AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0228350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0228350 MtrunA17_Chr4g0000061 98.004 501 8 1 1 501 1 499 0.0 988
Msa0228350 MtrunA17_Chr2g0319001 28.132 455 276 17 56 496 106 523 2.19e-31 127
Msa0228350 MtrunA17_Chr4g0042131 27.059 425 251 16 88 501 44 420 5.49e-27 113
Msa0228350 MtrunA17_Chr2g0319011 27.044 318 185 14 185 491 27 308 1.21e-19 89.7
Msa0228350 MtrunA17_Chr8g0356471 26.190 462 270 18 58 501 112 520 6.17e-19 89.7
Msa0228350 MtrunA17_Chr5g0432581 22.318 466 293 15 59 490 47 477 1.67e-17 85.1
Msa0228350 MtrunA17_Chr4g0021771 24.138 464 271 18 59 490 83 497 7.54e-17 83.2
Msa0228350 MtrunA17_Chr4g0036021 24.018 433 275 15 83 490 79 482 1.85e-15 79.0
Msa0228350 MtrunA17_Chr8g0373531 22.926 458 300 15 59 490 47 477 2.17e-15 78.6
Msa0228350 MtrunA17_Chr2g0303731 25.856 263 183 7 7 261 1 259 8.84e-15 77.0
Msa0228350 MtrunA17_Chr1g0186831 23.404 517 302 23 30 488 20 500 1.41e-14 76.3
Msa0228350 MtrunA17_Chr8g0390521 24.213 413 240 13 59 440 46 416 5.01e-14 74.3
Msa0228350 MtrunA17_Chr8g0376611 28.372 215 146 5 71 281 2 212 1.69e-13 72.8
Msa0228350 MtrunA17_Chr3g0144361 22.294 462 298 12 59 490 56 486 2.05e-13 72.4
Msa0228350 MtrunA17_Chr7g0250881 26.761 213 135 6 70 272 106 307 2.86e-13 72.0
Msa0228350 MtrunA17_Chr6g0485661 22.388 402 260 11 59 440 86 455 1.52e-12 69.7
Msa0228350 MtrunA17_Chr4g0004821 28.643 199 118 5 70 259 77 260 1.79e-12 69.3
Msa0228350 MtrunA17_Chr1g0213631 29.167 168 115 3 91 255 48 214 2.15e-12 68.9
Msa0228350 MtrunA17_Chr4g0034681 22.936 436 287 14 82 494 81 490 3.85e-12 68.6
Msa0228350 MtrunA17_Chr5g0434231 30.625 160 87 3 71 229 5 141 4.03e-12 64.3
Msa0228350 MtrunA17_Chr6g0486021 27.650 217 132 6 58 264 79 280 5.74e-12 67.8
Msa0228350 MtrunA17_Chr8g0376631 27.638 199 132 7 89 281 87 279 1.00e-11 67.4
Msa0228350 MtrunA17_Chr7g0214451 28.144 167 116 3 89 252 94 259 2.74e-11 65.9
Msa0228350 MtrunA17_Chr7g0259471 26.368 201 143 3 58 257 67 263 3.56e-11 65.5
Msa0228350 MtrunA17_Chr2g0284271 63.636 44 16 0 437 480 1 44 3.68e-11 58.2
Msa0228350 MtrunA17_Chr2g0282031 24.631 203 139 4 59 257 81 273 4.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0228350 AT3G13050.2 66.734 493 159 4 10 497 2 494 0.0 606
Msa0228350 AT3G13050.4 66.734 493 159 4 10 497 2 494 0.0 606
Msa0228350 AT3G13050.1 66.734 493 159 4 10 497 2 494 0.0 606
Msa0228350 AT3G13050.3 66.734 493 159 4 10 497 2 494 0.0 606
Msa0228350 AT3G20660.1 26.007 546 298 20 5 499 24 514 4.43e-32 129
Msa0228350 AT3G18830.1 22.951 427 291 10 82 490 87 493 4.12e-17 84.7
Msa0228350 AT2G16130.1 24.464 466 289 15 59 493 54 487 1.70e-16 82.4
Msa0228350 AT1G67300.2 25.781 384 226 10 70 437 92 432 7.39e-16 80.5
Msa0228350 AT2G16120.1 24.406 463 287 15 59 490 54 484 1.37e-15 79.7
Msa0228350 AT1G73220.1 23.207 474 284 17 53 501 113 531 1.54e-15 79.7
Msa0228350 AT1G67300.1 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa0228350 AT1G67300.3 25.849 383 226 10 70 437 92 431 4.06e-15 78.2
Msa0228350 AT1G67300.6 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa0228350 AT1G67300.7 25.849 383 226 10 70 437 92 431 4.51e-15 77.8
Msa0228350 AT1G67300.4 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa0228350 AT1G67300.5 25.936 374 219 10 70 428 92 422 1.06e-14 76.6
Msa0228350 AT1G79820.3 28.740 254 142 9 70 311 95 321 1.21e-14 76.6
Msa0228350 AT1G79820.2 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa0228350 AT1G79820.1 28.780 205 121 6 70 264 95 284 5.12e-14 74.7
Msa0228350 AT1G79820.4 28.780 205 121 6 70 264 95 284 5.48e-14 74.3
Msa0228350 AT2G20780.1 24.318 440 252 18 82 490 106 495 8.22e-14 74.3
Msa0228350 AT2G20780.2 24.318 440 252 18 82 490 48 437 9.63e-14 73.9
Msa0228350 AT1G79360.1 25.053 475 266 19 58 499 98 515 1.33e-13 73.6
Msa0228350 AT1G79410.1 24.086 465 279 18 54 500 99 507 1.79e-13 73.2
Msa0228350 AT1G76430.1 19.963 536 326 15 30 498 18 517 4.41e-13 72.0
Msa0228350 AT1G16390.1 25.821 457 260 18 58 493 106 504 4.62e-12 68.6
Msa0228350 AT5G43360.1 21.639 476 271 19 30 444 20 454 5.44e-12 68.6
Msa0228350 AT5G16150.2 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0228350 AT5G16150.1 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0228350 AT5G16150.3 26.994 163 115 3 70 229 146 307 3.31e-11 66.2
Msa0228350 AT2G18480.1 23.846 390 232 14 82 440 73 428 3.94e-11 65.9

Find 143 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGATTCATTCAACTTTC+TGG 0.126827 2_1:-80287225 Msa0228350:five_prime_UTR
AAGGGTTGACCTTGATAATT+TGG 0.146854 2_1:+80284529 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 2_1:-80284520 Msa0228350:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 2_1:-80283210 Msa0228350:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 2_1:+80284416 None:intergenic
AAATGAACATGGTTAATTTA+AGG 0.189180 2_1:-80282854 Msa0228350:three_prime_UTR
AAAGGAATGATTTCTAATTT+AGG 0.203260 2_1:-80284584 Msa0228350:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 2_1:+80286633 None:intergenic
CGAAGTTACCTTTGATGATT+TGG 0.234261 2_1:+80282820 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 2_1:+80283151 None:intergenic
CCATTCAAGTATATGGAATA+TGG 0.273352 2_1:+80287122 None:intergenic
GTACGTACCATTCAAGTATA+TGG 0.276122 2_1:+80287115 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 2_1:-80286933 Msa0228350:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 2_1:-80286603 Msa0228350:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 2_1:-80286604 Msa0228350:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 2_1:-80286927 Msa0228350:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 2_1:+80284681 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 2_1:-80284747 Msa0228350:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 2_1:+80284149 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 2_1:-80286609 Msa0228350:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 2_1:-80284725 Msa0228350:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 2_1:+80284587 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 2_1:+80284141 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 2_1:+80284776 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 2_1:+80284167 None:intergenic
TTCATTGATTCATTCCAGTT+TGG 0.358871 2_1:+80287280 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 2_1:+80284129 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 2_1:+80284510 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 2_1:+80286534 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 2_1:+80284390 None:intergenic
AATGTGTGCGAACGAATAAT+TGG 0.388296 2_1:+80282942 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 2_1:+80286634 None:intergenic
TGTGCACTAGTAATTTGTTC+TGG 0.396713 2_1:+80283051 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 2_1:-80284519 Msa0228350:CDS
ATGATGTTACTCTCATTTGT+AGG 0.412623 2_1:-80286843 Msa0228350:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 2_1:-80283174 Msa0228350:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 2_1:+80284530 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 2_1:-80284876 Msa0228350:intron
CACAGTTCTTGAGGAAGAAA+AGG 0.428597 2_1:-80283032 Msa0228350:three_prime_UTR
TCGTTTACGCCGGCATTGGT+TGG 0.434274 2_1:-80286884 Msa0228350:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 2_1:-80283306 Msa0228350:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 2_1:-80286746 Msa0228350:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 2_1:-80286597 Msa0228350:CDS
TCGTCGTCAACTTACCAAAC+TGG 0.447014 2_1:-80287294 None:intergenic
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 2_1:-80283175 Msa0228350:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 2_1:+80286819 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 2_1:+80284785 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 2_1:-80286711 Msa0228350:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 2_1:+80284168 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 2_1:+80284391 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 2_1:+80284537 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 2_1:+80286752 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 2_1:+80284826 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 2_1:-80286999 Msa0228350:intron
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 2_1:+80283158 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 2_1:-80286745 Msa0228350:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 2_1:-80286888 Msa0228350:CDS
AAAAGGAGAGGGAAGAAGTT+CGG 0.496639 2_1:-80283015 Msa0228350:three_prime_UTR
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 2_1:+80284768 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 2_1:+80286875 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 2_1:-80284538 Msa0228350:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 2_1:+80284417 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 2_1:-80284152 Msa0228350:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 2_1:-80284776 Msa0228350:CDS
CCATATTCCATATACTTGAA+TGG 0.516463 2_1:-80287122 Msa0228350:intron
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 2_1:-80286868 Msa0228350:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 2_1:-80283303 Msa0228350:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 2_1:+80284863 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 2_1:-80286546 Msa0228350:CDS
TGAACATGGTTAATTTAAGG+AGG 0.535787 2_1:-80282851 Msa0228350:three_prime_UTR
GCTACTGTTACTGCTACTGC+CGG 0.538066 2_1:-80286675 Msa0228350:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 2_1:+80284825 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 2_1:+80283168 None:intergenic
TTACTAGTGCACAGTTCTTG+AGG 0.540007 2_1:-80283041 Msa0228350:three_prime_UTR
TATGAAACTTTCTTGATGAG+AGG 0.540801 2_1:+80286791 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 2_1:-80286539 Msa0228350:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 2_1:-80283315 Msa0228350:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 2_1:+80284638 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 2_1:-80286600 Msa0228350:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 2_1:+80284821 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 2_1:-80283286 Msa0228350:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 2_1:-80283276 Msa0228350:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 2_1:+80286521 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 2_1:+80284174 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 2_1:-80284602 Msa0228350:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 2_1:-80284581 Msa0228350:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 2_1:+80284241 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 2_1:+80283320 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 2_1:+80286540 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 2_1:-80283277 Msa0228350:CDS
CAATGAAAATAAAATGAACA+TGG 0.569553 2_1:-80282865 Msa0228350:three_prime_UTR
CTCCCAAACCAAGACCAACA+AGG 0.572336 2_1:+80286601 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 2_1:+80286573 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 2_1:-80284242 Msa0228350:CDS
GAACATGGTTAATTTAAGGA+GGG 0.576006 2_1:-80282850 Msa0228350:three_prime_UTR
GAGCTACAATTACAAACAGA+AGG 0.576404 2_1:+80283220 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 2_1:-80286984 Msa0228350:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 2_1:-80284875 Msa0228350:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 2_1:+80284260 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 2_1:+80286796 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 2_1:+80284820 None:intergenic
AATCATCAAAGGTAACTTCG+AGG 0.583187 2_1:-80282817 Msa0228350:three_prime_UTR
TCCCAAACCAAGACCAACAA+GGG 0.583537 2_1:+80286602 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 2_1:-80284252 Msa0228350:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 2_1:-80284865 Msa0228350:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 2_1:-80286744 Msa0228350:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 2_1:+80283270 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 2_1:-80283316 Msa0228350:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 2_1:-80286821 Msa0228350:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 2_1:-80283339 Msa0228350:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 2_1:-80284392 Msa0228350:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 2_1:+80283338 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 2_1:-80286578 Msa0228350:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 2_1:-80286719 Msa0228350:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 2_1:+80284252 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 2_1:-80286535 Msa0228350:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 2_1:+80284462 None:intergenic
GCAAGTAGCCAAATCATCAA+AGG 0.614035 2_1:-80282828 Msa0228350:three_prime_UTR
TCTTGAGGAAGAAAAGGAGA+GGG 0.618954 2_1:-80283026 Msa0228350:three_prime_UTR
ATTGTCAGAAATAAGGACAC+CGG 0.619613 2_1:+80284688 None:intergenic
TTCTTGAGGAAGAAAAGGAG+AGG 0.623780 2_1:-80283027 Msa0228350:three_prime_UTR
TGACAACCCTTCAGAAGACA+CGG 0.630940 2_1:-80284645 Msa0228350:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 2_1:-80283333 Msa0228350:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 2_1:-80286723 Msa0228350:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 2_1:-80284408 Msa0228350:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 2_1:+80283339 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 2_1:+80284511 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 2_1:+80284639 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 2_1:+80284692 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 2_1:-80284871 Msa0228350:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 2_1:-80283264 Msa0228350:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 2_1:+80286539 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 2_1:-80286998 Msa0228350:intron
ATAAATATACACGATTGTGA+AGG 0.658702 2_1:+80284094 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 2_1:-80286894 Msa0228350:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 2_1:+80283323 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 2_1:-80284084 Msa0228350:intron
TCATCATGTCTACACATCGT+CGG 0.680005 2_1:+80283113 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 2_1:-80284153 Msa0228350:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 2_1:+80286635 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 2_1:-80286997 Msa0228350:intron
GCATAAAGACATTACCTCTG+GGG 0.717940 2_1:+80284070 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 2_1:+80286563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGA+TGG - chr2_1:80283731-80283750 Msa0228350:intron 10.0%
!! TATAAGAAAAGATAGAAATA+TGG - chr2_1:80283873-80283892 Msa0228350:intron 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + chr2_1:80284730-80284749 None:intergenic 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + chr2_1:80284804-80284823 None:intergenic 15.0%
!! TTTACAACTATTTAAATTGA+GGG + chr2_1:80284891-80284910 None:intergenic 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - chr2_1:80284891-80284910 Msa0228350:intron 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - chr2_1:80286066-80286085 Msa0228350:intron 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + chr2_1:80286472-80286491 None:intergenic 15.0%
!! AGAAAAAATAAAGCAAATTA+TGG - chr2_1:80286472-80286491 Msa0228350:intron 15.0%
!!! TTTTTTTTAGTAAATTGTAG+AGG - chr2_1:80287207-80287226 Msa0228350:five_prime_UTR 15.0%
!!! TTTTTTTAGTAAATTGTAGA+GGG - chr2_1:80287208-80287227 Msa0228350:five_prime_UTR 15.0%
!! AATACATTATTATAGATGAC+AGG - chr2_1:80283106-80283125 Msa0228350:exon 20.0%
!! ATACATTATTATAGATGACA+GGG - chr2_1:80283107-80283126 Msa0228350:exon 20.0%
!! ATATATAATTGAAAAGATGG+TGG - chr2_1:80283734-80283753 Msa0228350:intron 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + chr2_1:80283865-80283884 None:intergenic 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - chr2_1:80284255-80284274 Msa0228350:CDS 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + chr2_1:80284795-80284814 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + chr2_1:80284796-80284815 None:intergenic 20.0%
!! GTTTACAACTATTTAAATTG+AGG + chr2_1:80284892-80284911 None:intergenic 20.0%
!!! TATACATTACTTAAGTCTTT+TGG + chr2_1:80284978-80284997 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + chr2_1:80285521-80285540 None:intergenic 20.0%
!! AAAGGAATGATTTCTAATTT+AGG - chr2_1:80285521-80285540 Msa0228350:intron 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + chr2_1:80286214-80286233 None:intergenic 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - chr2_1:80286250-80286269 Msa0228350:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - chr2_1:80286251-80286270 Msa0228350:intron 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - chr2_1:80286252-80286271 Msa0228350:intron 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - chr2_1:80286380-80286399 Msa0228350:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - chr2_1:80286700-80286719 Msa0228350:CDS 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - chr2_1:80286703-80286722 Msa0228350:CDS 20.0%
!!! TTTTTTAGTAAATTGTAGAG+GGG - chr2_1:80287209-80287228 Msa0228350:five_prime_UTR 20.0%
!! CAATGAAAATAAAATGAACA+TGG - chr2_1:80287240-80287259 Msa0228350:five_prime_UTR 20.0%
!! AAATGAACATGGTTAATTTA+AGG - chr2_1:80287251-80287270 Msa0228350:five_prime_UTR 20.0%
! TTTAGATTCATTCAACTTTC+TGG - chr2_1:80282880-80282899 Msa0228350:three_prime_UTR 25.0%
! TACATTATTATAGATGACAG+GGG - chr2_1:80283108-80283127 Msa0228350:exon 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - chr2_1:80284198-80284217 Msa0228350:CDS 25.0%
! AAGTATGTAAGGAAAGAATA+CGG - chr2_1:80284209-80284228 Msa0228350:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - chr2_1:80284254-80284273 Msa0228350:CDS 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - chr2_1:80284256-80284275 Msa0228350:CDS 25.0%
! AAATAAAGGCTTAAGCAAAT+TGG + chr2_1:80284716-80284735 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - chr2_1:80284734-80284753 Msa0228350:CDS 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + chr2_1:80284861-80284880 None:intergenic 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + chr2_1:80285298-80285317 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + chr2_1:80285427-80285446 None:intergenic 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + chr2_1:80285496-80285515 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - chr2_1:80285620-80285639 Msa0228350:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + chr2_1:80286014-80286033 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG + chr2_1:80286148-80286167 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - chr2_1:80286176-80286195 Msa0228350:intron 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + chr2_1:80286209-80286228 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - chr2_1:80286326-80286345 Msa0228350:intron 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + chr2_1:80286391-80286410 None:intergenic 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + chr2_1:80286508-80286527 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG + chr2_1:80286561-80286580 None:intergenic 25.0%
! TAATTCAAAAACAATGAGGT+AGG + chr2_1:80286562-80286581 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + chr2_1:80286566-80286585 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - chr2_1:80286596-80286615 Msa0228350:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + chr2_1:80286627-80286646 None:intergenic 25.0%
!! ACACATTCTTTTTATGTGTT+TGG - chr2_1:80287179-80287198 Msa0228350:five_prime_UTR 25.0%
!! TTCATTGATTCATTCCAGTT+TGG + chr2_1:80282828-80282847 None:intergenic 30.0%
CCATTCAAGTATATGGAATA+TGG + chr2_1:80282986-80283005 None:intergenic 30.0%
CCATATTCCATATACTTGAA+TGG - chr2_1:80282983-80283002 Msa0228350:three_prime_UTR 30.0%
GATGAAGCTCTTATAACATT+AGG - chr2_1:80283172-80283191 Msa0228350:CDS 30.0%
! GCTCTTATAACATTAGGTTT+TGG - chr2_1:80283178-80283197 Msa0228350:CDS 30.0%
ATGATGTTACTCTCATTTGT+AGG - chr2_1:80283262-80283281 Msa0228350:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + chr2_1:80283317-80283336 None:intergenic 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG - chr2_1:80283334-80283353 Msa0228350:CDS 30.0%
!! TTGAAAAGATGGTGGAAATT+AGG - chr2_1:80283742-80283761 Msa0228350:intron 30.0%
!! TGAAAAGATGGTGGAAATTA+GGG - chr2_1:80283743-80283762 Msa0228350:intron 30.0%
AAATTAGGGTTAAGTGGTTT+GGG - chr2_1:80283757-80283776 Msa0228350:intron 30.0%
AGTCAAATCACTATTTACAG+AGG - chr2_1:80283835-80283854 Msa0228350:intron 30.0%
! GTCTCATTTTGTTACATTTG+CGG + chr2_1:80284121-80284140 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - chr2_1:80284126-80284145 Msa0228350:CDS 30.0%
AGTTGGTTAGTATTTAGATG+AGG - chr2_1:80284149-80284168 Msa0228350:CDS 30.0%
AATATAGTGAGTAGTGAGAT+AGG - chr2_1:80284174-80284193 Msa0228350:CDS 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - chr2_1:80284327-80284346 Msa0228350:intron 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - chr2_1:80284395-80284414 Msa0228350:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + chr2_1:80284559-80284578 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - chr2_1:80284557-80284576 Msa0228350:CDS 30.0%
GGCTAAATGATGAAAGTAAA+TGG + chr2_1:80285056-80285075 None:intergenic 30.0%
TTACTTTCATCATTTAGCCT+AGG - chr2_1:80285057-80285076 Msa0228350:intron 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - chr2_1:80285086-80285105 Msa0228350:intron 30.0%
TGACAAATCATAGAGATGAT+GGG - chr2_1:80285184-80285203 Msa0228350:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + chr2_1:80285495-80285514 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + chr2_1:80285497-80285516 None:intergenic 30.0%
GGAATGATTTCTAATTTAGG+TGG - chr2_1:80285524-80285543 Msa0228350:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + chr2_1:80285660-80285679 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - chr2_1:80285737-80285756 Msa0228350:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG - chr2_1:80285783-80285802 Msa0228350:intron 30.0%
AAACAAATGCAAACTATACC+TGG - chr2_1:80286523-80286542 Msa0228350:CDS 30.0%
!! TGATGACGTTTTATATACCT+CGG - chr2_1:80287009-80287028 Msa0228350:intron 30.0%
!! TTTTCATGATTTAAAGTCCG+AGG + chr2_1:80287029-80287048 None:intergenic 30.0%
TGAACATGGTTAATTTAAGG+AGG - chr2_1:80287254-80287273 Msa0228350:five_prime_UTR 30.0%
GAACATGGTTAATTTAAGGA+GGG - chr2_1:80287255-80287274 Msa0228350:five_prime_UTR 30.0%
GTACGTACCATTCAAGTATA+TGG + chr2_1:80282993-80283012 None:intergenic 35.0%
ATCTCAAATCGAATCGAAGA+TGG + chr2_1:80283071-80283090 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + chr2_1:80283312-80283331 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG - chr2_1:80283346-80283365 Msa0228350:CDS 35.0%
GTAAGCACCAATTAACATTC+CGG + chr2_1:80283356-80283375 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - chr2_1:80283359-80283378 Msa0228350:intron 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - chr2_1:80283360-80283379 Msa0228350:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - chr2_1:80283361-80283380 Msa0228350:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - chr2_1:80283386-80283405 Msa0228350:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + chr2_1:80283452-80283471 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + chr2_1:80283473-80283492 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + chr2_1:80283474-80283493 None:intergenic 35.0%
ACAAGCAAGGAGACATAATT+TGG + chr2_1:80283475-80283494 None:intergenic 35.0%
AACAAATTCAAGAAACCACG+AGG + chr2_1:80283545-80283564 None:intergenic 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - chr2_1:80283626-80283645 Msa0228350:intron 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - chr2_1:80283627-80283646 Msa0228350:intron 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - chr2_1:80283756-80283775 Msa0228350:intron 35.0%
ATCGTGTATCATTGTAACAG+AGG + chr2_1:80284024-80284043 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - chr2_1:80284070-80284089 Msa0228350:intron 35.0%
! TCATTTTGTTACATTTGCGG+AGG + chr2_1:80284118-80284137 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - chr2_1:80284132-80284151 Msa0228350:CDS 35.0%
AATACGGATCTCTTGAATCA+AGG - chr2_1:80284225-80284244 Msa0228350:CDS 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + chr2_1:80284290-80284309 None:intergenic 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - chr2_1:80284288-80284307 Msa0228350:intron 35.0%
GCAATATCGCCTTGATATTA+AGG - chr2_1:80284316-80284335 Msa0228350:intron 35.0%
CAGACAAAGCCTTAATATCA+AGG + chr2_1:80284328-80284347 None:intergenic 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - chr2_1:80284326-80284345 Msa0228350:intron 35.0%
ACCAAAACCCTTCAATATGT+AGG - chr2_1:80284418-80284437 Msa0228350:CDS 35.0%
! TCCTACATATTGAAGGGTTT+TGG + chr2_1:80284422-80284441 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + chr2_1:80284428-80284447 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + chr2_1:80284429-80284448 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - chr2_1:80284432-80284451 Msa0228350:CDS 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + chr2_1:80284554-80284573 None:intergenic 35.0%
! CTACTAGTTTAACTGCAAAC+TGG + chr2_1:80284647-80284666 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - chr2_1:80284742-80284761 Msa0228350:CDS 35.0%
TTCTTGCATGAAGGAATGAT+AGG + chr2_1:80284852-80284871 None:intergenic 35.0%
! GTTAATTGTTGGCTACACAT+AGG + chr2_1:80284953-80284972 None:intergenic 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG + chr2_1:80284964-80284983 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - chr2_1:80285069-80285088 Msa0228350:intron 35.0%
TAAAGCCATAACAGTTTCCT+AGG + chr2_1:80285077-80285096 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + chr2_1:80285185-80285204 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - chr2_1:80285183-80285202 Msa0228350:intron 35.0%
AACAGAAGAAGGAAAGATGT+GGG + chr2_1:80285287-80285306 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + chr2_1:80285288-80285307 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + chr2_1:80285340-80285359 None:intergenic 35.0%
! AACTGAAGCAACTAACGTTT+TGG - chr2_1:80285358-80285377 Msa0228350:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - chr2_1:80285380-80285399 Msa0228350:intron 35.0%
AATGGCAAAAAACTTCCTTC+CGG - chr2_1:80285398-80285417 Msa0228350:intron 35.0%
ATTGTCAGAAATAAGGACAC+CGG + chr2_1:80285420-80285439 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - chr2_1:80285503-80285522 Msa0228350:intron 35.0%
TCCTTTCACCCAAATTATCA+AGG - chr2_1:80285567-80285586 Msa0228350:intron 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + chr2_1:80285571-80285590 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + chr2_1:80285578-80285597 None:intergenic 35.0%
! AAGGGTTGACCTTGATAATT+TGG + chr2_1:80285579-80285598 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - chr2_1:80285586-80285605 Msa0228350:intron 35.0%
AAACACTGCCCATAATAGAA+GGG + chr2_1:80285597-80285616 None:intergenic 35.0%
AAAACACTGCCCATAATAGA+AGG + chr2_1:80285598-80285617 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - chr2_1:80285599-80285618 Msa0228350:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + chr2_1:80285691-80285710 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + chr2_1:80285692-80285711 None:intergenic 35.0%
ACCTTTGTAACTTACATCCT+GGG + chr2_1:80285717-80285736 None:intergenic 35.0%
! TGTTTTACTATACCATTCCC+GGG - chr2_1:80285784-80285803 Msa0228350:intron 35.0%
GATAGAATGTTAATGGGAGA+AGG + chr2_1:80285934-80285953 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + chr2_1:80285940-80285959 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + chr2_1:80285941-80285960 None:intergenic 35.0%
ATATGCGAGCTCCAAATAAA+AGG + chr2_1:80285979-80285998 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + chr2_1:80286039-80286058 None:intergenic 35.0%
TTGCATAAAGACATTACCTC+TGG + chr2_1:80286040-80286059 None:intergenic 35.0%
GAGAAATCTTGTGCATTCTT+CGG - chr2_1:80286107-80286126 Msa0228350:intron 35.0%
CACAGAGAACTAACTTTGTA+AGG + chr2_1:80286430-80286449 None:intergenic 35.0%
CTTTCGTCATGTATAAGACA+TGG - chr2_1:80286657-80286676 Msa0228350:CDS 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - chr2_1:80286678-80286697 Msa0228350:CDS 35.0%
GAGCTACAATTACAAACAGA+AGG + chr2_1:80286888-80286907 None:intergenic 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - chr2_1:80286895-80286914 Msa0228350:CDS 35.0%
!! TGTGCACTAGTAATTTGTTC+TGG + chr2_1:80287057-80287076 None:intergenic 35.0%
AATGTGTGCGAACGAATAAT+TGG + chr2_1:80287166-80287185 None:intergenic 35.0%
! CGAAGTTACCTTTGATGATT+TGG + chr2_1:80287288-80287307 None:intergenic 35.0%
AATCATCAAAGGTAACTTCG+AGG - chr2_1:80287288-80287307 Msa0228350:five_prime_UTR 35.0%
!! TTCTGAAATCCAACCAATGC+CGG + chr2_1:80283233-80283252 None:intergenic 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - chr2_1:80283237-80283256 Msa0228350:CDS 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - chr2_1:80283382-80283401 Msa0228350:intron 40.0%
GATCAACATGGAAGGAGAAA+AGG - chr2_1:80283394-80283413 Msa0228350:intron 40.0%
AAGGGAACGAAAAACAAGCA+AGG + chr2_1:80283488-80283507 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - chr2_1:80283490-80283509 Msa0228350:intron 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG - chr2_1:80283590-80283609 Msa0228350:intron 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - chr2_1:80283598-80283617 Msa0228350:intron 40.0%
TGTACCAACAGTCCAAAAAC+CGG + chr2_1:80283605-80283624 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - chr2_1:80283751-80283770 Msa0228350:intron 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG + chr2_1:80283944-80283963 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + chr2_1:80284015-80284034 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + chr2_1:80284069-80284088 None:intergenic 40.0%
TCTACACTAGGAGAGAAAAG+AGG - chr2_1:80284082-80284101 Msa0228350:intron 40.0%
GGATCTCTTGAATCAAGGAA+AGG - chr2_1:80284230-80284249 Msa0228350:CDS 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - chr2_1:80284284-80284303 Msa0228350:intron 40.0%
ATATTGCACTCACCTTCCTT+TGG + chr2_1:80284303-80284322 None:intergenic 40.0%
AAAAACCTCCACACAAGATG+GGG + chr2_1:80284385-80284404 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + chr2_1:80284386-80284405 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + chr2_1:80284387-80284406 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - chr2_1:80284445-80284464 Msa0228350:CDS 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + chr2_1:80284604-80284623 None:intergenic 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + chr2_1:80284608-80284627 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + chr2_1:80284626-80284645 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + chr2_1:80284754-80284773 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - chr2_1:80284754-80284773 Msa0228350:CDS 40.0%
TGCATGAAGGAATGATAGGA+AGG + chr2_1:80284848-80284867 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG + chr2_1:80284949-80284968 None:intergenic 40.0%
TCTGCAAGGAACATTGCATT+GGG + chr2_1:80285214-80285233 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + chr2_1:80285215-80285234 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + chr2_1:80285282-80285301 None:intergenic 40.0%
CCTTTCAAGCATAGGTATCT+TGG + chr2_1:80285332-80285351 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - chr2_1:80285329-80285348 Msa0228350:intron 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + chr2_1:80285469-80285488 None:intergenic 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + chr2_1:80285470-80285489 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - chr2_1:80285585-80285604 Msa0228350:intron 40.0%
TCCCAGGATGTAAGTTACAA+AGG - chr2_1:80285713-80285732 Msa0228350:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + chr2_1:80285718-80285737 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + chr2_1:80285799-80285818 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + chr2_1:80285804-80285823 None:intergenic 40.0%
GGCATCAATCATACATTTCC+CGG + chr2_1:80285805-80285824 None:intergenic 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + chr2_1:80285826-80285845 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + chr2_1:80285867-80285886 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + chr2_1:80285967-80285986 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - chr2_1:80285965-80285984 Msa0228350:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + chr2_1:80286038-80286057 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + chr2_1:80286544-80286563 None:intergenic 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + chr2_1:80286606-80286625 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - chr2_1:80286617-80286636 Msa0228350:CDS 40.0%
TGGTGGAATGTTATGTCCAT+TGG - chr2_1:80286819-80286838 Msa0228350:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - chr2_1:80286829-80286848 Msa0228350:CDS 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - chr2_1:80286931-80286950 Msa0228350:CDS 40.0%
ACACAGTATCTTGCAGTTCT+TGG + chr2_1:80286957-80286976 None:intergenic 40.0%
TCATCATGTCTACACATCGT+CGG + chr2_1:80286995-80287014 None:intergenic 40.0%
TTACTAGTGCACAGTTCTTG+AGG - chr2_1:80287064-80287083 Msa0228350:intron 40.0%
CACAGTTCTTGAGGAAGAAA+AGG - chr2_1:80287073-80287092 Msa0228350:intron 40.0%
TTCTTGAGGAAGAAAAGGAG+AGG - chr2_1:80287078-80287097 Msa0228350:intron 40.0%
TCTTGAGGAAGAAAAGGAGA+GGG - chr2_1:80287079-80287098 Msa0228350:intron 40.0%
AAAAGGAGAGGGAAGAAGTT+CGG - chr2_1:80287090-80287109 Msa0228350:intron 40.0%
GCAAGTAGCCAAATCATCAA+AGG - chr2_1:80287277-80287296 Msa0228350:five_prime_UTR 40.0%
ATGACAGGGGAAGAAGTTGA+AGG - chr2_1:80283121-80283140 Msa0228350:exon 45.0%
ATACTCGTTCTCGTTTACGC+CGG - chr2_1:80283211-80283230 Msa0228350:CDS 45.0%
TTCCATGCAGATTGAACTGC+AGG + chr2_1:80283289-80283308 None:intergenic 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - chr2_1:80283496-80283515 Msa0228350:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - chr2_1:80283501-80283520 Msa0228350:intron 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - chr2_1:80283502-80283521 Msa0228350:intron 45.0%
TCCCAAACCAAGACCAACAA+GGG + chr2_1:80283506-80283525 None:intergenic 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - chr2_1:80283559-80283578 Msa0228350:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - chr2_1:80283570-80283589 Msa0228350:intron 45.0%
ACCATCCAGGTACCTCTATT+AGG + chr2_1:80283574-80283593 None:intergenic 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG - chr2_1:80283583-80283602 Msa0228350:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - chr2_1:80283807-80283826 Msa0228350:intron 45.0%
TTTATCGCACCAAGTGGAGT+CGG + chr2_1:80283938-80283957 None:intergenic 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - chr2_1:80284334-80284353 Msa0228350:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - chr2_1:80284339-80284358 Msa0228350:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - chr2_1:80284344-80284363 Msa0228350:intron 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - chr2_1:80284350-80284369 Msa0228350:intron 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - chr2_1:80284351-80284370 Msa0228350:intron 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - chr2_1:80284352-80284371 Msa0228350:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - chr2_1:80284435-80284454 Msa0228350:CDS 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - chr2_1:80284444-80284463 Msa0228350:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + chr2_1:80284599-80284618 None:intergenic 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + chr2_1:80284605-80284624 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - chr2_1:80284763-80284782 Msa0228350:CDS 45.0%
TCTTGGCATCACAATCTGCA+AGG + chr2_1:80285228-80285247 None:intergenic 45.0%
CAGATTGTGATGCCAAGACT+GGG - chr2_1:80285230-80285249 Msa0228350:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + chr2_1:80285283-80285302 None:intergenic 45.0%
! CATAGGTATCTTGGTGACTC+TGG + chr2_1:80285323-80285342 None:intergenic 45.0%
TCAGAAATAAGGACACCGGA+AGG + chr2_1:80285416-80285435 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - chr2_1:80285460-80285479 Msa0228350:intron 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + chr2_1:80285646-80285665 None:intergenic 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - chr2_1:80285827-80285846 Msa0228350:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - chr2_1:80285828-80285847 Msa0228350:intron 45.0%
TCTGCCTGAAGACCTAACAA+CGG - chr2_1:80285952-80285971 Msa0228350:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - chr2_1:80286021-80286040 Msa0228350:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - chr2_1:80286828-80286847 Msa0228350:CDS 45.0%
ACTAAACCCACTGCTACCAA+TGG + chr2_1:80286838-80286857 None:intergenic 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG - chr2_1:80286841-80286860 Msa0228350:CDS 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - chr2_1:80286930-80286949 Msa0228350:CDS 45.0%
GTCCTGCAGTTCAATCTGCA+TGG - chr2_1:80283284-80283303 Msa0228350:CDS 50.0%
GCTACTGTTACTGCTACTGC+CGG - chr2_1:80283430-80283449 Msa0228350:intron 50.0%
CTCCCAAACCAAGACCAACA+AGG + chr2_1:80283507-80283526 None:intergenic 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - chr2_1:80283505-80283524 Msa0228350:intron 50.0%
AGAAACCACGAGGACAAGAC+AGG + chr2_1:80283535-80283554 None:intergenic 50.0%
CAGGTACCTCTATTAGGAGC+GGG + chr2_1:80283568-80283587 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + chr2_1:80283569-80283588 None:intergenic 50.0%
ACCGGAAAACACAACCATCC+AGG + chr2_1:80283587-80283606 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + chr2_1:80283983-80284002 None:intergenic 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - chr2_1:80284343-80284362 Msa0228350:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - chr2_1:80284345-80284364 Msa0228350:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG - chr2_1:80284374-80284393 Msa0228350:CDS 50.0%
TAGATCCCCATCTTGTGTGG+AGG - chr2_1:80284377-80284396 Msa0228350:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + chr2_1:80284594-80284613 None:intergenic 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + chr2_1:80284595-80284614 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + chr2_1:80284596-80284615 None:intergenic 50.0%
GGCTACACATAGGAAGGAAG+TGG + chr2_1:80284943-80284962 None:intergenic 50.0%
GCAGATTGTGATGCCAAGAC+TGG - chr2_1:80285229-80285248 Msa0228350:intron 50.0%
TTGTGATGCCAAGACTGGGT+TGG - chr2_1:80285234-80285253 Msa0228350:intron 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - chr2_1:80285697-80285716 Msa0228350:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - chr2_1:80285863-80285882 Msa0228350:intron 50.0%
CTGCCTGAAGACCTAACAAC+GGG - chr2_1:80285953-80285972 Msa0228350:intron 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - chr2_1:80286799-80286818 Msa0228350:CDS 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - chr2_1:80286802-80286821 Msa0228350:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + chr2_1:80286940-80286959 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + chr2_1:80286950-80286969 None:intergenic 50.0%
GTTCTCGTTTACGCCGGCAT+TGG - chr2_1:80283217-80283236 Msa0228350:CDS 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - chr2_1:80283221-80283240 Msa0228350:CDS 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - chr2_1:80283508-80283527 Msa0228350:intron 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - chr2_1:80283566-80283585 Msa0228350:intron 55.0%
! TCCATGTAGCCGACTCCACT+TGG - chr2_1:80283926-80283945 Msa0228350:intron 55.0%
ACCAAGTGGAGTCGGCTACA+TGG + chr2_1:80283930-80283949 None:intergenic 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - chr2_1:80285240-80285259 Msa0228350:intron 55.0%
AGCCATCTCCAACCCAGTCT+TGG + chr2_1:80285245-80285264 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + chr2_1:80285959-80285978 None:intergenic 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + chr2_1:80286769-80286788 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - chr2_1:80286766-80286785 Msa0228350:CDS 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + chr2_1:80286770-80286789 None:intergenic 55.0%
TCAGTCAGAACCACCGGTGT+CGG - chr2_1:80286772-80286791 Msa0228350:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + chr2_1:80285856-80285875 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - chr2_1:80285853-80285872 Msa0228350:intron 60.0%
TGAGCTTGCGACTCCGACAC+CGG + chr2_1:80286788-80286807 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - chr2_1:80286789-80286808 Msa0228350:CDS 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - chr2_1:80286790-80286809 Msa0228350:CDS 60.0%
GCGGTCCTGTCTTGTCCTCG+TGG - chr2_1:80283527-80283546 Msa0228350:intron 65.0%
ACGGCTGACAAGAGGAGCCC+AGG + chr2_1:80285848-80285867 None:intergenic 65.0%
GCTTGCGACTCCGACACCGG+TGG + chr2_1:80286785-80286804 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 80282815 80287312 80282815 ID=Msa0228350;Name=Msa0228350
chr2_1 mRNA 80282815 80287312 80282815 ID=Msa0228350-mRNA-1;Parent=Msa0228350;Name=Msa0228350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=187|1|1|1|0.75|0.8|5|307|501
chr2_1 exon 80282815 80283367 80282815 ID=Msa0228350-mRNA-1:exon:24365;Parent=Msa0228350-mRNA-1
chr2_1 exon 80284085 80284287 80284085 ID=Msa0228350-mRNA-1:exon:24364;Parent=Msa0228350-mRNA-1
chr2_1 exon 80284369 80284894 80284369 ID=Msa0228350-mRNA-1:exon:24363;Parent=Msa0228350-mRNA-1
chr2_1 exon 80286479 80287006 80286479 ID=Msa0228350-mRNA-1:exon:24362;Parent=Msa0228350-mRNA-1
chr2_1 exon 80287123 80287312 80287123 ID=Msa0228350-mRNA-1:exon:24361;Parent=Msa0228350-mRNA-1
chr2_1 five_prime_UTR 80287126 80287312 80287126 ID=Msa0228350-mRNA-1:five_prime_utr;Parent=Msa0228350-mRNA-1
chr2_1 CDS 80287123 80287125 80287123 ID=Msa0228350-mRNA-1:cds;Parent=Msa0228350-mRNA-1
chr2_1 CDS 80286479 80287006 80286479 ID=Msa0228350-mRNA-1:cds;Parent=Msa0228350-mRNA-1
chr2_1 CDS 80284369 80284894 80284369 ID=Msa0228350-mRNA-1:cds;Parent=Msa0228350-mRNA-1
chr2_1 CDS 80284085 80284287 80284085 ID=Msa0228350-mRNA-1:cds;Parent=Msa0228350-mRNA-1
chr2_1 CDS 80283122 80283367 80283122 ID=Msa0228350-mRNA-1:cds;Parent=Msa0228350-mRNA-1
chr2_1 three_prime_UTR 80282815 80283121 80282815 ID=Msa0228350-mRNA-1:three_prime_utr;Parent=Msa0228350-mRNA-1
Gene Sequence

>Msa0228350

ATGATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>Msa0228350

MMTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV*