AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577950 MtrunA17_Chr4g0000061 98.004 501 8 1 1 501 1 499 0.0 988
Msa0577950 MtrunA17_Chr2g0319001 28.132 455 276 17 56 496 106 523 2.19e-31 127
Msa0577950 MtrunA17_Chr4g0042131 27.059 425 251 16 88 501 44 420 5.49e-27 113
Msa0577950 MtrunA17_Chr2g0319011 27.044 318 185 14 185 491 27 308 1.21e-19 89.7
Msa0577950 MtrunA17_Chr8g0356471 26.190 462 270 18 58 501 112 520 6.17e-19 89.7
Msa0577950 MtrunA17_Chr5g0432581 22.318 466 293 15 59 490 47 477 1.67e-17 85.1
Msa0577950 MtrunA17_Chr4g0021771 24.138 464 271 18 59 490 83 497 7.54e-17 83.2
Msa0577950 MtrunA17_Chr4g0036021 24.018 433 275 15 83 490 79 482 1.85e-15 79.0
Msa0577950 MtrunA17_Chr8g0373531 22.926 458 300 15 59 490 47 477 2.17e-15 78.6
Msa0577950 MtrunA17_Chr2g0303731 25.856 263 183 7 7 261 1 259 8.84e-15 77.0
Msa0577950 MtrunA17_Chr1g0186831 23.404 517 302 23 30 488 20 500 1.41e-14 76.3
Msa0577950 MtrunA17_Chr8g0390521 24.213 413 240 13 59 440 46 416 5.01e-14 74.3
Msa0577950 MtrunA17_Chr8g0376611 28.372 215 146 5 71 281 2 212 1.69e-13 72.8
Msa0577950 MtrunA17_Chr3g0144361 22.294 462 298 12 59 490 56 486 2.05e-13 72.4
Msa0577950 MtrunA17_Chr7g0250881 26.761 213 135 6 70 272 106 307 2.86e-13 72.0
Msa0577950 MtrunA17_Chr6g0485661 22.388 402 260 11 59 440 86 455 1.52e-12 69.7
Msa0577950 MtrunA17_Chr4g0004821 28.643 199 118 5 70 259 77 260 1.79e-12 69.3
Msa0577950 MtrunA17_Chr1g0213631 29.167 168 115 3 91 255 48 214 2.15e-12 68.9
Msa0577950 MtrunA17_Chr4g0034681 22.936 436 287 14 82 494 81 490 3.85e-12 68.6
Msa0577950 MtrunA17_Chr5g0434231 30.625 160 87 3 71 229 5 141 4.03e-12 64.3
Msa0577950 MtrunA17_Chr6g0486021 27.650 217 132 6 58 264 79 280 5.74e-12 67.8
Msa0577950 MtrunA17_Chr8g0376631 27.638 199 132 7 89 281 87 279 1.00e-11 67.4
Msa0577950 MtrunA17_Chr7g0214451 28.144 167 116 3 89 252 94 259 2.74e-11 65.9
Msa0577950 MtrunA17_Chr7g0259471 26.368 201 143 3 58 257 67 263 3.56e-11 65.5
Msa0577950 MtrunA17_Chr2g0284271 63.636 44 16 0 437 480 1 44 3.68e-11 58.2
Msa0577950 MtrunA17_Chr2g0282031 24.631 203 139 4 59 257 81 273 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577950 AT3G13050.2 66.734 493 159 4 10 497 2 494 0.0 606
Msa0577950 AT3G13050.4 66.734 493 159 4 10 497 2 494 0.0 606
Msa0577950 AT3G13050.1 66.734 493 159 4 10 497 2 494 0.0 606
Msa0577950 AT3G13050.3 66.734 493 159 4 10 497 2 494 0.0 606
Msa0577950 AT3G20660.1 26.007 546 298 20 5 499 24 514 4.43e-32 129
Msa0577950 AT3G18830.1 22.951 427 291 10 82 490 87 493 4.12e-17 84.7
Msa0577950 AT2G16130.1 24.464 466 289 15 59 493 54 487 1.70e-16 82.4
Msa0577950 AT1G67300.2 25.781 384 226 10 70 437 92 432 7.39e-16 80.5
Msa0577950 AT2G16120.1 24.406 463 287 15 59 490 54 484 1.37e-15 79.7
Msa0577950 AT1G73220.1 23.207 474 284 17 53 501 113 531 1.54e-15 79.7
Msa0577950 AT1G67300.1 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa0577950 AT1G67300.3 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa0577950 AT1G67300.6 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa0577950 AT1G67300.7 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa0577950 AT1G67300.4 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa0577950 AT1G67300.5 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa0577950 AT1G79820.3 28.740 254 142 9 70 311 95 321 1.21e-14 76.6
Msa0577950 AT1G79820.2 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa0577950 AT1G79820.1 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa0577950 AT1G79820.4 28.780 205 121 6 70 264 95 284 5.48e-14 74.3
Msa0577950 AT2G20780.1 24.318 440 252 18 82 490 106 495 8.22e-14 74.3
Msa0577950 AT2G20780.2 24.318 440 252 18 82 490 48 437 9.63e-14 73.9
Msa0577950 AT1G79360.1 25.053 475 266 19 58 499 98 515 1.33e-13 73.6
Msa0577950 AT1G79410.1 24.086 465 279 18 54 500 99 507 1.79e-13 73.2
Msa0577950 AT1G76430.1 19.963 536 326 15 30 498 18 517 4.41e-13 72.0
Msa0577950 AT1G16390.1 25.821 457 260 18 58 493 106 504 4.62e-12 68.6
Msa0577950 AT5G43360.1 21.639 476 271 19 30 444 20 454 5.44e-12 68.6
Msa0577950 AT5G16150.2 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0577950 AT5G16150.1 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0577950 AT5G16150.3 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0577950 AT2G18480.1 23.846 390 232 14 82 440 73 428 3.94e-11 65.9

Find 143 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGATTCATTCAACTTTC+TGG 0.128847 4_1:-82320069 Msa0577950:five_prime_UTR
AAGGGTTGACCTTGATAATT+TGG 0.146854 4_1:+82317360 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4_1:-82317351 Msa0577950:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 4_1:-82316041 Msa0577950:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4_1:+82317247 None:intergenic
AAATGAACATGGTTAATTTA+AGG 0.189180 4_1:-82315685 Msa0577950:three_prime_UTR
AAAGGAATGATTTCTAATTT+AGG 0.203260 4_1:-82317415 Msa0577950:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 4_1:+82319468 None:intergenic
CGAAGTTACCTTTGATGATT+TGG 0.234261 4_1:+82315651 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 4_1:+82315982 None:intergenic
CCATTCAAGTATATGGAATA+TGG 0.273352 4_1:+82319958 None:intergenic
GTACGTACCATTCAAGTATA+TGG 0.276122 4_1:+82319951 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4_1:-82319768 Msa0577950:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4_1:-82319438 Msa0577950:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4_1:-82319439 Msa0577950:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 4_1:-82319762 Msa0577950:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 4_1:+82317512 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 4_1:-82317578 Msa0577950:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 4_1:+82316980 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4_1:-82319444 Msa0577950:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 4_1:-82317556 Msa0577950:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 4_1:+82317418 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 4_1:+82316972 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 4_1:+82317607 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 4_1:+82316998 None:intergenic
TTCATTGATTCATTCCAGTT+TGG 0.358871 4_1:+82320124 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 4_1:+82316960 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 4_1:+82317341 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 4_1:+82319369 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 4_1:+82317221 None:intergenic
AATGTGTGCGAACGAATAAT+TGG 0.388296 4_1:+82315773 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4_1:+82319469 None:intergenic
TGTGCACTAGTAATTTGTTC+TGG 0.396713 4_1:+82315882 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4_1:-82317350 Msa0577950:CDS
ATGATGTTACTCTCATTTGT+AGG 0.412623 4_1:-82319678 Msa0577950:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 4_1:-82316005 Msa0577950:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 4_1:+82317361 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 4_1:-82317707 Msa0577950:intron
CACAGTTCTTGAGGAAGAAA+AGG 0.428597 4_1:-82315863 Msa0577950:three_prime_UTR
TCGTTTACGCCGGCATTGGT+TGG 0.434274 4_1:-82319719 Msa0577950:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4_1:-82316137 Msa0577950:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4_1:-82319581 Msa0577950:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4_1:-82319432 Msa0577950:CDS
TCGTCGTCAACTTACCAAAC+TGG 0.447014 4_1:-82320138 None:intergenic
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 4_1:-82316006 Msa0577950:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4_1:+82319654 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 4_1:+82317616 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4_1:-82319546 Msa0577950:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 4_1:+82316999 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 4_1:+82317222 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 4_1:+82317368 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 4_1:+82319587 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 4_1:+82317657 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 4_1:-82319834 Msa0577950:intron
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 4_1:+82315989 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4_1:-82319580 Msa0577950:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 4_1:-82319723 Msa0577950:CDS
AAAAGGAGAGGGAAGAAGTT+CGG 0.496639 4_1:-82315846 Msa0577950:three_prime_UTR
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 4_1:+82317599 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 4_1:+82319710 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 4_1:-82317369 Msa0577950:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4_1:+82317248 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 4_1:-82316983 Msa0577950:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 4_1:-82317607 Msa0577950:CDS
CCATATTCCATATACTTGAA+TGG 0.516463 4_1:-82319958 Msa0577950:intron
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 4_1:-82319703 Msa0577950:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4_1:-82316134 Msa0577950:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 4_1:+82317694 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4_1:-82319381 Msa0577950:CDS
TGAACATGGTTAATTTAAGG+AGG 0.535787 4_1:-82315682 Msa0577950:three_prime_UTR
GCTACTGTTACTGCTACTGC+CGG 0.538066 4_1:-82319510 Msa0577950:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 4_1:+82317656 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 4_1:+82315999 None:intergenic
TTACTAGTGCACAGTTCTTG+AGG 0.540007 4_1:-82315872 Msa0577950:three_prime_UTR
TATGAAACTTTCTTGATGAG+AGG 0.540801 4_1:+82319626 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4_1:-82319374 Msa0577950:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4_1:-82316146 Msa0577950:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 4_1:+82317469 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4_1:-82319435 Msa0577950:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 4_1:+82317652 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4_1:-82316117 Msa0577950:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 4_1:-82316107 Msa0577950:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 4_1:+82319356 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 4_1:+82317005 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 4_1:-82317433 Msa0577950:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 4_1:-82317412 Msa0577950:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 4_1:+82317072 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4_1:+82316151 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4_1:+82319375 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 4_1:-82316108 Msa0577950:CDS
CAATGAAAATAAAATGAACA+TGG 0.569553 4_1:-82315696 Msa0577950:three_prime_UTR
CTCCCAAACCAAGACCAACA+AGG 0.572336 4_1:+82319436 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4_1:+82319408 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 4_1:-82317073 Msa0577950:CDS
GAACATGGTTAATTTAAGGA+GGG 0.576006 4_1:-82315681 Msa0577950:three_prime_UTR
GAGCTACAATTACAAACAGA+AGG 0.576404 4_1:+82316051 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4_1:-82319819 Msa0577950:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 4_1:-82317706 Msa0577950:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 4_1:+82317091 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4_1:+82319631 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 4_1:+82317651 None:intergenic
AATCATCAAAGGTAACTTCG+AGG 0.583187 4_1:-82315648 Msa0577950:three_prime_UTR
TCCCAAACCAAGACCAACAA+GGG 0.583537 4_1:+82319437 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 4_1:-82317083 Msa0577950:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 4_1:-82317696 Msa0577950:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 4_1:-82319579 Msa0577950:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 4_1:+82316101 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4_1:-82316147 Msa0577950:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4_1:-82319656 Msa0577950:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4_1:-82316170 Msa0577950:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 4_1:-82317223 Msa0577950:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4_1:+82316169 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4_1:-82319413 Msa0577950:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4_1:-82319554 Msa0577950:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 4_1:+82317083 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 4_1:-82319370 Msa0577950:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4_1:+82317293 None:intergenic
GCAAGTAGCCAAATCATCAA+AGG 0.614035 4_1:-82315659 Msa0577950:three_prime_UTR
TCTTGAGGAAGAAAAGGAGA+GGG 0.618954 4_1:-82315857 Msa0577950:three_prime_UTR
ATTGTCAGAAATAAGGACAC+CGG 0.619613 4_1:+82317519 None:intergenic
TTCTTGAGGAAGAAAAGGAG+AGG 0.623780 4_1:-82315858 Msa0577950:three_prime_UTR
TGACAACCCTTCAGAAGACA+CGG 0.630940 4_1:-82317476 Msa0577950:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4_1:-82316164 Msa0577950:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4_1:-82319558 Msa0577950:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 4_1:-82317239 Msa0577950:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4_1:+82316170 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4_1:+82317342 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 4_1:+82317470 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 4_1:+82317523 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 4_1:-82317702 Msa0577950:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 4_1:-82316095 Msa0577950:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4_1:+82319374 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 4_1:-82319833 Msa0577950:intron
ATAAATATACACGATTGTGA+AGG 0.658702 4_1:+82316925 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 4_1:-82319729 Msa0577950:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 4_1:+82316154 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 4_1:-82316915 Msa0577950:intron
TCATCATGTCTACACATCGT+CGG 0.680005 4_1:+82315944 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 4_1:-82316984 Msa0577950:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 4_1:+82319470 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 4_1:-82319832 Msa0577950:intron
GCATAAAGACATTACCTCTG+GGG 0.717940 4_1:+82316901 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4_1:+82319398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGA+TGG - chr4_1:82316575-82316594 Msa0577950:intron 10.0%
!! TATAAGAAAAGATAGAAATA+TGG - chr4_1:82316717-82316736 Msa0577950:intron 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + chr4_1:82317574-82317593 None:intergenic 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + chr4_1:82317648-82317667 None:intergenic 15.0%
!! TTTACAACTATTTAAATTGA+GGG + chr4_1:82317735-82317754 None:intergenic 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - chr4_1:82317735-82317754 Msa0577950:intron 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - chr4_1:82318910-82318929 Msa0577950:intron 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + chr4_1:82319316-82319335 None:intergenic 15.0%
!! AGAAAAAATAAAGCAAATTA+TGG - chr4_1:82319316-82319335 Msa0577950:CDS 15.0%
!!! TTTTTTTTAGTAAATTGTAG+AGG - chr4_1:82320051-82320070 Msa0577950:five_prime_UTR 15.0%
!!! TTTTTTTAGTAAATTGTAGA+GGG - chr4_1:82320052-82320071 Msa0577950:five_prime_UTR 15.0%
!! AATACATTATTATAGATGAC+AGG - chr4_1:82315946-82315965 Msa0577950:exon 20.0%
!! ATACATTATTATAGATGACA+GGG - chr4_1:82315947-82315966 Msa0577950:exon 20.0%
!! ATATATAATTGAAAAGATGG+TGG - chr4_1:82316578-82316597 Msa0577950:intron 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + chr4_1:82316709-82316728 None:intergenic 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - chr4_1:82317099-82317118 Msa0577950:CDS 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + chr4_1:82317639-82317658 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + chr4_1:82317640-82317659 None:intergenic 20.0%
!! GTTTACAACTATTTAAATTG+AGG + chr4_1:82317736-82317755 None:intergenic 20.0%
!!! TATACATTACTTAAGTCTTT+TGG + chr4_1:82317822-82317841 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + chr4_1:82318365-82318384 None:intergenic 20.0%
!! AAAGGAATGATTTCTAATTT+AGG - chr4_1:82318365-82318384 Msa0577950:intron 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + chr4_1:82319058-82319077 None:intergenic 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - chr4_1:82319094-82319113 Msa0577950:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - chr4_1:82319095-82319114 Msa0577950:intron 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - chr4_1:82319096-82319115 Msa0577950:intron 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - chr4_1:82319224-82319243 Msa0577950:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - chr4_1:82319544-82319563 Msa0577950:CDS 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - chr4_1:82319547-82319566 Msa0577950:CDS 20.0%
!!! TTTTTTAGTAAATTGTAGAG+GGG - chr4_1:82320053-82320072 Msa0577950:five_prime_UTR 20.0%
!! CAATGAAAATAAAATGAACA+TGG - chr4_1:82320084-82320103 Msa0577950:five_prime_UTR 20.0%
!! AAATGAACATGGTTAATTTA+AGG - chr4_1:82320095-82320114 Msa0577950:five_prime_UTR 20.0%
! TATAGATTCATTCAACTTTC+TGG - chr4_1:82315711-82315730 Msa0577950:three_prime_UTR 25.0%
! TACATTATTATAGATGACAG+GGG - chr4_1:82315948-82315967 Msa0577950:exon 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - chr4_1:82317042-82317061 Msa0577950:CDS 25.0%
! AAGTATGTAAGGAAAGAATA+CGG - chr4_1:82317053-82317072 Msa0577950:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - chr4_1:82317098-82317117 Msa0577950:CDS 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - chr4_1:82317100-82317119 Msa0577950:intron 25.0%
! AAATAAAGGCTTAAGCAAAT+TGG + chr4_1:82317560-82317579 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - chr4_1:82317578-82317597 Msa0577950:CDS 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + chr4_1:82317705-82317724 None:intergenic 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + chr4_1:82318142-82318161 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + chr4_1:82318271-82318290 None:intergenic 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + chr4_1:82318340-82318359 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - chr4_1:82318464-82318483 Msa0577950:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + chr4_1:82318858-82318877 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG + chr4_1:82318992-82319011 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - chr4_1:82319020-82319039 Msa0577950:intron 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + chr4_1:82319053-82319072 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - chr4_1:82319170-82319189 Msa0577950:intron 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + chr4_1:82319235-82319254 None:intergenic 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + chr4_1:82319352-82319371 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG + chr4_1:82319405-82319424 None:intergenic 25.0%
! TAATTCAAAAACAATGAGGT+AGG + chr4_1:82319406-82319425 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + chr4_1:82319410-82319429 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - chr4_1:82319440-82319459 Msa0577950:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + chr4_1:82319471-82319490 None:intergenic 25.0%
!! ACACATTCTTTTTATGTGTT+TGG - chr4_1:82320023-82320042 Msa0577950:five_prime_UTR 25.0%
!! TTCATTGATTCATTCCAGTT+TGG + chr4_1:82315659-82315678 None:intergenic 30.0%
CCATTCAAGTATATGGAATA+TGG + chr4_1:82315825-82315844 None:intergenic 30.0%
CCATATTCCATATACTTGAA+TGG - chr4_1:82315822-82315841 Msa0577950:three_prime_UTR 30.0%
GATGAAGCTCTTATAACATT+AGG - chr4_1:82316012-82316031 Msa0577950:CDS 30.0%
! GCTCTTATAACATTAGGTTT+TGG - chr4_1:82316018-82316037 Msa0577950:CDS 30.0%
ATGATGTTACTCTCATTTGT+AGG - chr4_1:82316102-82316121 Msa0577950:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + chr4_1:82316157-82316176 None:intergenic 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG - chr4_1:82316174-82316193 Msa0577950:CDS 30.0%
!! TTGAAAAGATGGTGGAAATT+AGG - chr4_1:82316586-82316605 Msa0577950:intron 30.0%
!! TGAAAAGATGGTGGAAATTA+GGG - chr4_1:82316587-82316606 Msa0577950:intron 30.0%
AAATTAGGGTTAAGTGGTTT+GGG - chr4_1:82316601-82316620 Msa0577950:intron 30.0%
AGTCAAATCACTATTTACAG+AGG - chr4_1:82316679-82316698 Msa0577950:intron 30.0%
! GTCTCATTTTGTTACATTTG+CGG + chr4_1:82316965-82316984 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - chr4_1:82316970-82316989 Msa0577950:CDS 30.0%
AGTTGGTTAGTATTTAGATG+AGG - chr4_1:82316993-82317012 Msa0577950:CDS 30.0%
AATATAGTGAGTAGTGAGAT+AGG - chr4_1:82317018-82317037 Msa0577950:CDS 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - chr4_1:82317171-82317190 Msa0577950:intron 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - chr4_1:82317239-82317258 Msa0577950:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + chr4_1:82317403-82317422 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - chr4_1:82317401-82317420 Msa0577950:CDS 30.0%
GGCTAAATGATGAAAGTAAA+TGG + chr4_1:82317900-82317919 None:intergenic 30.0%
TTACTTTCATCATTTAGCCT+AGG - chr4_1:82317901-82317920 Msa0577950:intron 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - chr4_1:82317930-82317949 Msa0577950:intron 30.0%
TGACAAATCATAGAGATGAT+GGG - chr4_1:82318028-82318047 Msa0577950:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + chr4_1:82318339-82318358 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + chr4_1:82318341-82318360 None:intergenic 30.0%
GGAATGATTTCTAATTTAGG+TGG - chr4_1:82318368-82318387 Msa0577950:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + chr4_1:82318504-82318523 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - chr4_1:82318581-82318600 Msa0577950:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG - chr4_1:82318627-82318646 Msa0577950:intron 30.0%
AAACAAATGCAAACTATACC+TGG - chr4_1:82319367-82319386 Msa0577950:CDS 30.0%
!! TGATGACGTTTTATATACCT+CGG - chr4_1:82319853-82319872 Msa0577950:intron 30.0%
!! TTTTCATGATTTAAAGTCCG+AGG + chr4_1:82319873-82319892 None:intergenic 30.0%
TGAACATGGTTAATTTAAGG+AGG - chr4_1:82320098-82320117 Msa0577950:five_prime_UTR 30.0%
GAACATGGTTAATTTAAGGA+GGG - chr4_1:82320099-82320118 Msa0577950:five_prime_UTR 30.0%
GTACGTACCATTCAAGTATA+TGG + chr4_1:82315832-82315851 None:intergenic 35.0%
ATCTCAAATCGAATCGAAGA+TGG + chr4_1:82315911-82315930 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + chr4_1:82316152-82316171 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG - chr4_1:82316186-82316205 Msa0577950:intron 35.0%
GTAAGCACCAATTAACATTC+CGG + chr4_1:82316196-82316215 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - chr4_1:82316199-82316218 Msa0577950:intron 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - chr4_1:82316200-82316219 Msa0577950:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - chr4_1:82316201-82316220 Msa0577950:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - chr4_1:82316226-82316245 Msa0577950:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + chr4_1:82316292-82316311 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + chr4_1:82316313-82316332 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + chr4_1:82316314-82316333 None:intergenic 35.0%
ACAAGCAAGGAGACATAATT+TGG + chr4_1:82316315-82316334 None:intergenic 35.0%
AACAAATTCAAGAAACCACG+AGG + chr4_1:82316385-82316404 None:intergenic 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - chr4_1:82316466-82316485 Msa0577950:intron 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - chr4_1:82316467-82316486 Msa0577950:intron 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - chr4_1:82316600-82316619 Msa0577950:intron 35.0%
ATCGTGTATCATTGTAACAG+AGG + chr4_1:82316868-82316887 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - chr4_1:82316914-82316933 Msa0577950:intron 35.0%
! TCATTTTGTTACATTTGCGG+AGG + chr4_1:82316962-82316981 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - chr4_1:82316976-82316995 Msa0577950:CDS 35.0%
AATACGGATCTCTTGAATCA+AGG - chr4_1:82317069-82317088 Msa0577950:CDS 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + chr4_1:82317134-82317153 None:intergenic 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - chr4_1:82317132-82317151 Msa0577950:intron 35.0%
GCAATATCGCCTTGATATTA+AGG - chr4_1:82317160-82317179 Msa0577950:intron 35.0%
CAGACAAAGCCTTAATATCA+AGG + chr4_1:82317172-82317191 None:intergenic 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - chr4_1:82317170-82317189 Msa0577950:intron 35.0%
ACCAAAACCCTTCAATATGT+AGG - chr4_1:82317262-82317281 Msa0577950:CDS 35.0%
! TCCTACATATTGAAGGGTTT+TGG + chr4_1:82317266-82317285 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + chr4_1:82317272-82317291 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + chr4_1:82317273-82317292 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - chr4_1:82317276-82317295 Msa0577950:CDS 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + chr4_1:82317398-82317417 None:intergenic 35.0%
! CTACTAGTTTAACTGCAAAC+TGG + chr4_1:82317491-82317510 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - chr4_1:82317586-82317605 Msa0577950:CDS 35.0%
TTCTTGCATGAAGGAATGAT+AGG + chr4_1:82317696-82317715 None:intergenic 35.0%
! GTTAATTGTTGGCTACACAT+AGG + chr4_1:82317797-82317816 None:intergenic 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG + chr4_1:82317808-82317827 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - chr4_1:82317913-82317932 Msa0577950:intron 35.0%
TAAAGCCATAACAGTTTCCT+AGG + chr4_1:82317921-82317940 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + chr4_1:82318029-82318048 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - chr4_1:82318027-82318046 Msa0577950:intron 35.0%
AACAGAAGAAGGAAAGATGT+GGG + chr4_1:82318131-82318150 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + chr4_1:82318132-82318151 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + chr4_1:82318184-82318203 None:intergenic 35.0%
! AACTGAAGCAACTAACGTTT+TGG - chr4_1:82318202-82318221 Msa0577950:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - chr4_1:82318224-82318243 Msa0577950:intron 35.0%
AATGGCAAAAAACTTCCTTC+CGG - chr4_1:82318242-82318261 Msa0577950:intron 35.0%
ATTGTCAGAAATAAGGACAC+CGG + chr4_1:82318264-82318283 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - chr4_1:82318347-82318366 Msa0577950:intron 35.0%
TCCTTTCACCCAAATTATCA+AGG - chr4_1:82318411-82318430 Msa0577950:intron 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + chr4_1:82318415-82318434 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + chr4_1:82318422-82318441 None:intergenic 35.0%
! AAGGGTTGACCTTGATAATT+TGG + chr4_1:82318423-82318442 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - chr4_1:82318430-82318449 Msa0577950:intron 35.0%
AAACACTGCCCATAATAGAA+GGG + chr4_1:82318441-82318460 None:intergenic 35.0%
AAAACACTGCCCATAATAGA+AGG + chr4_1:82318442-82318461 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - chr4_1:82318443-82318462 Msa0577950:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + chr4_1:82318535-82318554 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + chr4_1:82318536-82318555 None:intergenic 35.0%
ACCTTTGTAACTTACATCCT+GGG + chr4_1:82318561-82318580 None:intergenic 35.0%
! TGTTTTACTATACCATTCCC+GGG - chr4_1:82318628-82318647 Msa0577950:intron 35.0%
GATAGAATGTTAATGGGAGA+AGG + chr4_1:82318778-82318797 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + chr4_1:82318784-82318803 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + chr4_1:82318785-82318804 None:intergenic 35.0%
ATATGCGAGCTCCAAATAAA+AGG + chr4_1:82318823-82318842 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + chr4_1:82318883-82318902 None:intergenic 35.0%
TTGCATAAAGACATTACCTC+TGG + chr4_1:82318884-82318903 None:intergenic 35.0%
GAGAAATCTTGTGCATTCTT+CGG - chr4_1:82318951-82318970 Msa0577950:intron 35.0%
CACAGAGAACTAACTTTGTA+AGG + chr4_1:82319274-82319293 None:intergenic 35.0%
CTTTCGTCATGTATAAGACA+TGG - chr4_1:82319501-82319520 Msa0577950:CDS 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - chr4_1:82319522-82319541 Msa0577950:CDS 35.0%
GAGCTACAATTACAAACAGA+AGG + chr4_1:82319732-82319751 None:intergenic 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - chr4_1:82319739-82319758 Msa0577950:CDS 35.0%
!! TGTGCACTAGTAATTTGTTC+TGG + chr4_1:82319901-82319920 None:intergenic 35.0%
AATGTGTGCGAACGAATAAT+TGG + chr4_1:82320010-82320029 None:intergenic 35.0%
! CGAAGTTACCTTTGATGATT+TGG + chr4_1:82320132-82320151 None:intergenic 35.0%
AATCATCAAAGGTAACTTCG+AGG - chr4_1:82320132-82320151 Msa0577950:five_prime_UTR 35.0%
!! TTCTGAAATCCAACCAATGC+CGG + chr4_1:82316073-82316092 None:intergenic 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - chr4_1:82316077-82316096 Msa0577950:CDS 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - chr4_1:82316222-82316241 Msa0577950:intron 40.0%
GATCAACATGGAAGGAGAAA+AGG - chr4_1:82316234-82316253 Msa0577950:intron 40.0%
AAGGGAACGAAAAACAAGCA+AGG + chr4_1:82316328-82316347 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - chr4_1:82316330-82316349 Msa0577950:intron 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG - chr4_1:82316430-82316449 Msa0577950:intron 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - chr4_1:82316438-82316457 Msa0577950:intron 40.0%
TGTACCAACAGTCCAAAAAC+CGG + chr4_1:82316445-82316464 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - chr4_1:82316595-82316614 Msa0577950:intron 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG + chr4_1:82316788-82316807 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + chr4_1:82316859-82316878 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + chr4_1:82316913-82316932 None:intergenic 40.0%
TCTACACTAGGAGAGAAAAG+AGG - chr4_1:82316926-82316945 Msa0577950:CDS 40.0%
GGATCTCTTGAATCAAGGAA+AGG - chr4_1:82317074-82317093 Msa0577950:CDS 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - chr4_1:82317128-82317147 Msa0577950:intron 40.0%
ATATTGCACTCACCTTCCTT+TGG + chr4_1:82317147-82317166 None:intergenic 40.0%
AAAAACCTCCACACAAGATG+GGG + chr4_1:82317229-82317248 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + chr4_1:82317230-82317249 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + chr4_1:82317231-82317250 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - chr4_1:82317289-82317308 Msa0577950:CDS 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + chr4_1:82317448-82317467 None:intergenic 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + chr4_1:82317452-82317471 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + chr4_1:82317470-82317489 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + chr4_1:82317598-82317617 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - chr4_1:82317598-82317617 Msa0577950:CDS 40.0%
TGCATGAAGGAATGATAGGA+AGG + chr4_1:82317692-82317711 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG + chr4_1:82317793-82317812 None:intergenic 40.0%
TCTGCAAGGAACATTGCATT+GGG + chr4_1:82318058-82318077 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + chr4_1:82318059-82318078 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + chr4_1:82318126-82318145 None:intergenic 40.0%
CCTTTCAAGCATAGGTATCT+TGG + chr4_1:82318176-82318195 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - chr4_1:82318173-82318192 Msa0577950:intron 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + chr4_1:82318313-82318332 None:intergenic 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + chr4_1:82318314-82318333 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - chr4_1:82318429-82318448 Msa0577950:intron 40.0%
TCCCAGGATGTAAGTTACAA+AGG - chr4_1:82318557-82318576 Msa0577950:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + chr4_1:82318562-82318581 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + chr4_1:82318643-82318662 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + chr4_1:82318648-82318667 None:intergenic 40.0%
GGCATCAATCATACATTTCC+CGG + chr4_1:82318649-82318668 None:intergenic 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + chr4_1:82318670-82318689 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + chr4_1:82318711-82318730 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + chr4_1:82318811-82318830 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - chr4_1:82318809-82318828 Msa0577950:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + chr4_1:82318882-82318901 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + chr4_1:82319388-82319407 None:intergenic 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + chr4_1:82319450-82319469 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - chr4_1:82319461-82319480 Msa0577950:CDS 40.0%
TGGTGGAATGTTATGTCCAT+TGG - chr4_1:82319663-82319682 Msa0577950:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - chr4_1:82319673-82319692 Msa0577950:CDS 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - chr4_1:82319775-82319794 Msa0577950:CDS 40.0%
ACACAGTATCTTGCAGTTCT+TGG + chr4_1:82319801-82319820 None:intergenic 40.0%
TCATCATGTCTACACATCGT+CGG + chr4_1:82319839-82319858 None:intergenic 40.0%
TTACTAGTGCACAGTTCTTG+AGG - chr4_1:82319908-82319927 Msa0577950:intron 40.0%
CACAGTTCTTGAGGAAGAAA+AGG - chr4_1:82319917-82319936 Msa0577950:intron 40.0%
TTCTTGAGGAAGAAAAGGAG+AGG - chr4_1:82319922-82319941 Msa0577950:intron 40.0%
TCTTGAGGAAGAAAAGGAGA+GGG - chr4_1:82319923-82319942 Msa0577950:intron 40.0%
AAAAGGAGAGGGAAGAAGTT+CGG - chr4_1:82319934-82319953 Msa0577950:intron 40.0%
GCAAGTAGCCAAATCATCAA+AGG - chr4_1:82320121-82320140 Msa0577950:five_prime_UTR 40.0%
ATGACAGGGGAAGAAGTTGA+AGG - chr4_1:82315961-82315980 Msa0577950:CDS 45.0%
ATACTCGTTCTCGTTTACGC+CGG - chr4_1:82316051-82316070 Msa0577950:CDS 45.0%
TTCCATGCAGATTGAACTGC+AGG + chr4_1:82316129-82316148 None:intergenic 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - chr4_1:82316336-82316355 Msa0577950:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - chr4_1:82316341-82316360 Msa0577950:intron 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - chr4_1:82316342-82316361 Msa0577950:intron 45.0%
TCCCAAACCAAGACCAACAA+GGG + chr4_1:82316346-82316365 None:intergenic 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - chr4_1:82316399-82316418 Msa0577950:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - chr4_1:82316410-82316429 Msa0577950:intron 45.0%
ACCATCCAGGTACCTCTATT+AGG + chr4_1:82316414-82316433 None:intergenic 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG - chr4_1:82316423-82316442 Msa0577950:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - chr4_1:82316651-82316670 Msa0577950:intron 45.0%
TTTATCGCACCAAGTGGAGT+CGG + chr4_1:82316782-82316801 None:intergenic 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - chr4_1:82317178-82317197 Msa0577950:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - chr4_1:82317183-82317202 Msa0577950:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - chr4_1:82317188-82317207 Msa0577950:intron 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - chr4_1:82317194-82317213 Msa0577950:intron 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - chr4_1:82317195-82317214 Msa0577950:intron 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - chr4_1:82317196-82317215 Msa0577950:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - chr4_1:82317279-82317298 Msa0577950:CDS 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - chr4_1:82317288-82317307 Msa0577950:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + chr4_1:82317443-82317462 None:intergenic 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + chr4_1:82317449-82317468 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - chr4_1:82317607-82317626 Msa0577950:CDS 45.0%
TCTTGGCATCACAATCTGCA+AGG + chr4_1:82318072-82318091 None:intergenic 45.0%
CAGATTGTGATGCCAAGACT+GGG - chr4_1:82318074-82318093 Msa0577950:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + chr4_1:82318127-82318146 None:intergenic 45.0%
! CATAGGTATCTTGGTGACTC+TGG + chr4_1:82318167-82318186 None:intergenic 45.0%
TCAGAAATAAGGACACCGGA+AGG + chr4_1:82318260-82318279 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - chr4_1:82318304-82318323 Msa0577950:intron 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + chr4_1:82318490-82318509 None:intergenic 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - chr4_1:82318671-82318690 Msa0577950:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - chr4_1:82318672-82318691 Msa0577950:intron 45.0%
TCTGCCTGAAGACCTAACAA+CGG - chr4_1:82318796-82318815 Msa0577950:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - chr4_1:82318865-82318884 Msa0577950:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - chr4_1:82319672-82319691 Msa0577950:CDS 45.0%
ACTAAACCCACTGCTACCAA+TGG + chr4_1:82319682-82319701 None:intergenic 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG - chr4_1:82319685-82319704 Msa0577950:CDS 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - chr4_1:82319774-82319793 Msa0577950:CDS 45.0%
GTCCTGCAGTTCAATCTGCA+TGG - chr4_1:82316124-82316143 Msa0577950:CDS 50.0%
GCTACTGTTACTGCTACTGC+CGG - chr4_1:82316270-82316289 Msa0577950:intron 50.0%
CTCCCAAACCAAGACCAACA+AGG + chr4_1:82316347-82316366 None:intergenic 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - chr4_1:82316345-82316364 Msa0577950:intron 50.0%
AGAAACCACGAGGACAAGAC+AGG + chr4_1:82316375-82316394 None:intergenic 50.0%
CAGGTACCTCTATTAGGAGC+GGG + chr4_1:82316408-82316427 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + chr4_1:82316409-82316428 None:intergenic 50.0%
ACCGGAAAACACAACCATCC+AGG + chr4_1:82316427-82316446 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + chr4_1:82316827-82316846 None:intergenic 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - chr4_1:82317187-82317206 Msa0577950:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - chr4_1:82317189-82317208 Msa0577950:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG - chr4_1:82317218-82317237 Msa0577950:CDS 50.0%
TAGATCCCCATCTTGTGTGG+AGG - chr4_1:82317221-82317240 Msa0577950:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + chr4_1:82317438-82317457 None:intergenic 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + chr4_1:82317439-82317458 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + chr4_1:82317440-82317459 None:intergenic 50.0%
GGCTACACATAGGAAGGAAG+TGG + chr4_1:82317787-82317806 None:intergenic 50.0%
GCAGATTGTGATGCCAAGAC+TGG - chr4_1:82318073-82318092 Msa0577950:intron 50.0%
TTGTGATGCCAAGACTGGGT+TGG - chr4_1:82318078-82318097 Msa0577950:intron 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - chr4_1:82318541-82318560 Msa0577950:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - chr4_1:82318707-82318726 Msa0577950:intron 50.0%
CTGCCTGAAGACCTAACAAC+GGG - chr4_1:82318797-82318816 Msa0577950:intron 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - chr4_1:82319643-82319662 Msa0577950:CDS 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - chr4_1:82319646-82319665 Msa0577950:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + chr4_1:82319784-82319803 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + chr4_1:82319794-82319813 None:intergenic 50.0%
GTTCTCGTTTACGCCGGCAT+TGG - chr4_1:82316057-82316076 Msa0577950:CDS 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - chr4_1:82316061-82316080 Msa0577950:CDS 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - chr4_1:82316348-82316367 Msa0577950:intron 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - chr4_1:82316406-82316425 Msa0577950:intron 55.0%
! TCCATGTAGCCGACTCCACT+TGG - chr4_1:82316770-82316789 Msa0577950:intron 55.0%
ACCAAGTGGAGTCGGCTACA+TGG + chr4_1:82316774-82316793 None:intergenic 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - chr4_1:82318084-82318103 Msa0577950:intron 55.0%
AGCCATCTCCAACCCAGTCT+TGG + chr4_1:82318089-82318108 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + chr4_1:82318803-82318822 None:intergenic 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + chr4_1:82319613-82319632 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - chr4_1:82319610-82319629 Msa0577950:CDS 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + chr4_1:82319614-82319633 None:intergenic 55.0%
TCAGTCAGAACCACCGGTGT+CGG - chr4_1:82319616-82319635 Msa0577950:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + chr4_1:82318700-82318719 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - chr4_1:82318697-82318716 Msa0577950:intron 60.0%
TGAGCTTGCGACTCCGACAC+CGG + chr4_1:82319632-82319651 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - chr4_1:82319633-82319652 Msa0577950:CDS 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - chr4_1:82319634-82319653 Msa0577950:CDS 60.0%
GCGGTCCTGTCTTGTCCTCG+TGG - chr4_1:82316367-82316386 Msa0577950:intron 65.0%
ACGGCTGACAAGAGGAGCCC+AGG + chr4_1:82318692-82318711 None:intergenic 65.0%
GCTTGCGACTCCGACACCGG+TGG + chr4_1:82319629-82319648 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82315646 82320156 82315646 ID=Msa0577950;Name=Msa0577950
chr4_1 mRNA 82315646 82320156 82315646 ID=Msa0577950-mRNA-1;Parent=Msa0577950;Name=Msa0577950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=195|1|1|1|0.75|0.8|5|307|501
chr4_1 exon 82315646 82316198 82315646 ID=Msa0577950-mRNA-1:exon:29803;Parent=Msa0577950-mRNA-1
chr4_1 exon 82316916 82317118 82316916 ID=Msa0577950-mRNA-1:exon:29802;Parent=Msa0577950-mRNA-1
chr4_1 exon 82317200 82317725 82317200 ID=Msa0577950-mRNA-1:exon:29801;Parent=Msa0577950-mRNA-1
chr4_1 exon 82319314 82319841 82319314 ID=Msa0577950-mRNA-1:exon:29800;Parent=Msa0577950-mRNA-1
chr4_1 exon 82319959 82320156 82319959 ID=Msa0577950-mRNA-1:exon:29799;Parent=Msa0577950-mRNA-1
chr4_1 five_prime_UTR 82319962 82320156 82319962 ID=Msa0577950-mRNA-1:five_prime_utr;Parent=Msa0577950-mRNA-1
chr4_1 CDS 82319959 82319961 82319959 ID=Msa0577950-mRNA-1:cds;Parent=Msa0577950-mRNA-1
chr4_1 CDS 82319314 82319841 82319314 ID=Msa0577950-mRNA-1:cds;Parent=Msa0577950-mRNA-1
chr4_1 CDS 82317200 82317725 82317200 ID=Msa0577950-mRNA-1:cds;Parent=Msa0577950-mRNA-1
chr4_1 CDS 82316916 82317118 82316916 ID=Msa0577950-mRNA-1:cds;Parent=Msa0577950-mRNA-1
chr4_1 CDS 82315953 82316198 82315953 ID=Msa0577950-mRNA-1:cds;Parent=Msa0577950-mRNA-1
chr4_1 three_prime_UTR 82315646 82315952 82315646 ID=Msa0577950-mRNA-1:three_prime_utr;Parent=Msa0577950-mRNA-1
Gene Sequence

>Msa0577950

ATGATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>Msa0577950

MMTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV*