AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395580 MtrunA17_Chr7g0249071 65.746 181 6 2 1 175 1 131 9.70e-64 192
Msa1395580 MtrunA17_Chr4g0047431 50.000 110 54 1 65 173 277 386 2.27e-30 115
Msa1395580 MtrunA17_Chr4g0047431 45.545 101 55 0 68 168 151 251 7.33e-28 108
Msa1395580 MtrunA17_Chr4g0047431 43.590 117 63 2 53 166 370 486 3.96e-27 106
Msa1395580 MtrunA17_Chr4g0006981 41.860 129 71 2 46 171 186 313 7.49e-29 108
Msa1395580 MtrunA17_Chr2g0332591 41.053 95 56 0 73 167 55 149 2.06e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395580 AT3G54900.1 66.438 146 44 2 32 175 31 173 2.62e-65 198
Msa1395580 AT2G38270.1 43.411 129 69 2 44 169 165 292 1.62e-31 115
Msa1395580 AT4G04950.1 47.368 95 50 0 73 167 153 247 3.75e-28 109
Msa1395580 AT4G04950.1 48.936 94 48 0 73 166 390 483 5.78e-28 108
Msa1395580 AT4G04950.1 45.370 108 58 1 67 173 277 384 4.49e-26 103
Msa1395580 AT3G15660.2 41.837 98 57 0 70 167 62 159 2.08e-26 99.0
Msa1395580 AT3G15660.1 41.837 98 57 0 70 167 62 159 2.08e-26 99.0

Find 50 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTGTTTGAGTTGAATTT+TGG 0.141392 tig0021957:-6774 None:intergenic
TCCAATGTGGTCTTCAATTC+AGG 0.241214 tig0021957:-7067 None:intergenic
ATACTACATTGCAATTATTC+TGG 0.297963 tig0021957:+8704 Msa1395580:three_prime_UTR
ATACAATGGCTTTGGGATAA+TGG 0.300048 tig0021957:+8613 Msa1395580:three_prime_UTR
ACTAAGTTATACAATGGCTT+TGG 0.331381 tig0021957:+8605 Msa1395580:three_prime_UTR
TTTCCTCAGCTCTATATTGA+TGG 0.331430 tig0021957:+7274 Msa1395580:CDS
TCCACCACAATTCGCTGTTC+TGG 0.367215 tig0021957:+6800 Msa1395580:CDS
TAAACAGACCTTGCATTTGT+AGG 0.380551 tig0021957:-8889 None:intergenic
CTAAGTTATACAATGGCTTT+GGG 0.389442 tig0021957:+8606 Msa1395580:three_prime_UTR
CTGAGGAAAGGTAGGCCAAC+TGG 0.420603 tig0021957:-7260 None:intergenic
ATATAAGAATGGAGAATTGC+AGG 0.421470 tig0021957:+8524 Msa1395580:CDS
TTTGTTAAACTTCCTTGATC+GGG 0.424035 tig0021957:+8819 Msa1395580:three_prime_UTR
TCATGAGCAAATGAGGCTTC+AGG 0.426017 tig0021957:-8571 None:intergenic
GATTTCACAATTTAAATCAA+TGG 0.428082 tig0021957:-8861 None:intergenic
CTCTTTCCAAGTGTTACTGT+TGG 0.447737 tig0021957:-6546 None:intergenic
AAGAAGAATATCTCATTGAA+TGG 0.468025 tig0021957:+8739 Msa1395580:three_prime_UTR
AAGTGTACTTGCAAAGAGAA+TGG 0.479247 tig0021957:-6644 None:intergenic
TGGAATATTCCTTCAGTCCC+TGG 0.492321 tig0021957:-7240 None:intergenic
TGTAGTAGTTATCCCGATCA+AGG 0.521543 tig0021957:-8831 None:intergenic
TCCACACTGTGGAAAATCCT+TGG 0.530971 tig0021957:-7134 None:intergenic
ACAGTGTGGATTCTCAAATA+CGG 0.531828 tig0021957:+7147 Msa1395580:CDS
GGACAATGATATGTTACGCC+AGG 0.536196 tig0021957:+7222 Msa1395580:CDS
TGGAGAATTGCAGGAACTAG+TGG 0.537216 tig0021957:+8533 Msa1395580:CDS
ATAATCATAATAGACATTTG+TGG 0.542828 tig0021957:-8667 None:intergenic
ATTATGCTCATGAGCAAATG+AGG 0.554654 tig0021957:-8578 None:intergenic
GGAGGATGTGATATCACTGT+TGG 0.558875 tig0021957:+7307 Msa1395580:CDS
GAGTTGAAGCATGATGTTGT+TGG 0.561932 tig0021957:-6671 None:intergenic
GCTGCAGAGGCATATAAGAA+TGG 0.563746 tig0021957:+8513 Msa1395580:intron
ATCAGTCTCCTACAAATGCA+AGG 0.575601 tig0021957:+8881 Msa1395580:three_prime_UTR
ACAGTGACGAGGTTGTTACA+TGG 0.576288 tig0021957:-6694 None:intergenic
ATTGCAGGAACTAGTGGAGA+AGG 0.576931 tig0021957:+8539 Msa1395580:CDS
ATAAAACCAACAGTAACACT+TGG 0.577976 tig0021957:+6540 Msa1395580:five_prime_UTR
TATGTTACGCCAGGGACTGA+AGG 0.591574 tig0021957:+7231 Msa1395580:CDS
ACCAGAACAGCGAATTGTGG+TGG 0.597995 tig0021957:-6801 None:intergenic
GACTGAAGGAATATTCCAGT+TGG 0.605067 tig0021957:+7245 Msa1395580:CDS
ATATAGAGCTGAGGAAAGGT+AGG 0.606983 tig0021957:-7268 None:intergenic
CTTGGAAAGAGAATTGCGAC+TGG 0.611526 tig0021957:+6558 Msa1395580:five_prime_UTR
TTTGTTTATGAAGGGTACCA+AGG 0.617643 tig0021957:+7117 Msa1395580:CDS
ATCAATATAGAGCTGAGGAA+AGG 0.620513 tig0021957:-7272 None:intergenic
ATCATCACTAAGTTATACAA+TGG 0.627423 tig0021957:+8599 Msa1395580:three_prime_UTR
CAGTGACGAGGTTGTTACAT+GGG 0.629425 tig0021957:-6693 None:intergenic
GACAATGATATGTTACGCCA+GGG 0.633098 tig0021957:+7223 Msa1395580:CDS
TCCTGAATTGAAGACCACAT+TGG 0.633554 tig0021957:+7066 Msa1395580:CDS
TCTCCATCAATATAGAGCTG+AGG 0.637233 tig0021957:-7277 None:intergenic
TGTAACAACTTTATCCAATG+TGG 0.642987 tig0021957:-7080 None:intergenic
AGTACCAGAACAGCGAATTG+TGG 0.667307 tig0021957:-6804 None:intergenic
AGAACAAGAGATGAACGAGG+TGG 0.681161 tig0021957:-6722 None:intergenic
AGGTGGAAGAGACAGTGACG+AGG 0.722890 tig0021957:-6705 None:intergenic
TTAAGAACAAGAGATGAACG+AGG 0.769392 tig0021957:-6725 None:intergenic
GTATTTGAGAATCCACACTG+TGG 0.816826 tig0021957:-7145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATAGTTTTTCT+AGG - tig0021957:7715-7734 None:intergenic 10.0%
!!! TTAAGTTTATTTTTTAACAT+CGG + tig0021957:8423-8442 Msa1395580:intron 10.0%
!!! TTTTTATTTATAGTTTTTCT+AGG - tig0021957:7715-7734 None:intergenic 10.0%
!!! TTAAGTTTATTTTTTAACAT+CGG + tig0021957:8423-8442 Msa1395580:intron 10.0%
!!! AAAATAGTTTTGTTTATGAA+GGG + tig0021957:7109-7128 Msa1395580:CDS 15.0%
!! TAAATCTTCAAAAAATTAGA+AGG - tig0021957:8054-8073 None:intergenic 15.0%
!! AATTAAAACCTAAAAAGAAA+TGG + tig0021957:8083-8102 Msa1395580:intron 15.0%
!!! ATTTTTTTTTCCAACTTTTA+TGG - tig0021957:8330-8349 None:intergenic 15.0%
!!! AAAATAGTTTTGTTTATGAA+GGG + tig0021957:7109-7128 Msa1395580:CDS 15.0%
!! TAAATCTTCAAAAAATTAGA+AGG - tig0021957:8054-8073 None:intergenic 15.0%
!! AATTAAAACCTAAAAAGAAA+TGG + tig0021957:8083-8102 Msa1395580:intron 15.0%
!!! ATTTTTTTTTCCAACTTTTA+TGG - tig0021957:8330-8349 None:intergenic 15.0%
!! TGAATTGTGTAAAAATTGAA+GGG - tig0021957:6909-6928 None:intergenic 20.0%
!! ATATAATCTTATATGCAACT+TGG + tig0021957:7009-7028 Msa1395580:intron 20.0%
!! TATAATCTTATATGCAACTT+GGG + tig0021957:7010-7029 Msa1395580:intron 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG + tig0021957:7108-7127 Msa1395580:CDS 20.0%
!!! TTTTGAAACGATAAACATAT+TGG + tig0021957:7201-7220 Msa1395580:CDS 20.0%
!! TAATGAGTTCGATATAAATA+TGG + tig0021957:7760-7779 Msa1395580:intron 20.0%
!! TAGTTATCATGTTAAACTAA+TGG + tig0021957:7994-8013 Msa1395580:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG + tig0021957:8011-8030 Msa1395580:intron 20.0%
!!! AAATTAGAAGGAAAGTATAT+AGG - tig0021957:8042-8061 None:intergenic 20.0%
!! ATAATCATAATAGACATTTG+TGG - tig0021957:8670-8689 None:intergenic 20.0%
!! GATTTCACAATTTAAATCAA+TGG - tig0021957:8864-8883 None:intergenic 20.0%
!! TGAATTGTGTAAAAATTGAA+GGG - tig0021957:6909-6928 None:intergenic 20.0%
!! ATATAATCTTATATGCAACT+TGG + tig0021957:7009-7028 Msa1395580:intron 20.0%
!! TATAATCTTATATGCAACTT+GGG + tig0021957:7010-7029 Msa1395580:intron 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG + tig0021957:7108-7127 Msa1395580:CDS 20.0%
!!! TTTTGAAACGATAAACATAT+TGG + tig0021957:7201-7220 Msa1395580:CDS 20.0%
!! TAATGAGTTCGATATAAATA+TGG + tig0021957:7760-7779 Msa1395580:intron 20.0%
!! TAGTTATCATGTTAAACTAA+TGG + tig0021957:7994-8013 Msa1395580:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG + tig0021957:8011-8030 Msa1395580:intron 20.0%
!!! AAATTAGAAGGAAAGTATAT+AGG - tig0021957:8042-8061 None:intergenic 20.0%
!! ATAATCATAATAGACATTTG+TGG - tig0021957:8670-8689 None:intergenic 20.0%
!! GATTTCACAATTTAAATCAA+TGG - tig0021957:8864-8883 None:intergenic 20.0%
! GTGAATTGTGTAAAAATTGA+AGG - tig0021957:6910-6929 None:intergenic 25.0%
! AAATAGACTTAACCCTAAAA+GGG - tig0021957:6941-6960 None:intergenic 25.0%
! AAAATAGACTTAACCCTAAA+AGG - tig0021957:6942-6961 None:intergenic 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG + tig0021957:7286-7305 Msa1395580:CDS 25.0%
! ATGAAAATCAGAAATTCAAG+AGG - tig0021957:7338-7357 None:intergenic 25.0%
! TTATGTTAACATTATCACCA+AGG - tig0021957:7411-7430 None:intergenic 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG - tig0021957:7468-7487 None:intergenic 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG + tig0021957:7849-7868 Msa1395580:intron 25.0%
! AGCTATGGATAATTAGTAAT+AGG + tig0021957:7902-7921 Msa1395580:intron 25.0%
! TTCATATTTACATTTGAGCT+AGG + tig0021957:7941-7960 Msa1395580:intron 25.0%
!! AACTCTTTCCATTTCTTTTT+AGG - tig0021957:8094-8113 None:intergenic 25.0%
! AAAGATTAATATGTGCAAAC+TGG - tig0021957:8267-8286 None:intergenic 25.0%
!! ACTTTTATGGATCAATTACA+AGG - tig0021957:8317-8336 None:intergenic 25.0%
! TGTAATTGATCCATAAAAGT+TGG + tig0021957:8317-8336 Msa1395580:intron 25.0%
!! AAAAAAAAATGCTTTCGAGT+AGG + tig0021957:8340-8359 Msa1395580:intron 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG + tig0021957:8491-8510 Msa1395580:intron 25.0%
! ATCATCACTAAGTTATACAA+TGG + tig0021957:8599-8618 Msa1395580:three_prime_UTR 25.0%
! ATACTACATTGCAATTATTC+TGG + tig0021957:8704-8723 Msa1395580:three_prime_UTR 25.0%
! AAGAAGAATATCTCATTGAA+TGG + tig0021957:8739-8758 Msa1395580:three_prime_UTR 25.0%
!! TTTTGTTAAACTTCCTTGAT+CGG + tig0021957:8818-8837 Msa1395580:three_prime_UTR 25.0%
!! TTTTATCAAATCATGGATGA+GGG - tig0021957:6526-6545 None:intergenic 25.0%
! GTGAATTGTGTAAAAATTGA+AGG - tig0021957:6910-6929 None:intergenic 25.0%
! AAATAGACTTAACCCTAAAA+GGG - tig0021957:6941-6960 None:intergenic 25.0%
! AAAATAGACTTAACCCTAAA+AGG - tig0021957:6942-6961 None:intergenic 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG + tig0021957:7286-7305 Msa1395580:CDS 25.0%
! ATGAAAATCAGAAATTCAAG+AGG - tig0021957:7338-7357 None:intergenic 25.0%
! TTATGTTAACATTATCACCA+AGG - tig0021957:7411-7430 None:intergenic 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG - tig0021957:7468-7487 None:intergenic 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG + tig0021957:7849-7868 Msa1395580:intron 25.0%
! AGCTATGGATAATTAGTAAT+AGG + tig0021957:7902-7921 Msa1395580:intron 25.0%
! TTCATATTTACATTTGAGCT+AGG + tig0021957:7941-7960 Msa1395580:intron 25.0%
!! AACTCTTTCCATTTCTTTTT+AGG - tig0021957:8094-8113 None:intergenic 25.0%
! AAAGATTAATATGTGCAAAC+TGG - tig0021957:8267-8286 None:intergenic 25.0%
!! ACTTTTATGGATCAATTACA+AGG - tig0021957:8317-8336 None:intergenic 25.0%
! TGTAATTGATCCATAAAAGT+TGG + tig0021957:8317-8336 Msa1395580:intron 25.0%
!! AAAAAAAAATGCTTTCGAGT+AGG + tig0021957:8340-8359 Msa1395580:intron 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG + tig0021957:8491-8510 Msa1395580:intron 25.0%
! ATCATCACTAAGTTATACAA+TGG + tig0021957:8599-8618 Msa1395580:three_prime_UTR 25.0%
! ATACTACATTGCAATTATTC+TGG + tig0021957:8704-8723 Msa1395580:three_prime_UTR 25.0%
! AAGAAGAATATCTCATTGAA+TGG + tig0021957:8739-8758 Msa1395580:three_prime_UTR 25.0%
!! TTTTGTTAAACTTCCTTGAT+CGG + tig0021957:8818-8837 Msa1395580:three_prime_UTR 25.0%
! GTTTTATCAAATCATGGATG+AGG - tig0021957:6527-6546 None:intergenic 30.0%
!!! CTGTTGGTTTTATCAAATCA+TGG - tig0021957:6533-6552 None:intergenic 30.0%
ATAAAACCAACAGTAACACT+TGG + tig0021957:6540-6559 Msa1395580:five_prime_UTR 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG - tig0021957:6771-6790 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG - tig0021957:6776-6795 None:intergenic 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG - tig0021957:6777-6796 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG - tig0021957:6894-6913 None:intergenic 30.0%
ATTGAAGGGTGAAATTGAAA+TGG - tig0021957:6895-6914 None:intergenic 30.0%
AATAGACTTAACCCTAAAAG+GGG - tig0021957:6940-6959 None:intergenic 30.0%
TGTAACAACTTTATCCAATG+TGG - tig0021957:7083-7102 None:intergenic 30.0%
AATACAAAAGTTGACCAGAT+TGG + tig0021957:8147-8166 Msa1395580:intron 30.0%
! ACTTGCATTTAAAACCAATC+TGG - tig0021957:8164-8183 None:intergenic 30.0%
AACACGATAGAATATTTGTC+AGG - tig0021957:8189-8208 None:intergenic 30.0%
TGACAAATATTCTATCGTGT+TGG + tig0021957:8188-8207 Msa1395580:intron 30.0%
ATATAAGAATGGAGAATTGC+AGG + tig0021957:8524-8543 Msa1395580:CDS 30.0%
ACTAAGTTATACAATGGCTT+TGG + tig0021957:8605-8624 Msa1395580:three_prime_UTR 30.0%
CTAAGTTATACAATGGCTTT+GGG + tig0021957:8606-8625 Msa1395580:three_prime_UTR 30.0%
TTTGTTAAACTTCCTTGATC+GGG + tig0021957:8819-8838 Msa1395580:three_prime_UTR 30.0%
TTTATCAAATCATGGATGAG+GGG - tig0021957:6525-6544 None:intergenic 30.0%
! GTTTTATCAAATCATGGATG+AGG - tig0021957:6527-6546 None:intergenic 30.0%
!!! CTGTTGGTTTTATCAAATCA+TGG - tig0021957:6533-6552 None:intergenic 30.0%
ATAAAACCAACAGTAACACT+TGG + tig0021957:6540-6559 Msa1395580:five_prime_UTR 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG - tig0021957:6771-6790 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG - tig0021957:6776-6795 None:intergenic 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG - tig0021957:6777-6796 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG - tig0021957:6894-6913 None:intergenic 30.0%
ATTGAAGGGTGAAATTGAAA+TGG - tig0021957:6895-6914 None:intergenic 30.0%
AATAGACTTAACCCTAAAAG+GGG - tig0021957:6940-6959 None:intergenic 30.0%
TGTAACAACTTTATCCAATG+TGG - tig0021957:7083-7102 None:intergenic 30.0%
AATACAAAAGTTGACCAGAT+TGG + tig0021957:8147-8166 Msa1395580:intron 30.0%
! ACTTGCATTTAAAACCAATC+TGG - tig0021957:8164-8183 None:intergenic 30.0%
AACACGATAGAATATTTGTC+AGG - tig0021957:8189-8208 None:intergenic 30.0%
TGACAAATATTCTATCGTGT+TGG + tig0021957:8188-8207 Msa1395580:intron 30.0%
ATATAAGAATGGAGAATTGC+AGG + tig0021957:8524-8543 Msa1395580:CDS 30.0%
ACTAAGTTATACAATGGCTT+TGG + tig0021957:8605-8624 Msa1395580:three_prime_UTR 30.0%
CTAAGTTATACAATGGCTTT+GGG + tig0021957:8606-8625 Msa1395580:three_prime_UTR 30.0%
TTTGTTAAACTTCCTTGATC+GGG + tig0021957:8819-8838 Msa1395580:three_prime_UTR 30.0%
AAGTGTACTTGCAAAGAGAA+TGG - tig0021957:6647-6666 None:intergenic 35.0%
TTAAGAACAAGAGATGAACG+AGG - tig0021957:6728-6747 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG - tig0021957:6772-6791 None:intergenic 35.0%
AATTAAGTGAAAACCCACGA+AGG - tig0021957:6845-6864 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG - tig0021957:6893-6912 None:intergenic 35.0%
! TTCACAAAAAAGCCCCTTTT+AGG + tig0021957:6925-6944 Msa1395580:intron 35.0%
! TCACAAAAAAGCCCCTTTTA+GGG + tig0021957:6926-6945 Msa1395580:intron 35.0%
!! TTTGTTTATGAAGGGTACCA+AGG + tig0021957:7117-7136 Msa1395580:CDS 35.0%
ACAGTGTGGATTCTCAAATA+CGG + tig0021957:7147-7166 Msa1395580:CDS 35.0%
! ATACGGTTGTGCAAATTTTG+AGG + tig0021957:7164-7183 Msa1395580:CDS 35.0%
ATCAATATAGAGCTGAGGAA+AGG - tig0021957:7275-7294 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG + tig0021957:7274-7293 Msa1395580:CDS 35.0%
!!! ATTGATGGAGAGTTTTTTGG+AGG + tig0021957:7289-7308 Msa1395580:CDS 35.0%
TGTCTGTGTGGTACAATATT+TGG + tig0021957:7367-7386 Msa1395580:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG - tig0021957:7393-7412 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG + tig0021957:7391-7410 Msa1395580:intron 35.0%
TGTTGTATGAGACATAGTCT+TGG + tig0021957:7431-7450 Msa1395580:intron 35.0%
AACTAAGTGTAGCAGATATG+TGG + tig0021957:7479-7498 Msa1395580:intron 35.0%
GATGTGTGGTAAGATTAGAT+GGG + tig0021957:7513-7532 Msa1395580:intron 35.0%
ACCTATAGTACAAAAGTTGC+TGG + tig0021957:7582-7601 Msa1395580:intron 35.0%
! TCCAGCAACTTTTGTACTAT+AGG - tig0021957:7586-7605 None:intergenic 35.0%
TACAAAAGTTGCTGGAAACT+AGG + tig0021957:7590-7609 Msa1395580:intron 35.0%
GACCTCTAGATTATGTAGTA+AGG + tig0021957:7641-7660 Msa1395580:intron 35.0%
CTCCTTACTACATAATCTAG+AGG - tig0021957:7646-7665 None:intergenic 35.0%
AGTAAACATATGAAAGCTGG+AGG - tig0021957:8367-8386 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG - tig0021957:8370-8389 None:intergenic 35.0%
ATTATGCTCATGAGCAAATG+AGG - tig0021957:8581-8600 None:intergenic 35.0%
!! ATACAATGGCTTTGGGATAA+TGG + tig0021957:8613-8632 Msa1395580:three_prime_UTR 35.0%
TAAACAGACCTTGCATTTGT+AGG - tig0021957:8892-8911 None:intergenic 35.0%
TTATCAAATCATGGATGAGG+GGG - tig0021957:6524-6543 None:intergenic 35.0%
AAGTGTACTTGCAAAGAGAA+TGG - tig0021957:6647-6666 None:intergenic 35.0%
TTAAGAACAAGAGATGAACG+AGG - tig0021957:6728-6747 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG - tig0021957:6772-6791 None:intergenic 35.0%
AATTAAGTGAAAACCCACGA+AGG - tig0021957:6845-6864 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG - tig0021957:6893-6912 None:intergenic 35.0%
! TTCACAAAAAAGCCCCTTTT+AGG + tig0021957:6925-6944 Msa1395580:intron 35.0%
! TCACAAAAAAGCCCCTTTTA+GGG + tig0021957:6926-6945 Msa1395580:intron 35.0%
!! TTTGTTTATGAAGGGTACCA+AGG + tig0021957:7117-7136 Msa1395580:CDS 35.0%
ACAGTGTGGATTCTCAAATA+CGG + tig0021957:7147-7166 Msa1395580:CDS 35.0%
! ATACGGTTGTGCAAATTTTG+AGG + tig0021957:7164-7183 Msa1395580:CDS 35.0%
ATCAATATAGAGCTGAGGAA+AGG - tig0021957:7275-7294 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG + tig0021957:7274-7293 Msa1395580:CDS 35.0%
!!! ATTGATGGAGAGTTTTTTGG+AGG + tig0021957:7289-7308 Msa1395580:CDS 35.0%
TGTCTGTGTGGTACAATATT+TGG + tig0021957:7367-7386 Msa1395580:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG - tig0021957:7393-7412 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG + tig0021957:7391-7410 Msa1395580:intron 35.0%
TGTTGTATGAGACATAGTCT+TGG + tig0021957:7431-7450 Msa1395580:intron 35.0%
AACTAAGTGTAGCAGATATG+TGG + tig0021957:7479-7498 Msa1395580:intron 35.0%
GATGTGTGGTAAGATTAGAT+GGG + tig0021957:7513-7532 Msa1395580:intron 35.0%
ACCTATAGTACAAAAGTTGC+TGG + tig0021957:7582-7601 Msa1395580:intron 35.0%
! TCCAGCAACTTTTGTACTAT+AGG - tig0021957:7586-7605 None:intergenic 35.0%
TACAAAAGTTGCTGGAAACT+AGG + tig0021957:7590-7609 Msa1395580:intron 35.0%
GACCTCTAGATTATGTAGTA+AGG + tig0021957:7641-7660 Msa1395580:intron 35.0%
CTCCTTACTACATAATCTAG+AGG - tig0021957:7646-7665 None:intergenic 35.0%
AGTAAACATATGAAAGCTGG+AGG - tig0021957:8367-8386 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG - tig0021957:8370-8389 None:intergenic 35.0%
ATTATGCTCATGAGCAAATG+AGG - tig0021957:8581-8600 None:intergenic 35.0%
!! ATACAATGGCTTTGGGATAA+TGG + tig0021957:8613-8632 Msa1395580:three_prime_UTR 35.0%
TAAACAGACCTTGCATTTGT+AGG - tig0021957:8892-8911 None:intergenic 35.0%
! CTCTTTCCAAGTGTTACTGT+TGG - tig0021957:6549-6568 None:intergenic 40.0%
GAGTTGAAGCATGATGTTGT+TGG - tig0021957:6674-6693 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG - tig0021957:6766-6785 None:intergenic 40.0%
AAAACCCACGAAGGAAAAGA+GGG - tig0021957:6836-6855 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG - tig0021957:6892-6911 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG + tig0021957:7066-7085 Msa1395580:CDS 40.0%
TCCAATGTGGTCTTCAATTC+AGG - tig0021957:7070-7089 None:intergenic 40.0%
GTATTTGAGAATCCACACTG+TGG - tig0021957:7148-7167 None:intergenic 40.0%
GACAATGATATGTTACGCCA+GGG + tig0021957:7223-7242 Msa1395580:CDS 40.0%
GACTGAAGGAATATTCCAGT+TGG + tig0021957:7245-7264 Msa1395580:CDS 40.0%
ATATAGAGCTGAGGAAAGGT+AGG - tig0021957:7271-7290 None:intergenic 40.0%
TCTCCATCAATATAGAGCTG+AGG - tig0021957:7280-7299 None:intergenic 40.0%
!! CATACTTGTTTCTGTCTGTG+TGG + tig0021957:7355-7374 Msa1395580:intron 40.0%
GGATGTGTGGTAAGATTAGA+TGG + tig0021957:7512-7531 Msa1395580:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG + tig0021957:7605-7624 Msa1395580:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + tig0021957:7657-7676 Msa1395580:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - tig0021957:7829-7848 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG + tig0021957:7865-7884 Msa1395580:intron 40.0%
CATGCTCAAAGATTCCATCA+GGG - tig0021957:7882-7901 None:intergenic 40.0%
TCATGCTCAAAGATTCCATC+AGG - tig0021957:7883-7902 None:intergenic 40.0%
GAATCTTTGAGCATGAGCTA+TGG + tig0021957:7887-7906 Msa1395580:intron 40.0%
GGATCAATTACAAGGAAGCA+AGG - tig0021957:8309-8328 None:intergenic 40.0%
TGTAGTAGTTATCCCGATCA+AGG - tig0021957:8834-8853 None:intergenic 40.0%
ATCAGTCTCCTACAAATGCA+AGG + tig0021957:8881-8900 Msa1395580:three_prime_UTR 40.0%
! CTCTTTCCAAGTGTTACTGT+TGG - tig0021957:6549-6568 None:intergenic 40.0%
GAGTTGAAGCATGATGTTGT+TGG - tig0021957:6674-6693 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG - tig0021957:6766-6785 None:intergenic 40.0%
AAAACCCACGAAGGAAAAGA+GGG - tig0021957:6836-6855 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG - tig0021957:6892-6911 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG + tig0021957:7066-7085 Msa1395580:CDS 40.0%
TCCAATGTGGTCTTCAATTC+AGG - tig0021957:7070-7089 None:intergenic 40.0%
GTATTTGAGAATCCACACTG+TGG - tig0021957:7148-7167 None:intergenic 40.0%
GACAATGATATGTTACGCCA+GGG + tig0021957:7223-7242 Msa1395580:CDS 40.0%
GACTGAAGGAATATTCCAGT+TGG + tig0021957:7245-7264 Msa1395580:CDS 40.0%
ATATAGAGCTGAGGAAAGGT+AGG - tig0021957:7271-7290 None:intergenic 40.0%
TCTCCATCAATATAGAGCTG+AGG - tig0021957:7280-7299 None:intergenic 40.0%
!! CATACTTGTTTCTGTCTGTG+TGG + tig0021957:7355-7374 Msa1395580:intron 40.0%
GGATGTGTGGTAAGATTAGA+TGG + tig0021957:7512-7531 Msa1395580:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG + tig0021957:7605-7624 Msa1395580:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + tig0021957:7657-7676 Msa1395580:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - tig0021957:7829-7848 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG + tig0021957:7865-7884 Msa1395580:intron 40.0%
CATGCTCAAAGATTCCATCA+GGG - tig0021957:7882-7901 None:intergenic 40.0%
TCATGCTCAAAGATTCCATC+AGG - tig0021957:7883-7902 None:intergenic 40.0%
GAATCTTTGAGCATGAGCTA+TGG + tig0021957:7887-7906 Msa1395580:intron 40.0%
GGATCAATTACAAGGAAGCA+AGG - tig0021957:8309-8328 None:intergenic 40.0%
TGTAGTAGTTATCCCGATCA+AGG - tig0021957:8834-8853 None:intergenic 40.0%
ATCAGTCTCCTACAAATGCA+AGG + tig0021957:8881-8900 Msa1395580:three_prime_UTR 40.0%
CTTGGAAAGAGAATTGCGAC+TGG + tig0021957:6558-6577 Msa1395580:five_prime_UTR 45.0%
CAGTGACGAGGTTGTTACAT+GGG - tig0021957:6696-6715 None:intergenic 45.0%
ACAGTGACGAGGTTGTTACA+TGG - tig0021957:6697-6716 None:intergenic 45.0%
AGAACAAGAGATGAACGAGG+TGG - tig0021957:6725-6744 None:intergenic 45.0%
AGTACCAGAACAGCGAATTG+TGG - tig0021957:6807-6826 None:intergenic 45.0%
! TCTACCCTCTTTTCCTTCGT+GGG + tig0021957:6829-6848 Msa1395580:intron 45.0%
GAAAACCCACGAAGGAAAAG+AGG - tig0021957:6837-6856 None:intergenic 45.0%
! ACCAAGGATTTTCCACAGTG+TGG + tig0021957:7133-7152 Msa1395580:CDS 45.0%
TCCACACTGTGGAAAATCCT+TGG - tig0021957:7137-7156 None:intergenic 45.0%
GGACAATGATATGTTACGCC+AGG + tig0021957:7222-7241 Msa1395580:CDS 45.0%
TGGAATATTCCTTCAGTCCC+TGG - tig0021957:7243-7262 None:intergenic 45.0%
GGAGGATGTGATATCACTGT+TGG + tig0021957:7307-7326 Msa1395580:CDS 45.0%
CAGATATGTGGATGTTGCGT+TGG + tig0021957:7491-7510 Msa1395580:intron 45.0%
GAGAGAGAGAGAGAGAGTTA+GGG + tig0021957:7555-7574 Msa1395580:intron 45.0%
AGTTGCTGGAAACTAGGCTT+AGG + tig0021957:7596-7615 Msa1395580:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG + tig0021957:7604-7623 Msa1395580:intron 45.0%
AGTCAAATCACCAGAGACAG+AGG + tig0021957:7685-7704 Msa1395580:intron 45.0%
TCTAGGTATTCCTCTGTCTC+TGG - tig0021957:7698-7717 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0021957:7828-7847 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - tig0021957:7830-7849 None:intergenic 45.0%
! CACTTTGTTTATGGCTGCAG+AGG + tig0021957:8500-8519 Msa1395580:intron 45.0%
! GCTGCAGAGGCATATAAGAA+TGG + tig0021957:8513-8532 Msa1395580:intron 45.0%
TGGAGAATTGCAGGAACTAG+TGG + tig0021957:8533-8552 Msa1395580:CDS 45.0%
ATTGCAGGAACTAGTGGAGA+AGG + tig0021957:8539-8558 Msa1395580:CDS 45.0%
TCATGAGCAAATGAGGCTTC+AGG - tig0021957:8574-8593 None:intergenic 45.0%
CTTGGAAAGAGAATTGCGAC+TGG + tig0021957:6558-6577 Msa1395580:five_prime_UTR 45.0%
CAGTGACGAGGTTGTTACAT+GGG - tig0021957:6696-6715 None:intergenic 45.0%
ACAGTGACGAGGTTGTTACA+TGG - tig0021957:6697-6716 None:intergenic 45.0%
AGAACAAGAGATGAACGAGG+TGG - tig0021957:6725-6744 None:intergenic 45.0%
AGTACCAGAACAGCGAATTG+TGG - tig0021957:6807-6826 None:intergenic 45.0%
! TCTACCCTCTTTTCCTTCGT+GGG + tig0021957:6829-6848 Msa1395580:intron 45.0%
GAAAACCCACGAAGGAAAAG+AGG - tig0021957:6837-6856 None:intergenic 45.0%
! ACCAAGGATTTTCCACAGTG+TGG + tig0021957:7133-7152 Msa1395580:CDS 45.0%
TCCACACTGTGGAAAATCCT+TGG - tig0021957:7137-7156 None:intergenic 45.0%
GGACAATGATATGTTACGCC+AGG + tig0021957:7222-7241 Msa1395580:CDS 45.0%
TGGAATATTCCTTCAGTCCC+TGG - tig0021957:7243-7262 None:intergenic 45.0%
GGAGGATGTGATATCACTGT+TGG + tig0021957:7307-7326 Msa1395580:CDS 45.0%
CAGATATGTGGATGTTGCGT+TGG + tig0021957:7491-7510 Msa1395580:intron 45.0%
GAGAGAGAGAGAGAGAGTTA+GGG + tig0021957:7555-7574 Msa1395580:intron 45.0%
AGTTGCTGGAAACTAGGCTT+AGG + tig0021957:7596-7615 Msa1395580:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG + tig0021957:7604-7623 Msa1395580:intron 45.0%
AGTCAAATCACCAGAGACAG+AGG + tig0021957:7685-7704 Msa1395580:intron 45.0%
TCTAGGTATTCCTCTGTCTC+TGG - tig0021957:7698-7717 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0021957:7828-7847 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - tig0021957:7830-7849 None:intergenic 45.0%
! CACTTTGTTTATGGCTGCAG+AGG + tig0021957:8500-8519 Msa1395580:intron 45.0%
! GCTGCAGAGGCATATAAGAA+TGG + tig0021957:8513-8532 Msa1395580:intron 45.0%
TGGAGAATTGCAGGAACTAG+TGG + tig0021957:8533-8552 Msa1395580:CDS 45.0%
ATTGCAGGAACTAGTGGAGA+AGG + tig0021957:8539-8558 Msa1395580:CDS 45.0%
TCATGAGCAAATGAGGCTTC+AGG - tig0021957:8574-8593 None:intergenic 45.0%
TCCACCACAATTCGCTGTTC+TGG + tig0021957:6800-6819 Msa1395580:CDS 50.0%
ACCAGAACAGCGAATTGTGG+TGG - tig0021957:6804-6823 None:intergenic 50.0%
! CTCTACCCTCTTTTCCTTCG+TGG + tig0021957:6828-6847 Msa1395580:intron 50.0%
TATGTTACGCCAGGGACTGA+AGG + tig0021957:7231-7250 Msa1395580:CDS 50.0%
TGGATGTTGCGTTGGATGTG+TGG + tig0021957:7499-7518 Msa1395580:intron 50.0%
CGAGAGAGAGAGAGAGAGTT+AGG + tig0021957:7554-7573 Msa1395580:intron 50.0%
TGCTGGAAACTAGGCTTAGG+TGG + tig0021957:7599-7618 Msa1395580:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0021957:7824-7843 None:intergenic 50.0%
TCCACCACAATTCGCTGTTC+TGG + tig0021957:6800-6819 Msa1395580:CDS 50.0%
ACCAGAACAGCGAATTGTGG+TGG - tig0021957:6804-6823 None:intergenic 50.0%
! CTCTACCCTCTTTTCCTTCG+TGG + tig0021957:6828-6847 Msa1395580:intron 50.0%
TATGTTACGCCAGGGACTGA+AGG + tig0021957:7231-7250 Msa1395580:CDS 50.0%
TGGATGTTGCGTTGGATGTG+TGG + tig0021957:7499-7518 Msa1395580:intron 50.0%
CGAGAGAGAGAGAGAGAGTT+AGG + tig0021957:7554-7573 Msa1395580:intron 50.0%
TGCTGGAAACTAGGCTTAGG+TGG + tig0021957:7599-7618 Msa1395580:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0021957:7824-7843 None:intergenic 50.0%
AGGTGGAAGAGACAGTGACG+AGG - tig0021957:6708-6727 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG - tig0021957:7263-7282 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0021957:7816-7835 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0021957:7815-7834 Msa1395580:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0021957:7816-7835 Msa1395580:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0021957:7822-7841 Msa1395580:intron 55.0%
AGGTGGAAGAGACAGTGACG+AGG - tig0021957:6708-6727 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG - tig0021957:7263-7282 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0021957:7816-7835 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0021957:7815-7834 Msa1395580:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0021957:7816-7835 Msa1395580:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0021957:7822-7841 Msa1395580:intron 55.0%
Chromosome Type Strat End Strand Name
tig0021957 gene 6524 8922 6524 ID=Msa1395580;Name=Msa1395580
tig0021957 mRNA 6524 8922 6524 ID=Msa1395580-mRNA-1;Parent=Msa1395580;Name=Msa1395580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96|1|1|1|1|1|3|347|175
tig0021957 exon 6524 6821 6524 ID=Msa1395580-mRNA-1:exon:14951;Parent=Msa1395580-mRNA-1
tig0021957 exon 7059 7328 7059 ID=Msa1395580-mRNA-1:exon:14952;Parent=Msa1395580-mRNA-1
tig0021957 exon 8520 8922 8520 ID=Msa1395580-mRNA-1:exon:14953;Parent=Msa1395580-mRNA-1
tig0021957 five_prime_UTR 6524 6619 6524 ID=Msa1395580-mRNA-1:five_prime_utr;Parent=Msa1395580-mRNA-1
tig0021957 CDS 6620 6821 6620 ID=Msa1395580-mRNA-1:cds;Parent=Msa1395580-mRNA-1
tig0021957 CDS 7059 7328 7059 ID=Msa1395580-mRNA-1:cds;Parent=Msa1395580-mRNA-1
tig0021957 CDS 8520 8575 8520 ID=Msa1395580-mRNA-1:cds;Parent=Msa1395580-mRNA-1
tig0021957 three_prime_UTR 8576 8922 8576 ID=Msa1395580-mRNA-1:three_prime_utr;Parent=Msa1395580-mRNA-1
Gene Sequence

>Msa1395580

ATGTCTTTGAGTTCGTGCGTTAAACCATTCTCTTTGCAAGTACACTTGTATCCAACAACATCATGCTTCAACTCCCATGTAACAACCTCGTCACTGTCTCTTCCACCTCGTTCATCTCTTGTTCTTAAACAAAACACTATTTTCCATTCCCAACCCAAAATTCAACTCAAACAACGTTTTTCCACCACAATTCGCTGTTCTGCTTTGACTCCTGAATTGAAGACCACATTGGATAAAGTTGTTACATCAAACAAAATAGTTTTGTTTATGAAGGGTACCAAGGATTTTCCACAGTGTGGATTCTCAAATACGGTTGTGCAAATTTTGAGGTCTTTGAATGCGTCTTTTGAAACGATAAACATATTGGACAATGATATGTTACGCCAGGGACTGAAGGAATATTCCAGTTGGCCTACCTTTCCTCAGCTCTATATTGATGGAGAGTTTTTTGGAGGATGTGATATCACTGTTGAGGCATATAAGAATGGAGAATTGCAGGAACTAGTGGAGAAGGCAATGTGCTCCTGA

Protein sequence

>Msa1395580

MSLSSCVKPFSLQVHLYPTTSCFNSHVTTSSLSLPPRSSLVLKQNTIFHSQPKIQLKQRFSTTIRCSALTPELKTTLDKVVTSNKIVLFMKGTKDFPQCGFSNTVVQILRSLNASFETINILDNDMLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKNGELQELVEKAMCS*