AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067910 MtrunA17_Chr7g0249071 65.746 181 6 2 1 175 1 131 9.70e-64 192
Msa1067910 MtrunA17_Chr4g0047431 50.000 110 54 1 65 173 277 386 2.27e-30 115
Msa1067910 MtrunA17_Chr4g0047431 45.545 101 55 0 68 168 151 251 7.33e-28 108
Msa1067910 MtrunA17_Chr4g0047431 43.590 117 63 2 53 166 370 486 3.96e-27 106
Msa1067910 MtrunA17_Chr4g0006981 41.860 129 71 2 46 171 186 313 7.49e-29 108
Msa1067910 MtrunA17_Chr2g0332591 41.053 95 56 0 73 167 55 149 2.06e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067910 AT3G54900.1 66.438 146 44 2 32 175 31 173 2.62e-65 198
Msa1067910 AT2G38270.1 43.411 129 69 2 44 169 165 292 1.62e-31 115
Msa1067910 AT4G04950.1 47.368 95 50 0 73 167 153 247 3.75e-28 109
Msa1067910 AT4G04950.1 48.936 94 48 0 73 166 390 483 5.78e-28 108
Msa1067910 AT4G04950.1 45.370 108 58 1 67 173 277 384 4.49e-26 103
Msa1067910 AT3G15660.2 41.837 98 57 0 70 167 62 159 2.08e-26 99.0
Msa1067910 AT3G15660.1 41.837 98 57 0 70 167 62 159 2.08e-26 99.0

Find 50 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTGTTTGAGTTGAATTT+TGG 0.141392 7_2:+62852737 None:intergenic
TCCAATGTGGTCTTCAATTC+AGG 0.241214 7_2:+62852444 None:intergenic
ATACTACATTGCAATTATTC+TGG 0.297963 7_2:-62850807 Msa1067910:three_prime_UTR
ATACAATGGCTTTGGGATAA+TGG 0.300048 7_2:-62850898 Msa1067910:three_prime_UTR
ACTAAGTTATACAATGGCTT+TGG 0.331381 7_2:-62850906 Msa1067910:three_prime_UTR
TTTCCTCAGCTCTATATTGA+TGG 0.331430 7_2:-62852237 Msa1067910:CDS
TCCACCACAATTCGCTGTTC+TGG 0.367215 7_2:-62852711 Msa1067910:intron
TAAACAGACCTTGCATTTGT+AGG 0.380551 7_2:+62850622 None:intergenic
CTAAGTTATACAATGGCTTT+GGG 0.389442 7_2:-62850905 Msa1067910:three_prime_UTR
CTGAGGAAAGGTAGGCCAAC+TGG 0.420603 7_2:+62852251 None:intergenic
ATATAAGAATGGAGAATTGC+AGG 0.421470 7_2:-62850987 Msa1067910:CDS
TTTGTTAAACTTCCTTGATC+GGG 0.424035 7_2:-62850692 Msa1067910:three_prime_UTR
TCATGAGCAAATGAGGCTTC+AGG 0.426017 7_2:+62850940 None:intergenic
GATTTCACAATTTAAATCAA+TGG 0.428082 7_2:+62850650 None:intergenic
CTCTTTCCAAGTGTTACTGT+TGG 0.447737 7_2:+62852965 None:intergenic
AAGAAGAATATCTCATTGAA+TGG 0.468025 7_2:-62850772 Msa1067910:three_prime_UTR
AAGTGTACTTGCAAAGAGAA+TGG 0.479247 7_2:+62852867 None:intergenic
TGGAATATTCCTTCAGTCCC+TGG 0.492321 7_2:+62852271 None:intergenic
TGTAGTAGTTATCCCGATCA+AGG 0.521543 7_2:+62850680 None:intergenic
TCCACACTGTGGAAAATCCT+TGG 0.530971 7_2:+62852377 None:intergenic
ACAGTGTGGATTCTCAAATA+CGG 0.531828 7_2:-62852364 Msa1067910:CDS
GGACAATGATATGTTACGCC+AGG 0.536196 7_2:-62852289 Msa1067910:CDS
TGGAGAATTGCAGGAACTAG+TGG 0.537216 7_2:-62850978 Msa1067910:CDS
ATAATCATAATAGACATTTG+TGG 0.542828 7_2:+62850844 None:intergenic
ATTATGCTCATGAGCAAATG+AGG 0.554654 7_2:+62850933 None:intergenic
GGAGGATGTGATATCACTGT+TGG 0.558875 7_2:-62852204 Msa1067910:intron
GAGTTGAAGCATGATGTTGT+TGG 0.561932 7_2:+62852840 None:intergenic
GCTGCAGAGGCATATAAGAA+TGG 0.563746 7_2:-62850998 Msa1067910:intron
ATCAGTCTCCTACAAATGCA+AGG 0.575601 7_2:-62850630 Msa1067910:three_prime_UTR
ACAGTGACGAGGTTGTTACA+TGG 0.576288 7_2:+62852817 None:intergenic
ATTGCAGGAACTAGTGGAGA+AGG 0.576931 7_2:-62850972 Msa1067910:CDS
ATAAAACCAACAGTAACACT+TGG 0.577976 7_2:-62852971 Msa1067910:five_prime_UTR
TATGTTACGCCAGGGACTGA+AGG 0.591574 7_2:-62852280 Msa1067910:CDS
ACCAGAACAGCGAATTGTGG+TGG 0.597995 7_2:+62852710 None:intergenic
GACTGAAGGAATATTCCAGT+TGG 0.605067 7_2:-62852266 Msa1067910:CDS
ATATAGAGCTGAGGAAAGGT+AGG 0.606983 7_2:+62852243 None:intergenic
CTTGGAAAGAGAATTGCGAC+TGG 0.611526 7_2:-62852953 Msa1067910:five_prime_UTR
TTTGTTTATGAAGGGTACCA+AGG 0.617643 7_2:-62852394 Msa1067910:CDS
ATCAATATAGAGCTGAGGAA+AGG 0.620513 7_2:+62852239 None:intergenic
ATCATCACTAAGTTATACAA+TGG 0.627423 7_2:-62850912 Msa1067910:three_prime_UTR
CAGTGACGAGGTTGTTACAT+GGG 0.629425 7_2:+62852818 None:intergenic
GACAATGATATGTTACGCCA+GGG 0.633098 7_2:-62852288 Msa1067910:CDS
TCCTGAATTGAAGACCACAT+TGG 0.633554 7_2:-62852445 Msa1067910:CDS
TCTCCATCAATATAGAGCTG+AGG 0.637233 7_2:+62852234 None:intergenic
TGTAACAACTTTATCCAATG+TGG 0.642987 7_2:+62852431 None:intergenic
AGTACCAGAACAGCGAATTG+TGG 0.667307 7_2:+62852707 None:intergenic
AGAACAAGAGATGAACGAGG+TGG 0.681161 7_2:+62852789 None:intergenic
AGGTGGAAGAGACAGTGACG+AGG 0.722890 7_2:+62852806 None:intergenic
TTAAGAACAAGAGATGAACG+AGG 0.769392 7_2:+62852786 None:intergenic
GTATTTGAGAATCCACACTG+TGG 0.816826 7_2:+62852366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATAGTTTTTCT+AGG + chr7_2:62851802-62851821 None:intergenic 10.0%
!!! TTAAGTTTATTTTTTAACAT+CGG - chr7_2:62852510-62852529 Msa1067910:intron 10.0%
!!! TTTTTATTTATAGTTTTTCT+AGG + chr7_2:62851802-62851821 None:intergenic 10.0%
!!! TTAAGTTTATTTTTTAACAT+CGG - chr7_2:62852510-62852529 Msa1067910:intron 10.0%
!!! AAAATAGTTTTGTTTATGAA+GGG - chr7_2:62851196-62851215 Msa1067910:intron 15.0%
!! TAAATCTTCAAAAAATTAGA+AGG + chr7_2:62852141-62852160 None:intergenic 15.0%
!! AATTAAAACCTAAAAAGAAA+TGG - chr7_2:62852170-62852189 Msa1067910:intron 15.0%
!!! ATTTTTTTTTCCAACTTTTA+TGG + chr7_2:62852417-62852436 None:intergenic 15.0%
!!! AAAATAGTTTTGTTTATGAA+GGG - chr7_2:62851196-62851215 Msa1067910:intron 15.0%
!! TAAATCTTCAAAAAATTAGA+AGG + chr7_2:62852141-62852160 None:intergenic 15.0%
!! AATTAAAACCTAAAAAGAAA+TGG - chr7_2:62852170-62852189 Msa1067910:intron 15.0%
!!! ATTTTTTTTTCCAACTTTTA+TGG + chr7_2:62852417-62852436 None:intergenic 15.0%
!! TGAATTGTGTAAAAATTGAA+GGG + chr7_2:62850996-62851015 None:intergenic 20.0%
!! ATATAATCTTATATGCAACT+TGG - chr7_2:62851096-62851115 Msa1067910:intron 20.0%
!! TATAATCTTATATGCAACTT+GGG - chr7_2:62851097-62851116 Msa1067910:intron 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG - chr7_2:62851195-62851214 Msa1067910:intron 20.0%
!!! TTTTGAAACGATAAACATAT+TGG - chr7_2:62851288-62851307 Msa1067910:intron 20.0%
!! TAATGAGTTCGATATAAATA+TGG - chr7_2:62851847-62851866 Msa1067910:intron 20.0%
!! TAGTTATCATGTTAAACTAA+TGG - chr7_2:62852081-62852100 Msa1067910:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG - chr7_2:62852098-62852117 Msa1067910:intron 20.0%
!!! AAATTAGAAGGAAAGTATAT+AGG + chr7_2:62852129-62852148 None:intergenic 20.0%
!! ATAATCATAATAGACATTTG+TGG + chr7_2:62852757-62852776 None:intergenic 20.0%
!! GATTTCACAATTTAAATCAA+TGG + chr7_2:62852951-62852970 None:intergenic 20.0%
!! TGAATTGTGTAAAAATTGAA+GGG + chr7_2:62850996-62851015 None:intergenic 20.0%
!! ATATAATCTTATATGCAACT+TGG - chr7_2:62851096-62851115 Msa1067910:intron 20.0%
!! TATAATCTTATATGCAACTT+GGG - chr7_2:62851097-62851116 Msa1067910:intron 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG - chr7_2:62851195-62851214 Msa1067910:intron 20.0%
!!! TTTTGAAACGATAAACATAT+TGG - chr7_2:62851288-62851307 Msa1067910:intron 20.0%
!! TAATGAGTTCGATATAAATA+TGG - chr7_2:62851847-62851866 Msa1067910:intron 20.0%
!! TAGTTATCATGTTAAACTAA+TGG - chr7_2:62852081-62852100 Msa1067910:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG - chr7_2:62852098-62852117 Msa1067910:intron 20.0%
!!! AAATTAGAAGGAAAGTATAT+AGG + chr7_2:62852129-62852148 None:intergenic 20.0%
!! ATAATCATAATAGACATTTG+TGG + chr7_2:62852757-62852776 None:intergenic 20.0%
!! GATTTCACAATTTAAATCAA+TGG + chr7_2:62852951-62852970 None:intergenic 20.0%
! GTGAATTGTGTAAAAATTGA+AGG + chr7_2:62850997-62851016 None:intergenic 25.0%
! AAATAGACTTAACCCTAAAA+GGG + chr7_2:62851028-62851047 None:intergenic 25.0%
! AAAATAGACTTAACCCTAAA+AGG + chr7_2:62851029-62851048 None:intergenic 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG - chr7_2:62851373-62851392 Msa1067910:intron 25.0%
! ATGAAAATCAGAAATTCAAG+AGG + chr7_2:62851425-62851444 None:intergenic 25.0%
! TTATGTTAACATTATCACCA+AGG + chr7_2:62851498-62851517 None:intergenic 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG + chr7_2:62851555-62851574 None:intergenic 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG - chr7_2:62851936-62851955 Msa1067910:intron 25.0%
! AGCTATGGATAATTAGTAAT+AGG - chr7_2:62851989-62852008 Msa1067910:intron 25.0%
! TTCATATTTACATTTGAGCT+AGG - chr7_2:62852028-62852047 Msa1067910:intron 25.0%
!! AACTCTTTCCATTTCTTTTT+AGG + chr7_2:62852181-62852200 None:intergenic 25.0%
! AAAGATTAATATGTGCAAAC+TGG + chr7_2:62852354-62852373 None:intergenic 25.0%
!! ACTTTTATGGATCAATTACA+AGG + chr7_2:62852404-62852423 None:intergenic 25.0%
! TGTAATTGATCCATAAAAGT+TGG - chr7_2:62852404-62852423 Msa1067910:CDS 25.0%
!! AAAAAAAAATGCTTTCGAGT+AGG - chr7_2:62852427-62852446 Msa1067910:CDS 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG - chr7_2:62852578-62852597 Msa1067910:intron 25.0%
! ATCATCACTAAGTTATACAA+TGG - chr7_2:62852686-62852705 Msa1067910:intron 25.0%
! ATACTACATTGCAATTATTC+TGG - chr7_2:62852791-62852810 Msa1067910:CDS 25.0%
! AAGAAGAATATCTCATTGAA+TGG - chr7_2:62852826-62852845 Msa1067910:CDS 25.0%
!! TTTTGTTAAACTTCCTTGAT+CGG - chr7_2:62852905-62852924 Msa1067910:exon 25.0%
!! TTTTATCAAATCATGGATGA+GGG + chr7_2:62850613-62850632 None:intergenic 25.0%
! GTGAATTGTGTAAAAATTGA+AGG + chr7_2:62850997-62851016 None:intergenic 25.0%
! AAATAGACTTAACCCTAAAA+GGG + chr7_2:62851028-62851047 None:intergenic 25.0%
! AAAATAGACTTAACCCTAAA+AGG + chr7_2:62851029-62851048 None:intergenic 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG - chr7_2:62851373-62851392 Msa1067910:intron 25.0%
! ATGAAAATCAGAAATTCAAG+AGG + chr7_2:62851425-62851444 None:intergenic 25.0%
! TTATGTTAACATTATCACCA+AGG + chr7_2:62851498-62851517 None:intergenic 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG + chr7_2:62851555-62851574 None:intergenic 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG - chr7_2:62851936-62851955 Msa1067910:intron 25.0%
! AGCTATGGATAATTAGTAAT+AGG - chr7_2:62851989-62852008 Msa1067910:intron 25.0%
! TTCATATTTACATTTGAGCT+AGG - chr7_2:62852028-62852047 Msa1067910:intron 25.0%
!! AACTCTTTCCATTTCTTTTT+AGG + chr7_2:62852181-62852200 None:intergenic 25.0%
! AAAGATTAATATGTGCAAAC+TGG + chr7_2:62852354-62852373 None:intergenic 25.0%
!! ACTTTTATGGATCAATTACA+AGG + chr7_2:62852404-62852423 None:intergenic 25.0%
! TGTAATTGATCCATAAAAGT+TGG - chr7_2:62852404-62852423 Msa1067910:CDS 25.0%
!! AAAAAAAAATGCTTTCGAGT+AGG - chr7_2:62852427-62852446 Msa1067910:CDS 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG - chr7_2:62852578-62852597 Msa1067910:intron 25.0%
! ATCATCACTAAGTTATACAA+TGG - chr7_2:62852686-62852705 Msa1067910:intron 25.0%
! ATACTACATTGCAATTATTC+TGG - chr7_2:62852791-62852810 Msa1067910:CDS 25.0%
! AAGAAGAATATCTCATTGAA+TGG - chr7_2:62852826-62852845 Msa1067910:CDS 25.0%
!! TTTTGTTAAACTTCCTTGAT+CGG - chr7_2:62852905-62852924 Msa1067910:exon 25.0%
! GTTTTATCAAATCATGGATG+AGG + chr7_2:62850614-62850633 None:intergenic 30.0%
!!! CTGTTGGTTTTATCAAATCA+TGG + chr7_2:62850620-62850639 None:intergenic 30.0%
ATAAAACCAACAGTAACACT+TGG - chr7_2:62850627-62850646 Msa1067910:three_prime_UTR 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG + chr7_2:62850858-62850877 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG + chr7_2:62850863-62850882 None:intergenic 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG + chr7_2:62850864-62850883 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG + chr7_2:62850981-62851000 None:intergenic 30.0%
ATTGAAGGGTGAAATTGAAA+TGG + chr7_2:62850982-62851001 None:intergenic 30.0%
AATAGACTTAACCCTAAAAG+GGG + chr7_2:62851027-62851046 None:intergenic 30.0%
TGTAACAACTTTATCCAATG+TGG + chr7_2:62851170-62851189 None:intergenic 30.0%
AATACAAAAGTTGACCAGAT+TGG - chr7_2:62852234-62852253 Msa1067910:CDS 30.0%
! ACTTGCATTTAAAACCAATC+TGG + chr7_2:62852251-62852270 None:intergenic 30.0%
AACACGATAGAATATTTGTC+AGG + chr7_2:62852276-62852295 None:intergenic 30.0%
TGACAAATATTCTATCGTGT+TGG - chr7_2:62852275-62852294 Msa1067910:CDS 30.0%
ATATAAGAATGGAGAATTGC+AGG - chr7_2:62852611-62852630 Msa1067910:intron 30.0%
ACTAAGTTATACAATGGCTT+TGG - chr7_2:62852692-62852711 Msa1067910:intron 30.0%
CTAAGTTATACAATGGCTTT+GGG - chr7_2:62852693-62852712 Msa1067910:intron 30.0%
TTTGTTAAACTTCCTTGATC+GGG - chr7_2:62852906-62852925 Msa1067910:exon 30.0%
TTTATCAAATCATGGATGAG+GGG + chr7_2:62850612-62850631 None:intergenic 30.0%
! GTTTTATCAAATCATGGATG+AGG + chr7_2:62850614-62850633 None:intergenic 30.0%
!!! CTGTTGGTTTTATCAAATCA+TGG + chr7_2:62850620-62850639 None:intergenic 30.0%
ATAAAACCAACAGTAACACT+TGG - chr7_2:62850627-62850646 Msa1067910:three_prime_UTR 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG + chr7_2:62850858-62850877 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG + chr7_2:62850863-62850882 None:intergenic 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG + chr7_2:62850864-62850883 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG + chr7_2:62850981-62851000 None:intergenic 30.0%
ATTGAAGGGTGAAATTGAAA+TGG + chr7_2:62850982-62851001 None:intergenic 30.0%
AATAGACTTAACCCTAAAAG+GGG + chr7_2:62851027-62851046 None:intergenic 30.0%
TGTAACAACTTTATCCAATG+TGG + chr7_2:62851170-62851189 None:intergenic 30.0%
AATACAAAAGTTGACCAGAT+TGG - chr7_2:62852234-62852253 Msa1067910:CDS 30.0%
! ACTTGCATTTAAAACCAATC+TGG + chr7_2:62852251-62852270 None:intergenic 30.0%
AACACGATAGAATATTTGTC+AGG + chr7_2:62852276-62852295 None:intergenic 30.0%
TGACAAATATTCTATCGTGT+TGG - chr7_2:62852275-62852294 Msa1067910:CDS 30.0%
ATATAAGAATGGAGAATTGC+AGG - chr7_2:62852611-62852630 Msa1067910:intron 30.0%
ACTAAGTTATACAATGGCTT+TGG - chr7_2:62852692-62852711 Msa1067910:intron 30.0%
CTAAGTTATACAATGGCTTT+GGG - chr7_2:62852693-62852712 Msa1067910:intron 30.0%
TTTGTTAAACTTCCTTGATC+GGG - chr7_2:62852906-62852925 Msa1067910:exon 30.0%
AAGTGTACTTGCAAAGAGAA+TGG + chr7_2:62850734-62850753 None:intergenic 35.0%
TTAAGAACAAGAGATGAACG+AGG + chr7_2:62850815-62850834 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG + chr7_2:62850859-62850878 None:intergenic 35.0%
AATTAAGTGAAAACCCACGA+AGG + chr7_2:62850932-62850951 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG + chr7_2:62850980-62850999 None:intergenic 35.0%
! TTCACAAAAAAGCCCCTTTT+AGG - chr7_2:62851012-62851031 Msa1067910:intron 35.0%
! TCACAAAAAAGCCCCTTTTA+GGG - chr7_2:62851013-62851032 Msa1067910:intron 35.0%
!! TTTGTTTATGAAGGGTACCA+AGG - chr7_2:62851204-62851223 Msa1067910:intron 35.0%
ACAGTGTGGATTCTCAAATA+CGG - chr7_2:62851234-62851253 Msa1067910:intron 35.0%
! ATACGGTTGTGCAAATTTTG+AGG - chr7_2:62851251-62851270 Msa1067910:intron 35.0%
ATCAATATAGAGCTGAGGAA+AGG + chr7_2:62851362-62851381 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG - chr7_2:62851361-62851380 Msa1067910:intron 35.0%
!!! ATTGATGGAGAGTTTTTTGG+AGG - chr7_2:62851376-62851395 Msa1067910:intron 35.0%
TGTCTGTGTGGTACAATATT+TGG - chr7_2:62851454-62851473 Msa1067910:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG + chr7_2:62851480-62851499 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG - chr7_2:62851478-62851497 Msa1067910:intron 35.0%
TGTTGTATGAGACATAGTCT+TGG - chr7_2:62851518-62851537 Msa1067910:intron 35.0%
AACTAAGTGTAGCAGATATG+TGG - chr7_2:62851566-62851585 Msa1067910:intron 35.0%
GATGTGTGGTAAGATTAGAT+GGG - chr7_2:62851600-62851619 Msa1067910:intron 35.0%
ACCTATAGTACAAAAGTTGC+TGG - chr7_2:62851669-62851688 Msa1067910:intron 35.0%
! TCCAGCAACTTTTGTACTAT+AGG + chr7_2:62851673-62851692 None:intergenic 35.0%
TACAAAAGTTGCTGGAAACT+AGG - chr7_2:62851677-62851696 Msa1067910:intron 35.0%
GACCTCTAGATTATGTAGTA+AGG - chr7_2:62851728-62851747 Msa1067910:intron 35.0%
CTCCTTACTACATAATCTAG+AGG + chr7_2:62851733-62851752 None:intergenic 35.0%
AGTAAACATATGAAAGCTGG+AGG + chr7_2:62852454-62852473 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG + chr7_2:62852457-62852476 None:intergenic 35.0%
ATTATGCTCATGAGCAAATG+AGG + chr7_2:62852668-62852687 None:intergenic 35.0%
!! ATACAATGGCTTTGGGATAA+TGG - chr7_2:62852700-62852719 Msa1067910:intron 35.0%
TAAACAGACCTTGCATTTGT+AGG + chr7_2:62852979-62852998 None:intergenic 35.0%
TTATCAAATCATGGATGAGG+GGG + chr7_2:62850611-62850630 None:intergenic 35.0%
AAGTGTACTTGCAAAGAGAA+TGG + chr7_2:62850734-62850753 None:intergenic 35.0%
TTAAGAACAAGAGATGAACG+AGG + chr7_2:62850815-62850834 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG + chr7_2:62850859-62850878 None:intergenic 35.0%
AATTAAGTGAAAACCCACGA+AGG + chr7_2:62850932-62850951 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG + chr7_2:62850980-62850999 None:intergenic 35.0%
! TTCACAAAAAAGCCCCTTTT+AGG - chr7_2:62851012-62851031 Msa1067910:intron 35.0%
! TCACAAAAAAGCCCCTTTTA+GGG - chr7_2:62851013-62851032 Msa1067910:intron 35.0%
!! TTTGTTTATGAAGGGTACCA+AGG - chr7_2:62851204-62851223 Msa1067910:intron 35.0%
ACAGTGTGGATTCTCAAATA+CGG - chr7_2:62851234-62851253 Msa1067910:intron 35.0%
! ATACGGTTGTGCAAATTTTG+AGG - chr7_2:62851251-62851270 Msa1067910:intron 35.0%
ATCAATATAGAGCTGAGGAA+AGG + chr7_2:62851362-62851381 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG - chr7_2:62851361-62851380 Msa1067910:intron 35.0%
!!! ATTGATGGAGAGTTTTTTGG+AGG - chr7_2:62851376-62851395 Msa1067910:intron 35.0%
TGTCTGTGTGGTACAATATT+TGG - chr7_2:62851454-62851473 Msa1067910:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG + chr7_2:62851480-62851499 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG - chr7_2:62851478-62851497 Msa1067910:intron 35.0%
TGTTGTATGAGACATAGTCT+TGG - chr7_2:62851518-62851537 Msa1067910:intron 35.0%
AACTAAGTGTAGCAGATATG+TGG - chr7_2:62851566-62851585 Msa1067910:intron 35.0%
GATGTGTGGTAAGATTAGAT+GGG - chr7_2:62851600-62851619 Msa1067910:intron 35.0%
ACCTATAGTACAAAAGTTGC+TGG - chr7_2:62851669-62851688 Msa1067910:intron 35.0%
! TCCAGCAACTTTTGTACTAT+AGG + chr7_2:62851673-62851692 None:intergenic 35.0%
TACAAAAGTTGCTGGAAACT+AGG - chr7_2:62851677-62851696 Msa1067910:intron 35.0%
GACCTCTAGATTATGTAGTA+AGG - chr7_2:62851728-62851747 Msa1067910:intron 35.0%
CTCCTTACTACATAATCTAG+AGG + chr7_2:62851733-62851752 None:intergenic 35.0%
AGTAAACATATGAAAGCTGG+AGG + chr7_2:62852454-62852473 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG + chr7_2:62852457-62852476 None:intergenic 35.0%
ATTATGCTCATGAGCAAATG+AGG + chr7_2:62852668-62852687 None:intergenic 35.0%
!! ATACAATGGCTTTGGGATAA+TGG - chr7_2:62852700-62852719 Msa1067910:intron 35.0%
TAAACAGACCTTGCATTTGT+AGG + chr7_2:62852979-62852998 None:intergenic 35.0%
! CTCTTTCCAAGTGTTACTGT+TGG + chr7_2:62850636-62850655 None:intergenic 40.0%
GAGTTGAAGCATGATGTTGT+TGG + chr7_2:62850761-62850780 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG + chr7_2:62850853-62850872 None:intergenic 40.0%
AAAACCCACGAAGGAAAAGA+GGG + chr7_2:62850923-62850942 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG + chr7_2:62850979-62850998 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG - chr7_2:62851153-62851172 Msa1067910:intron 40.0%
TCCAATGTGGTCTTCAATTC+AGG + chr7_2:62851157-62851176 None:intergenic 40.0%
GTATTTGAGAATCCACACTG+TGG + chr7_2:62851235-62851254 None:intergenic 40.0%
GACAATGATATGTTACGCCA+GGG - chr7_2:62851310-62851329 Msa1067910:intron 40.0%
GACTGAAGGAATATTCCAGT+TGG - chr7_2:62851332-62851351 Msa1067910:intron 40.0%
ATATAGAGCTGAGGAAAGGT+AGG + chr7_2:62851358-62851377 None:intergenic 40.0%
TCTCCATCAATATAGAGCTG+AGG + chr7_2:62851367-62851386 None:intergenic 40.0%
!! CATACTTGTTTCTGTCTGTG+TGG - chr7_2:62851442-62851461 Msa1067910:intron 40.0%
GGATGTGTGGTAAGATTAGA+TGG - chr7_2:62851599-62851618 Msa1067910:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG - chr7_2:62851692-62851711 Msa1067910:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr7_2:62851744-62851763 Msa1067910:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr7_2:62851916-62851935 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG - chr7_2:62851952-62851971 Msa1067910:intron 40.0%
CATGCTCAAAGATTCCATCA+GGG + chr7_2:62851969-62851988 None:intergenic 40.0%
TCATGCTCAAAGATTCCATC+AGG + chr7_2:62851970-62851989 None:intergenic 40.0%
GAATCTTTGAGCATGAGCTA+TGG - chr7_2:62851974-62851993 Msa1067910:intron 40.0%
GGATCAATTACAAGGAAGCA+AGG + chr7_2:62852396-62852415 None:intergenic 40.0%
TGTAGTAGTTATCCCGATCA+AGG + chr7_2:62852921-62852940 None:intergenic 40.0%
ATCAGTCTCCTACAAATGCA+AGG - chr7_2:62852968-62852987 Msa1067910:five_prime_UTR 40.0%
! CTCTTTCCAAGTGTTACTGT+TGG + chr7_2:62850636-62850655 None:intergenic 40.0%
GAGTTGAAGCATGATGTTGT+TGG + chr7_2:62850761-62850780 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG + chr7_2:62850853-62850872 None:intergenic 40.0%
AAAACCCACGAAGGAAAAGA+GGG + chr7_2:62850923-62850942 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG + chr7_2:62850979-62850998 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG - chr7_2:62851153-62851172 Msa1067910:intron 40.0%
TCCAATGTGGTCTTCAATTC+AGG + chr7_2:62851157-62851176 None:intergenic 40.0%
GTATTTGAGAATCCACACTG+TGG + chr7_2:62851235-62851254 None:intergenic 40.0%
GACAATGATATGTTACGCCA+GGG - chr7_2:62851310-62851329 Msa1067910:intron 40.0%
GACTGAAGGAATATTCCAGT+TGG - chr7_2:62851332-62851351 Msa1067910:intron 40.0%
ATATAGAGCTGAGGAAAGGT+AGG + chr7_2:62851358-62851377 None:intergenic 40.0%
TCTCCATCAATATAGAGCTG+AGG + chr7_2:62851367-62851386 None:intergenic 40.0%
!! CATACTTGTTTCTGTCTGTG+TGG - chr7_2:62851442-62851461 Msa1067910:intron 40.0%
GGATGTGTGGTAAGATTAGA+TGG - chr7_2:62851599-62851618 Msa1067910:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG - chr7_2:62851692-62851711 Msa1067910:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr7_2:62851744-62851763 Msa1067910:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr7_2:62851916-62851935 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG - chr7_2:62851952-62851971 Msa1067910:intron 40.0%
CATGCTCAAAGATTCCATCA+GGG + chr7_2:62851969-62851988 None:intergenic 40.0%
TCATGCTCAAAGATTCCATC+AGG + chr7_2:62851970-62851989 None:intergenic 40.0%
GAATCTTTGAGCATGAGCTA+TGG - chr7_2:62851974-62851993 Msa1067910:intron 40.0%
GGATCAATTACAAGGAAGCA+AGG + chr7_2:62852396-62852415 None:intergenic 40.0%
TGTAGTAGTTATCCCGATCA+AGG + chr7_2:62852921-62852940 None:intergenic 40.0%
ATCAGTCTCCTACAAATGCA+AGG - chr7_2:62852968-62852987 Msa1067910:five_prime_UTR 40.0%
CTTGGAAAGAGAATTGCGAC+TGG - chr7_2:62850645-62850664 Msa1067910:three_prime_UTR 45.0%
CAGTGACGAGGTTGTTACAT+GGG + chr7_2:62850783-62850802 None:intergenic 45.0%
ACAGTGACGAGGTTGTTACA+TGG + chr7_2:62850784-62850803 None:intergenic 45.0%
AGAACAAGAGATGAACGAGG+TGG + chr7_2:62850812-62850831 None:intergenic 45.0%
AGTACCAGAACAGCGAATTG+TGG + chr7_2:62850894-62850913 None:intergenic 45.0%
! TCTACCCTCTTTTCCTTCGT+GGG - chr7_2:62850916-62850935 Msa1067910:three_prime_UTR 45.0%
GAAAACCCACGAAGGAAAAG+AGG + chr7_2:62850924-62850943 None:intergenic 45.0%
! ACCAAGGATTTTCCACAGTG+TGG - chr7_2:62851220-62851239 Msa1067910:intron 45.0%
TCCACACTGTGGAAAATCCT+TGG + chr7_2:62851224-62851243 None:intergenic 45.0%
GGACAATGATATGTTACGCC+AGG - chr7_2:62851309-62851328 Msa1067910:intron 45.0%
TGGAATATTCCTTCAGTCCC+TGG + chr7_2:62851330-62851349 None:intergenic 45.0%
GGAGGATGTGATATCACTGT+TGG - chr7_2:62851394-62851413 Msa1067910:intron 45.0%
CAGATATGTGGATGTTGCGT+TGG - chr7_2:62851578-62851597 Msa1067910:intron 45.0%
GAGAGAGAGAGAGAGAGTTA+GGG - chr7_2:62851642-62851661 Msa1067910:intron 45.0%
AGTTGCTGGAAACTAGGCTT+AGG - chr7_2:62851683-62851702 Msa1067910:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - chr7_2:62851691-62851710 Msa1067910:intron 45.0%
AGTCAAATCACCAGAGACAG+AGG - chr7_2:62851772-62851791 Msa1067910:intron 45.0%
TCTAGGTATTCCTCTGTCTC+TGG + chr7_2:62851785-62851804 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr7_2:62851915-62851934 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr7_2:62851917-62851936 None:intergenic 45.0%
! CACTTTGTTTATGGCTGCAG+AGG - chr7_2:62852587-62852606 Msa1067910:intron 45.0%
! GCTGCAGAGGCATATAAGAA+TGG - chr7_2:62852600-62852619 Msa1067910:intron 45.0%
TGGAGAATTGCAGGAACTAG+TGG - chr7_2:62852620-62852639 Msa1067910:intron 45.0%
ATTGCAGGAACTAGTGGAGA+AGG - chr7_2:62852626-62852645 Msa1067910:intron 45.0%
TCATGAGCAAATGAGGCTTC+AGG + chr7_2:62852661-62852680 None:intergenic 45.0%
CTTGGAAAGAGAATTGCGAC+TGG - chr7_2:62850645-62850664 Msa1067910:three_prime_UTR 45.0%
CAGTGACGAGGTTGTTACAT+GGG + chr7_2:62850783-62850802 None:intergenic 45.0%
ACAGTGACGAGGTTGTTACA+TGG + chr7_2:62850784-62850803 None:intergenic 45.0%
AGAACAAGAGATGAACGAGG+TGG + chr7_2:62850812-62850831 None:intergenic 45.0%
AGTACCAGAACAGCGAATTG+TGG + chr7_2:62850894-62850913 None:intergenic 45.0%
! TCTACCCTCTTTTCCTTCGT+GGG - chr7_2:62850916-62850935 Msa1067910:three_prime_UTR 45.0%
GAAAACCCACGAAGGAAAAG+AGG + chr7_2:62850924-62850943 None:intergenic 45.0%
! ACCAAGGATTTTCCACAGTG+TGG - chr7_2:62851220-62851239 Msa1067910:intron 45.0%
TCCACACTGTGGAAAATCCT+TGG + chr7_2:62851224-62851243 None:intergenic 45.0%
GGACAATGATATGTTACGCC+AGG - chr7_2:62851309-62851328 Msa1067910:intron 45.0%
TGGAATATTCCTTCAGTCCC+TGG + chr7_2:62851330-62851349 None:intergenic 45.0%
GGAGGATGTGATATCACTGT+TGG - chr7_2:62851394-62851413 Msa1067910:intron 45.0%
CAGATATGTGGATGTTGCGT+TGG - chr7_2:62851578-62851597 Msa1067910:intron 45.0%
GAGAGAGAGAGAGAGAGTTA+GGG - chr7_2:62851642-62851661 Msa1067910:intron 45.0%
AGTTGCTGGAAACTAGGCTT+AGG - chr7_2:62851683-62851702 Msa1067910:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - chr7_2:62851691-62851710 Msa1067910:intron 45.0%
AGTCAAATCACCAGAGACAG+AGG - chr7_2:62851772-62851791 Msa1067910:intron 45.0%
TCTAGGTATTCCTCTGTCTC+TGG + chr7_2:62851785-62851804 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr7_2:62851915-62851934 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr7_2:62851917-62851936 None:intergenic 45.0%
! CACTTTGTTTATGGCTGCAG+AGG - chr7_2:62852587-62852606 Msa1067910:intron 45.0%
! GCTGCAGAGGCATATAAGAA+TGG - chr7_2:62852600-62852619 Msa1067910:intron 45.0%
TGGAGAATTGCAGGAACTAG+TGG - chr7_2:62852620-62852639 Msa1067910:intron 45.0%
ATTGCAGGAACTAGTGGAGA+AGG - chr7_2:62852626-62852645 Msa1067910:intron 45.0%
TCATGAGCAAATGAGGCTTC+AGG + chr7_2:62852661-62852680 None:intergenic 45.0%
TCCACCACAATTCGCTGTTC+TGG - chr7_2:62850887-62850906 Msa1067910:three_prime_UTR 50.0%
ACCAGAACAGCGAATTGTGG+TGG + chr7_2:62850891-62850910 None:intergenic 50.0%
! CTCTACCCTCTTTTCCTTCG+TGG - chr7_2:62850915-62850934 Msa1067910:three_prime_UTR 50.0%
TATGTTACGCCAGGGACTGA+AGG - chr7_2:62851318-62851337 Msa1067910:intron 50.0%
TGGATGTTGCGTTGGATGTG+TGG - chr7_2:62851586-62851605 Msa1067910:intron 50.0%
CGAGAGAGAGAGAGAGAGTT+AGG - chr7_2:62851641-62851660 Msa1067910:intron 50.0%
TGCTGGAAACTAGGCTTAGG+TGG - chr7_2:62851686-62851705 Msa1067910:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr7_2:62851911-62851930 None:intergenic 50.0%
TCCACCACAATTCGCTGTTC+TGG - chr7_2:62850887-62850906 Msa1067910:three_prime_UTR 50.0%
ACCAGAACAGCGAATTGTGG+TGG + chr7_2:62850891-62850910 None:intergenic 50.0%
! CTCTACCCTCTTTTCCTTCG+TGG - chr7_2:62850915-62850934 Msa1067910:three_prime_UTR 50.0%
TATGTTACGCCAGGGACTGA+AGG - chr7_2:62851318-62851337 Msa1067910:intron 50.0%
TGGATGTTGCGTTGGATGTG+TGG - chr7_2:62851586-62851605 Msa1067910:intron 50.0%
CGAGAGAGAGAGAGAGAGTT+AGG - chr7_2:62851641-62851660 Msa1067910:intron 50.0%
TGCTGGAAACTAGGCTTAGG+TGG - chr7_2:62851686-62851705 Msa1067910:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr7_2:62851911-62851930 None:intergenic 50.0%
AGGTGGAAGAGACAGTGACG+AGG + chr7_2:62850795-62850814 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG + chr7_2:62851350-62851369 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr7_2:62851903-62851922 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr7_2:62851902-62851921 Msa1067910:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr7_2:62851903-62851922 Msa1067910:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr7_2:62851909-62851928 Msa1067910:intron 55.0%
AGGTGGAAGAGACAGTGACG+AGG + chr7_2:62850795-62850814 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG + chr7_2:62851350-62851369 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr7_2:62851903-62851922 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr7_2:62851902-62851921 Msa1067910:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr7_2:62851903-62851922 Msa1067910:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr7_2:62851909-62851928 Msa1067910:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 62850611 62853009 62850611 ID=Msa1067910;Name=Msa1067910
chr7_2 mRNA 62850611 62853009 62850611 ID=Msa1067910-mRNA-1;Parent=Msa1067910;Name=Msa1067910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|1|1|3|347|175
chr7_2 exon 62850611 62851013 62850611 ID=Msa1067910-mRNA-1:exon:12820;Parent=Msa1067910-mRNA-1
chr7_2 exon 62852205 62852474 62852205 ID=Msa1067910-mRNA-1:exon:12819;Parent=Msa1067910-mRNA-1
chr7_2 exon 62852712 62853009 62852712 ID=Msa1067910-mRNA-1:exon:12818;Parent=Msa1067910-mRNA-1
chr7_2 five_prime_UTR 62852914 62853009 62852914 ID=Msa1067910-mRNA-1:five_prime_utr;Parent=Msa1067910-mRNA-1
chr7_2 CDS 62852712 62852913 62852712 ID=Msa1067910-mRNA-1:cds;Parent=Msa1067910-mRNA-1
chr7_2 CDS 62852205 62852474 62852205 ID=Msa1067910-mRNA-1:cds;Parent=Msa1067910-mRNA-1
chr7_2 CDS 62850958 62851013 62850958 ID=Msa1067910-mRNA-1:cds;Parent=Msa1067910-mRNA-1
chr7_2 three_prime_UTR 62850611 62850957 62850611 ID=Msa1067910-mRNA-1:three_prime_utr;Parent=Msa1067910-mRNA-1
Gene Sequence

>Msa1067910

ATGTCTTTGAGTTCGTGCGTTAAACCATTCTCTTTGCAAGTACACTTGTATCCAACAACATCATGCTTCAACTCCCATGTAACAACCTCGTCACTGTCTCTTCCACCTCGTTCATCTCTTGTTCTTAAACAAAACACTATTTTCCATTCCCAACCCAAAATTCAACTCAAACAACGTTTTTCCACCACAATTCGCTGTTCTGCTTTGACTCCTGAATTGAAGACCACATTGGATAAAGTTGTTACATCAAACAAAATAGTTTTGTTTATGAAGGGTACCAAGGATTTTCCACAGTGTGGATTCTCAAATACGGTTGTGCAAATTTTGAGGTCTTTGAATGCGTCTTTTGAAACGATAAACATATTGGACAATGATATGTTACGCCAGGGACTGAAGGAATATTCCAGTTGGCCTACCTTTCCTCAGCTCTATATTGATGGAGAGTTTTTTGGAGGATGTGATATCACTGTTGAGGCATATAAGAATGGAGAATTGCAGGAACTAGTGGAGAAGGCAATGTGCTCCTGA

Protein sequence

>Msa1067910

MSLSSCVKPFSLQVHLYPTTSCFNSHVTTSSLSLPPRSSLVLKQNTIFHSQPKIQLKQRFSTTIRCSALTPELKTTLDKVVTSNKIVLFMKGTKDFPQCGFSNTVVQILRSLNASFETINILDNDMLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKNGELQELVEKAMCS*