA+TGG + chr4_1:81229315-81229334 None:intergenic 45.0%
CTCTTTACGGTGAGAAAGAG+TGG - chr4_1:81229425-81229444 Msa0577070:three_prime_UTR 45.0%
TGAGCTTCCTCAGAAAACAG+TGG + chr4_1:81229877-81229896 None:intergenic 45.0%
! TGAACGGCCAGGATGATTTT+AGG - chr4_1:81229929-81229948 Msa0577070:intron 45.0%
AAGTTCAAAGTGAGCCCAAG+TGG - chr4_1:81230049-81230068 Msa0577070:CDS 45.0%
!! CATTTGGTACTGATCCTGAG+GGG + chr4_1:81230160-81230179 None:intergenic 45.0%
GCTGCTAGGGTAGTTAGTAT+TGG + chr4_1:81229067-81229086 None:intergenic 45.0%
!! TCTTCTTCAGTGTTGGTTGG+TGG + chr4_1:81229089-81229108 None:intergenic 45.0%
! GGAGCATTAGAATTACCACC+TGG - chr4_1:81229174-81229193 Msa0577070:three_prime_UTR 45.0%
TGACAAGCTCATCATCAGTC+GGG + chr4_1:81229212-81229231 None:intergenic 45.0%
TTTGATCCATGGCATCTTCC+AGG - chr4_1:81229306-81229325 Msa0577070:three_prime_UTR 45.0%
TAAGTACCTGGAAGATGCCA+TGG + chr4_1:81229315-81229334 None:intergenic 45.0%
CTCTTTACGGTGAGAAAGAG+TGG - chr4_1:81229425-81229444 Msa0577070:three_prime_UTR 45.0%
TGAGCTTCCTCAGAAAACAG+TGG + chr4_1:81229877-81229896 None:intergenic 45.0%
! TGAACGGCCAGGATGATTTT+AGG - chr4_1:81229929-81229948 Msa0577070:intron 45.0%
AAGTTCAAAGTGAGCCCAAG+TGG - chr4_1:81230049-81230068 Msa0577070:CDS 45.0%
!! CATTTGGTACTGATCCTGAG+GGG + chr4_1:81230160-81230179 None:intergenic 45.0%
!! AAAAAATAAAATAAAAGAAT+TGG + chr4_1:81229719-81229738 None:intergenic 5.0%
!! AAAAAATAAAATAAAAGAAT+TGG + chr4_1:81229719-81229738 None:intergenic 5.0%
! TCCAATCGGCTTATCAGCTC+CGG + chr4_1:81229533-81229552 None:intergenic 50.0%
TAAGCCGATTGGAAAGCCGA+AGG - chr4_1:81229540-81229559 Msa0577070:CDS 50.0%
AGTGCCTTCGGCTTTCCAAT+CGG + chr4_1:81229547-81229566 None:intergenic 50.0%
!! ATTGGAAAGCCGAAGGCACT+TGG - chr4_1:81229547-81229566 Msa0577070:CDS 50.0%
!! TTGGAAAGCCGAAGGCACTT+GGG - chr4_1:81229548-81229567 Msa0577070:CDS 50.0%
TATGCTGGCAAAGCTCCCAA+AGG - chr4_1:81229592-81229611 Msa0577070:CDS 50.0%
GCTTCCTCAGAAAACAGTGG+TGG + chr4_1:81229874-81229893 None:intergenic 50.0%
TGGCCGTTCATCTTGATCTG+AGG + chr4_1:81229919-81229938 None:intergenic 50.0%
TCAGATCAAGATGAACGGCC+AGG - chr4_1:81229918-81229937 Msa0577070:intron 50.0%
!! ACACATCAGATTCGGTGCCA+CGG - chr4_1:81229974-81229993 Msa0577070:intron 50.0%
CAAAGGCTGAAACTGGGTCT+GGG + chr4_1:81230092-81230111 None:intergenic 50.0%
TCAAAGGCTGAAACTGGGTC+TGG + chr4_1:81230093-81230112 None:intergenic 50.0%
ACTGATCCTGAGGGGCAAAA+GGG + chr4_1:81230152-81230171 None:intergenic 50.0%
TACTGATCCTGAGGGGCAAA+AGG + chr4_1:81230153-81230172 None:intergenic 50.0%
GGATCCCTAATCCTCCCAAA+TGG + chr4_1:81230299-81230318 None:intergenic 50.0%
! CCATGGGACCCTCCAATTTT+AGG + chr4_1:81230320-81230339 None:intergenic 50.0%
CCTAAAATTGGAGGGTCCCA+TGG - chr4_1:81230317-81230336 Msa0577070:intron 50.0%
GTGCATGTGTGATCTTGGGT+AGG - chr4_1:81230428-81230447 Msa0577070:CDS 50.0%
! TCCAATCGGCTTATCAGCTC+CGG + chr4_1:81229533-81229552 None:intergenic 50.0%
TAAGCCGATTGGAAAGCCGA+AGG - chr4_1:81229540-81229559 Msa0577070:CDS 50.0%
AGTGCCTTCGGCTTTCCAAT+CGG + chr4_1:81229547-81229566 None:intergenic 50.0%
!! ATTGGAAAGCCGAAGGCACT+TGG - chr4_1:81229547-81229566 Msa0577070:CDS 50.0%
!! TTGGAAAGCCGAAGGCACTT+GGG - chr4_1:81229548-81229567 Msa0577070:CDS 50.0%
TATGCTGGCAAAGCTCCCAA+AGG - chr4_1:81229592-81229611 Msa0577070:CDS 50.0%
GCTTCCTCAGAAAACAGTGG+TGG + chr4_1:81229874-81229893 None:intergenic 50.0%
TGGCCGTTCATCTTGATCTG+AGG + chr4_1:81229919-81229938 None:intergenic 50.0%
TCAGATCAAGATGAACGGCC+AGG - chr4_1:81229918-81229937 Msa0577070:intron 50.0%
!! ACACATCAGATTCGGTGCCA+CGG - chr4_1:81229974-81229993 Msa0577070:intron 50.0%
CAAAGGCTGAAACTGGGTCT+GGG + chr4_1:81230092-81230111 None:intergenic 50.0%
TCAAAGGCTGAAACTGGGTC+TGG + chr4_1:81230093-81230112 None:intergenic 50.0%
ACTGATCCTGAGGGGCAAAA+GGG + chr4_1:81230152-81230171 None:intergenic 50.0%
TACTGATCCTGAGGGGCAAA+AGG + chr4_1:81230153-81230172 None:intergenic 50.0%
GGATCCCTAATCCTCCCAAA+TGG + chr4_1:81230299-81230318 None:intergenic 50.0%
! CCATGGGACCCTCCAATTTT+AGG + chr4_1:81230320-81230339 None:intergenic 50.0%
CCTAAAATTGGAGGGTCCCA+TGG - chr4_1:81230317-81230336 Msa0577070:intron 50.0%
GTGCATGTGTGATCTTGGGT+AGG - chr4_1:81230428-81230447 Msa0577070:CDS 50.0%
!! GTGTTGGTTGGTGGCTGCTA+GGG + chr4_1:81229080-81229099 None:intergenic 55.0%
!! AGTGTTGGTTGGTGGCTGCT+AGG + chr4_1:81229081-81229100 None:intergenic 55.0%
! GGGTGAAATCTGAAGCCAGG+TGG + chr4_1:81229192-81229211 None:intergenic 55.0%
! GTCGGGTGAAATCTGAAGCC+AGG + chr4_1:81229195-81229214 None:intergenic 55.0%
CAAACGGTTCAAGGCCGAAC+CGG - chr4_1:81229479-81229498 Msa0577070:CDS 55.0%
AAACGGTTCAAGGCCGAACC+GGG - chr4_1:81229480-81229499 Msa0577070:CDS 55.0%
TGCGGGAACCGGATATTGGA+AGG - chr4_1:81229504-81229523 Msa0577070:CDS 55.0%
ACCGGATATTGGAAGGCGAC+CGG - chr4_1:81229511-81229530 Msa0577070:CDS 55.0%
TCCGGTCGCCTTCCAATATC+CGG + chr4_1:81229515-81229534 None:intergenic 55.0%
ACCGGAGCTGATAAGCCGAT+TGG - chr4_1:81229529-81229548 Msa0577070:CDS 55.0%
CTTGAGTCGGTGTGAAACCG+TGG + chr4_1:81229994-81230013 None:intergenic 55.0%
!! CGGTTTCACACCGACTCAAG+CGG - chr4_1:81229994-81230013 Msa0577070:intron 55.0%
GTGCTCAGAACCGCTTGAGT+CGG + chr4_1:81230007-81230026 None:intergenic 55.0%
CGTGGTTTCACCGTGCGATA+AGG - chr4_1:81230026-81230045 Msa0577070:CDS 55.0%
! AGATGACCCTTTTGCCCCTC+AGG - chr4_1:81230143-81230162 Msa0577070:CDS 55.0%
!! GTGTTGGTTGGTGGCTGCTA+GGG + chr4_1:81229080-81229099 None:intergenic 55.0%
!! AGTGTTGGTTGGTGGCTGCT+AGG + chr4_1:81229081-81229100 None:intergenic 55.0%
! GGGTGAAATCTGAAGCCAGG+TGG + chr4_1:81229192-81229211 None:intergenic 55.0%
! GTCGGGTGAAATCTGAAGCC+AGG + chr4_1:81229195-81229214 None:intergenic 55.0%
CAAACGGTTCAAGGCCGAAC+CGG - chr4_1:81229479-81229498 Msa0577070:CDS 55.0%
AAACGGTTCAAGGCCGAACC+GGG - chr4_1:81229480-81229499 Msa0577070:CDS 55.0%
TGCGGGAACCGGATATTGGA+AGG - chr4_1:81229504-81229523 Msa0577070:CDS 55.0%
ACCGGATATTGGAAGGCGAC+CGG - chr4_1:81229511-81229530 Msa0577070:CDS 55.0%
TCCGGTCGCCTTCCAATATC+CGG + chr4_1:81229515-81229534 None:intergenic 55.0%
ACCGGAGCTGATAAGCCGAT+TGG - chr4_1:81229529-81229548 Msa0577070:CDS 55.0%
CTTGAGTCGGTGTGAAACCG+TGG + chr4_1:81229994-81230013 None:intergenic 55.0%
!! CGGTTTCACACCGACTCAAG+CGG - chr4_1:81229994-81230013 Msa0577070:intron 55.0%
GTGCTCAGAACCGCTTGAGT+CGG + chr4_1:81230007-81230026 None:intergenic 55.0%
CGTGGTTTCACCGTGCGATA+AGG - chr4_1:81230026-81230045 Msa0577070:CDS 55.0%
! AGATGACCCTTTTGCCCCTC+AGG - chr4_1:81230143-81230162 Msa0577070:CDS 55.0%
! CGGTTCGGCCTTGAACCGTT+TGG + chr4_1:81229481-81229500 None:intergenic 60.0%
AATATCCGGTTCCCGCAGCC+CGG + chr4_1:81229501-81229520 None:intergenic 60.0%
!! CTCAAGCGGTTCTGAGCACG+TGG - chr4_1:81230008-81230027 Msa0577070:CDS 60.0%
! CGGTTCGGCCTTGAACCGTT+TGG + chr4_1:81229481-81229500 None:intergenic 60.0%
AATATCCGGTTCCCGCAGCC+CGG + chr4_1:81229501-81229520 None:intergenic 60.0%
!! CTCAAGCGGTTCTGAGCACG+TGG - chr4_1:81230008-81230027 Msa0577070:CDS 60.0%
TTCAAGGCCGAACCGGGCTG+CGG - chr4_1:81229486-81229505 Msa0577070:CDS 65.0%
GGGCTGCGGGAACCGGATAT+TGG - chr4_1:81229500-81229519 Msa0577070:CDS 65.0%
TTCAAGGCCGAACCGGGCTG+CGG - chr4_1:81229486-81229505 Msa0577070:CDS 65.0%
GGGCTGCGGGAACCGGATAT+TGG - chr4_1:81229500-81229519 Msa0577070:CDS 65.0%
TCAAGGCCGAACCGGGCTGC+GGG - chr4_1:81229487-81229506 Msa0577070:CDS 70.0%
TCAAGGCCGAACCGGGCTGC+GGG - chr4_1:81229487-81229506 Msa0577070:CDS 70.0%
CCGGTTCCCGCAGCCCGGTT+CGG + chr4_1:81229496-81229515 None:intergenic 75.0%
CCGAACCGGGCTGCGGGAAC+CGG - chr4_1:81229493-81229512 Msa0577070:CDS 75.0%
CCGGTTCCCGCAGCCCGGTT+CGG + chr4_1:81229496-81229515 None:intergenic 75.0%
CCGAACCGGGCTGCGGGAAC+CGG - chr4_1:81229493-81229512 Msa0577070:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81228997 81230694 81228997 ID=Msa0577070;Name=Msa0577070
chr4_1 mRNA 81228997 81230694 81228997 ID=Msa0577070-mRNA-1;Parent=Msa0577070;Name=Msa0577070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|1|1|1|1|3|467|344
chr4_1 exon 81228997 81229889 81228997 ID=Msa0577070-mRNA-1:exon:29236;Parent=Msa0577070-mRNA-1
chr4_1 exon 81229995 81230272 81229995 ID=Msa0577070-mRNA-1:exon:29235;Parent=Msa0577070-mRNA-1
chr4_1 exon 81230364 81230694 81230364 ID=Msa0577070-mRNA-1:exon:29234;Parent=Msa0577070-mRNA-1
chr4_1 CDS 81230364 81230694 81230364 ID=Msa0577070-mRNA-1:cds;Parent=Msa0577070-mRNA-1
chr4_1 CDS 81229995 81230272 81229995 ID=Msa0577070-mRNA-1:cds;Parent=Msa0577070-mRNA-1
chr4_1 CDS 81229464 81229889 81229464 ID=Msa0577070-mRNA-1:cds;Parent=Msa0577070-mRNA-1
chr4_1 three_prime_UTR 81228997 81229463 81228997 ID=Msa0577070-mRNA-1:three_prime_utr;Parent=Msa0577070-mRNA-1
Gene Sequence

>Msa0577070

CTCCTATCCCCTATAAAACCACAACTTCTTCCTTTCTCACAACTTCGAACTCACTTCAATATCATATCCAATACTAACTACCCTAGCAGCCACCAACCAACACTGAAGAAGAAGAAGAAGAAAAAGAACAATAGTACGTATAGTATCAAGAAATTAATTGAATATACGCGAATGCAAGGAGCATTAGAATTACCACCTGGCTTCAGATTTCACCCGACTGATGATGAGCTTGTCAATCACTACTTGTGTAGAAAGTGTGCTTCCCTCCCTATAGCTGTTCCTATTATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCATCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAGTGGTATTTTTTCTCTCCAAGGGATCGTAAATATCCAAACGGTTCAAGGCCGAACCGGGCTGCGGGAACCGGATATTGGAAGGCGACCGGAGCTGATAAGCCGATTGGAAAGCCGAAGGCACTTGGGATAAAGAAAGCACTTGTTTTCTATGCTGGCAAAGCTCCCAAAGGAATTAAAACCAATTGGATCATGCATGAGTATCGTCTTGCTAATGTTGATAGATCCGCTTCAAAAAATAACCACAATTTAAGACTTGATGATTGGGTCTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAATGACACTAAACCACCACTGTTTTCTGAGGAAGCTCAATTTGAGAATGAGACAAAACCTCAGATCAAGATGAACGGCCAGGATGATTTTAGGAATAGTGATCAATTGTACACTGACACATCAGATTCGGTGCCACGGTTTCACACCGACTCAAGCGGTTCTGAGCACGTGGTTTCACCGTGCGATAAGGAAGTTCAAAGTGAGCCCAAGTGGAATGAATTTGTATTGGGCCCAGACCCAGTTTCAGCCTTTGATTTTCAGTTGAATCTTATGGATGATGGTGAAGATGACCCTTTTGCCCCTCAGGATCAGTACCAAATGAATCAATTTTCGGGTTGGCAAGATGTGTTTATGTACCTGCCCAAGTAA
Protein sequence

>Msa0577070

LLSPIKPQLLPFSQLRTHFNIISNTNYPSSHQPTLKKKKKKKNNSTYSIKKLIEYTRMQGALELPPGFRFHPTDDELVNHYLCRKCASLPIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASKNNHNLRLDDWVLCRIYNKKGKIEKYNDTKPPLFSEEAQFENETKPQIKMNGQDDFRNSDQLYTDTSDSVPRFHTDSSGSEHVVSPCDKEVQSEPKWNEFVLGPDPVSAFDFQLNLMDDGEDDPFAPQDQYQMNQFSGWQDVFMYLPK*